RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11761
(198 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 33.9 bits (78), Expect = 0.003
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 86 NLNTHQLIHSGIRPFKCTTCDKSFVN 111
NL H H+G +P+KC C KSF +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 35.1 bits (80), Expect = 0.019
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 56 QSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQI 113
+ + PRP C C SF+ ++L H H+G +P +C+ CDKSF +
Sbjct: 18 STPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPL 77
Query: 114 NPTSTHTPTYTKSN 127
+ + +
Sbjct: 78 ELSRHLRTHHNNPS 91
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 31.2 bits (70), Expect = 0.29
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 25/101 (24%)
Query: 67 MKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT 124
+PYKC C K + N L H L N P+
Sbjct: 345 KDGKPYKCPVEGCNKKYKNQNGLKYHML-----------------HGHQNQKLHENPSPE 387
Query: 125 KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKH 165
K N+ S KPY+C+ C + + + L H H H
Sbjct: 388 KMNIF------SAKDKPYRCEVCDKRYKNLNGLKYHRKHSH 422
Score = 27.8 bits (61), Expect = 4.5
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 44 HKCE-YCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH 90
H + ++ + S N K +PY+C+ C+K + N L H
Sbjct: 370 HMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH 417
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 27.3 bits (61), Expect = 0.51
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 73 KCDTCEKSFTNSQNLNTHQLIH 94
KC C KSF+ NL H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 23.8 bits (52), Expect = 8.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 45 KCEYCHKVFDQQSSLLSH 62
KC C K F ++S+L H
Sbjct: 1 KCPDCGKSFSRKSNLKRH 18
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 27.0 bits (60), Expect = 0.67
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIH 94
Y+C C K F + L H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|177288 PHA00616, PHA00616, hypothetical protein.
Length = 44
Score = 27.4 bits (61), Expect = 0.70
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 142 YQCDRCSQFFGDRMNLISHHCHKHKQSCL 170
YQC RC F + +I H HKQ+ L
Sbjct: 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKL 30
>gnl|CDD|226454 COG3945, COG3945, Uncharacterized conserved protein [Function
unknown].
Length = 189
Score = 28.2 bits (63), Expect = 2.0
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 156 NLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFSGRVVDTPN 197
NLI H K PF ++ ++V R +
Sbjct: 127 NLIKRHIDKEDNVLFPFAESTLS-EELNEVNSECFRFDEETF 167
>gnl|CDD|149348 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2). This domain is found in
Saccharomyces cerevisiae protein SMP2, proteins with an
N-terminal lipin domain (Pfam: PF04571) and
phosphatidylinositol transfer proteins. SMP2 (also known
as PAH1) is involved in plasmid maintenance and
respiration, and has been identified as a Mg2+-dependent
phosphatidate phosphatase (EC:3.1.3.4) that contains a
haloacid dehalogenase (HAD)-like domain. Lipin proteins
are involved in adipose tissue development and insulin
resistance.
Length = 156
Score = 27.7 bits (62), Expect = 3.0
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 124 TKSNLAQHSCMNSHFPK-PYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFG 178
T++ L+QH + P P F +I K +CL I +LF
Sbjct: 60 TRAYLSQHKQDGYNLPHGPVILSPDRLFAALHREVILKKPLVFKIACLRDIRQLFP 115
>gnl|CDD|185131 PRK15209, PRK15209, long polar fimbrial protein LpfA; Provisional.
Length = 174
Score = 27.6 bits (61), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 176 LFGFDDGDKVAKFSGRVVDTP 196
+F + GD KF+G +VD P
Sbjct: 18 VFAAESGDGTVKFTGEIVDAP 38
>gnl|CDD|224907 COG1996, RPC10, DNA-directed RNA polymerase, subunit RPC10
(contains C4-type Zn-finger) [Transcription].
Length = 49
Score = 25.8 bits (57), Expect = 3.7
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 14/47 (29%)
Query: 26 YKCHQCQRLIFLSANAGVHKCEYC-HKVFDQQSSLLSHNCPQMKPRP 71
YKC +C R + L +C YC ++ +K RP
Sbjct: 7 YKCARCGREVELDQETRGIRCPYCGSRIL-------------VKERP 40
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 24.5 bits (54), Expect = 5.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 72 YKCDTCEKSFTNSQNLNTH 90
+ C C K+F++ Q L H
Sbjct: 2 HTCGVCGKTFSSLQALGGH 20
>gnl|CDD|222714 pfam14369, zf-RING_3, zinc-finger.
Length = 34
Score = 24.4 bits (54), Expect = 6.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 26 YKCHQCQRLIFLSANAGVHKCEYCH 50
Y C+QC R + ++ + C C
Sbjct: 3 YWCYQCDRFVRIAPSGDSDVCPRCG 27
>gnl|CDD|225899 COG3364, COG3364, Zn-ribbon containing protein [General function
prediction only].
Length = 112
Score = 26.0 bits (57), Expect = 7.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQ 66
H+C C +VFD S + CP+
Sbjct: 3 HQCTRCGEVFDDGSEEILSGCPK 25
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.134 0.446
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,047,897
Number of extensions: 725370
Number of successful extensions: 967
Number of sequences better than 10.0: 1
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 61
Length of query: 198
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 106
Effective length of database: 6,857,034
Effective search space: 726845604
Effective search space used: 726845604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)