Your job contains 1 sequence.
>psy1176
NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK
TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK
QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR
TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVLC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1176
(232 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0259937 - symbol:Nop60B "Nucleolar protein at 60B"... 692 3.5e-68 1
UNIPROTKB|F1RZ24 - symbol:DKC1 "Uncharacterized protein" ... 639 1.4e-62 1
UNIPROTKB|E2R6Q8 - symbol:DKC1 "Uncharacterized protein" ... 638 1.8e-62 1
UNIPROTKB|F6XRK3 - symbol:DKC1 "Uncharacterized protein" ... 638 1.8e-62 1
UNIPROTKB|A7YWH5 - symbol:DKC1 "Uncharacterized protein" ... 638 1.8e-62 1
ZFIN|ZDB-GENE-031118-120 - symbol:dkc1 "dyskeratosis cong... 637 2.3e-62 1
MGI|MGI:1861727 - symbol:Dkc1 "dyskeratosis congenita 1, ... 636 3.0e-62 1
RGD|621780 - symbol:Dkc1 "dyskeratosis congenita 1, dyske... 635 3.8e-62 1
UNIPROTKB|O60832 - symbol:DKC1 "H/ACA ribonucleoprotein c... 630 1.3e-61 1
UNIPROTKB|F1P0Q8 - symbol:DKC1 "H/ACA ribonucleoprotein c... 629 1.6e-61 1
UNIPROTKB|Q5ZJH9 - symbol:DKC1 "H/ACA ribonucleoprotein c... 629 1.6e-61 1
WB|WBGene00010478 - symbol:K01G5.5 species:6239 "Caenorha... 607 3.5e-59 1
SGD|S000004165 - symbol:CBF5 "Pseudouridine synthase cata... 607 3.5e-59 1
DICTYBASE|DDB_G0281933 - symbol:nola4 "H/ACA RNP complex ... 603 9.3e-59 1
TAIR|locus:2080625 - symbol:NAP57 "homologue of NAP57" sp... 596 5.1e-58 1
ASPGD|ASPL0000074111 - symbol:swoC species:162425 "Emeric... 593 1.1e-57 1
CGD|CAL0001653 - symbol:orf19.1833 species:5476 "Candida ... 585 7.5e-57 1
UNIPROTKB|G4N1Q3 - symbol:MGG_07518 "Centromere/microtubu... 584 9.6e-57 1
POMBASE|SPAC29A4.04c - symbol:cbf5 "pseudouridylate synth... 580 2.5e-56 1
GENEDB_PFALCIPARUM|PF14_0174 - symbol:PF14_0174 "small nu... 573 1.4e-55 1
UNIPROTKB|Q8ILS0 - symbol:PF14_0174 "Pseudouridine syntha... 573 1.4e-55 1
UNIPROTKB|H7C0M1 - symbol:DKC1 "H/ACA ribonucleoprotein c... 518 9.5e-50 1
UNIPROTKB|E2RGN8 - symbol:E2RGN8 "Uncharacterized protein... 516 1.5e-49 1
UNIPROTKB|C9IYT0 - symbol:DKC1 "H/ACA ribonucleoprotein c... 464 5.0e-44 1
UNIPROTKB|H7C2Q9 - symbol:DKC1 "H/ACA ribonucleoprotein c... 411 2.1e-38 1
TIGR_CMR|CHY_1763 - symbol:CHY_1763 "tRNA pseudouridine s... 163 9.2e-16 2
UNIPROTKB|H7C2Q2 - symbol:DKC1 "H/ACA ribonucleoprotein c... 187 1.1e-14 1
UNIPROTKB|Q97QJ3 - symbol:truB "tRNA pseudouridine syntha... 140 9.6e-14 2
UNIPROTKB|P62190 - symbol:truB "tRNA pseudouridine syntha... 148 1.6e-13 2
TIGR_CMR|GSU_1591 - symbol:GSU_1591 "tRNA pseudouridine s... 134 5.0e-13 2
TIGR_CMR|ECH_0728 - symbol:ECH_0728 "tRNA pseudouridine s... 139 1.6e-11 2
TAIR|locus:2145708 - symbol:AT5G14460 species:3702 "Arabi... 144 1.7e-11 2
TIGR_CMR|CBU_1430 - symbol:CBU_1430 "tRNA pseudouridine s... 129 5.6e-11 2
UNIPROTKB|Q9KU78 - symbol:truB "tRNA pseudouridine syntha... 133 1.8e-10 2
TIGR_CMR|VC_0645 - symbol:VC_0645 "tRNA pseudouridine 55 ... 133 1.8e-10 2
TIGR_CMR|APH_0769 - symbol:APH_0769 "tRNA pseudouridine s... 127 4.6e-10 2
UNIPROTKB|P60340 - symbol:truB "tRNA pseudouridine 55 syn... 124 1.4e-09 2
TIGR_CMR|SPO_3837 - symbol:SPO_3837 "tRNA pseudouridine s... 121 3.7e-09 2
TIGR_CMR|NSE_0101 - symbol:NSE_0101 "tRNA pseudouridine s... 120 1.2e-08 2
TIGR_CMR|DET_0981 - symbol:DET_0981 "tRNA pseudouridine s... 121 3.8e-08 2
TIGR_CMR|CPS_2205 - symbol:CPS_2205 "tRNA pseudouridine s... 115 6.8e-08 2
RGD|1308502 - symbol:Trub1 "TruB pseudouridine (psi) synt... 112 2.2e-06 2
UNIPROTKB|E2QZY6 - symbol:TRUB1 "Uncharacterized protein"... 113 2.8e-06 2
UNIPROTKB|E1BEB7 - symbol:LOC530353 "Uncharacterized prot... 111 5.1e-06 2
UNIPROTKB|Q8WWH5 - symbol:TRUB1 "Probable tRNA pseudourid... 103 4.7e-05 2
TIGR_CMR|CJE_1245 - symbol:CJE_1245 "tRNA pseudouridine s... 96 5.3e-05 2
MGI|MGI:1919383 - symbol:Trub1 "TruB pseudouridine (psi) ... 118 8.9e-05 1
ZFIN|ZDB-GENE-080723-73 - symbol:trub1 "TruB pseudouridin... 87 0.00020 2
UNIPROTKB|E1BRM1 - symbol:TRUB1 "Uncharacterized protein"... 95 0.00063 2
>FB|FBgn0259937 [details] [associations]
symbol:Nop60B "Nucleolar protein at 60B" species:7227
"Drosophila melanogaster" [GO:0005730 "nucleolus"
evidence=ISS;NAS;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IMP] [GO:0006364 "rRNA processing" evidence=NAS;IMP]
[GO:0001522 "pseudouridine synthesis" evidence=IMP] [GO:0005634
"nucleus" evidence=NAS] [GO:0004730 "pseudouridylate synthase
activity" evidence=ISS] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0035220 "wing
disc development" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 EMBL:AE013599 GO:GO:0005730
GO:GO:0022008 GO:GO:0003723 GO:GO:0035220 GO:GO:0030529
GO:GO:0007281 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
eggNOG:COG0130 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 GeneTree:ENSGT00510000047092 EMBL:AF017230
EMBL:AF089837 EMBL:AF097634 EMBL:DQ841550 EMBL:DQ857345
EMBL:DQ857346 EMBL:AY089408 EMBL:BT030987 RefSeq:NP_001014547.1
RefSeq:NP_001163286.1 RefSeq:NP_001163287.1 RefSeq:NP_001163288.1
RefSeq:NP_001163289.1 RefSeq:NP_525120.1 UniGene:Dm.1944
ProteinModelPortal:O44081 SMR:O44081 DIP:DIP-20128N IntAct:O44081
MINT:MINT-1030866 STRING:O44081 PaxDb:O44081 PRIDE:O44081
EnsemblMetazoa:FBtr0072258 EnsemblMetazoa:FBtr0100213
EnsemblMetazoa:FBtr0300227 EnsemblMetazoa:FBtr0300228
EnsemblMetazoa:FBtr0300229 EnsemblMetazoa:FBtr0300861 GeneID:37873
KEGG:dme:Dmel_CG3333 CTD:37873 FlyBase:FBgn0259937
InParanoid:O44081 OMA:LKSEWIV OrthoDB:EOG4WSTRZ PhylomeDB:O44081
ChiTaRS:Nop60B GenomeRNAi:37873 NextBio:805804 Bgee:O44081
GermOnline:CG3333 Uniprot:O44081
Length = 508
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 134/215 (62%), Positives = 165/215 (76%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPPL--ISAVKRQLRVRTVY-DSKLLDYDETRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 260
>UNIPROTKB|F1RZ24 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005697
"telomerase holoenzyme complex" evidence=IEA] [GO:0003720
"telomerase activity" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
OMA:SHEPSAD GO:GO:0005697 GO:GO:0003720 EMBL:CU914693
Ensembl:ENSSSCT00000014017 Ensembl:ENSSSCT00000033158
Uniprot:F1RZ24
Length = 521
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 127/215 (59%), Positives = 157/215 (73%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 59 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 118
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 119 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 178
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 179 GALFQR---P----PL--IAAVKRQLRVRTVY-ESKMIEFDPERRLGIFWVSCEAGTYIR 228
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 229 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVT 263
Score = 117 (46.2 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELE--AAPNKKPTYMKS 155
KAS+K++MIKQGLLDKHGKP ++TPA++ + + P KK K+
Sbjct: 386 KASQKRLMIKQGLLDKHGKPTDSTPAAWTQDYVDYSDPAKKEAAAKA 432
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 46 HEVVAWIKRILRCEKT-GHSGTLDPKTS 72
H VVA IKR++ T L PK S
Sbjct: 361 HGVVAKIKRVIMERDTYPRKWGLGPKAS 388
>UNIPROTKB|E2R6Q8 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
Ensembl:ENSCAFT00000031188 Uniprot:E2R6Q8
Length = 464
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 127/215 (59%), Positives = 157/215 (73%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---P----PL--IAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVT 262
Score = 128 (50.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/55 (47%), Positives = 41/55 (74%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE-LEAAPN-KKPTYMKSNLISSDVT 163
KAS+K++MIKQGLLDKHGKP ++TPA+++ E ++ + + KK K+ + +VT
Sbjct: 385 KASQKRLMIKQGLLDKHGKPTDSTPATWMQEYVDYSDSAKKEVVAKAGTAAQEVT 439
Score = 36 (17.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 46 HEVVAWIKRILRCEKT-GHSGTLDPKTS 72
H +VA IKR++ T L PK S
Sbjct: 360 HGIVAKIKRVIMERDTYPRKWGLGPKAS 387
>UNIPROTKB|F6XRK3 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697
KO:K11131 OMA:TIHESKL GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
CTD:1736 Ensembl:ENSCAFT00000031188 EMBL:AAEX03027096
RefSeq:XP_549382.2 GeneID:492263 KEGG:cfa:492263 Uniprot:F6XRK3
Length = 517
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 127/215 (59%), Positives = 157/215 (73%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---P----PL--IAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVT 262
Score = 128 (50.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/55 (47%), Positives = 41/55 (74%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE-LEAAPN-KKPTYMKSNLISSDVT 163
KAS+K++MIKQGLLDKHGKP ++TPA+++ E ++ + + KK K+ + +VT
Sbjct: 385 KASQKRLMIKQGLLDKHGKPTDSTPATWMQEYVDYSDSAKKEVVAKAGTAAQEVT 439
Score = 36 (17.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 46 HEVVAWIKRILRCEKT-GHSGTLDPKTS 72
H +VA IKR++ T L PK S
Sbjct: 360 HGIVAKIKRVIMERDTYPRKWGLGPKAS 387
>UNIPROTKB|A7YWH5 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005697
"telomerase holoenzyme complex" evidence=IEA] [GO:0003720
"telomerase activity" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
OMA:SHEPSAD CTD:1736 HOVERGEN:HBG081442 OrthoDB:EOG4NS3BP
GO:GO:0005697 GO:GO:0003720 EMBL:DAAA02070028 EMBL:BC134581
IPI:IPI00705162 RefSeq:NP_001098865.1 UniGene:Bt.12564
STRING:A7YWH5 Ensembl:ENSBTAT00000017339 GeneID:525619
KEGG:bta:525619 InParanoid:A7YWH5 NextBio:20874200 Uniprot:A7YWH5
Length = 506
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 127/215 (59%), Positives = 157/215 (73%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---P----PL--IAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVT 262
Score = 124 (48.7 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/31 (70%), Positives = 29/31 (93%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA+++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWMQE 415
Score = 36 (17.7 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 46 HEVVAWIKRILRCEKT-GHSGTLDPKTS 72
H +VA IKR++ T L PK S
Sbjct: 360 HGIVAKIKRVIMERDTYPRKWGLGPKAS 387
>ZFIN|ZDB-GENE-031118-120 [details] [associations]
symbol:dkc1 "dyskeratosis congenita 1, dyskerin"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0060216 "definitive hemopoiesis"
evidence=IGI;IMP] [GO:0006364 "rRNA processing" evidence=IMP]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 ZFIN:ZDB-GENE-031118-120
GO:GO:0003723 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
eggNOG:COG0130 HOGENOM:HOG000231224 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GO:GO:0060216
HOVERGEN:HBG081442 OrthoDB:EOG4NS3BP EMBL:BC100010 IPI:IPI00654498
UniGene:Dr.33715 ProteinModelPortal:Q498Z9 STRING:Q498Z9
InParanoid:Q498Z9 ArrayExpress:Q498Z9 Uniprot:Q498Z9
Length = 507
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 127/228 (55%), Positives = 162/228 (71%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTPLP G +PL+R I +Y+R+G++NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 53 NFDKLNIRTAHYTPLPHGSNPLKRGIHDYVRSGFINLDKPANPSSHEVVAWIKRILRVEK 112
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC++RATRLVKSQQSAGKEY+ I +LH+A+EN + ++ +
Sbjct: 113 TGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVGIVRLHNALENEHQLARALECLT 172
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 173 GALFQR---P----PL--IAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 222
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSG+ E+D LVT + F+H
Sbjct: 223 TLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFDH 270
Score = 113 (44.8 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMI++GLLDKHGKPN +TP+ +
Sbjct: 380 KASQKKMMIQKGLLDKHGKPNNSTPSDW 407
Score = 37 (18.1 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 46 HEVVAWIKRILRCEKT-GHSGTLDPKTS 72
H VVA IKR++ T L PK S
Sbjct: 355 HGVVAKIKRVIMERDTYPRKWGLGPKAS 382
>MGI|MGI:1861727 [details] [associations]
symbol:Dkc1 "dyskeratosis congenita 1, dyskerin"
species:10090 "Mus musculus" [GO:0000154 "rRNA modification"
evidence=ISA;TAS] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003720 "telomerase activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0004730
"pseudouridylate synthase activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005697 "telomerase holoenzyme complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IC;TAS] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0030519 "snoRNP binding"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 MGI:MGI:1861727 GO:GO:0005730 GO:GO:0003723
GO:GO:0015030 GO:GO:0030519 InterPro:IPR015947 SUPFAM:SSF88697
eggNOG:COG0130 HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
CTD:1736 HOVERGEN:HBG081442 GO:GO:0005697 GO:GO:0003720
EMBL:AJ250973 EMBL:AJ250972 EMBL:AJ250974 EMBL:AJ250975
EMBL:AJ250976 EMBL:AJ250978 EMBL:AJ250980 EMBL:AJ250981
EMBL:AJ250979 EMBL:AJ250977 EMBL:AK136418 EMBL:AL808110
IPI:IPI00113635 RefSeq:NP_001025478.1 UniGene:Mm.291062
ProteinModelPortal:Q9ESX5 SMR:Q9ESX5 STRING:Q9ESX5
PhosphoSite:Q9ESX5 PaxDb:Q9ESX5 PRIDE:Q9ESX5
Ensembl:ENSMUST00000033776 GeneID:245474 KEGG:mmu:245474
InParanoid:Q3UWE5 NextBio:386727 Bgee:Q9ESX5 Genevestigator:Q9ESX5
GermOnline:ENSMUSG00000031403 GO:GO:0004730 GO:GO:0000154
Uniprot:Q9ESX5
Length = 509
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 127/215 (59%), Positives = 157/215 (73%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---P----PL--IAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVT 262
Score = 126 (49.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMIKQGLLDKHGKP +NTPA++
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTDNTPATW 412
Score = 36 (17.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 46 HEVVAWIKRILRCEKT-GHSGTLDPKTS 72
H +VA IKR++ T L PK S
Sbjct: 360 HGIVAKIKRVIMERDTYPRKWGLGPKAS 387
>RGD|621780 [details] [associations]
symbol:Dkc1 "dyskeratosis congenita 1, dyskerin" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 EMBL:Z34922 RGD:621780 GO:GO:0005730
GO:GO:0008283 GO:GO:0003723 GO:GO:0015030 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 CTD:1736 HOVERGEN:HBG081442
EMBL:BC099832 IPI:IPI00191460 PIR:A55163 RefSeq:NP_596910.1
UniGene:Rn.4223 ProteinModelPortal:P40615 IntAct:P40615
PhosphoSite:P40615 PRIDE:P40615 GeneID:170944 KEGG:rno:170944
NextBio:621465 Genevestigator:P40615 GO:GO:0005732 Uniprot:P40615
Length = 509
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 123/228 (53%), Positives = 162/228 (71%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+LNVRT HYTP+P G +PL+R I EY+R G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 59 NFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEK 118
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ + +LH+A+E A+ S+ +
Sbjct: 119 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLT 178
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S ++ D G+ W+ C+AGTY+R
Sbjct: 179 GALFQR---P----PL--IAAVKRQLRVRTIY-ESRVVEYDPERRLGVFWVSCEAGTYIR 228
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSG+ E D +VT +++++H
Sbjct: 229 TLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYLYDH 276
>UNIPROTKB|O60832 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0003720
"telomerase activity" evidence=IDA] [GO:0005697 "telomerase
holoenzyme complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008283 "cell proliferation" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007004 "telomere maintenance via telomerase"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0008283
GO:GO:0003723 GO:GO:0015030 InterPro:IPR015947 SUPFAM:SSF88697
GO:GO:0007004 GO:GO:0006364 eggNOG:COG0130 HOGENOM:HOG000231224
KO:K11131 OMA:TIHESKL GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 MIM:300240 CTD:1736
HOVERGEN:HBG081442 OrthoDB:EOG4NS3BP GO:GO:0005697 GO:GO:0003720
EMBL:AJ224481 EMBL:AJ010395 EMBL:AJ010396 EMBL:AF067008
EMBL:AF067023 EMBL:AF067009 EMBL:AF067010 EMBL:AF067011
EMBL:AF067012 EMBL:AF067013 EMBL:AF067014 EMBL:AF067015
EMBL:AF067016 EMBL:AF067017 EMBL:AF067018 EMBL:AF067019
EMBL:AF067020 EMBL:AF067021 EMBL:AF067022 EMBL:U59151 EMBL:JF279874
EMBL:AC109993 EMBL:BC009928 EMBL:BC010015 IPI:IPI00221394
RefSeq:NP_001354.1 UniGene:Hs.4747 ProteinModelPortal:O60832
SMR:O60832 IntAct:O60832 MINT:MINT-1379892 STRING:O60832
PhosphoSite:O60832 SWISS-2DPAGE:O60832 PaxDb:O60832
PeptideAtlas:O60832 PRIDE:O60832 DNASU:1736 Ensembl:ENST00000369550
GeneID:1736 KEGG:hsa:1736 UCSC:uc004fmm.3 GeneCards:GC0XP153984
HGNC:HGNC:2890 HPA:HPA000166 HPA:HPA000447 MIM:300126 MIM:305000
neXtProt:NX_O60832 Orphanet:1775 Orphanet:3322 PharmGKB:PA27344
PhylomeDB:O60832 ChiTaRS:DKC1 GenomeRNAi:1736 NextBio:7039
ArrayExpress:O60832 Bgee:O60832 CleanEx:HS_DKC1
Genevestigator:O60832 GermOnline:ENSG00000130826 Uniprot:O60832
Length = 514
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 126/215 (58%), Positives = 156/215 (72%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---P----PL--IAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVT 262
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>UNIPROTKB|F1P0Q8 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9031 "Gallus gallus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0003720 "telomerase activity"
evidence=IEA] [GO:0005697 "telomerase holoenzyme complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697 OMA:TIHESKL
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
GeneTree:ENSGT00510000047092 IPI:IPI00572837 GO:GO:0005697
GO:GO:0003720 EMBL:AADN02013221 Ensembl:ENSGALT00000008105
Uniprot:F1P0Q8
Length = 470
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 125/215 (58%), Positives = 157/215 (73%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNV T HYTPLP G +PL+R I +Y+R+G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 10 NFDKLNVLTTHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEK 69
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E+ A+ ++ +
Sbjct: 70 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLT 129
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S L+ D GI W+ C+AGTY+R
Sbjct: 130 GALFQR---P----PL--IAAVKRQLRVRTIY-ESKLVEYDPERRLGIFWVSCEAGTYIR 179
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVG QM ELRR RSGI E D +VT
Sbjct: 180 TLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVT 214
Score = 117 (46.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMI++GLLDKHGKPNE TP S+ E
Sbjct: 337 KASQKKMMIQKGLLDKHGKPNECTPDSWKKE 367
Score = 37 (18.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 46 HEVVAWIKRILRCEKT-GHSGTLDPKTS 72
H VVA IKR++ T L PK S
Sbjct: 312 HGVVAKIKRVIMERDTYPRKWGLGPKAS 339
>UNIPROTKB|Q5ZJH9 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9031 "Gallus gallus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0007004 "telomere maintenance via
telomerase" evidence=TAS] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0005654 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0007004 GO:GO:0006364
eggNOG:COG0130 HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982
GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
Reactome:REACT_115612 EMBL:AJ720455 IPI:IPI00572837
RefSeq:NP_001026286.1 UniGene:Gga.1015 ProteinModelPortal:Q5ZJH9
STRING:Q5ZJH9 PRIDE:Q5ZJH9 GeneID:422196 KEGG:gga:422196 CTD:1736
HOVERGEN:HBG081442 InParanoid:Q5ZJH9 OrthoDB:EOG4NS3BP
NextBio:20824864 Uniprot:Q5ZJH9
Length = 516
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 125/215 (58%), Positives = 157/215 (73%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNV T HYTPLP G +PL+R I +Y+R+G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 56 NFDKLNVLTTHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E+ A+ ++ +
Sbjct: 116 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLT 175
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S L+ D GI W+ C+AGTY+R
Sbjct: 176 GALFQR---P----PL--IAAVKRQLRVRTIY-ESKLVEYDPERRLGIFWVSCEAGTYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVG QM ELRR RSGI E D +VT
Sbjct: 226 TLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVT 260
Score = 117 (46.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMI++GLLDKHGKPNE TP S+ E
Sbjct: 383 KASQKKMMIQKGLLDKHGKPNECTPDSWKKE 413
Score = 37 (18.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 46 HEVVAWIKRILRCEKT-GHSGTLDPKTS 72
H VVA IKR++ T L PK S
Sbjct: 358 HGVVAKIKRVIMERDTYPRKWGLGPKAS 385
>WB|WBGene00010478 [details] [associations]
symbol:K01G5.5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0002119
GO:GO:0000003 GO:GO:0003723 GO:GO:0030529 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 eggNOG:COG0130 HOGENOM:HOG000231224
KO:K11131 OMA:TIHESKL GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
EMBL:Z92803 PIR:T23199 RefSeq:NP_499370.1 ProteinModelPortal:O17919
SMR:O17919 DIP:DIP-25862N IntAct:O17919 MINT:MINT-1040832
STRING:O17919 PaxDb:O17919 EnsemblMetazoa:K01G5.5.1
EnsemblMetazoa:K01G5.5.2 GeneID:176504 KEGG:cel:CELE_K01G5.5
UCSC:K01G5.5.1 CTD:176504 WormBase:K01G5.5 InParanoid:O17919
NextBio:892856 Uniprot:O17919
Length = 445
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 127/228 (55%), Positives = 153/228 (67%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRTNHYTP G SPL+R I+ YI +G+ NLDKPSNPSSHEVV+WIKRILRCEK
Sbjct: 46 NYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDR TRL KSQQ AGKEYI IFKLH VE+ K +K
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFKLHEEVEDDRK-------VK 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P ++ ++ + Y ++ I D GI C++GTYVR
Sbjct: 159 QALEKLTGALFQRPPL--ISAVKRQLRIRTVY-ENKFIEYDPAQQMGIFNCICESGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T CVH+GL+LG G QM ELRRNRSGI E + +VT ++++ T
Sbjct: 216 TICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYLLDT 263
Score = 111 (44.1 bits), Expect = 0.00091, P = 0.00091
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK 149
ASKKK M+K GLLDK GKPN+ TP S+ E KK
Sbjct: 374 ASKKKQMVKDGLLDKFGKPNDTTPKSWAKEYVQTSTKK 411
>SGD|S000004165 [details] [associations]
symbol:CBF5 "Pseudouridine synthase catalytic subunit of box
H/ACA snoRNPs" species:4932 "Saccharomyces cerevisiae" [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IC] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0000495 "box H/ACA snoRNA 3'-end processing"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0030686 "90S preribosome" evidence=IDA]
[GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0031429 "box H/ACA snoRNP complex"
evidence=IPI] [GO:0031118 "rRNA pseudouridine synthesis"
evidence=IMP] [GO:0006364 "rRNA processing" evidence=IEA;IMP]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IMP;IDA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 SGD:S000004165 GO:GO:0005737
GO:GO:0000775 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:BK006945 GO:GO:0003723 GO:GO:0005874 EMBL:U17246
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0030686 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451 OrthoDB:EOG4J6W08 GO:GO:0031429 GO:GO:0000495
GO:GO:0031118 GO:GO:0031120 EMBL:L12351 PIR:S41853
RefSeq:NP_013276.1 PDB:3U28 PDB:3UAI PDB:3ZV0 PDBsum:3U28
PDBsum:3UAI PDBsum:3ZV0 ProteinModelPortal:P33322 SMR:P33322
DIP:DIP-4472N IntAct:P33322 MINT:MINT-501145 STRING:P33322
PaxDb:P33322 PeptideAtlas:P33322 EnsemblFungi:YLR175W GeneID:850872
KEGG:sce:YLR175W CYGD:YLR175w GeneTree:ENSGT00510000047092
OMA:SHEPSAD NextBio:967209 Genevestigator:P33322 GermOnline:YLR175W
Uniprot:P33322
Length = 483
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 122/215 (56%), Positives = 152/215 (70%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+ K + +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLG 140
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P ++ ++ + Y +SNLI D + G+ W C+AGTY+R
Sbjct: 141 RSLENLTGALFQRPPL--ISAVKRQLRVRTIY-ESNLIEFDNKRNLGVFWASCEAGTYMR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 198 TLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVT 232
>DICTYBASE|DDB_G0281933 [details] [associations]
symbol:nola4 "H/ACA RNP complex subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0007004 "telomere maintenance via
telomerase" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0005697 "telomerase holoenzyme complex" evidence=ISS]
[GO:0003720 "telomerase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 dictyBase:DDB_G0281933 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0008283 GO:GO:0003723
EMBL:AAFI02000043 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0007004
GO:GO:0006364 eggNOG:COG0130 KO:K11131 OMA:TIHESKL GO:GO:0009982
GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
RefSeq:XP_640508.1 HSSP:Q57612 ProteinModelPortal:Q54T81
IntAct:Q54T81 STRING:Q54T81 PRIDE:Q54T81 EnsemblProtists:DDB0233679
GeneID:8623323 KEGG:ddi:DDB_G0281933 ProtClustDB:CLSZ2429005
GO:GO:0005697 GO:GO:0003720 Uniprot:Q54T81
Length = 540
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 120/215 (55%), Positives = 150/215 (69%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L+VRT HYTP+P G SPL+R I+EY++ G +NLDKPSNPSSHEVVAWI+ ILR K
Sbjct: 42 NYDQLSVRTGHYTPIPNGHSPLKRPIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQ AGKEYI I +LH A+E + SK +
Sbjct: 102 TGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYIGIVRLHGAIEGTTELSKAVDTLT 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P ++ L + T S L+ D + G+IW+ C+AGTY+R
Sbjct: 162 GALFQR--PPQKSAVKKRL--------RVRTIHNSKLLEFDPERNLGLIWVDCEAGTYIR 211
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL++GVG M ELRR RSGI SE+ G VT
Sbjct: 212 TLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGQVT 246
>TAIR|locus:2080625 [details] [associations]
symbol:NAP57 "homologue of NAP57" species:3702
"Arabidopsis thaliana" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA;IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005829 GO:GO:0009506 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
InterPro:IPR015947 SUPFAM:SSF88697 EMBL:AL138655 GO:GO:0006364
EMBL:AF234984 EMBL:AY049247 EMBL:BT003810 EMBL:F20038
IPI:IPI00538845 PIR:T47775 RefSeq:NP_191274.1 UniGene:At.19647
ProteinModelPortal:Q9LD90 SMR:Q9LD90 IntAct:Q9LD90 STRING:Q9LD90
PaxDb:Q9LD90 PRIDE:Q9LD90 EnsemblPlants:AT3G57150.1 GeneID:824882
KEGG:ath:AT3G57150 GeneFarm:4939 TAIR:At3g57150 eggNOG:COG0130
HOGENOM:HOG000231224 InParanoid:Q9LD90 KO:K11131 OMA:TIHESKL
PhylomeDB:Q9LD90 ProtClustDB:CLSN2684542 Genevestigator:Q9LD90
GermOnline:AT3G57150 GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451 Uniprot:Q9LD90
Length = 565
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 121/215 (56%), Positives = 151/215 (70%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTP+ G SPL+R +QEYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 49 NYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEK 108
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LHSAV +VAK ++
Sbjct: 109 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVAR------ 162
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L G + P ++ ++ + Y +S L+ D + W+ C+AGTY+R
Sbjct: 163 -ALESLTGAVFQRPPL--ISAVKRQLRIRTIY-ESKLLEYDADRHLVVFWVSCEAGTYIR 218
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVG M ELRR RSGI E + +VT
Sbjct: 219 TMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVT 253
>ASPGD|ASPL0000074111 [details] [associations]
symbol:swoC species:162425 "Emericella nidulans"
[GO:0030010 "establishment of cell polarity" evidence=IMP]
[GO:0051211 "anisotropic cell growth" evidence=IMP] [GO:0006897
"endocytosis" evidence=IMP] [GO:0048315 "conidium formation"
evidence=IMP] [GO:0004730 "pseudouridylate synthase activity"
evidence=ISA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] [GO:0000495 "box H/ACA
snoRNA 3'-end processing" evidence=IEA] [GO:0031118 "rRNA
pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005737 GO:GO:0000775 GO:GO:0003677
GO:GO:0003723 EMBL:BN001303 GO:GO:0005874 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0030686 EMBL:AACD01000163 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 OMA:TIHESKL GO:GO:0009982
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 EMBL:U59148 EMBL:AY057454
RefSeq:XP_682120.1 ProteinModelPortal:O43100 STRING:O43100
EnsemblFungi:CADANIAT00006202 GeneID:2868403 KEGG:ani:AN8851.2
OrthoDB:EOG4J6W08 GO:GO:0031429 GO:GO:0000495 GO:GO:0031118
GO:GO:0031120 Uniprot:O43100
Length = 481
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 118/215 (54%), Positives = 148/215 (68%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 29 NYDKLMVRTGHFTPIPAGSSPLKRDLKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 89 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P P + + + T +S L D G+ W+ C+AGTY+R
Sbjct: 149 TGALFQ--RP----PLISAVKRQL---RIRTIHESKLYEFDNERHLGVFWVSCEAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVGA M ELRR RSG SE +G+VT
Sbjct: 200 TLCVHLGLLLGVGAHMQELRRVRSGAMSENEGMVT 234
>CGD|CAL0001653 [details] [associations]
symbol:orf19.1833 species:5476 "Candida albicans" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0031120
"snRNA pseudouridine synthesis" evidence=IEA] [GO:0000495 "box
H/ACA snoRNA 3'-end processing" evidence=IEA] [GO:0031118 "rRNA
pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 CGD:CAL0001653 GO:GO:0005737 GO:GO:0000775
GO:GO:0005730 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GO:GO:0005874 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
eggNOG:COG0130 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 EMBL:U59149 EMBL:AACQ01000244
EMBL:AACQ01000240 RefSeq:XP_710717.1 RefSeq:XP_710755.1
ProteinModelPortal:O43101 STRING:O43101 GeneID:3647637
GeneID:3647682 KEGG:cal:CaO19.1833 KEGG:cal:CaO19.9391
Uniprot:O43101
Length = 479
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 119/215 (55%), Positives = 147/215 (68%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G +PL R I+ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 29 NYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSGVINLDKPSNPSSHEVVAWIKRILRVEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH + K K+ +
Sbjct: 89 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHEQL----KDDKE---LN 141
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P ++ ++ + Y S LI D G+ W C+AGTY+R
Sbjct: 142 RALENLTGALFQRPPL--ISAVKRQLRVRTVY-DSKLIEFDNKRGLGVFWASCEAGTYMR 198
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 199 TLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVT 233
>UNIPROTKB|G4N1Q3 [details] [associations]
symbol:MGG_07518 "Centromere/microtubule-binding protein
cbf5" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
EMBL:CM001233 GO:GO:0003723 GO:GO:0043581 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0030686 KO:K11131 GO:GO:0009982
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GO:GO:0031429 GO:GO:0000495
GO:GO:0031118 GO:GO:0031120 RefSeq:XP_003711432.1
ProteinModelPortal:G4N1Q3 EnsemblFungi:MGG_07518T0 GeneID:2683438
KEGG:mgr:MGG_07518 Uniprot:G4N1Q3
Length = 485
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 118/215 (54%), Positives = 146/215 (67%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL++RT H+TP+P G +PL+R I+ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 43 NYDKLHIRTGHFTPIPNGSTPLRRDIKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 102
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH V + +
Sbjct: 103 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKVPGGEPEFARALETL 162
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P P + + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 163 TGALFQ--RP----PLISAVKRQL---RIRTIHESKLIEFDNDRHLGVFWVSCEAGTYIR 213
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVGA M ELRR RSG E L T
Sbjct: 214 TLCVHLGLMLGVGAHMQELRRVRSGAMDETKDLHT 248
>POMBASE|SPAC29A4.04c [details] [associations]
symbol:cbf5 "pseudouridylate synthase Cbf5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000495 "box H/ACA
snoRNA 3'-end processing" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006399 "tRNA metabolic process" evidence=NAS] [GO:0009982
"pseudouridine synthase activity" evidence=ISO] [GO:0019843 "rRNA
binding" evidence=ISO] [GO:0031118 "rRNA pseudouridine synthesis"
evidence=ISO] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=ISO] [GO:0031429 "box H/ACA snoRNP complex" evidence=ISO]
[GO:0034513 "box H/ACA snoRNA binding" evidence=IC]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 PomBase:SPAC29A4.04c GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0019843
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451 OrthoDB:EOG4J6W08 GO:GO:0031429 GO:GO:0000495
GO:GO:0031118 GO:GO:0031120 PIR:T38485 RefSeq:NP_594878.1
ProteinModelPortal:O14007 STRING:O14007 EnsemblFungi:SPAC29A4.04c.1
GeneID:2542481 KEGG:spo:SPAC29A4.04c OMA:PTEWLRN NextBio:20803536
GO:GO:0034513 GO:GO:0006399 Uniprot:O14007
Length = 474
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 116/215 (53%), Positives = 147/215 (68%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VRT HYTP+P G +PL+R I EY+ +G +NLDKP+NPSSHEVVAW+K+ILR EK
Sbjct: 33 NFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVINLDKPANPSSHEVVAWVKKILRVEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLI+C DRATRLVKSQQSAGKEY+ + +LH +VE + +
Sbjct: 93 TGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYVCVLRLHDSVEGERNVASAIETLT 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P ++ ++ + Y +S LI D + + W C+AGTY+R
Sbjct: 153 GALFQR---P----PL--ISAVKRQLRIRSIY-ESKLIEFDNERNLAVFWASCEAGTYMR 202
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 203 TLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVT 237
>GENEDB_PFALCIPARUM|PF14_0174 [details] [associations]
symbol:PF14_0174 "small nucleolar
ribonucleoprotein, snoRNP, putative" species:5833 "Plasmodium
falciparum" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 EMBL:AE014187 InterPro:IPR015947
SUPFAM:SSF88697 HOGENOM:HOG000231224 KO:K11131 OMA:TIHESKL
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
ProtClustDB:CLSZ2429005 HSSP:Q9WZW0 RefSeq:XP_001348347.1
ProteinModelPortal:Q8ILS0 IntAct:Q8ILS0 MINT:MINT-1608535
PRIDE:Q8ILS0 EnsemblProtists:PF14_0174:mRNA GeneID:811755
KEGG:pfa:PF14_0174 EuPathDB:PlasmoDB:PF3D7_1417500 Uniprot:Q8ILS0
Length = 466
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 113/228 (49%), Positives = 153/228 (67%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+RT+H+TPLP G SP R I+EY++ G +NLDKPSNPSSHEVV+WI++ILRCEK
Sbjct: 30 NYDKLNIRTSHFTPLPMGNSPYSRNIEEYLKYGIINLDKPSNPSSHEVVSWIRKILRCEK 89
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++RATRLVKSQQ +GKEY+ + K HS +++ + +K
Sbjct: 90 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVCKFHSKPKSIEE-------VK 142
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + G + P + + + T S L+ D T + + W+KCQAGTY+R
Sbjct: 143 LVLNNFQGAIFQRPPLICAVKRQL---RVRTIYDSKLLDYDETNNVCVFWVKCQAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T C H+GL+LGVGA M ELRR +SG +E D + T ++I T
Sbjct: 200 TLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQYIYDT 247
>UNIPROTKB|Q8ILS0 [details] [associations]
symbol:PF14_0174 "Pseudouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 GO:GO:0003723 GO:GO:0006396
EMBL:AE014187 InterPro:IPR015947 SUPFAM:SSF88697
HOGENOM:HOG000231224 KO:K11131 OMA:TIHESKL GO:GO:0009982
GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 ProtClustDB:CLSZ2429005
HSSP:Q9WZW0 RefSeq:XP_001348347.1 ProteinModelPortal:Q8ILS0
IntAct:Q8ILS0 MINT:MINT-1608535 PRIDE:Q8ILS0
EnsemblProtists:PF14_0174:mRNA GeneID:811755 KEGG:pfa:PF14_0174
EuPathDB:PlasmoDB:PF3D7_1417500 Uniprot:Q8ILS0
Length = 466
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 113/228 (49%), Positives = 153/228 (67%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+RT+H+TPLP G SP R I+EY++ G +NLDKPSNPSSHEVV+WI++ILRCEK
Sbjct: 30 NYDKLNIRTSHFTPLPMGNSPYSRNIEEYLKYGIINLDKPSNPSSHEVVSWIRKILRCEK 89
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++RATRLVKSQQ +GKEY+ + K HS +++ + +K
Sbjct: 90 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVCKFHSKPKSIEE-------VK 142
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + G + P + + + T S L+ D T + + W+KCQAGTY+R
Sbjct: 143 LVLNNFQGAIFQRPPLICAVKRQL---RVRTIYDSKLLDYDETNNVCVFWVKCQAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T C H+GL+LGVGA M ELRR +SG +E D + T ++I T
Sbjct: 200 TLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQYIYDT 247
>UNIPROTKB|H7C0M1 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002501 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0006396
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425 EMBL:AC109993
HGNC:HGNC:2890 ChiTaRS:DKC1 ProteinModelPortal:H7C0M1
Ensembl:ENST00000437719 Uniprot:H7C0M1
Length = 229
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 104/188 (55%), Positives = 126/188 (67%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 44 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 103
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 104 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 163
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLST---GIIWLKCQAGT 177
L + P L +K Y + + L GI W+ C+AGT
Sbjct: 164 GALFQR--PPLIAAVKRQLRVRTIYESKMIEYDPERRLGAAFLLCVCILGIFWVSCEAGT 221
Query: 178 YVRTYCVH 185
Y+RT CVH
Sbjct: 222 YIRTLCVH 229
>UNIPROTKB|E2RGN8 [details] [associations]
symbol:E2RGN8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR002478 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
GeneTree:ENSGT00510000047092 EMBL:AAEX03016940
Ensembl:ENSCAFT00000014816 Uniprot:E2RGN8
Length = 498
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 108/211 (51%), Positives = 140/211 (66%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NF+KLNVR+ HYTPLP G PL+ I ++ R G++NLDKPSNPSSHEVVAW++RILR K
Sbjct: 57 NFEKLNVRSTHYTPLPCGSHPLKGEIGDHSRTGFINLDKPSNPSSHEVVAWVRRILRV-K 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
T H GTLDPK +GC +VCI+RAT SAGKEY+ I +LHSA+E + S+ +
Sbjct: 116 TAHGGTLDPKVAGCSLVCIERATAW-----SAGKEYVGIVQLHSAIEGGTQLSRALETLT 170
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 171 GALFQR---P----PL--IAAVKRQLRVRTVY-ESKMIEYDPDGRLGIFWVSCEAGTYIR 220
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
T CVH+GL+LGVG QM ELRR RSG+ SE+D
Sbjct: 221 TLCVHVGLLLGVGGQMQELRRVRSGVMSEKD 251
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 21/31 (67%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K++MIKQGLLDKHGKP +TPA+++ E
Sbjct: 375 KASQKRLMIKQGLLDKHGKPTGSTPATWMQE 405
>UNIPROTKB|C9IYT0 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR002501 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01509 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
HOGENOM:HOG000231224 GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
EMBL:AC109993 HGNC:HGNC:2890 ChiTaRS:DKC1 IPI:IPI00852712
ProteinModelPortal:C9IYT0 SMR:C9IYT0 STRING:C9IYT0 PRIDE:C9IYT0
Ensembl:ENST00000413910 ArrayExpress:C9IYT0 Bgee:C9IYT0
Uniprot:C9IYT0
Length = 259
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 85/114 (74%), Positives = 99/114 (86%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASK 114
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSR 171
>UNIPROTKB|H7C2Q9 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002501 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0006396
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 EMBL:AC109993 HGNC:HGNC:2890
ChiTaRS:DKC1 ProteinModelPortal:H7C2Q9 Ensembl:ENST00000452771
Bgee:H7C2Q9 Uniprot:H7C2Q9
Length = 169
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 76/93 (81%), Positives = 84/93 (90%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 44 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 103
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAG 93
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAG
Sbjct: 104 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAG 136
>TIGR_CMR|CHY_1763 [details] [associations]
symbol:CHY_1763 "tRNA pseudouridine synthase B"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] HAMAP:MF_01080
InterPro:IPR002501 InterPro:IPR014780 InterPro:IPR020103
Pfam:PF01509 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0008033 eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431
HOGENOM:HOG000231225 RefSeq:YP_360583.1 ProteinModelPortal:Q3ABA1
STRING:Q3ABA1 GeneID:3728168 KEGG:chy:CHY_1763 PATRIC:21276639
OMA:QVPSKVS BioCyc:CHYD246194:GJCN-1762-MONOMER Uniprot:Q3ABA1
Length = 288
Score = 163 (62.4 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 40/125 (32%), Positives = 70/125 (56%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS- 91
G++NL KP +SH+VVA++++ L+ K GH GTLDP +G L V + +ATRL++ ++
Sbjct: 3 GFINLLKPPGMTSHDVVAYVRKKLKTGKVGHLGTLDPAAAGVLPVAVGQATRLIEYLENV 62
Query: 92 AGKEYIS--IFKLHSA---VENVAKASKKKMMIKQGLLDK-----HGKPNENTPASYLAE 141
A KEY++ +F + +A +E K + G ++K HG+ + P + +
Sbjct: 63 AMKEYLAEIVFGITTATWDMEGEILEQKDASFLTAGDIEKVLGHFHGEIEQTPPLASAVK 122
Query: 142 LEAAP 146
+ P
Sbjct: 123 VSGKP 127
Score = 73 (30.8 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
++++C GTY+R+ +G +L GA + L R RSG
Sbjct: 166 LYIRCSRGTYIRSIANEIGNLLKTGATLKFLLRTRSG 202
>UNIPROTKB|H7C2Q2 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002478 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 PROSITE:PS50890
SMART:SM00359 GO:GO:0003723 GO:GO:0006396 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0009982 GO:GO:0001522 PANTHER:PTHR23127
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 EMBL:AC109993
HGNC:HGNC:2890 ChiTaRS:DKC1 ProteinModelPortal:H7C2Q2
Ensembl:ENST00000426673 Uniprot:H7C2Q2
Length = 208
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 33/49 (67%), Positives = 41/49 (83%)
Query: 167 GIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
GI W+ C+AGTY+RT CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 2 GIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVT 50
Score = 120 (47.3 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 173 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 203
Score = 36 (17.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 46 HEVVAWIKRILRCEKT-GHSGTLDPKTS 72
H +VA IKR++ T L PK S
Sbjct: 148 HGIVAKIKRVIMERDTYPRKWGLGPKAS 175
>UNIPROTKB|Q97QJ3 [details] [associations]
symbol:truB "tRNA pseudouridine synthase B" species:170187
"Streptococcus pneumoniae TIGR4" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR015225 InterPro:IPR020103 Pfam:PF01509 Pfam:PF09142
GO:GO:0003723 EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV PIR:F95140 RefSeq:NP_345679.1 ProteinModelPortal:Q97QJ3
EnsemblBacteria:EBSTRT00000026891 GeneID:931726 KEGG:spn:SP_1212
PATRIC:19706819 ProtClustDB:PRK02484 Uniprot:Q97QJ3
Length = 292
Score = 140 (54.3 bits), Expect = 9.6e-14, Sum P(2) = 9.6e-14
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEY 96
GK Y
Sbjct: 63 GKIY 66
Score = 91 (37.1 bits), Expect = 9.6e-14, Sum P(2) = 9.6e-14
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 141 ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMI 197
E+E P ++ T + +++ IS D L+ +KC GTY+RT V +G LG A M
Sbjct: 137 EVER-PERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVDLGEKLGYAAHMS 195
Query: 198 ELRR-NRSGIQSEE 210
L R + +G+Q E+
Sbjct: 196 HLTRTSAAGLQLED 209
>UNIPROTKB|P62190 [details] [associations]
symbol:truB "tRNA pseudouridine synthase B" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR015225 InterPro:IPR020103 Pfam:PF01509 Pfam:PF09142
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003723 GO:GO:0008033
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
TIGRFAMs:TIGR00431 HOGENOM:HOG000231225 OMA:QVPSKVS PIR:H70884
RefSeq:NP_217309.1 RefSeq:NP_337368.1 RefSeq:YP_006516239.1
PDB:1SGV PDBsum:1SGV ProteinModelPortal:P62190 SMR:P62190
PRIDE:P62190 EnsemblBacteria:EBMYCT00000003082
EnsemblBacteria:EBMYCT00000069933 GeneID:13317578 GeneID:888587
GeneID:925419 KEGG:mtc:MT2862.1 KEGG:mtu:Rv2793c
KEGG:mtv:RVBD_2793c PATRIC:18128048 TubercuList:Rv2793c
ProtClustDB:PRK03287 EvolutionaryTrace:P62190 Uniprot:P62190
Length = 298
Score = 148 (57.2 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ I+RAT+++ +A
Sbjct: 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66
Query: 93 GKEYISIFKL 102
K Y + +L
Sbjct: 67 PKSYAATIRL 76
Score = 78 (32.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+ C +GTY+R +G LGVG + LRR R G
Sbjct: 171 IDCSSGTYIRALARDLGDALGVGGHVTALRRTRVG 205
>TIGR_CMR|GSU_1591 [details] [associations]
symbol:GSU_1591 "tRNA pseudouridine synthase B"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV RefSeq:NP_952642.1 ProteinModelPortal:P60344
GeneID:2687358 KEGG:gsu:GSU1591 PATRIC:22026027
ProtClustDB:CLSK2522239 BioCyc:GSUL243231:GH27-1625-MONOMER
Uniprot:P60344
Length = 304
Score = 134 (52.2 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++ +DKP +SH+VVA +++ LR +K GH+GTLDP +G L V + T+ + +
Sbjct: 3 GFIVIDKPIGLTSHDVVARVRQTLRQKKAGHTGTLDPFATGVLPVAVGEGTKAIPYLDES 62
Query: 93 GKEYISIFKLHSAVE 107
K Y + L +A +
Sbjct: 63 TKVYRATLILGAATD 77
Score = 93 (37.8 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 22/50 (44%), Positives = 26/50 (52%)
Query: 156 NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+L+ + L L C GTYVRT MG LG GA + ELRR SG
Sbjct: 148 SLVVDSIDLPLVTFTLSCSRGTYVRTLAHDMGERLGCGAHLTELRRLSSG 197
>TIGR_CMR|ECH_0728 [details] [associations]
symbol:ECH_0728 "tRNA pseudouridine synthase B"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
ProtClustDB:CLSK2516851 RefSeq:YP_507531.1
ProteinModelPortal:Q2GGA2 STRING:Q2GGA2 GeneID:3927663
KEGG:ech:ECH_0728 PATRIC:20576900 OMA:PPKYSAK
BioCyc:ECHA205920:GJNR-731-MONOMER Uniprot:Q2GGA2
Length = 296
Score = 139 (54.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++NLDKP SS V +K+IL +K GH+GTLDP SG L + I AT+++
Sbjct: 3 GWINLDKPCGISSASAVNLVKKILNVKKVGHAGTLDPLASGVLPIAIGEATKVMPYAVDV 62
Query: 93 GKEYI 97
K Y+
Sbjct: 63 VKSYL 67
Score = 71 (30.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 153 MKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+K L+S+D + +L C+ G YVR+ +G+ LG + +L+R R G
Sbjct: 146 LKLKLLSADQENNKADFYLLCKKGVYVRSIARDLGIELGCLGYVRKLQRVRVG 198
>TAIR|locus:2145708 [details] [associations]
symbol:AT5G14460 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005215 "transporter activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA;ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;TAS] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 GO:GO:0006396
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
UniGene:At.31932 UniGene:At.54843 KO:K03177 PANTHER:PTHR13767
TIGRFAMs:TIGR00431 EMBL:AK226674 IPI:IPI00542969 RefSeq:NP_196950.2
ProteinModelPortal:Q0WVR7 SMR:Q0WVR7 STRING:Q0WVR7 PaxDb:Q0WVR7
PRIDE:Q0WVR7 EnsemblPlants:AT5G14460.1 GeneID:831297
KEGG:ath:AT5G14460 TAIR:At5g14460 HOGENOM:HOG000006019
InParanoid:Q0WVR7 OMA:IWQVPPM PhylomeDB:Q0WVR7
ProtClustDB:CLSN2708543 Genevestigator:Q0WVR7 Uniprot:Q0WVR7
Length = 540
Score = 144 (55.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 37 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEY 96
++KP +S V ++R+++ +K GH+GTLDP +G LIVC+ +AT++V Q K Y
Sbjct: 326 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMIKGY 385
Query: 97 ISIFKLHSAVENV 109
+F+L A +
Sbjct: 386 SGVFRLGEATSTL 398
Score = 74 (31.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 173 CQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
C GTY+R+ C + LG A + LRR+ G S D
Sbjct: 486 CSKGTYIRSLCADLAKALGSCAHLTALRRDSIGEYSAND 524
>TIGR_CMR|CBU_1430 [details] [associations]
symbol:CBU_1430 "tRNA pseudouridine synthase B"
species:227377 "Coxiella burnetii RSA 493" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0008033 InterPro:IPR015947
SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431
OMA:LGCGAYV HOGENOM:HOG000231223 ProtClustDB:PRK05033
RefSeq:YP_338283.1 ProteinModelPortal:Q4AAX7 SMR:Q4AAX7
GeneID:1209336 KEGG:cbu:CBU_1430 PATRIC:17931611
BioCyc:CBUR227377:GJ7S-1417-MONOMER Uniprot:Q4AAX7
Length = 309
Score = 129 (50.5 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 31/115 (26%), Positives = 59/115 (51%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP +S+E + +KR+ +K GH+G+LDP +G L +C+ AT+ + A
Sbjct: 16 GVLLLDKPGGMTSNEALQRVKRLFHAKKAGHTGSLDPLATGLLPICLGEATKFSQFLLEA 75
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPN 147
K Y S+ K V + S+ ++ ++ + + E T ++ ++ P+
Sbjct: 76 DKSY-SV-KGRLGVRTASGDSESPILTERPIPKLTKRALEKTLFAFRGVIDQTPS 128
Score = 80 (33.2 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLV 214
+++ C GTY+RT +G LG GA ++ LRR R ED ++
Sbjct: 174 LYVHCSKGTYIRTLLDDVGEALGCGAHVVALRRLRVA-HYHEDQMI 218
>UNIPROTKB|Q9KU78 [details] [associations]
symbol:truB "tRNA pseudouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006400 InterPro:IPR015947 SUPFAM:SSF88697
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 OMA:LGCGAYV
ProtClustDB:PRK05033 PIR:C82298 RefSeq:NP_230294.1
ProteinModelPortal:Q9KU78 SMR:Q9KU78 DNASU:2615435 GeneID:2615435
KEGG:vch:VC0645 PATRIC:20080403 Uniprot:Q9KU78
Length = 312
Score = 133 (51.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP+ SS++ + +KR+ EK GH+G LDP +G L +C+ AT+ + +
Sbjct: 12 GVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATKFSQFLLDS 71
Query: 93 GKEYISIFKL 102
K Y I KL
Sbjct: 72 DKRYRVIAKL 81
Score = 70 (29.7 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 173 CQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
C GTY+RT +G +LG GA + LRR
Sbjct: 173 CSKGTYIRTIVDDLGEMLGCGAHVTMLRR 201
>TIGR_CMR|VC_0645 [details] [associations]
symbol:VC_0645 "tRNA pseudouridine 55 synthase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR015240 InterPro:IPR020103 Pfam:PF01509 Pfam:PF09157
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
TIGRFAMs:TIGR00431 OMA:LGCGAYV ProtClustDB:PRK05033 PIR:C82298
RefSeq:NP_230294.1 ProteinModelPortal:Q9KU78 SMR:Q9KU78
DNASU:2615435 GeneID:2615435 KEGG:vch:VC0645 PATRIC:20080403
Uniprot:Q9KU78
Length = 312
Score = 133 (51.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP+ SS++ + +KR+ EK GH+G LDP +G L +C+ AT+ + +
Sbjct: 12 GVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATKFSQFLLDS 71
Query: 93 GKEYISIFKL 102
K Y I KL
Sbjct: 72 DKRYRVIAKL 81
Score = 70 (29.7 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 173 CQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
C GTY+RT +G +LG GA + LRR
Sbjct: 173 CSKGTYIRTIVDDLGEMLGCGAHVTMLRR 201
>TIGR_CMR|APH_0769 [details] [associations]
symbol:APH_0769 "tRNA pseudouridine synthase B"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 RefSeq:YP_505348.1
ProteinModelPortal:Q2GJV3 STRING:Q2GJV3 GeneID:3930851
KEGG:aph:APH_0769 PATRIC:20950230 HOGENOM:HOG000231225 OMA:LGCGAYV
ProtClustDB:CLSK2516851 BioCyc:APHA212042:GHPM-785-MONOMER
Uniprot:Q2GJV3
Length = 300
Score = 127 (49.8 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
++ G++N+DKP SS VV +K++L+C K GH+GTLDP +G L + AT+
Sbjct: 1 MKHGWLNIDKPYGVSSGSVVGKLKKMLQC-KVGHAGTLDPLATGVLPIAFGEATKTTNYA 59
Query: 90 QSAGKEY 96
K Y
Sbjct: 60 TDTLKSY 66
Score = 73 (30.8 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
E+ AP + + L+S D +T + + C G YVR +G+ LG + LR
Sbjct: 135 EVALAP-RSVCITEIELLSVDSGSNTADLRITCGKGVYVRAVARDLGITLGCYGYVARLR 193
Query: 201 RNRSGIQSEEDGLVTFRQ 218
R G +E + +VT ++
Sbjct: 194 RTMVGPFTEAN-IVTLQE 210
>UNIPROTKB|P60340 [details] [associations]
symbol:truB "tRNA pseudouridine 55 synthase" species:83333
"Escherichia coli K-12" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;IMP] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 GO:GO:0008033 InterPro:IPR015947 SUPFAM:SSF88697
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:X13775 KO:K03177 PANTHER:PTHR13767 EMBL:X13270
TIGRFAMs:TIGR00431 OMA:LGCGAYV HOGENOM:HOG000231223
ProtClustDB:PRK05033 EMBL:S79856 PIR:S01916 RefSeq:NP_417635.1
RefSeq:YP_491353.1 PDB:1K8W PDB:1R3F PDB:1ZL3 PDBsum:1K8W
PDBsum:1R3F PDBsum:1ZL3 ProteinModelPortal:P60340 SMR:P60340
IntAct:P60340 PRIDE:P60340 EnsemblBacteria:EBESCT00000000040
EnsemblBacteria:EBESCT00000000041 EnsemblBacteria:EBESCT00000017815
GeneID:12933440 GeneID:947687 KEGG:ecj:Y75_p3088 KEGG:eco:b3166
PATRIC:32121750 EchoBASE:EB1164 EcoGene:EG11177
BioCyc:EcoCyc:EG11177-MONOMER BioCyc:ECOL316407:JW3135-MONOMER
BioCyc:MetaCyc:EG11177-MONOMER EvolutionaryTrace:P60340
Genevestigator:P60340 Uniprot:P60340
Length = 314
Score = 124 (48.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP SS++ + +KRI + GH+G LDP +G L +C+ AT+ + +
Sbjct: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72
Query: 93 GKEYISIFKL 102
K Y I +L
Sbjct: 73 DKRYRVIARL 82
Score = 73 (30.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
+ C GTY+RT +G LG GA +I LRR
Sbjct: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRR 202
>TIGR_CMR|SPO_3837 [details] [associations]
symbol:SPO_3837 "tRNA pseudouridine synthase B"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV RefSeq:YP_169025.1 ProteinModelPortal:Q5LLT4
GeneID:3196374 KEGG:sil:SPO3837 PATRIC:23381177
ProtClustDB:PRK05389 Uniprot:Q5LLT4
Length = 303
Score = 121 (47.7 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G++ +DKP+ +S VV ++ L K GH+GTLDP+ +G L + + AT+ V
Sbjct: 11 SGWLVVDKPAGMTSTAVVNKVRWALGANKAGHAGTLDPEATGVLAIALGEATKTVPYITD 70
Query: 92 AGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNK 148
A K Y+ +L A N A + +I L + ++ A +L ++ P K
Sbjct: 71 ALKAYVFTVRLGQAT-NTDDAEGE--VIASSDLRPTDEQIKDALAPFLGDIMQVPPK 124
Score = 72 (30.4 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
++ + C G YVR+ +G LG + ELRR SG EDG +T Q
Sbjct: 169 LLEMTCGKGGYVRSIARDLGAALGCYGHVRELRRIWSGPFEAEDG-ITLEQ 218
>TIGR_CMR|NSE_0101 [details] [associations]
symbol:NSE_0101 "tRNA pseudouridine synthase B"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0130
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K03177
PANTHER:PTHR13767 TIGRFAMs:TIGR00431 OMA:KKSFRNE
HOGENOM:HOG000231223 RefSeq:YP_506001.1 ProteinModelPortal:Q2GEU5
STRING:Q2GEU5 GeneID:3931563 KEGG:nse:NSE_0101 PATRIC:22680305
ProtClustDB:CLSK2528072 BioCyc:NSEN222891:GHFU-137-MONOMER
Uniprot:Q2GEU5
Length = 235
Score = 120 (47.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G+++LDK S SS + +KR +K G+ GTLDP +G L++ + R T+L+ +
Sbjct: 12 GWLSLDKESGISSFGALKLLKRKFGVKKAGYVGTLDPIATGVLVIALGRTTKLIPQFDDS 71
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNK 148
KEY F + E S+ ++ GL+ P S+L E P K
Sbjct: 72 FKEYE--FAIEWGAETDTLDSEGAVLRNGGLIPSTSAILGVLP-SFLGEQLQVPPK 124
Score = 63 (27.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 23/63 (36%), Positives = 29/63 (46%)
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
+ C GTYVR + L A + ++RR RSGI + G E EHIV V
Sbjct: 171 VSCSKGTYVRALARDIARKLESLAFVSKIRRTRSGIFNVTSG--NKLSEITKEHIVPPSV 228
Query: 231 -LC 232
LC
Sbjct: 229 PLC 231
>TIGR_CMR|DET_0981 [details] [associations]
symbol:DET_0981 "tRNA pseudouridine synthase B"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV RefSeq:YP_181704.1 ProteinModelPortal:Q3Z7U5
STRING:Q3Z7U5 GeneID:3229762 KEGG:det:DET0981 PATRIC:21609011
ProtClustDB:PRK00130 BioCyc:DETH243164:GJNF-982-MONOMER
Uniprot:Q3Z7U5
Length = 300
Score = 121 (47.7 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N++KP +S VV+ ++ I +K GH G LDP +G + V + ATRL++ S
Sbjct: 3 GILNINKPPGLTSFGVVSKVRHIYSQKKVGHGGMLDPSATGVIPVFLGSATRLIEYLSSV 62
Query: 93 GKEYISIFKLHSAVEN 108
K Y++ +L + ++
Sbjct: 63 RKTYLAEIELGTETDS 78
Score = 62 (26.9 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
E+E P K Y L + L I +C GTY+R+ +G LG GA + L
Sbjct: 136 EVERNPRKAAIYGIEFLGFASPVLRLRI---ECGHGTYIRSIAFDLGRKLGCGAYLKTLV 192
Query: 201 RNRSG 205
R G
Sbjct: 193 RESYG 197
Score = 40 (19.1 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNK 148
+K + + +G P T + LA+LEAA NK
Sbjct: 188 LKTLVRESYG-PFHLTTSLDLADLEAAENK 216
>TIGR_CMR|CPS_2205 [details] [associations]
symbol:CPS_2205 "tRNA pseudouridine synthase B"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 InterPro:IPR015947
SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431
OMA:LGCGAYV RefSeq:YP_268930.1 STRING:Q482T7 GeneID:3520371
KEGG:cps:CPS_2205 PATRIC:21467525 HOGENOM:HOG000231223
ProtClustDB:PRK05033 BioCyc:CPSY167879:GI48-2275-MONOMER
Uniprot:Q482T7
Length = 318
Score = 115 (45.5 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP SS+ + +KRI +K GH+G LDP +G L +C+ T+ +
Sbjct: 12 GVLLLDKPHGLSSNHALQTVKRIYFAQKAGHTGALDPLATGMLPICLGEGTKFSQYLLDT 71
Query: 93 GKEYISIFKL 102
K Y KL
Sbjct: 72 DKTYQVTAKL 81
Score = 68 (29.0 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
GTY+RT +G +LG GA + LRR+ G
Sbjct: 176 GTYIRTIVDDLGELLGCGAHVAHLRRSAVG 205
>RGD|1308502 [details] [associations]
symbol:Trub1 "TruB pseudouridine (psi) synthase homolog 1 (E.
coli)" species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 RGD:1308502
GO:GO:0003723 GO:GO:0008033 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
GeneTree:ENSGT00530000063611 CTD:142940 HOGENOM:HOG000063679
HOVERGEN:HBG094094 OMA:PFFTLDV OrthoDB:EOG4S4PGQ TIGRFAMs:TIGR00431
EMBL:BC087683 IPI:IPI00372539 RefSeq:NP_001012173.1
UniGene:Rn.24324 HSSP:P62190 ProteinModelPortal:Q5M934
STRING:Q5M934 PRIDE:Q5M934 Ensembl:ENSRNOT00000023309 GeneID:361775
KEGG:rno:361775 InParanoid:Q5M934 NextBio:677570
Genevestigator:Q5M934 GermOnline:ENSRNOG00000017321 Uniprot:Q5M934
Length = 341
Score = 112 (44.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 36/113 (31%), Positives = 53/113 (46%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSA---VE 107
W KR + K GH GTLD G L+V I R T+++ S S K YI+ +L A ++
Sbjct: 95 WNKRQKQTLKVGHGGTLDSAAQGVLVVGIGRGTKMLTSMLSGSKRYIATGELGKATDTLD 154
Query: 108 NVAKASKKKMMIK------QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMK 154
+ K +++K K +G+L K P Y A L+ + T MK
Sbjct: 155 STGKVTEEKPYDKITQEDIEGILQKFTGNIMQVPPLYSA-LKKDGQRLSTLMK 206
Score = 58 (25.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 142 LEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
+EA P + T +L+ T + ++C G Y+R+ +G L A ++EL R
Sbjct: 211 VEARPARPVTVHSISLLKYQPPFFT--LDVECGGGFYIRSLVSDIGKELSSCATVLELTR 268
Query: 202 NRSG 205
+ G
Sbjct: 269 TKQG 272
>UNIPROTKB|E2QZY6 [details] [associations]
symbol:TRUB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K03177
PANTHER:PTHR13767 GeneTree:ENSGT00530000063611 CTD:142940
OMA:PFFTLDV TIGRFAMs:TIGR00431 EMBL:AAEX03015547 RefSeq:XP_544030.2
Ensembl:ENSCAFT00000018547 GeneID:486900 KEGG:cfa:486900
NextBio:20860605 Uniprot:E2QZY6
Length = 350
Score = 113 (44.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 36/113 (31%), Positives = 53/113 (46%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSA---VE 107
W KR + K GH GTLD G L+V I R T+++ S K YI+I +L A ++
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGRGTKMLTGMLSGSKRYIAIGELGKATDTLD 163
Query: 108 NVAKASKKKMMIK------QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMK 154
+ K +++K K +G+L K P Y A L+ + T MK
Sbjct: 164 STGKVTEEKPYDKITQEDIEGILQKFTGNIMQVPPLYSA-LKKDGQRLSTLMK 215
Score = 56 (24.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 142 LEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
+EA P + T +L T + ++C G Y+R+ +G L A ++EL R
Sbjct: 220 VEAKPARPVTVYSLSLQKFQPPFFT--LDVECGGGFYIRSLVSDIGKELSSCANVLELTR 277
Query: 202 NRSG-IQSEEDGL 213
+ G EE L
Sbjct: 278 TKQGPFTLEEHAL 290
>UNIPROTKB|E1BEB7 [details] [associations]
symbol:LOC530353 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K03177
PANTHER:PTHR13767 GeneTree:ENSGT00530000063611 OMA:PFFTLDV
TIGRFAMs:TIGR00431 EMBL:DAAA02059285 EMBL:DAAA02059286
IPI:IPI00716593 RefSeq:XP_003584154.1 RefSeq:XP_003587944.1
Ensembl:ENSBTAT00000017209 GeneID:530353 KEGG:bta:530353
Uniprot:E1BEB7
Length = 352
Score = 111 (44.1 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENV 109
W KR + K GH GTLD G L+V I R T+++ S S K Y++I +L A + +
Sbjct: 106 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGRGTKMLTSMLSGSKRYVAIGELGKATDTL 164
Score = 56 (24.8 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 142 LEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
+EA P + T +L T + ++C G Y+R+ +G L A ++EL R
Sbjct: 222 VEAKPARPVTVYSLSLQKFQPPFFT--LDVECGGGFYIRSLVSDIGKELSSCANVLELTR 279
Query: 202 NRSG-IQSEEDGL 213
+ G EE L
Sbjct: 280 TKQGPFTLEEHAL 292
>UNIPROTKB|Q8WWH5 [details] [associations]
symbol:TRUB1 "Probable tRNA pseudouridine synthase 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 EMBL:AF448144 EMBL:BX648709
EMBL:AK312805 EMBL:AK223567 EMBL:AL355340 EMBL:BC030601
IPI:IPI00103341 RefSeq:NP_631908.1 UniGene:Hs.21187 HSSP:Q9WZW0
ProteinModelPortal:Q8WWH5 SMR:Q8WWH5 STRING:Q8WWH5
PhosphoSite:Q8WWH5 DMDM:74751577 PaxDb:Q8WWH5 PeptideAtlas:Q8WWH5
PRIDE:Q8WWH5 DNASU:142940 Ensembl:ENST00000298746 GeneID:142940
KEGG:hsa:142940 UCSC:uc001lcd.3 CTD:142940 GeneCards:GC10P116687
HGNC:HGNC:16060 HPA:HPA037914 MIM:610726 neXtProt:NX_Q8WWH5
PharmGKB:PA38086 HOGENOM:HOG000063679 HOVERGEN:HBG094094
InParanoid:Q8WWH5 OMA:PFFTLDV OrthoDB:EOG4S4PGQ PhylomeDB:Q8WWH5
GenomeRNAi:142940 NextBio:84645 ArrayExpress:Q8WWH5 Bgee:Q8WWH5
CleanEx:HS_TRUB1 Genevestigator:Q8WWH5 GermOnline:ENSG00000165832
TIGRFAMs:TIGR00431 Uniprot:Q8WWH5
Length = 349
Score = 103 (41.3 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 34/113 (30%), Positives = 52/113 (46%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSA---VE 107
W KR + K GH GTLD G L+V I T+++ S S K Y +I +L A ++
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLD 163
Query: 108 NVAKASKKKMMIK------QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMK 154
+ + +++K K +G+L K P Y A L+ + T MK
Sbjct: 164 STGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPLYSA-LKKDGQRLSTLMK 215
Score = 56 (24.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 142 LEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
+EA P + T +L T + ++C G Y+R+ +G L A ++EL R
Sbjct: 220 VEAKPARPVTVYSISLQKFQPPFFT--LDVECGGGFYIRSLVSDIGKELSSCANVLELTR 277
Query: 202 NRSG-IQSEEDGL 213
+ G EE L
Sbjct: 278 TKQGPFTLEEHAL 290
>TIGR_CMR|CJE_1245 [details] [associations]
symbol:CJE_1245 "tRNA pseudouridine synthase B"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
RefSeq:YP_179233.1 ProteinModelPortal:Q5HU02 STRING:Q5HU02
GeneID:3231752 KEGG:cjr:CJE1245 PATRIC:20044286 OMA:KKSFRNE
ProtClustDB:PRK04099 BioCyc:CJEJ195099:GJC0-1271-MONOMER
Uniprot:Q5HU02
Length = 272
Score = 96 (38.9 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 39 KPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEY 96
KP SS+ ++ +K+ + +K G+SGTLDP G LIV + T+L + + K Y
Sbjct: 9 KPKGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGVLIVAFGQYTKLFRFLKKTPKTY 66
Score = 60 (26.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 134 TPASYLAELEAAPNKKPTYMK---SNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
T A LA+ N KP M+ ++S + I + G Y+R+YC L
Sbjct: 124 TRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLN--IEITVSEGAYIRSYCELFARKL 181
Query: 191 GVGAQMIELRRNRSG 205
G+ A + L R + G
Sbjct: 182 GINATLSSLERIKEG 196
>MGI|MGI:1919383 [details] [associations]
symbol:Trub1 "TruB pseudouridine (psi) synthase homolog 1
(E. coli)" species:10090 "Mus musculus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 MGI:MGI:1919383
GO:GO:0003723 GO:GO:0008033 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
GeneTree:ENSGT00530000063611 CTD:142940 HOGENOM:HOG000063679
HOVERGEN:HBG094094 OMA:PFFTLDV OrthoDB:EOG4S4PGQ TIGRFAMs:TIGR00431
EMBL:AK018525 EMBL:AK031674 EMBL:AK169221 EMBL:BC089592
IPI:IPI00135295 IPI:IPI00223749 RefSeq:NP_082391.1
RefSeq:NP_084115.2 UniGene:Mm.258404 HSSP:P60340
ProteinModelPortal:Q8C0D0 SMR:Q8C0D0 STRING:Q8C0D0
PhosphoSite:Q8C0D0 PaxDb:Q8C0D0 PRIDE:Q8C0D0
Ensembl:ENSMUST00000026072 Ensembl:ENSMUST00000026073 GeneID:72133
KEGG:mmu:72133 UCSC:uc008iae.2 UCSC:uc008iag.2 InParanoid:Q8C0D0
NextBio:335520 Bgee:Q8C0D0 Genevestigator:Q8C0D0
GermOnline:ENSMUSG00000025086 Uniprot:Q8C0D0
Length = 338
Score = 118 (46.6 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 37/117 (31%), Positives = 55/117 (47%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSA---VE 107
W KR + K GH GTLD G L+V I R T+++ S S K YI+I +L A ++
Sbjct: 92 WNKRQKQTLKVGHGGTLDSAAQGVLVVGIGRGTKMLTSMLSGSKRYITIGELGKATDTLD 151
Query: 108 NVAKASKKKMMIK------QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLI 158
+ K +++K K +G+L K P Y A L+ + T MK +
Sbjct: 152 STGKVTEEKPYDKITREDIEGILQKFTGNIMQVPPLYSA-LKKDGQRLSTLMKKGKV 207
>ZFIN|ZDB-GENE-080723-73 [details] [associations]
symbol:trub1 "TruB pseudouridine (psi) synthase
homolog 1 (E. coli)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 ZFIN:ZDB-GENE-080723-73
GO:GO:0003723 GO:GO:0006396 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
GeneTree:ENSGT00530000063611 CTD:142940 HOGENOM:HOG000063679
HOVERGEN:HBG094094 OMA:PFFTLDV OrthoDB:EOG4S4PGQ TIGRFAMs:TIGR00431
EMBL:CU464184 EMBL:BC162751 EMBL:BC163177 EMBL:BC163184
IPI:IPI00488585 RefSeq:NP_001122159.1 UniGene:Dr.76382
STRING:B3DHG0 Ensembl:ENSDART00000075889 GeneID:556642
KEGG:dre:556642 NextBio:20881584 Uniprot:B3DHG0
Length = 290
Score = 87 (35.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 60 KTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENV 109
K GH GTLD SG L+V I T+++ + + K+Y + +L A + +
Sbjct: 62 KIGHGGTLDSNASGVLVVGIGEGTKMLTTMLAGSKKYTAFGELGKATDTL 111
Score = 66 (28.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
E+EA P + T NL D + I ++C G YVR+ +G L A + EL
Sbjct: 168 EVEAKPARPVTVY--NLSLEDFSPPLFTIDVECGGGFYVRSLIDDLGKALSSCAHIKELT 225
Query: 201 RNRSG-IQSEEDGL 213
R + G EE L
Sbjct: 226 RTKQGQFTLEEHAL 239
>UNIPROTKB|E1BRM1 [details] [associations]
symbol:TRUB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
PANTHER:PTHR13767 GeneTree:ENSGT00530000063611 OMA:PFFTLDV
TIGRFAMs:TIGR00431 EMBL:AADN02030933 IPI:IPI00591557
Ensembl:ENSGALT00000014801 Uniprot:E1BRM1
Length = 296
Score = 95 (38.5 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 53 KRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKA 112
KR + K GH GTLD +G L+V I + T+L+K+ + K+Y +I L A + +
Sbjct: 54 KRKRQALKIGHGGTLDSAATGVLVVGIGKGTKLLKTILAGSKKYTAIGLLGRATDTLDAT 113
Query: 113 SK 114
K
Sbjct: 114 GK 115
Score = 52 (23.4 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG-IQSEEDGL 213
++C G YVR+ +G L A + EL R + G EE L
Sbjct: 195 VECGGGFYVRSLVSDIGKELSTCASIQELTRTKHGPFTLEEHAL 238
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 232 232 0.00085 113 3 11 22 0.41 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 49
No. of states in DFA: 612 (65 KB)
Total size of DFA: 191 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 21.44u 0.08s 21.52t Elapsed: 00:00:31
Total cpu time: 21.44u 0.08s 21.52t Elapsed: 00:00:32
Start: Thu Aug 15 14:39:19 2013 End: Thu Aug 15 14:39:51 2013