RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11766
         (248 letters)



>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
           protein, transport protein; HET: BOG; 1.65A {Aquifex
           aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
           2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
           3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
           3uso_A 3usp_A* 3qs5_A* ...
          Length = 519

 Score =  131 bits (331), Expect = 2e-35
 Identities = 47/121 (38%), Positives = 69/121 (57%), Gaps = 7/121 (5%)

Query: 53  AERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLE 112
            +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E
Sbjct: 3   VKREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIE 62

Query: 113 LAVGQFGGVGPLG-------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
            A+G++GG    G       L      AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 63  WAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122

Query: 166 L 166
           L
Sbjct: 123 L 123


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 56/175 (32%)

Query: 30  VARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWR----FPYLA 85
           +       T     +   +  A+AE  SW S +  +   + +   IG   R    +P  +
Sbjct: 263 LRSYLKGATGHSQGL--VTAVAIAETDSWESFFVSVRKAITVLFFIG--VRCYEAYPNTS 318

Query: 86  Y---------QNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGV 136
                     +N  G    P   ML ++      ++  V +     P G           
Sbjct: 319 LPPSILEDSLENNEGV---PSP-MLSISNLTQEQVQDYVNKTNSHLPAG----------- 363

Query: 137 GVAMVTVSLIVCIYYN-----VIMSY--TLYYMFSSL----------QFDVPWSK 174
               V +SL+     N     V+     +LY +  +L          Q  +P+S+
Sbjct: 364 --KQVEISLV-----NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 29.1 bits (65), Expect = 1.9
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 16/47 (34%)

Query: 53  AERGSWGS---RWEF----LLS---CVGLSVGIGNVWRFPYLAYQNG 89
           AE G WGS   RWE       S   CV ++  +G      +++Y NG
Sbjct: 826 AEVGPWGSARTRWEMEAFGEFSLEGCVEMAWIMG------FISYHNG 866


>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
           unknown function, hydrolase, PSI-2, protein structure
           initiative; 1.50A {Streptomyces coelicolor}
          Length = 302

 Score = 26.8 bits (59), Expect = 6.8
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 169 DVPWSKCDPEWADMSTCYVRGVNVSMS 195
            +     D   AD+      G  V +S
Sbjct: 55  GLGGYTVDQFKADVRAKQAAGKKVIIS 81


>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
           membrane protein, LCP, mesophase, structural genomics,
           PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
          Length = 488

 Score = 26.6 bits (58), Expect = 9.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 77  NVWRFPYLAYQNGGGAFLIPYLIMLVL 103
           +V    Y+ Y N     L+P L+ML +
Sbjct: 185 DVVPMNYMVYFNFFACVLVPLLLMLGV 211


>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
           engineering, GPCR network, PSI-biology, struct genomics,
           membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
           {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
           3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
          Length = 447

 Score = 26.6 bits (58), Expect = 9.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 75  IGNVWRFPYLAYQNGGGAFLIPYLIMLVL 103
             +V    Y+ Y N     L+P L+ML +
Sbjct: 193 FEDVVPMNYMVYFNFFACVLVPLLLMLGV 221


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.137    0.455 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,015,282
Number of extensions: 230091
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 9
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.8 bits)