RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11761
(198 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 45.0 bits (107), Expect = 7e-08
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 70 RPYKCDTCEKSFTNSQNLNTH-QLIHSGIRPFKC 102
+PY C +C K F+ +LN H + +H+ RP KC
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 28.4 bits (64), Expect = 0.067
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 13/51 (25%)
Query: 95 SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD 145
S +P+ C +C K F +L H +P++C
Sbjct: 1 SVGKPYICQSCGKGF-------------SRPDHLNGHIKQVHTSERPHKCQ 38
Score = 27.3 bits (61), Expect = 0.14
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 140 KPYQCDRCSQFFGDRMNLISHHCHKH 165
KPY C C + F +L H H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVH 29
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 42.0 bits (98), Expect = 1e-06
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+ C+ C K F +S H + RPY C C K F +L H IH
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 36.2 bits (83), Expect = 1e-04
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
+ Y C C KSFT+ + H +H G+RP+ C C K F
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF 40
Score = 23.1 bits (49), Expect = 6.9
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNL 157
+ + C C KSF KS +H M+ +PY C C + F + +L
Sbjct: 2 KLYPCQ-CGKSF-------------THKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHL 46
Query: 158 ISH 160
+ H
Sbjct: 47 VGH 49
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 41.1 bits (97), Expect = 1e-06
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY C C K+F+ S L HQ +H+G
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 30.7 bits (70), Expect = 0.010
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 13/39 (33%)
Query: 93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
IHSG +P+ C C K+F S L QH
Sbjct: 1 IHSGEKPYGCVECGKAF-------------SRSSILVQH 26
Score = 26.0 bits (58), Expect = 0.39
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 140 KPYQCDRCSQFFGDRMNLISHH 161
KPY C C + F L+ H
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQ 27
Score = 24.5 bits (54), Expect = 1.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
+ C C K F + S L+ H
Sbjct: 8 YGCVECGKAFSRSSILVQH 26
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 39.9 bits (94), Expect = 4e-06
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+P++C C ++F+ S +L TH H+G
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 25.3 bits (56), Expect = 0.64
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHH 161
KP+QC C + F +L +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
Score = 24.5 bits (54), Expect = 1.5
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
+C C + F + L +H
Sbjct: 4 FQCRICMRNFSRSDHLTTH 22
Score = 22.6 bits (49), Expect = 7.2
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 98 RPFKCTTCDKSF 109
+PF+C C ++F
Sbjct: 2 KPFQCRICMRNF 13
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 39.9 bits (94), Expect = 5e-06
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
R + C+ C ++F ++L H H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 24.5 bits (54), Expect = 1.1
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
CE C + F +Q L H
Sbjct: 3 FVCEVCTRAFARQEHLKRH 21
Score = 24.5 bits (54), Expect = 1.2
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHH 161
+ + C+ C++ F + +L H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 23.0 bits (50), Expect = 4.3
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 98 RPFKCTTCDKSF 109
R F C C ++F
Sbjct: 1 RSFVCEVCTRAF 12
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 38.5 bits (90), Expect = 2e-05
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 72 YKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKC 102
+ C C KSF ++L H +HS R + C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 26.6 bits (59), Expect = 0.30
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCD 75
C K F+ + L H R Y C+
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 37.3 bits (87), Expect = 4e-05
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY C C+K+F Q L+ H +
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 28.1 bits (63), Expect = 0.068
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 13/39 (33%)
Query: 93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
H+G +P+ C+ CDK+F K L H
Sbjct: 2 THTGEKPYACSHCDKTF-------------RQKQLLDMH 27
Score = 24.6 bits (54), Expect = 1.6
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 140 KPYQCDRCSQFFGDRMNLISHH 161
KPY C C + F + L H
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHF 28
Score = 23.5 bits (51), Expect = 3.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
+ C +C K F Q+ L H
Sbjct: 9 YACSHCDKTFRQKQLLDMH 27
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 36.6 bits (85), Expect = 6e-05
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+ + C C K F S +L+ H H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQN 27
Score = 25.0 bits (55), Expect = 0.77
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 140 KPYQCDRCSQFFGDRMNLISHH 161
K + C C + F +L H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
Score = 23.1 bits (50), Expect = 4.6
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
C C K F + L H
Sbjct: 3 FACPECPKRFMRSDHLSKH 21
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 36.0 bits (84), Expect = 8e-05
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS 95
+PYKC C K+F+ + L HQ IH+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 25.2 bits (56), Expect = 0.62
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHH 161
KPY+C C + F LI+H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQ 22
Score = 22.9 bits (50), Expect = 4.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
+KC C K F Q S L++H
Sbjct: 3 YKCLECGKAFSQNSGLINH 21
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 36.2 bits (84), Expect = 1e-04
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
+P+KC C KS++ +NL TH H+G
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 35.9 bits (83), Expect = 1e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
RP+ C C +FT N H +H+
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 26.3 bits (58), Expect = 0.41
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 94 HSGIRPFKCTTCDKSFVNQINPTS---THTPTYT 124
SG RPF C C +F + N HT T +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS 35
Score = 23.9 bits (52), Expect = 2.4
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 140 KPYQCDRCSQFFGDRMNLISHH 161
+P+ C C F + N H
Sbjct: 6 RPFVCRICLSAFTTKANCARHL 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 35.8 bits (83), Expect = 1e-04
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
RPY C +C++ F+ S +L H IH+G
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 35.4 bits (82), Expect = 2e-04
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 70 RPYKCDT--CEKSFTNSQNLNTHQLIHSG 96
RP+ C C K FT S L H+ H+G
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 35.4 bits (82), Expect = 2e-04
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
RPY CD C+K+F + +L H+ H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 35.0 bits (81), Expect = 2e-04
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY+C C FT S + H L
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHT 33
Score = 30.3 bits (69), Expect = 0.014
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 13/39 (33%)
Query: 93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
HSG +P++C C F + H
Sbjct: 2 THSGEKPYECYICHARF-------------TQSGTMKMH 27
Score = 28.4 bits (64), Expect = 0.062
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 140 KPYQCDRCSQFFGDRMNLISHHCHKH 165
KPY+C C F + H KH
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKH 32
Score = 24.9 bits (55), Expect = 1.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
++C CH F Q ++ H
Sbjct: 9 YECYICHARFTQSGTMKMH 27
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 34.7 bits (80), Expect = 3e-04
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
+P++C C++SF+ S +L H+ H +
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 28.5 bits (64), Expect = 0.058
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 13/42 (30%)
Query: 90 HQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+GI+PF+C CD+SF +LA H
Sbjct: 2 STRGSTGIKPFQCPDCDRSF-------------SRSDHLALH 30
Score = 22.8 bits (49), Expect = 5.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHH 161
KP+QC C + F +L H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHR 31
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 34.8 bits (80), Expect = 3e-04
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
R YKCD C KSF++S +L+ H+ H+G
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 27.8 bits (62), Expect = 0.12
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 13/42 (30%)
Query: 90 HQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ R +KC C KSF S+L++H
Sbjct: 3 SEWQQRERRRYKCDECGKSF-------------SHSSDLSKH 31
Score = 23.6 bits (51), Expect = 3.4
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHH 161
+ Y+CD C + F +L H
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHR 32
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 33.5 bits (77), Expect = 8e-04
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
+P++C C K F+ NL TH IH+G
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 32.3 bits (74), Expect = 0.002
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHS 95
RPY C C K F S NL +H L H+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 31.2 bits (71), Expect = 0.006
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
PR Y C C++ F ++Q L H +H R
Sbjct: 3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 32
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 30.4 bits (68), Expect = 0.010
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
+ C+ C K F + +LN H+L HSG +P+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 28.8 bits (64), Expect = 0.044
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
R + C C K+F S L HQL+H+G
Sbjct: 1 RVHVCAECGKAFVESSKLKRHQLVHTG 27
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 28.7 bits (64), Expect = 0.052
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 58 SLLSHNCPQMKPRPYKCDTCE--KSFTNSQNLNTHQLIHSGIR 98
+ +M + ++C K+F N+ +H H R
Sbjct: 5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.4 bits (60), Expect = 0.12
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS 95
+PYKC TC+ + +S +LN H IHS
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 27.0 bits (59), Expect = 0.19
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIH 94
YKC CE+SF L+ HQ +H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 26.6 bits (58), Expect = 0.23
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
KP P K + CEK FT+ +L H L H+G
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG 29
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 26.6 bits (58), Expect = 0.23
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSG 96
P+KC+ C K F+ L TH H+G
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.9 bits (57), Expect = 0.41
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIH 94
+P+ CD C + F S H IH
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIH 26
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 26.6 bits (59), Expect = 0.52
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 42 GVHKCEYCHKVFDQQSSLLSH--------NCPQMKPRPY 72
G+H+C C + F ++L +H Q+ PY
Sbjct: 14 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPY 52
Score = 23.9 bits (52), Expect = 4.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 72 YKCDTCEKSFTNSQNLNTHQ 91
++C C + F +S NL TH
Sbjct: 16 HRCLACARYFIDSTNLKTHF 35
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 73
Score = 25.8 bits (57), Expect = 1.3
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 26 YKCHQCQRLIFLSANAGVHKCEYCHKVF 53
+ C C G+ +C YC F
Sbjct: 28 HACPNCGEDRVDRQGTGIWQCSYCDYKF 55
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 26.2 bits (57), Expect = 1.4
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 23 DNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYK-CDTCEK 79
D +C C + + +A V CE C K + +P P C C +
Sbjct: 46 DGVNRCILCGEQLGMLGSASVV-CEDCKKNVCTK---CGVETSNNRPHPVWLCKICLE 99
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.2 bits (52), Expect = 2.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
RP+KC C + NS L H H+G
Sbjct: 2 RPFKCQICPYASRNSSQLTVHLRSHTG 28
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO
{Nitrosomonas europaea [TaxId: 915]}
Length = 499
Score = 26.5 bits (57), Expect = 2.2
Identities = 12/150 (8%), Positives = 29/150 (19%), Gaps = 9/150 (6%)
Query: 20 HGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEK 79
H N + + + ++ + + + C C
Sbjct: 99 HANLDKIRNLKSDDPLYYKKGKLEEVENNLRSM--------GKLGEKETLKEVGCIDCHV 150
Query: 80 SFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP 139
+ + I C TC + A +
Sbjct: 151 DVNKKDKADHTKDIRM-PTADTCGTCHLREFAERESERDTMVWPNGQWPAGRPSHALDYT 209
Query: 140 KPYQCDRCSQFFGDRMNLISHHCHKHKQSC 169
+ + + CH ++ C
Sbjct: 210 ANIETTVWATMPQREVAEGCTMCHTNQNKC 239
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 24.6 bits (53), Expect = 2.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIH 94
C C K FT++ L H+ H
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQH 29
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 73
Score = 24.6 bits (54), Expect = 2.9
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 26 YKCHQCQRLIFLSANAGVHKCEYCHKVF 53
+KC C A G+ C +C
Sbjct: 28 HKCPVCGFKKLKRAGTGIWMCGHCGYKI 55
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 26.0 bits (56), Expect = 3.0
Identities = 15/162 (9%), Positives = 39/162 (24%)
Query: 16 LLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCD 75
+ I G + A K ++ G+ + + Q + +
Sbjct: 4 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEV 63
Query: 76 TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN 135
+K+ QL+ + I+P T + + + +
Sbjct: 64 ITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLR 123
Query: 136 SHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF 177
++ D + + + + S F
Sbjct: 124 DAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDF 165
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 23.7 bits (51), Expect = 3.3
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 70 RPYKCDT--CEKSFTNSQNLNTHQLIH 94
+P+ C C + FTN +L H+ H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.0 bits (52), Expect = 4.7
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
+KC C +FT +L +QL F+CT C
Sbjct: 15 FKCPVCSSTFT---DLEANQLFDPMTGTFRCTFCH 46
Score = 23.2 bits (50), Expect = 9.2
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 7/40 (17%)
Query: 26 YKCHQCQR-------LIFLSANAGVHKCEYCHKVFDQQSS 58
+KC C G +C +CH ++ S
Sbjct: 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDES 54
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 24.8 bits (53), Expect = 4.8
Identities = 4/55 (7%), Positives = 9/55 (16%)
Query: 137 HFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFSGR 191
P + + + +G + K G
Sbjct: 46 IAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGA 100
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein
19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 24.3 bits (52), Expect = 5.9
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 27 KCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYK-CDTCEKSFTNSQ 85
+C+ C + + C+ C + F S P+ K C C T
Sbjct: 11 RCYGCAVK--FTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS 68
Query: 86 N 86
+
Sbjct: 69 S 69
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 22.8 bits (48), Expect = 6.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQL 92
PYKC +C + F ++L +H +
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMI 23
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 24.4 bits (52), Expect = 6.3
Identities = 9/61 (14%), Positives = 13/61 (21%), Gaps = 2/61 (3%)
Query: 133 CMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF--ISRLFGFDDGDKVAKFSG 190
C P + +F + K + DG V K G
Sbjct: 38 CPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVG 97
Query: 191 R 191
Sbjct: 98 A 98
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.4 bits (47), Expect = 7.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTH 90
+ Y+C CE +S NL TH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTH 21
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 23.1 bits (49), Expect = 9.9
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 22 NDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTC 77
++ C C + S H C C +F + S + P K CD C
Sbjct: 5 DNEVQNCMACGKG--FSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDAC 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.134 0.446
Gapped
Lambda K H
0.267 0.0376 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 738,059
Number of extensions: 33993
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 196
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (24.0 bits)