Query psy11766
Match_columns 248
No_of_seqs 182 out of 1312
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:23:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 100.0 1.1E-41 3.9E-46 331.7 5.6 174 54-248 4-187 (519)
2 3u2a_A Ggdef family protein; p 16.7 29 0.001 27.1 0.0 9 240-248 93-101 (129)
3 3u85_B Histone-lysine N-methyl 11.9 52 0.0018 18.2 0.1 9 78-86 2-10 (21)
4 3gia_A Uncharacterized protein 11.8 4.2E+02 0.014 23.2 6.3 42 60-102 9-50 (444)
5 1jb0_X Photosystem I subunit P 7.5 2.4E+02 0.0083 17.5 2.0 15 139-153 18-32 (35)
6 2heq_A YORP protein; SH3-like, 7.3 1.4E+02 0.0049 21.6 1.0 26 203-228 8-33 (84)
7 4djk_A Probable glutamate/gamm 5.8 5.7E+02 0.02 22.8 4.5 51 60-115 14-66 (511)
8 3arc_M Photosystem II reaction 5.6 3.8E+02 0.013 16.8 2.1 22 96-117 7-28 (36)
9 3arc_I Photosystem II reaction 4.7 4.7E+02 0.016 16.5 2.2 14 95-108 7-20 (38)
10 4hkr_A Calcium release-activat 4.6 8.8E+02 0.03 20.7 4.5 17 99-115 117-133 (214)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=100.00 E-value=1.1e-41 Score=331.69 Aligned_cols=174 Identities=30% Similarity=0.409 Sum_probs=140.6
Q ss_pred cCCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhh----cCCCChhhhhhh
Q psy11766 54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQ----FGGVGPLGLWNC 129 (248)
Q Consensus 54 ~R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ----~~~~g~i~~~~~ 129 (248)
+|++|+||++|+|||+|+||||||+|||||+|++||||||+|||+++++++|+|++++|+++|| ++|++++++|++
T Consensus 4 ~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~ 83 (519)
T 2a65_A 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYL 83 (519)
T ss_dssp -CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999 888899999975
Q ss_pred c-cc--cccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCC--CCCCCCCCCCCCCccccccccccccccccceee
Q psy11766 130 C-PI--AKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVP--WSKCDPEWADMSTCYVRGVNVSMSHVESARVCY 204 (248)
Q Consensus 130 ~-p~--~kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LP--W~~C~n~WNt~~~C~~~~~~~s~~~~~s~~~~y 204 (248)
+ |. |+|+|++++++++++++||++|++|+++|+++||++++| |++|+ +|.+. .++..+|
T Consensus 84 l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~-------~~~~~---------~~~~~~~ 147 (519)
T 2a65_A 84 LWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT-------DPDSI---------LRPFKEF 147 (519)
T ss_dssp HSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--C-------CHHHH---------HHHHHHH
T ss_pred hcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-------Ccccc---------cCcHHHH
Confidence 4 65 999999999999999999999999999999999999999 54432 12110 1223344
Q ss_pred ccccccc-ccccceecccCCCCCCCcccccCchhhhhhceeeccC
Q psy11766 205 SPSRISH-VGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV 248 (248)
Q Consensus 205 ~~~~i~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (248)
+.+.++. .++.+. | ..+++...-+...|++++.|.+|||
T Consensus 148 f~~~l~~~~~~~~~----g-~~~~~~~~~~~~~w~i~~~ii~~Gv 187 (519)
T 2a65_A 148 LYSYIGVPKGDEPI----L-KPSLFAYIVFLITMFINVSILIRGI 187 (519)
T ss_dssp HHHHHTCCSSSSCB----C-CCCHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCCCcccc----c-CccHHHHHHHHHHHHHHHHHHHHhh
Confidence 4332221 111111 1 1245555557889999999999997
No 2
>3u2a_A Ggdef family protein; phosphodiesterase, proteolysis, cell-cycle, CLPXP, cyclic DI hydrolase; 1.70A {Caulobacter vibrioides}
Probab=16.68 E-value=29 Score=27.15 Aligned_cols=9 Identities=56% Similarity=0.844 Sum_probs=6.9
Q ss_pred hhceeeccC
Q psy11766 240 MSTCYVRGV 248 (248)
Q Consensus 240 ~~~~~~~~~ 248 (248)
+.||+||||
T Consensus 93 ~~tC~WRGV 101 (129)
T 3u2a_A 93 GETCLWRGV 101 (129)
T ss_dssp SCEEEEEEE
T ss_pred CceeEEEee
Confidence 468888886
No 3
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=11.95 E-value=52 Score=18.24 Aligned_cols=9 Identities=44% Similarity=0.866 Sum_probs=6.4
Q ss_pred eeecchhhh
Q psy11766 78 VWRFPYLAY 86 (248)
Q Consensus 78 iWRFPyL~~ 86 (248)
=||||.--+
T Consensus 2 rwrfparpg 10 (21)
T 3u85_B 2 RWRFPARPG 10 (26)
T ss_pred ccccccCCC
Confidence 399997644
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=11.80 E-value=4.2e+02 Score=23.18 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHH
Q psy11766 60 SRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLV 102 (248)
Q Consensus 60 sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~ 102 (248)
+..+.++-.+|..+|.|-+-..+. ..+++|..-++.|++..+
T Consensus 9 ~~~~~~~l~~g~~iG~gi~~~~~~-~~~~~G~~~~~~~li~~~ 50 (444)
T 3gia_A 9 SLWEAVSMAVGVMIGASIFSIFGV-GAKIAGRNLPETFILSGI 50 (444)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSHHH-HHHHHGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCcHHHHHHHHHHH
Confidence 557777888888899886655444 445555555555554443
No 5
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=7.50 E-value=2.4e+02 Score=17.45 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhhhHH
Q psy11766 139 AMVTVSLIVCIYYNV 153 (248)
Q Consensus 139 ~~ili~fli~iYY~V 153 (248)
..+.+.|+++.||--
T Consensus 18 llLaINflVAayYFh 32 (35)
T 1jb0_X 18 LLLAINFLVAAYYFA 32 (35)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 445577888888753
No 6
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=7.29 E-value=1.4e+02 Score=21.61 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=16.7
Q ss_pred eecccccccccccceecccCCCCCCC
Q psy11766 203 CYSPSRISHVGISHVKASFACPPHTS 228 (248)
Q Consensus 203 ~y~~~~i~~~g~~~~~~~~~~~~~~~ 228 (248)
.||.-++-.-=+++-+|-+|||-|--
T Consensus 8 KyWsYp~gl~VeIN~NAkygcPhhVG 33 (84)
T 2heq_A 8 KYWSYPVGLAVEINNNARYGCPHHVG 33 (84)
T ss_dssp SSCCSCTTCEEEECTTCTTTSTTCCS
T ss_pred cccccCCCCEEEEcCCcccCCccccc
Confidence 35555554444557789999997543
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=5.76 E-value=5.7e+02 Score=22.82 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=30.0
Q ss_pred chHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhh--hHHHHHHh
Q psy11766 60 SRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKP--MYFLELAV 115 (248)
Q Consensus 60 sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiP--ll~lE~~l 115 (248)
+..+.++-.+|..+|+..+. . ...+|-+.++.+++..++..+| +.+.|++-
T Consensus 14 ~~~~~~~l~~~~~ig~~~~~---~--~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s 66 (511)
T 4djk_A 14 TLLGFFAITASMVMAVYEYP---T--FATSGFSLVFFLLLGGILWFIPVGLCAAEMAT 66 (511)
T ss_dssp CHHHHHHHTGGGGCCGGGHH---H--HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhhchhH---H--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55677777888888765433 2 3455555555444444444444 55677765
No 8
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=5.57 E-value=3.8e+02 Score=16.75 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhhHHHHHHhhh
Q psy11766 96 PYLIMLVLAGKPMYFLELAVGQ 117 (248)
Q Consensus 96 pY~i~l~l~GiPll~lE~~lGQ 117 (248)
.|+..++++.+|..++=+..=|
T Consensus 7 ~fiAt~Lfi~iPt~FLlilYvq 28 (36)
T 3arc_M 7 GLIATALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhe
Confidence 5777888888887666544433
No 9
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=4.74 E-value=4.7e+02 Score=16.50 Aligned_cols=14 Identities=7% Similarity=0.123 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhhh
Q psy11766 95 IPYLIMLVLAGKPM 108 (248)
Q Consensus 95 IpY~i~l~l~GiPl 108 (248)
+.|.+.++++++.+
T Consensus 7 ~Vy~vV~ffvsLFi 20 (38)
T 3arc_I 7 TVYIVVTFFVLLFV 20 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHH
Confidence 45666666655543
No 10
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=4.56 E-value=8.8e+02 Score=20.72 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=14.0
Q ss_pred HHHHHhhhhhHHHHHHh
Q psy11766 99 IMLVLAGKPMYFLELAV 115 (248)
Q Consensus 99 i~l~l~GiPll~lE~~l 115 (248)
++-..+|++||+.|+++
T Consensus 117 ~fST~lGi~LFL~eval 133 (214)
T 4hkr_A 117 AFSTLLGLILFLLEIAI 133 (214)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44568899999999987
Done!