BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11766
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F3A|A Chain A, Crystal Structure Of Leut Bound To L-Tryptophan And Sodium
Length = 508
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 74/132 (56%), Gaps = 9/132 (6%)
Query: 55 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E A
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 115 VGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSL 166
+G++GG G LW AK +GV + + L+V IYY I S+TL + L
Sbjct: 61 MGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL 119
Query: 167 QFDVPWSKCDPE 178
VP DP+
Sbjct: 120 VGLVPEPPTDPD 131
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To
Sodium And L- Tryptophan
Length = 519
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IYY I S+TL +
Sbjct: 64 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And
L- Tryptophan
Length = 519
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IYY I S+TL +
Sbjct: 64 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And
L- Tryptophan
Length = 519
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IYY I S+TL +
Sbjct: 64 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation
In Complex With Fab
Length = 519
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IYY I S+TL +
Sbjct: 64 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To
4-Fluoro-L-Phenylalanine And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine And
Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-alanine, Sodium, And Clomipramine
Length = 519
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IYY I S+TL +
Sbjct: 64 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IYY I S+TL +
Sbjct: 64 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To
L-Selenomethionine From Lipid Bicelles
Length = 513
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IYY I S+TL +
Sbjct: 64 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
Length = 513
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IYY I S+TL +
Sbjct: 64 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IYY I S+TL +
Sbjct: 64 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 1 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 60
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IYY I S+TL +
Sbjct: 61 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 119
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 120 LVGLVPEPPPNATDPD 135
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 55 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E A
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 115 VGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSL 166
+G++GG G LW AK +GV + + L+V IYY I S+TL + L
Sbjct: 61 MGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL 119
Query: 167 QFDVPW---SKCDPE 178
VP + DP+
Sbjct: 120 VGLVPEPPPNATDPD 134
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 55 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E A
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 115 VGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSL 166
+G++GG G LW AK +GV + + L+V IYY I S+TL + L
Sbjct: 61 MGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL 119
Query: 167 QFDVPW---SKCDPE 178
VP + DP+
Sbjct: 120 VGLVPEPPPNATDPD 134
>pdb|3F3D|A Chain A, Crystal Structure Of Leut Bound To L-Methionine And Sodium
Length = 517
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 55 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E A
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 115 VGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSL 166
+G++GG G LW AK +GV + + L+V IYY I S+TL + L
Sbjct: 61 MGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL 119
Query: 167 QFDVP 171
VP
Sbjct: 120 VGLVP 124
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 519
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
+R W +R +L+ G +VG+GN RFP A +NGGGAF+IPY+I +L G P+ ++E
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
A+G++GG G LW AK +GV + + L+V IY+ I S+TL +
Sbjct: 64 AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYFVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
L VP + DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138
>pdb|3GIX|A Chain A, Crystal Structure Of Human Splicing Factor Dim2
pdb|3GIX|B Chain B, Crystal Structure Of Human Splicing Factor Dim2
Length = 149
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 166 LQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACPP 225
LQ D SK + + M+ Y+ V+ + + + + Y PS + H+K + P
Sbjct: 39 LQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPD 98
Query: 226 HTS--PQSKCDPEWADMSTCYVRG 247
HT K ++ D+ RG
Sbjct: 99 HTKFVGSFKTKQDFIDLIEVIYRG 122
>pdb|1XBS|A Chain A, Crystal Structure Of Human Dim2: A Dim1-Like Protein
Length = 149
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 166 LQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACPP 225
LQ D SK + + M+ Y+ V+ + + + + Y PS + H+K + P
Sbjct: 39 LQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPD 98
Query: 226 HTS--PQSKCDPEWADMSTCYVRG 247
HT K ++ D+ RG
Sbjct: 99 HTKFVGSFKTKQDFIDLIEVIYRG 122
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 88 NGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVG 137
NG FL+ +++++++ PM F+E + + P LW A VG
Sbjct: 14 NGLNRFLMIFVLLVIIIPVPMVFIEPEINNY----PDALWWAIVTATTVG 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,599,785
Number of Sequences: 62578
Number of extensions: 291698
Number of successful extensions: 596
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 18
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)