Query psy11766
Match_columns 248
No_of_seqs 182 out of 1312
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 18:22:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3659|consensus 100.0 8.3E-52 1.8E-56 403.9 10.7 197 50-248 73-273 (629)
2 KOG3660|consensus 100.0 8.4E-50 1.8E-54 396.8 9.2 198 49-248 28-235 (629)
3 PF00209 SNF: Sodium:neurotran 100.0 2.5E-45 5.3E-50 357.1 2.2 190 55-248 1-199 (523)
4 COG0733 Na+-dependent transpor 100.0 4E-34 8.6E-39 273.7 9.4 118 54-171 4-124 (439)
5 TIGR00835 agcS amino acid carr 59.3 25 0.00053 34.7 6.2 61 59-121 47-107 (425)
6 PF01235 Na_Ala_symp: Sodium:a 56.5 41 0.00088 33.1 7.2 59 60-120 20-78 (416)
7 COG4665 FcbT2 TRAP-type mannit 40.5 63 0.0014 28.4 5.1 47 55-120 82-128 (182)
8 PRK10580 proY putative proline 37.8 1.7E+02 0.0038 28.0 8.3 67 59-127 11-78 (457)
9 PRK02251 putative septation in 37.2 67 0.0014 25.1 4.3 46 97-148 37-83 (87)
10 PF06781 UPF0233: Uncharacteri 34.3 65 0.0014 25.1 3.8 46 98-148 37-83 (87)
11 PRK11387 S-methylmethionine tr 25.7 3.6E+02 0.0078 26.0 8.2 66 60-127 17-84 (471)
12 PRK00159 putative septation in 25.5 1.4E+02 0.003 23.3 4.3 46 98-148 37-83 (87)
13 TIGR00912 2A0309 spore germina 23.8 4.4E+02 0.0096 24.1 8.2 40 60-100 4-43 (359)
14 PRK13629 threonine/serine tran 23.8 1.4E+02 0.0031 29.6 5.1 31 58-89 17-48 (443)
15 PF11143 DUF2919: Protein of u 22.8 2.4E+02 0.0052 23.8 5.7 66 98-166 56-138 (149)
16 COG0531 PotE Amino acid transp 22.5 4.7E+02 0.01 24.4 8.2 64 62-128 18-82 (466)
17 COG1115 AlsT Na+/alanine sympo 20.9 3.1E+02 0.0067 27.5 6.7 67 60-128 64-131 (452)
No 1
>KOG3659|consensus
Probab=100.00 E-value=8.3e-52 Score=403.90 Aligned_cols=197 Identities=36% Similarity=0.761 Sum_probs=174.1
Q ss_pred cccccCCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCCCChhhhhh-
Q psy11766 50 AAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWN- 128 (248)
Q Consensus 50 ~~~~~R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~~g~i~~~~- 128 (248)
++.++|++|++|+||+||++|+||+|||+|||||+|++||||+|++||++++++.|+||++||+++|||+|+|++++|+
T Consensus 73 ~e~e~R~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~r 152 (629)
T KOG3659|consen 73 EELEQRPTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRR 152 (629)
T ss_pred hhhccCCcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHH
Confidence 3445699999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred hccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccccccccc---cccccccceeec
Q psy11766 129 CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVS---MSHVESARVCYS 205 (248)
Q Consensus 129 ~~p~~kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LPW~~C~n~WNt~~~C~~~~~~~s---~~~~~s~~~~y~ 205 (248)
++|+++|||++++++++++.+||++|++|++||++.||++++||++|+|+||++ +|++...-.+ ..+.+++.++||
T Consensus 153 i~P~l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s~n~~-~C~~~~~s~~~~~~~ek~s~a~ef~ 231 (629)
T KOG3659|consen 153 IAPALKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNSWNGP-NCFDPTWSKNCDEECEKTSPAQEFW 231 (629)
T ss_pred hCHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCcccCC-CccCccccccCchhhhccchhHHHH
Confidence 669999999999999999999999999999999999999999999999999999 9998653211 124577899999
Q ss_pred ccccccccccceecccCCCCCCCcccccCchhhhhhceeeccC
Q psy11766 206 PSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV 248 (248)
Q Consensus 206 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (248)
.+.+.++-=+|- -.-.=|+.++++.-+..-|++.+++.|||+
T Consensus 232 ~r~~l~l~~~~~-~~d~g~~~~~~~lc~~lv~~liyf~~~kG~ 273 (629)
T KOG3659|consen 232 YRKVLGLSESHG-LDDLGGPSWTLALCLVLVWLLIYFSLWKGV 273 (629)
T ss_pred Hhhccccccccc-ccccCCCchHHHHHHHHHHHHHHHHHhccc
Confidence 888766544331 122235788988888999999999999996
No 2
>KOG3660|consensus
Probab=100.00 E-value=8.4e-50 Score=396.78 Aligned_cols=198 Identities=43% Similarity=0.851 Sum_probs=166.0
Q ss_pred ccccccCCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCCCChhhhhh
Q psy11766 49 LAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWN 128 (248)
Q Consensus 49 ~~~~~~R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~~g~i~~~~ 128 (248)
++++++|++|+||+||+|+|+|++|||||||||||+|++||||||||||+++++++|+|+++||+++|||+++|++.+||
T Consensus 28 ~~~~~~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wr 107 (629)
T KOG3660|consen 28 SDAEPDRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWR 107 (629)
T ss_pred cccccccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccccccc---------cccc
Q psy11766 129 -CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSM---------SHVE 198 (248)
Q Consensus 129 -~~p~~kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LPW~~C~n~WNt~~~C~~~~~~~s~---------~~~~ 198 (248)
.+|++||+|++++++++++++||+++++|+++|+++||+.+|||++|+|+|||+ +|.+.....+- .+..
T Consensus 108 ri~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~-~c~~~~~~~~~~~~~~~~~~~~~~ 186 (629)
T KOG3660|consen 108 RICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTE-YCLDGTSKQNCANLTKLSNALNFN 186 (629)
T ss_pred HhChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCC-ccccccccccccccccccchhhhc
Confidence 679999999999999999999999999999999999999999999999999988 99875422111 1223
Q ss_pred ccceeecccccccccccceecccCCCCCCCcccccCchhhhhhceeeccC
Q psy11766 199 SARVCYSPSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV 248 (248)
Q Consensus 199 s~~~~y~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (248)
+...+++++++.++-..+--..+| +..|..+--+...|++.++|++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~w~L~~~l~~~Wliv~~~i~KGv 235 (629)
T KOG3660|consen 187 SPVAEFWENRVLSLSDGSGIEDFG-SINWPLALCLALAWLIVFFCIWKGV 235 (629)
T ss_pred cchhhhhhhhhcccccccccccCC-CCChHHHHHHHHHHHHHHHHHhhcc
Confidence 344455555544432211001122 1367777779999999999999997
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=100.00 E-value=2.5e-45 Score=357.06 Aligned_cols=190 Identities=39% Similarity=0.846 Sum_probs=117.0
Q ss_pred CCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCCCChhhhh-hhcccc
Q psy11766 55 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPIA 133 (248)
Q Consensus 55 R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~~g~i~~~-~~~p~~ 133 (248)
|++|+||++|+++++|++||+||+|||||+|++||||+|++||+++++++|+|++++|+++||++|+|++++| +.+|++
T Consensus 1 R~~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~ 80 (523)
T PF00209_consen 1 REKWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIF 80 (523)
T ss_dssp ----S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHH
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999 556999
Q ss_pred ccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccccccc--------cccccccccceeec
Q psy11766 134 KGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVN--------VSMSHVESARVCYS 205 (248)
Q Consensus 134 kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LPW~~C~n~WNt~~~C~~~~~~--------~s~~~~~s~~~~y~ 205 (248)
||+|++++++++++++||+++++|+++|+++|+++++||++|+|+||++ +|.+...+ .+.++.+++.+||+
T Consensus 81 ~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~n~~-~c~~~~~~~~~~~~~~~~~~~~~~~~~~ff 159 (523)
T PF00209_consen 81 KGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSWNTP-NCYDIYSNCNCSNSSSYNFTQRISPAEEFF 159 (523)
T ss_dssp HTHHHH---HHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999 99874432 22234578899999
Q ss_pred ccccccccccceecccCCCCCCCcccccCchhhhhhceeeccC
Q psy11766 206 PSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV 248 (248)
Q Consensus 206 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (248)
.++|.+..- .+ .+.| +..++...-+...|++.+.|..||+
T Consensus 160 ~~~vl~~s~-~i-~~~g-~~~~~l~~~l~~~w~iv~~~i~kGi 199 (523)
T PF00209_consen 160 YREVLQISD-GI-SDFG-SLSWQLLLCLFIVWLIVFFGIWKGI 199 (523)
T ss_dssp ------------------------HHHHHHHHHHHTTTTTTTH
T ss_pred ccccccccc-cc-cccc-chhHHHHHHHHHHHHHHHHheEecc
Confidence 999887441 11 1122 2355555557889999999999995
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=100.00 E-value=4e-34 Score=273.66 Aligned_cols=118 Identities=40% Similarity=0.777 Sum_probs=115.5
Q ss_pred cCCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCCCChhhhhhhc---
Q psy11766 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCC--- 130 (248)
Q Consensus 54 ~R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~~g~i~~~~~~--- 130 (248)
+|++|+||.+||||++|+||||||+|||||+.++||||||++||+++++++|+|++++|+++||++|++++++++++
T Consensus 4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~ 83 (439)
T COG0733 4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPK 83 (439)
T ss_pred cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCC
Q psy11766 131 PIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVP 171 (248)
Q Consensus 131 p~~kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LP 171 (248)
+.|+++|+..+++++++++||++|++|++.|++.|+++.+|
T Consensus 84 ~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~ 124 (439)
T COG0733 84 KKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP 124 (439)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 67999999999999999999999999999999999999887
No 5
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=59.32 E-value=25 Score=34.66 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=51.3
Q ss_pred CchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCCC
Q psy11766 59 GSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGV 121 (248)
Q Consensus 59 ~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~~ 121 (248)
-|.++-+.+.++..||.|||--.|.- .+.|| .=-+-++-...++|...-+.|..++|+.|+
T Consensus 47 iS~fqA~~~ala~~VG~GnI~Gva~A-i~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~ 107 (425)
T TIGR00835 47 VSSFQALFTSLAARVGIGNIVGVATA-IAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRE 107 (425)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHH-HHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 37799999999999999999999998 45554 445557788889999999999999997773
No 6
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=56.50 E-value=41 Score=33.10 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=48.5
Q ss_pred chHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCC
Q psy11766 60 SRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGG 120 (248)
Q Consensus 60 sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~ 120 (248)
|.++-+.++++..||.|||--=..=.. =||.=-+-++-..-++|.+.-+.|..|||+.|
T Consensus 20 S~fqA~~~ala~~vG~GNI~GVa~AI~--~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR 78 (416)
T PF01235_consen 20 SPFQALCTALAGTVGTGNIAGVATAIA--IGGPGAIFWMWISALLGMATKYAEVTLAQKYR 78 (416)
T ss_pred ChHHHHHHHHHhccCcchHHHHHHHHH--hhchhHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 779999999999999999975544333 25566677888889999999999999999766
No 7
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.46 E-value=63 Score=28.39 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=36.8
Q ss_pred CCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCC
Q psy11766 55 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGG 120 (248)
Q Consensus 55 R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~ 120 (248)
-+.++.|.+-.+=.+|. .-||+|+++.++..+.|...+-..+|..+.
T Consensus 82 Y~~ls~R~qa~vDllGt-------------------ifFLlPfc~l~iy~~~~~~~~S~~~GE~S~ 128 (182)
T COG4665 82 YGSLSRRTQAWVDLLGT-------------------IFFLLPFCLLVIYLSWPYVALSWAIGETSN 128 (182)
T ss_pred ccccCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHccHHHHHHHHhcccCC
Confidence 35566666665555554 239999999999999999999999998766
No 8
>PRK10580 proY putative proline-specific permease; Provisional
Probab=37.75 E-value=1.7e+02 Score=28.03 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=44.9
Q ss_pred CchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHH-hhhhhHHHHHHhhhcCCCChhhhh
Q psy11766 59 GSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVL-AGKPMYFLELAVGQFGGVGPLGLW 127 (248)
Q Consensus 59 ~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l-~GiPll~lE~~lGQ~~~~g~i~~~ 127 (248)
-+..+.++-.+|..+|-|=+. -|....+.+|..-++.|++..++ +.+.+.+.|++- ++-..|..-.|
T Consensus 11 L~~~~~~~i~vg~~IG~Gif~-~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s-~~P~~Gg~y~y 78 (457)
T PRK10580 11 LSTRHIRFMALGSAIGTGLFY-GSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSV-HNPAASSFSRY 78 (457)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCHHHH
Confidence 366788899999999988544 45555666665557777766655 666777788865 34445544444
No 9
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=37.24 E-value=67 Score=25.09 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhhHHHHHHh-hhcCCCChhhhhhhccccccchhhHHHHHHHHH
Q psy11766 97 YLIMLVLAGKPMYFLELAV-GQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVC 148 (248)
Q Consensus 97 Y~i~l~l~GiPll~lE~~l-GQ~~~~g~i~~~~~~p~~kGIG~~~ili~fli~ 148 (248)
-++.++++|+--++.-..- ||+- ...++.|+.+ ||++.+++.|++.
T Consensus 37 ~m~~lm~~Gl~WlvvyYl~~~~~P-~~~lG~WN~~-----IGfg~~~~G~~mt 83 (87)
T PRK02251 37 LFVALMIIGLIWLVVYYLSNGSLP-IPALGAWNLV-----IGFGLIMAGFGMT 83 (87)
T ss_pred HHHHHHHHHHHHHHHHhhhCCCcC-cccccchhHH-----HHHHHHHHHHHHH
Confidence 3344444444433333322 4444 5566778765 7887777777654
No 10
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=34.33 E-value=65 Score=25.08 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=24.7
Q ss_pred HHHHHHhhhhhHHHHHHhhhc-CCCChhhhhhhccccccchhhHHHHHHHHH
Q psy11766 98 LIMLVLAGKPMYFLELAVGQF-GGVGPLGLWNCCPIAKGVGVAMVTVSLIVC 148 (248)
Q Consensus 98 ~i~l~l~GiPll~lE~~lGQ~-~~~g~i~~~~~~p~~kGIG~~~ili~fli~ 148 (248)
++.++++|+--++.-..-++. .-...++.|+.+ ||+..+++.|++.
T Consensus 37 m~~lmllGL~WiVvyYi~~~~i~pi~~lG~WN~~-----IGfg~~~~Gf~mt 83 (87)
T PF06781_consen 37 MLGLMLLGLLWIVVYYISGGQIPPIPDLGNWNLA-----IGFGLMIVGFLMT 83 (87)
T ss_pred HHHHHHHHHHHHhhhhcccCCCCCcccccchHHH-----HHHHHHHHHHHHH
Confidence 334444444433333333332 344556777765 7777777777654
No 11
>PRK11387 S-methylmethionine transporter; Provisional
Probab=25.68 E-value=3.6e+02 Score=26.01 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=44.1
Q ss_pred chHHHHHHHHHhhhcCCceeecchhhhhcCCe-eehHHHHHHHH-HhhhhhHHHHHHhhhcCCCChhhhh
Q psy11766 60 SRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-AFLIPYLIMLV-LAGKPMYFLELAVGQFGGVGPLGLW 127 (248)
Q Consensus 60 sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGg-aFlIpY~i~l~-l~GiPll~lE~~lGQ~~~~g~i~~~ 127 (248)
+..+.++-.+|..+|-| +.--|......+|. .-++.|++.-+ ...+++-+.|++- .+-+.|..-.|
T Consensus 17 ~~~~~~~l~ig~~IG~G-if~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas-~~P~aGG~y~y 84 (471)
T PRK11387 17 KVRHLVMLSLGGVIGTG-LFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSV-AMPETGAFHVY 84 (471)
T ss_pred cHHHHHHHHHHhhhhhH-HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCHHHH
Confidence 56778888999999999 55556666667664 34666766544 4556777888876 34444544444
No 12
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=25.48 E-value=1.4e+02 Score=23.33 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=23.5
Q ss_pred HHHHHHhhhhhHHHHHHh-hhcCCCChhhhhhhccccccchhhHHHHHHHHH
Q psy11766 98 LIMLVLAGKPMYFLELAV-GQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVC 148 (248)
Q Consensus 98 ~i~l~l~GiPll~lE~~l-GQ~~~~g~i~~~~~~p~~kGIG~~~ili~fli~ 148 (248)
++.++++|+--++.-..- |++--...++.|+.+ ||++.+++.|++.
T Consensus 37 m~glm~~GllWlvvyYl~~~~~P~m~~lG~WN~~-----IGFg~~i~G~lmt 83 (87)
T PRK00159 37 MLGLMLIGLAWLVVNYLAGPAIPWMADLGPWNYA-----IGFALMITGLLMT 83 (87)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcccCchhHH-----HHHHHHHHHHHHh
Confidence 334444444333332222 333334456677764 7777777776653
No 13
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=23.81 E-value=4.4e+02 Score=24.12 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.6
Q ss_pred chHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHH
Q psy11766 60 SRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIM 100 (248)
Q Consensus 60 sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~ 100 (248)
+..+.+.-.+|..+|-| +.-.|....+.+|..-.+..++.
T Consensus 4 s~~q~~~l~~~~~iG~g-il~~P~~~~~~a~~~~wi~~ll~ 43 (359)
T TIGR00912 4 SSKQLIFLISSTMIGSG-LLTLPALVSQSAGQDGWISIILG 43 (359)
T ss_pred cHHHHHHHHHHHHHHHH-HHhhhHHHHhccCCCeeHHHHHH
Confidence 44677777888888887 88899998887775444444443
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=23.75 E-value=1.4e+02 Score=29.61 Aligned_cols=31 Identities=32% Similarity=0.533 Sum_probs=21.9
Q ss_pred C-CchHHHHHHHHHhhhcCCceeecchhhhhcC
Q psy11766 58 W-GSRWEFLLSCVGLSVGIGNVWRFPYLAYQNG 89 (248)
Q Consensus 58 W-~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nG 89 (248)
| +..+.-++++.|-|||-|=+ -.|-..+..|
T Consensus 17 w~~~d~~W~l~l~GTAIGAGmL-fLPI~~g~~G 48 (443)
T PRK13629 17 WRKSDTTWTLGLFGTAIGAGVL-FFPIRAGFGG 48 (443)
T ss_pred CccccchHHHHHHHHHHhHHHH-HHHHHHhcch
Confidence 6 33456679999999998744 4687766544
No 15
>PF11143 DUF2919: Protein of unknown function (DUF2919); InterPro: IPR021318 This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.
Probab=22.83 E-value=2.4e+02 Score=23.79 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=36.7
Q ss_pred HHHHHHhhhhhHHHHHHhhhcCCCCh--hhhhhhccccccchhhHHHHHHHHHhh---------------hHHHHHHHHH
Q psy11766 98 LIMLVLAGKPMYFLELAVGQFGGVGP--LGLWNCCPIAKGVGVAMVTVSLIVCIY---------------YNVIMSYTLY 160 (248)
Q Consensus 98 ~i~l~l~GiPll~lE~~lGQ~~~~g~--i~~~~~~p~~kGIG~~~ili~fli~iY---------------Y~VIiaW~L~ 160 (248)
+..-++.|+|.+.+=+..|++.+.-. ...|+. .+++=.+.+++-+...+| -.++..|++.
T Consensus 56 f~lgL~~g~Pall~~~l~~~R~~~~~~~~~lwr~---~r~lLl~~~~~~l~~~~~~l~~~~~~fs~~~~~~~ll~~~~l~ 132 (149)
T PF11143_consen 56 FYLGLAAGLPALLLMLLSGRRHRSPRWLNRLWRA---GRWLLLLSLLVDLVWQLYHLWLQHGAFSWSNALTLLLLLWALI 132 (149)
T ss_pred HHHHHHHhHHHHHHHHHHccCCCCchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 44457788998777799998876432 113332 222223333333322222 2356778888
Q ss_pred HHHHhh
Q psy11766 161 YMFSSL 166 (248)
Q Consensus 161 Yl~~Sf 166 (248)
|++.|=
T Consensus 133 yL~~Sr 138 (149)
T PF11143_consen 133 YLLKSR 138 (149)
T ss_pred HHHHcc
Confidence 888763
No 16
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=22.47 E-value=4.7e+02 Score=24.41 Aligned_cols=64 Identities=17% Similarity=0.053 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhh-hHHHHHHhhhcCCCChhhhhh
Q psy11766 62 WEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKP-MYFLELAVGQFGGVGPLGLWN 128 (248)
Q Consensus 62 ~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiP-ll~lE~~lGQ~~~~g~i~~~~ 128 (248)
-++....+|..+|.|-+---+..... + +...+.+++..++.... +.+.|++- ++.+.|..-.|-
T Consensus 18 ~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~-~~p~~GG~y~~~ 82 (466)
T COG0531 18 DLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSS-AIPSAGGAYAYA 82 (466)
T ss_pred HHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCeeeeh
Confidence 33677777777774433333333333 2 23333366665555555 88889988 888888666664
No 17
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=20.89 E-value=3.1e+02 Score=27.50 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=50.2
Q ss_pred chHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCC-CChhhhhh
Q psy11766 60 SRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGG-VGPLGLWN 128 (248)
Q Consensus 60 sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~-~g~i~~~~ 128 (248)
|.++-+.++++..||.|||--=..=..--|=||=+ ++-..-++|.-.-+.|..|+|.-| ++.-+-++
T Consensus 64 S~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvF--WMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~ 131 (452)
T COG1115 64 SSFQALMTSLAARVGTGNIAGVATAIALGGPGAVF--WMWIVALFGMATKFAESTLAQKYRVKDKDGEYR 131 (452)
T ss_pred ChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHH--HHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCc
Confidence 67999999999999999998666555544445544 555667788889999999999665 55445454
Done!