RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11766
         (248 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score =  159 bits (403), Expect = 2e-46
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 7/134 (5%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E A
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60

Query: 115 VGQFGGVGPLGLWN-------CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQ 167
           +G++GG    G              AK +GV  + + L+V IYY  I S+TL +    L 
Sbjct: 61  MGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLV 120

Query: 168 FDVPWSKCDPEWAD 181
             VP    +    D
Sbjct: 121 GLVPEPPPNATDPD 134


>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
           beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 192

 Score = 25.9 bits (57), Expect = 3.9
 Identities = 6/30 (20%), Positives = 10/30 (33%)

Query: 18  ERAHHRRFSAHIVARRESTFTSIDAAIRRP 47
              H  R  A +  RR     +   A++  
Sbjct: 81  VETHMARVEAMLNDRRRLALENYITALQAV 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.455 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 984,156
Number of extensions: 44092
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 3
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)