Query psy1176
Match_columns 232
No_of_seqs 184 out of 1154
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 18:13:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1176.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1176hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2apoa2 d.265.1.2 (A:17-246) P 100.0 1.3E-72 9.3E-77 491.8 22.0 205 4-222 1-205 (230)
2 d2ey4a2 d.265.1.2 (A:8-252) Ps 100.0 6.3E-71 4.6E-75 484.5 22.9 208 5-225 15-222 (245)
3 d1sgva2 d.265.1.2 (A:3-235) Ps 100.0 2.2E-68 1.6E-72 466.0 20.7 191 31-224 3-221 (233)
4 d1k8wa5 d.265.1.2 (A:9-250) Ps 100.0 1.4E-67 1E-71 463.2 22.4 190 31-225 3-217 (242)
5 d1r3ea2 d.265.1.2 (A:10-237) P 100.0 6.6E-67 4.8E-71 455.3 21.4 186 30-220 1-211 (228)
6 d1vioa1 d.265.1.3 (A:58-231) R 98.4 2.5E-07 1.8E-11 74.3 7.8 139 34-213 5-157 (174)
7 d1kska4 d.265.1.3 (A:60-231) R 98.2 7.5E-07 5.5E-11 71.7 6.2 135 34-210 3-152 (172)
8 d1v9fa_ d.265.1.3 (A:) Ribosom 97.5 3.8E-05 2.8E-09 64.8 4.9 70 32-101 15-100 (250)
9 d1v9ka_ d.265.1.3 (A:) Ribosom 97.4 5.1E-05 3.7E-09 62.8 4.3 70 32-101 8-89 (227)
10 d1szwa_ d.265.1.4 (A:) tRNA ps 45.1 8.3 0.0006 32.2 3.9 49 32-81 43-93 (341)
11 d1yp2a2 c.68.1.6 (A:10-316) Gl 28.2 7.3 0.00053 30.7 0.6 32 66-97 3-37 (307)
12 d1urra_ d.58.10.1 (A:) Acylpho 22.1 67 0.0049 21.2 4.9 35 165-199 4-41 (97)
No 1
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=1.3e-72 Score=491.80 Aligned_cols=205 Identities=34% Similarity=0.570 Sum_probs=186.2
Q ss_pred ccceeccCCCCCCCCCCCCccchhhhccceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEcccc
Q psy1176 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRAT 83 (232)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~aT 83 (232)
+|.++++..|+..+|.+|.+|++.+++.+|||+||||.|||||+||+++||+++.+||||+|||||+||||||||+|+||
T Consensus 1 ~~~~~~~~~~~~~~g~~p~~r~i~~~~~~G~l~idKP~G~TS~~vv~~ikk~l~~kKvGH~GTLDP~AtGvL~v~iG~aT 80 (230)
T d2apoa2 1 ELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERAT 80 (230)
T ss_dssp CEEESSCCCCCTTSSCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGG
T ss_pred CeEeccCCcCCcccCCCcccCCHHHHhcCcEEEEECCCCCCHHHHHHHHHHHcCCCCCCcccccCccceeeeeeeecHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCceEEEEEEecceecccccccCcHHHHHHHHhcCccCceecCCccCccceeeCCCCccEEEEEEeeEeeCC
Q psy1176 84 RLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVT 163 (232)
Q Consensus 84 kl~~~l~~~~K~Y~a~~~lG~~tdt~~~v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~R~v~Iy~i~l~~~~~~ 163 (232)
|+++|++..+|+|++++.||..|++ ++|++++++|.|+++|+||+ |||+|++ .|.++||++++++++.
T Consensus 81 Kl~~~~~~~~K~Y~~~~~~g~~t~~--------~di~~~l~~f~G~i~Q~PP~--ySAiK~~-~r~~~i~~l~l~~~~~- 148 (230)
T d2apoa2 81 KTIPMWHIPPKEYVCLMHLHRDASE--------EDILRVFKEFTGRIYQRPPL--KAAVKRR-LRIRKIHELELLDKDG- 148 (230)
T ss_dssp GGGGGTTSSCEEEEEEEEESSCCCH--------HHHHHHHHHHSEEEECC--------------CEEEEEEEEEEEEET-
T ss_pred HHHHHHhccCceEEEEEEeeccccH--------hHHHHHHHhccCcccccCCe--eeeeccc-cceeeeEEeeeccccC-
Confidence 9999999999999999999999964 45889999999999999999 9999998 7899999999999987
Q ss_pred CceEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHHhc
Q psy1176 164 LSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222 (232)
Q Consensus 164 ~~~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~~~ 222 (232)
|.+.|+|+||+||||||||+|||++|||+|||++||||++|+|+++|| ++|+||.+.
T Consensus 149 -~~~~~~V~CSkGTYIRSLa~DlG~~Lg~~a~l~~LrRt~~G~f~l~~a-i~l~dl~~a 205 (230)
T d2apoa2 149 -KDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDA-VYLQDLLDA 205 (230)
T ss_dssp -TEEEEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGC-BCHHHHHHH
T ss_pred -CeEEEEEEECCCccHHHHHHHHHHHcCCEEEEeECcCCccCCcCHHHc-cCHHHHHHH
Confidence 799999999999999999999999999999999999999999999996 899999764
No 2
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=100.00 E-value=6.3e-71 Score=484.53 Aligned_cols=208 Identities=38% Similarity=0.588 Sum_probs=196.3
Q ss_pred cceeccCCCCCCCCCCCCccchhhhccceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEccccc
Q psy1176 5 LNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATR 84 (232)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~aTk 84 (232)
++...+.-|++.+|..|.+||+.+.+.+|||+||||+|||||+||+++|++++.+|+||+|||||+||||||+|+|+|||
T Consensus 15 ~~~~~~~~t~~~~g~~p~~r~~~~~~~~G~l~idKP~G~TS~~vv~~vkk~l~~kKvGH~GTLDP~AtGvL~i~iG~aTK 94 (245)
T d2ey4a2 15 LIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATR 94 (245)
T ss_dssp EESCTTCCCCTTSCCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGG
T ss_pred EEEccCCccCcccCCCcccCCHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHhCcCCCCcCccCCCcceeeEEEEecHHHH
Confidence 34445667888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCceEEEEEEecceecccccccCcHHHHHHHHhcCccCceecCCccCccceeeCCCCccEEEEEEeeEeeCCC
Q psy1176 85 LVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTL 164 (232)
Q Consensus 85 l~~~l~~~~K~Y~a~~~lG~~tdt~~~v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~R~v~Iy~i~l~~~~~~~ 164 (232)
+++|+++.+|+|++++.||.+++ .++|++++++|.|+++|+||+ |||+|++ .|.+.||++++++++.
T Consensus 95 l~~~~~~~~K~Y~~~~~lg~~~~--------~~~i~~~l~~f~G~i~Q~PP~--ySAiK~~-~r~~~I~~~ell~~~~-- 161 (245)
T d2ey4a2 95 VVQALLPAGKEYVALMHLHGDVP--------EDKIIQVMKEFEGEIIQRPPL--RSAVKRR-LRTRKVYYIEVLEIEG-- 161 (245)
T ss_dssp GHHHHTTSCEEEEEEEEESSCCC--------HHHHHHHHHTTSEEEEECCCS--SSCSCCC-CEEEEEEEEEEEEEET--
T ss_pred HHHHhccCCcEEEEEEEecCccc--------HHHHHHHHHhCcceeeecCCh--HHhcccc-ccceEEEEEEEeeecc--
Confidence 99999999999999999998874 567889999999999999999 9999999 6889999999999987
Q ss_pred ceEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHHhchhh
Q psy1176 165 STGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHI 225 (232)
Q Consensus 165 ~~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~~~~~~ 225 (232)
+.+.|+|.||+||||||||+|||++|||+|||++||||++|+|+++||+++|+||.++..+
T Consensus 162 ~~~~~~V~CSkGTYIRSLa~DiG~~Lg~~a~l~~LrRt~~G~F~l~~alvtl~dL~d~~~~ 222 (245)
T d2ey4a2 162 RDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYF 222 (245)
T ss_dssp TEEEEEEEECTTCCHHHHHHHHHHHTSSCEEEEEEEEEEETTEESSTTCBCHHHHHHHHHH
T ss_pred ccceeeccccCchhhhhHHHHHHHhhCCeEEEeEEEEEEecCccHHhccCCHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999988899999877544
No 3
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00 E-value=2.2e-68 Score=465.99 Aligned_cols=191 Identities=25% Similarity=0.410 Sum_probs=164.7
Q ss_pred cceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEccccccchhhhcCCceEEEEEEecceecccc
Q psy1176 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110 (232)
Q Consensus 31 ~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~aTkl~~~l~~~~K~Y~a~~~lG~~tdt~~ 110 (232)
.+|||+||||+|||||+||+++|+.++.+|+||+|||||+|||||+||+|+|||+++++++.+|+|++++.||.+|||.|
T Consensus 3 ~~G~l~v~KP~G~TS~~~v~~vk~~~~~kKvGh~GTLDP~AtGvL~i~ig~aTK~~~~~~~~~K~Y~~~~~lG~~TdT~D 82 (233)
T d1sgva2 3 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTED 82 (233)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTSB
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHhCcCccccCcCCCCcceeeEEEEechhhhhhhhhccCceEEEEEEEEcccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred c---c-------cCcHHHHHHHHhcCccCceecCCccCccceeeCCC----------------CccEEEEEEeeEeeC--
Q psy1176 111 K---A-------SKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPN----------------KKPTYMKSNLISSDV-- 162 (232)
Q Consensus 111 ~---v-------~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~----------------R~v~Iy~i~l~~~~~-- 162 (232)
. + +++.++|++++++|+|+++|+||+ |||+|++|+ |+++||++++++++.
T Consensus 83 ~~G~vi~~~~~~~~t~~~i~~~l~~f~G~~~Q~PP~--ySAvKv~GkraYelAR~G~~~~~~~r~v~I~~~~l~~~~~~~ 160 (233)
T d1sgva2 83 AEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS--VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRD 160 (233)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHTCEEC------------------------------CCCCCCEEEEEEEEEEEEET
T ss_pred cccceeeeeccccchHHHHHHHHHhcCCcEEeeccH--HHHhhccChHHHHHHHhCCcccccccceeeeeEEEEeeccCC
Confidence 2 1 368999999999999999999999 999999984 578999999999865
Q ss_pred CCceEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHHhchh
Q psy1176 163 TLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEH 224 (232)
Q Consensus 163 ~~~~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~~~~~ 224 (232)
..|.++|+|+||+||||||||+|||++|||+|||++||||++|+|+++|| ++||||.+.+.
T Consensus 161 ~~~~~~~~v~Cs~GTYIRsLa~DiG~~Lg~~A~l~~LrRt~~G~F~~~~a-~~l~~l~~~~~ 221 (233)
T d1sgva2 161 QLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQA-RSLDDLAERPA 221 (233)
T ss_dssp TEEEEEEEEEESCCTTHHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGGC-BCHHHHHHSCC
T ss_pred CceEEEEEEEECchhHHHHHHHHHHHHhCCcEEEEEeEeeeEcCCCHHHc-cCHHHHhcChh
Confidence 23689999999999999999999999999999999999999999999996 89999987543
No 4
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.4e-67 Score=463.19 Aligned_cols=190 Identities=25% Similarity=0.354 Sum_probs=179.0
Q ss_pred cceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEccccccchhhhcCCceEEEEEEecceecccc
Q psy1176 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110 (232)
Q Consensus 31 ~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~aTkl~~~l~~~~K~Y~a~~~lG~~tdt~~ 110 (232)
+||||+||||+|+|||+||+++|+.++.+|+||+|||||+|||||++|+|+|||+++++++.+|+|+++++||.+|||.|
T Consensus 3 ~~G~l~v~KP~g~tS~~vv~~~k~~l~~kKvGh~GTLDP~AsGvL~i~ig~aTK~~~~~~~~~K~Y~~~i~~G~~TdT~D 82 (242)
T d1k8wa5 3 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSD 82 (242)
T ss_dssp CCEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHHTSCEEEEEEEEETEEESSSB
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHhCCCcCCcCCcCCCcccceEEEEEchhhhhhhhhhhhhheeeEEEEECccccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c---------ccCcHHHHHHHHhcCccCceecCCccCccceeeCCC----------------CccEEEEEEeeEeeCCCc
Q psy1176 111 K---------ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPN----------------KKPTYMKSNLISSDVTLS 165 (232)
Q Consensus 111 ~---------v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~----------------R~v~Iy~i~l~~~~~~~~ 165 (232)
. ..++.+++++++++|+|.++|+||+ |||+|++|+ |.+.||++++++++. +
T Consensus 83 ~~G~i~~~~~~~~~~~~i~~~l~~f~G~~~Q~PP~--~SAvKv~GkraY~lAR~g~~v~~~~r~i~i~~l~~~~~~~--~ 158 (242)
T d1k8wa5 83 ADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM--YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--N 158 (242)
T ss_dssp TTSCEEEECCCCCCHHHHHHHHHTTSEEEEECCCS--SSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEET--T
T ss_pred chhhhcccccccchhHHHHHhHHhccccEEeeccH--HHHHHHhhHHHHHHHHhhcccccceeEEEeEeeeeccccc--c
Confidence 2 2368899999999999999999999 999999984 578999999999976 7
Q ss_pred eEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHHhchhh
Q psy1176 166 TGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHI 225 (232)
Q Consensus 166 ~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~~~~~~ 225 (232)
.+.|+|+||+||||||||+|||++|||.|||++||||++|+|++++| ++|++|.+..+.
T Consensus 159 ~~~f~v~cskGTYIRsLa~DlG~~Lg~~a~l~~LrRt~~G~f~~~~a-~~l~~l~~~~~~ 217 (242)
T d1k8wa5 159 ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM-VTLEHLRELVEQ 217 (242)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHTSCEEEEEEEEEEETTCCGGGC-EEHHHHHHHHHH
T ss_pred EEEEEEEEccchHHHHHHHHHHHhcCCCEEEeEEEEeeECCCCHHHC-CCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999986 899999876543
No 5
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=6.6e-67 Score=455.26 Aligned_cols=186 Identities=25% Similarity=0.431 Sum_probs=176.3
Q ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEccccccchhhhcCCceEEEEEEecceeccc
Q psy1176 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENV 109 (232)
Q Consensus 30 ~~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~aTkl~~~l~~~~K~Y~a~~~lG~~tdt~ 109 (232)
|.||||+||||+||||||||+++|+.++.+|+||+|||||+||||||+|+|+|||+++++++.+|+|++++.||.+|||.
T Consensus 1 m~~G~l~i~Kp~g~tS~~~v~~vk~~l~~~KvGh~GTLDP~AsGvL~i~ig~~tkl~~~~~~~~K~Y~~~~~lG~~TdT~ 80 (228)
T d1r3ea2 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETF 80 (228)
T ss_dssp CCCEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTSCEEEEEEEEETEEESSS
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHhCCCccCcCcccCCcceeeEEEEEcccccchhhhhcccceEEEEEEEecccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc---------ccCcHHHHHHHHhcCccCceecCCccCccceeeCCC----------------CccEEEEEEeeEeeCCC
Q psy1176 110 AK---------ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPN----------------KKPTYMKSNLISSDVTL 164 (232)
Q Consensus 110 ~~---------v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~----------------R~v~Iy~i~l~~~~~~~ 164 (232)
|. ..++.++|++++++|+|.++|.||+ |||+|++|+ |.+.||++++++++.
T Consensus 81 D~~G~i~~~~~~~~~~~~i~~~l~~f~G~~~Q~pP~--ySA~Kv~Gkr~Y~lAR~g~~~~~~~r~v~I~~~~l~~~~~-- 156 (228)
T d1r3ea2 81 DITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPA--YSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEG-- 156 (228)
T ss_dssp BTTSCEEEECCCCCCHHHHHHHHHSSSEEEEECCCS--SSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEET--
T ss_pred ccCCccceecccchhHHHHHHHHHhccChhhhHHHH--HHHhhcchHHHHHHHHhhhccccccchhhhhhhhheeecC--
Confidence 62 2368899999999999999999999 999999984 478999999999987
Q ss_pred ceEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHH
Q psy1176 165 STGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEH 220 (232)
Q Consensus 165 ~~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~ 220 (232)
|.++|+|+||+||||||||+|||+.|||+|||.+|||+++|+|+++|| ++++|+.
T Consensus 157 ~~~~~~v~cs~GTYIRsL~~dlg~~Lg~~a~l~~LrR~~~G~f~l~~a-~~l~~~~ 211 (228)
T d1r3ea2 157 RDVSFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEES-LNVFEAA 211 (228)
T ss_dssp TEEEEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGC-BCTTTSC
T ss_pred CcceeEEEECCHHHHHHHHHHHHHHcCCcEEEeEeEEeeecCcChHHc-CCHHHhC
Confidence 799999999999999999999999999999999999999999999996 7888773
No 6
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=98.42 E-value=2.5e-07 Score=74.25 Aligned_cols=139 Identities=19% Similarity=0.243 Sum_probs=78.9
Q ss_pred EEEEeCCCCCCHHH---HHHHHHHHhc---cccccCCCCCCCCceEEEEEEEccccccchhh----hcCCceEEEEEEec
Q psy1176 34 YVNLDKPSNPSSHE---VVAWIKRILR---CEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ----QSAGKEYISIFKLH 103 (232)
Q Consensus 34 il~v~KP~G~tS~~---vv~~ik~~l~---~~KvGH~GTLDP~AtGvLvv~iG~aTkl~~~l----~~~~K~Y~a~~~lG 103 (232)
.+++|||+|+-|+- --..+...+. ..++...|.||..+||||+++-. .+++..+ ....|.|.+++.-.
T Consensus 5 Yi~lNKP~G~~~~~~~~~~~~v~~~l~~~~~~~l~~V~RLD~~TsGLll~t~d--~~~~~~l~~~~~~~~k~y~v~v~~~ 82 (174)
T d1vioa1 5 YFMLNKPQGCVCSNDDGDYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDD--GQWSHRITSPKHHCEKTYLVTLADP 82 (174)
T ss_dssp EEEEEECTTCBSSCCC--CCBGGGGSCTTGGGGCEESSCCCTTCEEEEEEESC--HHHHHHHHCTTSCCCEEEEEEESSC
T ss_pred EEEEECCCCEEeCCCCCCCCcHHHhCcccccCceEEEecCChhHhceEEEeec--ccccccccccccceeeeeeeEEecc
Confidence 68899999985531 0111111221 23567799999999999999743 2333344 34678898866422
Q ss_pred ceecccccccCcHHHHHHHHhc--CccCceecCCccCccceeeCCCCccEEEEEEeeEeeCCCceEEEEEEeeCCcc--h
Q psy1176 104 SAVENVAKASKKKMMIKQGLLD--KHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY--V 179 (232)
Q Consensus 104 ~~tdt~~~v~~t~e~l~~~l~~--f~G~i~Q~PP~~~ySAvK~~G~R~v~Iy~i~l~~~~~~~~~~~~~v~cs~GTY--I 179 (232)
. +++.++..-+. ..|. ..++. +..+ +. . +...+++....|.+ |
T Consensus 83 ~----------~~~~~~~l~~~v~~~g~--~~~~~--~~~~-------------~~--~----~~~~~~i~l~tGR~hQI 129 (174)
T d1vioa1 83 V----------EENYSAACAEGILLRGE--KEPTK--PAKL-------------EI--L----DDYNVNLTISEGRYHQV 129 (174)
T ss_dssp C----------CTTHHHHHHHCCCCTTC--SSCCC--CCEE-------------EE--C----SSSEEEEEESCCCTTHH
T ss_pred c----------chhhHHHHhCCceecCc--cccce--eeee-------------cc--c----cCcEEEEEEecccchHH
Confidence 1 22233222221 1221 12222 1111 11 1 12346677778877 7
Q ss_pred HHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccc
Q psy1176 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213 (232)
Q Consensus 180 RsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~ 213 (232)
|-+...+| .. +..|.|+++|++++.+++
T Consensus 130 R~~~~~~g----~p--I~~L~Ri~~g~~~L~~~L 157 (174)
T d1vioa1 130 KRMFAALG----NK--VVGLHRWKIGDVVLDESL 157 (174)
T ss_dssp HHHHHHTT----CC--EEEEEEEEETTEECCTTC
T ss_pred HHHHHHcC----CE--EEEEEEEEEcccccCCCC
Confidence 77776654 34 789999999999996543
No 7
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]}
Probab=98.22 E-value=7.5e-07 Score=71.66 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=78.6
Q ss_pred EEEEeCCCCCCHHH-------HHHHHHHHhccccccCCCCCCCCceEEEEEEEccccccchhhh----cCCceEEEEEEe
Q psy1176 34 YVNLDKPSNPSSHE-------VVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ----SAGKEYISIFKL 102 (232)
Q Consensus 34 il~v~KP~G~tS~~-------vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~aTkl~~~l~----~~~K~Y~a~~~l 102 (232)
.+++|||+|+-|+. +...+.+. ...++-..|-||..+||+|++.-. .+++..+. ...|+|.+++.
T Consensus 3 yi~lNKP~G~l~s~~~~~~~~~~~~l~~~-~~~~l~~vgRLD~~tsGLlL~tnd--g~~~~~l~~~~~~i~k~Y~v~v~- 78 (172)
T d1kska4 3 YFMLNKPQGYVCSTDDPDHPTVLYFLDEP-VAWKLHAAGRLDIDTTGLVLMTDD--GQWSHRITSPRHHCEKTYLVTLE- 78 (172)
T ss_dssp EEEEEECTTCBSSSSCSSSCBGGGGCCCT-TGGGCEESSCCCTTCEEEEEEESC--HHHHHHHHCTTSCCCEEEEEEES-
T ss_pred EEEEECCCCEEECCcCCCCCcEEEecCcc-ccCcEEEeecCCccccccEEEecc--cceeeeeccccccccEEEEEEEe-
Confidence 57899999995521 11111110 123688999999999999999653 33444443 46899999773
Q ss_pred cceecccccccCcHHHHHHHHhc--CccCceecCCccCccceeeCCCCccEEEEEEeeEeeCCCceEEEEEEeeCCcc--
Q psy1176 103 HSAVENVAKASKKKMMIKQGLLD--KHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY-- 178 (232)
Q Consensus 103 G~~tdt~~~v~~t~e~l~~~l~~--f~G~i~Q~PP~~~ySAvK~~G~R~v~Iy~i~l~~~~~~~~~~~~~v~cs~GTY-- 178 (232)
| .++.++++..-.. +.|......|. .+. ..+ ...++|....|.+
T Consensus 79 ~---------~i~~~~~~~l~~gv~i~~~~~~~~~~--------------~v~-----~~~----~~~l~i~l~~Gr~~q 126 (172)
T d1kska4 79 S---------PVADDTAEQFAKGVQLHNEKDLTKPA--------------VLE-----VIT----PTQVRLTISEGRYHQ 126 (172)
T ss_dssp S---------CCCTTHHHHHHHCCCCTTCSSCCCCC--------------EEE-----EEE----TTEEEEEESCCCTTH
T ss_pred c---------cCCHHHHHHhhcceEEcCccccccce--------------EEe-----ecc----CcEEEEEEecCccHH
Confidence 1 1234444433221 22222111111 111 111 1246677777765
Q ss_pred hHHHHHHHHhhcCCcEEEeeEEEEEEeCccCc
Q psy1176 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210 (232)
Q Consensus 179 IRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~ 210 (232)
||-+...+|. . +.+|.|+++|+++++
T Consensus 127 IR~~~~~lg~----~--V~~L~Rv~~G~~~L~ 152 (172)
T d1kska4 127 VKRMFAAVGN----H--VVELHRERIGGITLD 152 (172)
T ss_dssp HHHHHHHTTC----C--EEEEEEEEETTEECC
T ss_pred HHHHHHHcCC----E--EeEEEEEEEccEecC
Confidence 7777666654 3 779999999999984
No 8
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]}
Probab=97.51 E-value=3.8e-05 Score=64.79 Aligned_cols=70 Identities=26% Similarity=0.367 Sum_probs=55.8
Q ss_pred ceEEEEeCCCCCCHH--------HHHHHHHHHhc----cccccCCCCCCCCceEEEEEEEccc--cccchhhhcC--Cce
Q psy1176 32 AGYVNLDKPSNPSSH--------EVVAWIKRILR----CEKTGHSGTLDPKTSGCLIVCIDRA--TRLVKSQQSA--GKE 95 (232)
Q Consensus 32 ~Gil~v~KP~G~tS~--------~vv~~ik~~l~----~~KvGH~GTLDP~AtGvLvv~iG~a--Tkl~~~l~~~--~K~ 95 (232)
+.+++||||+|+.+| .+++.+++.+. ..+.+...-||..+||||++|-++. ..+...+.+. .|+
T Consensus 15 ~~~ivvnKP~gl~~hp~~~~~~~t~~~~l~~~~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~v~K~ 94 (250)
T d1v9fa_ 15 EDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITRE 94 (250)
T ss_dssp SSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCCCCCcCCCCCCCccHHHHHHHHhhhccCCCceeEEeecCCCCcceEEEecccHHHHhhhhhhccceEeEE
Confidence 579999999999886 57777777653 4478889999999999999998874 4466666653 799
Q ss_pred EEEEEE
Q psy1176 96 YISIFK 101 (232)
Q Consensus 96 Y~a~~~ 101 (232)
|.|...
T Consensus 95 Y~a~~~ 100 (250)
T d1v9fa_ 95 YEAVAI 100 (250)
T ss_dssp EEEEEE
T ss_pred eeeeec
Confidence 999754
No 9
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]}
Probab=97.40 E-value=5.1e-05 Score=62.75 Aligned_cols=70 Identities=24% Similarity=0.379 Sum_probs=54.4
Q ss_pred ceEEEEeCCCCCCHH-------HHHHHHHHHhc-cccccCCCCCCCCceEEEEEEEccc--cccchhhhc--CCceEEEE
Q psy1176 32 AGYVNLDKPSNPSSH-------EVVAWIKRILR-CEKTGHSGTLDPKTSGCLIVCIDRA--TRLVKSQQS--AGKEYISI 99 (232)
Q Consensus 32 ~Gil~v~KP~G~tS~-------~vv~~ik~~l~-~~KvGH~GTLDP~AtGvLvv~iG~a--Tkl~~~l~~--~~K~Y~a~ 99 (232)
+.+++||||+|+.+| .+++.++.... ....+-..-||-..||||++|-++. ..+.+.|.+ -.|+|.|.
T Consensus 8 ~~ilvvnKP~gl~~h~~~~~~~~~~~~l~~~~~~~~~~~~vHRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v~K~Y~a~ 87 (227)
T d1v9ka_ 8 DHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 87 (227)
T ss_dssp SSEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEEECCCCCccCCCCCCcchHHHHHHHhCCCCcccceeeeccceeeeeeeeecchHHHHHHHHHHhcccccceeccc
Confidence 469999999999875 67888877654 4567778899999999999998874 345555554 47999996
Q ss_pred EE
Q psy1176 100 FK 101 (232)
Q Consensus 100 ~~ 101 (232)
..
T Consensus 88 ~~ 89 (227)
T d1v9ka_ 88 VR 89 (227)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 10
>d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD {Escherichia coli [TaxId: 562]}
Probab=45.06 E-value=8.3 Score=32.17 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=41.7
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhcc--ccccCCCCCCCCceEEEEEEEcc
Q psy1176 32 AGYVNLDKPSNPSSHEVVAWIKRILRC--EKTGHSGTLDPKTSGCLIVCIDR 81 (232)
Q Consensus 32 ~Gil~v~KP~G~tS~~vv~~ik~~l~~--~KvGH~GTLDP~AtGvLvv~iG~ 81 (232)
+-++.|.|- |++-+++++.|.+.++. +.+|++|+=|-.|-=.=-+++-.
T Consensus 43 ~~~~~l~K~-~~dT~~ai~~Lar~l~v~~~~i~yAG~KDk~AvT~Q~vSv~~ 93 (341)
T d1szwa_ 43 HILVRILKN-GCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARV 93 (341)
T ss_dssp EEEEEEEES-SSCHHHHHHHHHHHTTCCGGGEEESCCCCTTSEEEEEEEEEC
T ss_pred EEEEEEEEC-CCCHHHHHHHHHHHhCCChhheeecccccCceeeeeeeeeec
Confidence 347778775 99999999999999985 78999999999998777777743
No 11
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=28.20 E-value=7.3 Score=30.67 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=19.7
Q ss_pred CCCCCceE-E--EEEEEccccccchhhhcCCceEE
Q psy1176 66 TLDPKTSG-C--LIVCIDRATRLVKSQQSAGKEYI 97 (232)
Q Consensus 66 TLDP~AtG-v--Lvv~iG~aTkl~~~l~~~~K~Y~ 97 (232)
.|||.|+. | +++|=|.||||-|+=.+.+|...
T Consensus 3 ~~~~~~~~~~~AIILAaG~GtRL~plT~~~PK~ll 37 (307)
T d1yp2a2 3 CLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAV 37 (307)
T ss_dssp CCSSCHHHHEEEEEC------CCTTTTTTSCGGGC
T ss_pred ccCCCcCCceEEEEECCCCcccCChhhcCCCcceE
Confidence 47898887 5 77788999999997666788743
No 12
>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=22.12 E-value=67 Score=21.25 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=28.2
Q ss_pred ceEEEEEEeeC---CcchHHHHHHHHhhcCCcEEEeeE
Q psy1176 165 STGIIWLKCQA---GTYVRTYCVHMGLVLGVGAQMIEL 199 (232)
Q Consensus 165 ~~~~~~v~cs~---GTYIRsL~~DiG~~Lg~~A~l~~L 199 (232)
+.+.+++.+++ |-.-|..+..+|..||..+++..+
T Consensus 4 ~~~~~~~~V~G~VQGVGFR~~~~~~A~~l~l~G~V~N~ 41 (97)
T d1urra_ 4 QIFALDFEIFGRVQGVFFRKHTSHEAKRLGVRGWCMNT 41 (97)
T ss_dssp CEEEEEEEEEEECSSSSHHHHHHHHHHHHTCEEEEEEC
T ss_pred eEEEEEEEEEEEecCcCChHHHHHHHHHcCCEEEEEEC
Confidence 34566666666 888899999999999999998754
Done!