RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11767
(966 letters)
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 260 bits (668), Expect = 2e-80
Identities = 97/273 (35%), Positives = 147/273 (53%), Gaps = 43/273 (15%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK------IDCSEEINLLRACQGHPNIVNLHC 438
LG+GS+ +K TG+ A+K+I +K EI +L+ + HPNIV L+
Sbjct: 6 KLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLK-HPNIVRLYD 64
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
VF+DE YLV+E +GG+L D ++++GR +E+EA +RQ+++A+ ++HS+G+VHRD
Sbjct: 65 VFEDEDKLYLVMEYCEGGDLFDLLKKRGR--LSEDEARFYLRQILSALEYLHSKGIVHRD 122
Query: 499 LKPENLLFSDPAGDNIKVVDFGFACLKRES--LHTPCFTLQYAAPEVLRQDKSGYDENCD 556
LKPEN+L + ++K+ DFG A L T T +Y APEVL
Sbjct: 123 LKPENILLDED--GHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGK--------- 171
Query: 557 LWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIKE 616
GY + D+WSLGVILY +L G+ PF DD L + +I +
Sbjct: 172 -----------------GYGKAVDIWSLGVILYELLTGKPPFPG---DDQLLELFKKIGK 211
Query: 617 GQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ F W +S EAK+L + LL +P +R+
Sbjct: 212 PKPPFPPPEWD-ISPEAKDLIRKLLVKDPEKRL 243
Score = 99.5 bits (249), Expect = 3e-23
Identities = 31/74 (41%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 892 NVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPE 951
YLV+E +GG+L D ++++GR +E+EA +RQ+++A+ ++HS+G+VHRDLKPE
Sbjct: 69 EDKLYLVMEYCEGGDLFDLLKKRGR--LSEDEARFYLRQILSALEYLHSKGIVHRDLKPE 126
Query: 952 NLLLSGISGNLIKI 965
N+LL +K+
Sbjct: 127 NILLD--EDGHVKL 138
Score = 65.2 bits (160), Expect = 2e-11
Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 71/197 (36%)
Query: 123 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNICRRCVEKSTGQ 182
LG+GS+ +K TG+ A+K+I +K + +LR
Sbjct: 6 KLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILR------------------- 46
Query: 183 EYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQD--------EVIDWDD-FSRGIE 233
EI +L+ + HPNIV L+ VF+D E + D F +
Sbjct: 47 ---------------EIKILKKLK-HPNIVRLYDVFEDEDKLYLVMEYCEGGDLFDLLKK 90
Query: 234 CVFFSSSLIIFFI--ILSFTLSFIHDYYHIQYRRILKTEPPIPEDLSPD----------- 280
S F++ ILS L ++H I +R DL P+
Sbjct: 91 RGRLSEDEARFYLRQILS-ALEYLHS-KGIVHR-----------DLKPENILLDEDGHVK 137
Query: 281 VADF-ISRLLVKDPRRR 296
+ADF ++R L +
Sbjct: 138 LADFGLARQLDPGEKLT 154
Score = 58.7 bits (143), Expect = 3e-09
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 242 IIFFIILSFTLSFIHDY-YHIQYRRILKTEPPIPE---DLSPDVADFISRLLVKDPRRRL 297
+I + +L+ F D +++I K +PP P D+SP+ D I +LLVKDP +RL
Sbjct: 184 VILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWDISPEAKDLIRKLLVKDPEKRL 243
Query: 298 GGGELDAEELKRHPFF 313
AEE +HPFF
Sbjct: 244 T-----AEEALQHPFF 254
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 247 bits (632), Expect = 3e-75
Identities = 98/276 (35%), Positives = 137/276 (49%), Gaps = 41/276 (14%)
Query: 384 GILGDGSYSVCRRCVEKSTGQEYAVKIIS-RKIDCSE------EINLLRACQGHPNIVNL 436
LG GS+ + K TG+ AVKI+ R + EI +LR HPNIV L
Sbjct: 5 RKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLS-HPNIVRL 63
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
F+D+ H YLV+E +GG+L D + + G +E+EA +I Q++ + ++HS G++H
Sbjct: 64 IDAFEDKDHLYLVMEYCEGGDLFDYLSRGGP--LSEDEAKKIALQILRGLEYLHSNGIIH 121
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLK---RESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLKPEN+L + +K+ DFG A SL T T Y APEVL
Sbjct: 122 RDLKPENILLDEN--GVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLL-------- 171
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
+GY D+WSLGVILY +L G+ PF + D L ++ R
Sbjct: 172 -----------------GGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQ-LQLIRR 213
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
I FD WS+ S EAK+L K L +P++R
Sbjct: 214 ILGPPLEFDEPKWSSGSEEAKDLIKKCLNKDPSKRP 249
Score = 93.5 bits (233), Expect = 5e-21
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 890 RYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 949
H YLV+E +GG+L D + + G +E+EA +I Q++ + ++HS G++HRDLK
Sbjct: 68 EDKDHLYLVMEYCEGGDLFDYLSRGGP--LSEDEAKKIALQILRGLEYLHSNGIIHRDLK 125
Query: 950 PENLLLS 956
PEN+LL
Sbjct: 126 PENILLD 132
Score = 58.4 bits (142), Expect = 3e-09
Identities = 33/148 (22%), Positives = 47/148 (31%), Gaps = 48/148 (32%)
Query: 122 GILGDGSYSVCRRCVEKSTGQEYAVKIIS-RKIDCSEEINLLRACQGHPNICRRCVEKST 180
LG GS+ + K TG+ AVKI+ R ++ R
Sbjct: 5 RKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARR----------------- 47
Query: 181 GQEYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDE-----VIDW----DDFSRG 231
EI +LR HPNIV L F+D+ V+++ D F
Sbjct: 48 -----------------EIRILRRLS-HPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYL 89
Query: 232 IECVFFSSSLIIFFI--ILSFTLSFIHD 257
S IL L ++H
Sbjct: 90 SRGGPLSEDEAKKIALQILR-GLEYLHS 116
Score = 51.1 bits (123), Expect = 8e-07
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 242 IIFFIILSFTLSFIHDYYHIQ---YRRILKTEPPIPE----DLSPDVADFISRLLVKDPR 294
+I + +L+ F + Q RRIL E S + D I + L KDP
Sbjct: 187 VILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDLIKKCLNKDPS 246
Query: 295 RRLGGGELDAEELKRHPFF 313
+R AEE+ +HP+F
Sbjct: 247 KRPT-----AEEILQHPWF 260
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 208 bits (532), Expect = 3e-61
Identities = 95/275 (34%), Positives = 137/275 (49%), Gaps = 50/275 (18%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRK-------IDCS-EEINLLRACQGHPNIVNLH 437
LG GS+ +K TG+ YA+K++ +K ++ + E N+L HP IV LH
Sbjct: 1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRIN-HPFIVKLH 59
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 497
FQ E YLVLE GGEL + ++GR F+E A ++V A+ ++HS G+++R
Sbjct: 60 YAFQTEEKLYLVLEYAPGGELFSHLSKEGR--FSEERARFYAAEIVLALEYLHSLGIIYR 117
Query: 498 DLKPENLLFSDPAGDNIKVVDFGFA---CLKRESLHTPCFTLQYAAPEVLRQDKSGYDEN 554
DLKPEN+L D G +IK+ DFG A + +T C T +Y APEVL
Sbjct: 118 DLKPENILL-DADG-HIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLL--------- 166
Query: 555 CDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARI 614
GY + D WSLGV+LY ML G+ PF+A R + I +I
Sbjct: 167 -----------------GKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKE----IYEKI 205
Query: 615 KEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ F +S EA++L LL +P +R+
Sbjct: 206 LKDPLRFP----EFLSPEARDLISGLLQKDPTKRL 236
Score = 79.9 bits (198), Expect = 2e-16
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
YLVLE GGEL + ++GR F+E A ++V A+ ++HS G+++RDLKPEN+
Sbjct: 67 KLYLVLEYAPGGELFSHLSKEGR--FSEERARFYAAEIVLALEYLHSLGIIYRDLKPENI 124
Query: 954 LL 955
LL
Sbjct: 125 LL 126
Score = 75.2 bits (186), Expect = 6e-15
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 242 IIFFIILSFTLSFIHDYYHIQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGE 301
++ + +L+ F + Y +ILK PE LSP+ D IS LL KDP +RLG G
Sbjct: 181 VLLYEMLTGKPPFYAEDRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGG 240
Query: 302 LDAEELKRHPFF 313
AEE+K HPFF
Sbjct: 241 --AEEIKAHPFF 250
Score = 42.9 bits (102), Expect = 4e-04
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 33/98 (33%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNICRRCVEKSTGQE 183
LG GS+ +K TG+ YA+K++ +K I +R + T E
Sbjct: 1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKK-----------------KIIKRKEVEHTLTE 43
Query: 184 YAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDE 221
+ I +I+ HP IV LH FQ E
Sbjct: 44 ---RNILSRIN-------------HPFIVKLHYAFQTE 65
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 186 bits (474), Expect = 7e-54
Identities = 74/188 (39%), Positives = 107/188 (56%), Gaps = 13/188 (6%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRK------IDCSEEINLLRACQGHPNIVNLHCV 439
LG+G + +K TG++ A+KII ++ + EI +L+ HPNIV L+ V
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLN-HPNIVKLYGV 59
Query: 440 FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDL 499
F+DE H YLV+E +GG L D +++ +E+E RI+ Q++ + ++HS G++HRDL
Sbjct: 60 FEDENHLYLVMEYCEGGSLKDLLKEN-EGKLSEDEILRILLQILEGLEYLHSNGIIHRDL 118
Query: 500 KPENLLFSDPAGDNIKVVDFGFACLKRES---LHTPCFTLQYAAPEVLRQDKSGYDENCD 556
KPEN+L +K+ DFG + L L T T Y APEVL K Y E D
Sbjct: 119 KPENILLDSD-NGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLG-KGYYSEKSD 176
Query: 557 LWSLGVIL 564
+WSLGVIL
Sbjct: 177 IWSLGVIL 184
Score = 87.7 bits (218), Expect = 2e-19
Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
H YLV+E +GG L D +++ +E+E RI+ Q++ + ++HS G++HRDLKPEN+
Sbjct: 65 HLYLVMEYCEGGSLKDLLKEN-EGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENI 123
Query: 954 LLSGISGNLIKI 965
LL +G +K+
Sbjct: 124 LLDSDNGK-VKL 134
Score = 46.5 bits (111), Expect = 2e-05
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRK------IDCSEEINLLRACQGHPNICR 173
LG+G + +K TG++ A+KII ++ + EI +L+ HPNI +
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLN-HPNIVK 55
Score = 44.5 bits (106), Expect = 7e-05
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 174 RCVEKSTGQEYAVKIISRK------IDCSEEINLLRACQGHPNIVNLHCVFQDE 221
+K TG++ A+KII ++ + EI +L+ HPNIV L+ VF+DE
Sbjct: 11 LARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLN-HPNIVKLYGVFEDE 63
Score = 31.4 bits (72), Expect = 1.8
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 279 PDVADFISRLLVKDPRRRLGGGELDAEELKRHP 311
P++ D I ++L KDP +R A+E+ H
Sbjct: 188 PELKDLIRKMLQKDPEKR-----PSAKEILEHL 215
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 182 bits (464), Expect = 1e-51
Identities = 86/298 (28%), Positives = 132/298 (44%), Gaps = 73/298 (24%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIIS-------RKID--CSEEINLLRACQGHPNIVN 435
I+G+GS+S EK T +EYA+KI+ +K+ E+ L R GHP I+
Sbjct: 8 IIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTR-LNGHPGIIK 66
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
L+ FQDE + Y VLE GELL IR+ G E +++ A+ ++HS+G++
Sbjct: 67 LYYTFQDEENLYFVLEYAPNGELLQYIRKYGS--LDEKCTRFYAAEILLALEYLHSKGII 124
Query: 496 HRDLKPENLLFSDPAGDN-IKVVDFGFA----------------CLKRESLHTP------ 532
HRDLKPEN+L D IK+ DFG A +
Sbjct: 125 HRDLKPENILLDK---DMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFAS 181
Query: 533 -CFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTM 591
T +Y +PE+L + +G + DLW+LG I+Y M
Sbjct: 182 FVGTAEYVSPELLNEKPAGK--------------------------SSDLWALGCIIYQM 215
Query: 592 LCGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
L G+ PF R + +I + +++F +AK+L + LL ++P R+
Sbjct: 216 LTGKPPF----RGSNEYLTFQKILKLEYSFP----PNFPPDAKDLIEKLLVLDPQDRL 265
Score = 78.0 bits (193), Expect = 1e-15
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y VLE GELL IR+ G E +++ A+ ++HS+G++HRDLKPEN+LL
Sbjct: 78 YFVLEYAPNGELLQYIRKYGS--LDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILL 135
Query: 956 S 956
Sbjct: 136 D 136
Score = 67.6 bits (166), Expect = 4e-12
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 258 YYHIQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
Y +++ILK E P + PD D I +LLV DP+ RLG E +ELK HPFF
Sbjct: 227 EYLT-FQKILKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNE-GYDELKAHPFF 280
Score = 54.9 bits (133), Expect = 7e-08
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 32/99 (32%)
Query: 123 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNICRRCVEKSTGQ 182
I+G+GS+S EK T +EYA+KI+ ++ L++ EK +
Sbjct: 8 IIGEGSFSTVVLAKEKETNKEYAIKILDKR-------QLIK-------------EK---K 44
Query: 183 EYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDE 221
VKI E +L GHP I+ L+ FQDE
Sbjct: 45 VKYVKI---------EKEVLTRLNGHPGIIKLYYTFQDE 74
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 176 bits (450), Expect = 1e-49
Identities = 96/271 (35%), Positives = 140/271 (51%), Gaps = 47/271 (17%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS-RKI-------DCSEEINLLRACQGHPNIVNLH 437
LG GS+ K +G+ YA+KI+S KI E +L++ + HP +VNL+
Sbjct: 9 LGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIR-HPFLVNLY 67
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 497
FQD+ + YLV+E + GGEL +R+ GR F E A Q+V A+ ++HS +V+R
Sbjct: 68 GSFQDDSNLYLVMEYVPGGELFSHLRKSGR--FPEPVARFYAAQVVLALEYLHSLDIVYR 125
Query: 498 DLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDL 557
DLKPENLL D G IK+ DFGFA + +T C T +Y APE++
Sbjct: 126 DLKPENLLL-DSDG-YIKITDFGFAKRVKGRTYTLCGTPEYLAPEIIL------------ 171
Query: 558 WSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIKEG 617
GY + D W+LG+++Y ML G PF DD+ + I +I EG
Sbjct: 172 --------------SKGYGKAVDWWALGILIYEMLAGYPPF----FDDNPIQIYEKILEG 213
Query: 618 QFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+ F S S +AK+L ++LL V+ +R
Sbjct: 214 KVRFP----SFFSPDAKDLIRNLLQVDLTKR 240
Score = 98.4 bits (246), Expect = 2e-22
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
Y +IL+ + P SPD D I LL D +RLG + ++K HP+F IDW L
Sbjct: 207 YEKILEGKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGIDWIALL 266
Query: 323 TKRIPAPFVPKISNELDVSNFSD 345
++I APF+PK+ D SNF D
Sbjct: 267 QRKIEAPFIPKVKGPGDTSNFDD 289
Score = 69.9 bits (172), Expect = 8e-13
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV+E + GGEL +R+ GR F E A Q+V A+ ++HS +V+RDLKPENLLL
Sbjct: 77 YLVMEYVPGGELFSHLRKSGR--FPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLL 134
Score = 37.1 bits (87), Expect = 0.028
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 36/138 (26%)
Query: 173 RRCVEKSTGQEYAVKIIS-RKI-------DCSEEINLLRACQGHPNIVNLHCVFQDE--- 221
K +G+ YA+KI+S KI E +L++ + HP +VNL+ FQD+
Sbjct: 18 MLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIR-HPFLVNLYGSFQDDSNL 76
Query: 222 --VIDW----DDFSRGIECVFFSSSLIIFF---IILSFTLSFIHDYYHIQYRRILKTEPP 272
V+++ + FS + F + F+ ++L L ++H I YR LK
Sbjct: 77 YLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVL--ALEYLHS-LDIVYRD-LK---- 128
Query: 273 IPEDLSPD------VADF 284
PE+L D + DF
Sbjct: 129 -PENLLLDSDGYIKITDF 145
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 164 bits (417), Expect = 2e-45
Identities = 71/275 (25%), Positives = 124/275 (45%), Gaps = 48/275 (17%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS-------RKIDCSEEINLLRACQGHPNIVNLHC 438
+G GS+ KS G+ Y +K I + D E+ +L+ HPNI+ +
Sbjct: 8 IGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLN-HPNIIKYYE 66
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCG--FTENEASRIMRQLVAAVHFMHSRGVVH 496
F+++ +V+E GG+L +I+++ + G F E + QL A+ ++HSR ++H
Sbjct: 67 SFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILH 126
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRESL---HTPCFTLQYAAPEVLRQDKSGYDE 553
RD+KP+N+ + +K+ DFG + + ++ T T Y +PE+ +
Sbjct: 127 RDIKPQNIFLTS--NGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKP----- 179
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
Y+ D+WSLG +LY + + PF + L + +
Sbjct: 180 ---------------------YNYKSDIWSLGCVLYELCTLKHPFEGENL----LELALK 214
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
I +GQ+ S SSE + L SLL +P +R
Sbjct: 215 ILKGQY---PPIPSQYSSELRNLVSSLLQKDPEER 246
Score = 73.3 bits (181), Expect = 3e-14
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 892 NVHTYLVLELLKGGELLDRIRQKGRCG--FTENEASRIMRQLVAAVHFMHSRGVVHRDLK 949
+V+E GG+L +I+++ + G F E + QL A+ ++HSR ++HRD+K
Sbjct: 71 KGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIK 130
Query: 950 PENLLLSGISGNLIKI 965
P+N+ L+ S L+K+
Sbjct: 131 PQNIFLT--SNGLVKL 144
Score = 42.5 bits (101), Expect = 6e-04
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 28/112 (25%)
Query: 177 EKSTGQEYAVKIIS-------RKIDCSEEINLLRACQGHPNIVNLHCVFQD--------E 221
KS G+ Y +K I + D E+ +L+ HPNI+ + F++ E
Sbjct: 21 RKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLN-HPNIIKYYESFEEKGKLCIVME 79
Query: 222 VIDWDDFSRGIE-----CVFFSSSLII-FFIILSFTLSFIHDYYHIQYRRIL 267
D D S+ I+ F I+ +F+ L L ++H R+IL
Sbjct: 80 YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHS------RKIL 125
Score = 34.0 bits (79), Expect = 0.30
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 264 RRILKTE-PPIPEDLSPDVADFISRLLVKDPRRR 296
+ILK + PPIP S ++ + +S LL KDP R
Sbjct: 213 LKILKGQYPPIPSQYSSELRNLVSSLLQKDPEER 246
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 159 bits (405), Expect = 7e-44
Identities = 90/278 (32%), Positives = 136/278 (48%), Gaps = 45/278 (16%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKI----DCSEEI----NLLRACQGHPNIVNLH 437
LG G + KS + +A+K + ++ E I +L C HP IV L+
Sbjct: 1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECN-HPFIVKLY 59
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 497
F+D+ + Y+++E GGEL +R +G F E A + +V A ++H+RG+++R
Sbjct: 60 RTFKDKKYIYMLMEYCLGGELWTILRDRGL--FDEYTARFYIACVVLAFEYLHNRGIIYR 117
Query: 498 DLKPENLLFSDPAGDNIKVVDFGFA--CLKRESLHTPCFTLQYAAPEVLRQDKSGYDENC 555
DLKPENLL D G +K+VDFGFA + T C T +Y APE++ +K
Sbjct: 118 DLKPENLLL-DSNG-YVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEII-LNK------- 167
Query: 556 DLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIK 615
GYD + D WSLG++LY +L GR PF D+ + I I
Sbjct: 168 ------------------GYDFSVDYWSLGILLYELLTGRPPF--GEDDEDPMEIYNDIL 207
Query: 616 EGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRIRMMR 653
+G N E + + AK+L K LL NP +R+ ++
Sbjct: 208 KG--NGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLK 243
Score = 66.1 bits (162), Expect = 8e-12
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 882 RRTFVNRSRYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 941
RTF ++ + Y+++E GGEL +R +G F E A + +V A ++H+R
Sbjct: 59 YRTFKDKK----YIYMLMEYCLGGELWTILRDRGL--FDEYTARFYIACVVLAFEYLHNR 112
Query: 942 GVVHRDLKPENLLLS 956
G+++RDLKPENLLL
Sbjct: 113 GIIYRDLKPENLLLD 127
Score = 53.4 bits (129), Expect = 2e-07
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 263 YRRILKTEPPI--PEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDD 320
Y ILK + P + D I +LL ++P RLG + +++K+H +FN DW+
Sbjct: 203 YNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNGFDWEG 262
Score = 33.4 bits (77), Expect = 0.50
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 178 KSTGQEYAVKIISRKI----DCSEEI----NLLRACQGHPNIVNLHCVFQDE 221
KS + +A+K + ++ E I +L C HP IV L+ F+D+
Sbjct: 15 KSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECN-HPFIVKLYRTFKDK 65
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit;
Provisional.
Length = 329
Score = 158 bits (402), Expect = 9e-43
Identities = 93/283 (32%), Positives = 134/283 (47%), Gaps = 55/283 (19%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQ---------- 428
D + LG GS+ R K TG+ YA+K + ++ EI ++ Q
Sbjct: 19 DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKR-----EILKMKQVQHVAQEKSILM 73
Query: 429 --GHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAV 486
HP IVN+ C FQDE Y +LE + GGEL +R+ GR F + A +LV A
Sbjct: 74 ELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAGR--FPNDVAKFYHAELVLAF 131
Query: 487 HFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQ 546
++HS+ +++RDLKPENLL D G ++KV DFGFA + T C T +Y APEV+ Q
Sbjct: 132 EYLHSKDIIYRDLKPENLLL-DNKG-HVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVI-Q 188
Query: 547 DKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDS 606
K G+ + D W++GV+LY + G PF DD+
Sbjct: 189 SK-------------------------GHGKAVDWWTMGVLLYEFIAGYPPFF----DDT 219
Query: 607 ALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
I +I G+ F W A++L K LL + +R+
Sbjct: 220 PFRIYEKILAGRLKF--PNW--FDGRARDLVKGLLQTDHTKRL 258
Score = 61.0 bits (148), Expect = 1e-09
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
Y +IL P D + LL D +RLG + ++K HP+F+ +WD L
Sbjct: 224 YEKILAGRLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGANWDKLY 283
Query: 323 TKRIPAPFVPKISNELDVSNF 343
+ PAP ++ + D SNF
Sbjct: 284 ARYYPAPIPVRVKSPGDTSNF 304
Score = 59.4 bits (144), Expect = 3e-09
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y +LE + GGEL +R+ GR F + A +LV A ++HS+ +++RDLKPENLLL
Sbjct: 94 YFLLEFVVGGELFTHLRKAGR--FPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLL 151
Query: 956 SGISGNLIKI 965
G+ +K+
Sbjct: 152 DN-KGH-VKV 159
Score = 36.3 bits (84), Expect = 0.062
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 33/105 (31%)
Query: 117 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNICRRCV 176
D + LG GS+ R K TG+ YA+K + ++ EI ++ Q H
Sbjct: 19 DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKR-----EILKMKQVQ-HVA-----Q 67
Query: 177 EKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDE 221
EKS E + HP IVN+ C FQDE
Sbjct: 68 EKSILMELS----------------------HPFIVNMMCSFQDE 90
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 149 bits (379), Expect = 2e-40
Identities = 78/274 (28%), Positives = 127/274 (46%), Gaps = 44/274 (16%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISR-KIDCSEEINL----LRACQG--HPNIVNLH 437
++G G++ ++ T + +A+K +++ K + R Q HP +VNL
Sbjct: 7 VIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLW 66
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 497
FQDE + YLV++LL GG+L + QK + F+E + + ++V A+ ++HS+G++HR
Sbjct: 67 YSFQDEENMYLVVDLLLGGDLRYHLSQKVK--FSEEQVKFWICEIVLALEYLHSKGIIHR 124
Query: 498 DLKPENLLFSDPAGDNIKVVDFGFACL--KRESLHTPCFTLQYAAPEVLRQDKSGYDENC 555
D+KP+N+L D G ++ + DF A + T Y APEVL
Sbjct: 125 DIKPDNILL-DEQG-HVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLC---------- 172
Query: 556 DLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIK 615
+ GY D WSLGV Y L G+ P+ SR I A+ +
Sbjct: 173 ----------------RQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQ-IRAKQE 215
Query: 616 EGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
D +T S+EA + LL +P +R+
Sbjct: 216 TA----DVLYPATWSTEAIDAINKLLERDPQKRL 245
Score = 64.6 bits (158), Expect = 2e-11
Identities = 25/60 (41%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV++LL GG+L + QK + F+E + + ++V A+ ++HS+G++HRD+KP+N+LL
Sbjct: 76 YLVVDLLLGGDLRYHLSQKVK--FSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILL 133
Score = 41.5 bits (98), Expect = 0.001
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 262 QYRRILKT-EPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
Q R +T + P S + D I++LL +DP++RLG + ++LK HP+F
Sbjct: 209 QIRAKQETADVLYPATWSTEAIDAINKLLERDPQKRLGD---NLKDLKNHPYF 258
Score = 36.1 bits (84), Expect = 0.062
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 177 EKSTGQEYAVKIISR-KIDCSEEINL----LRACQG--HPNIVNLHCVFQDE 221
++ T + +A+K +++ K + R Q HP +VNL FQDE
Sbjct: 21 KRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDE 72
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 152 bits (384), Expect = 5e-40
Identities = 105/405 (25%), Positives = 169/405 (41%), Gaps = 51/405 (12%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKID--------CSEEINLLRACQGHPNIVNLH 437
LG+GS+ ++ + A+K++++K++ EI +L + PNIV L+
Sbjct: 8 LGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLY 64
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKGRCG-FTENEASRIMRQLVAAVHFMHSRGVVH 496
FQDE YLV+E + GG L D +++ GR G +E+EA I+ Q+++A+ ++HS+G++H
Sbjct: 65 DFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIH 124
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRES---------LHTPCFTLQYAAPEVLRQD 547
RD+KPEN+L D G +K++DFG A L + T T Y APEVL
Sbjct: 125 RDIKPENILL-DRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGL 183
Query: 548 KSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSA 607
Y + D+WSLG+ LY +L G PF +
Sbjct: 184 SLAY-----------------------ASSSSDIWSLGITLYELLTGLPPFEGEKNSSAT 220
Query: 608 LSIMARIKEGQFNFDAEAWS-----TVSSEAKELTKSLLTVNPAQRIRMMRVKLTFHAFH 662
+ I E A S +S A +L K LL +P R+ L+
Sbjct: 221 SQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSS-DLSHDLLA 279
Query: 663 QAQKEGFRLQDVTSAKLAQRRKNKNVSNDNSRSFSSTSSSLSSSSSGTSSLKTPCSSTQP 722
+ + L D+ + + + + S S ++S S
Sbjct: 280 HLKLKESDLSDLLKPDDSAPLRLSLPPSLEALISSLNSLAISGSDLKLDDSNFSKELAPN 339
Query: 723 SVPSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTS 767
V S P + S+ + + ++ S S SSSS S
Sbjct: 340 GVSSSPHNSSSLLLSTASSKRSSLPKISARSSPSSLSSSSRQQAS 384
Score = 65.5 bits (158), Expect = 4e-11
Identities = 31/76 (40%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 891 YNVHTYLVLELLKGGELLDRIRQKGRCG-FTENEASRIMRQLVAAVHFMHSRGVVHRDLK 949
YLV+E + GG L D +++ GR G +E+EA I+ Q+++A+ ++HS+G++HRD+K
Sbjct: 69 DEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIK 128
Query: 950 PENLLLSGISGNLIKI 965
PEN+LL G ++K+
Sbjct: 129 PENILLD-RDGRVVKL 143
Score = 40.1 bits (92), Expect = 0.004
Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 1/110 (0%)
Query: 268 KTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIP 327
P PE +S +D + +LL KDP+ RL + +L H D DL K
Sbjct: 238 PLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLKESDLSDLL-KPDD 296
Query: 328 APFVPKISNELDVSNFSDEFTKMIPADSPAIVPPNFDKIFKGSLFFEQYD 377
+ + + S + I + NF K +
Sbjct: 297 SAPLRLSLPPSLEALISSLNSLAISGSDLKLDDSNFSKELAPNGVSSSPH 346
Score = 33.2 bits (74), Expect = 0.75
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 21/97 (21%)
Query: 182 QEYAVKIISRKID--------CSEEINLLRACQGHPNIVNLHCVFQD--------EVIDW 225
+ A+K++++K++ EI +L + PNIV L+ FQD E +D
Sbjct: 23 KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDG 82
Query: 226 DDFSRGIE----CVFFSSSLIIFFII-LSFTLSFIHD 257
++ S S +F + + L ++H
Sbjct: 83 GSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS 119
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase
Cdc42. NDR and NDR-like kinases contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. Proteins in this subfamily are involved in
regulating many cellular functions including
contraction, motility, division, proliferation,
apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 148 bits (377), Expect = 3e-39
Identities = 94/324 (29%), Positives = 135/324 (41%), Gaps = 79/324 (24%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDC--SEEINLLRA-----CQGH- 430
D + ++G G++ +K TGQ YA+K++ RK D +I +RA
Sbjct: 2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVL-RKSDMIKRNQIAHVRAERDILADADS 60
Query: 431 PNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
P IV L+ FQDE H YLV+E + GG+L++ + +K F E A + +LV A+ +H
Sbjct: 61 PWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRKDV--FPEETARFYIAELVLALDSVH 118
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA---------CLKRESLHTPCF------- 534
G +HRD+KP+N+L D G +IK+ DFG H F
Sbjct: 119 KLGFIHRDIKPDNILI-DADG-HIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVR 176
Query: 535 ----------------TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDEN 578
T Y APEVLR Y
Sbjct: 177 RRDHKQRRVRANSTVGTPDYIAPEVLRGT--------------------------PYGLE 210
Query: 579 CDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTK 638
CD WSLGVILY ML G PF++ + ++ I+ + +F D VS EA +L
Sbjct: 211 CDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPDPP----VSPEAIDLIC 266
Query: 639 SLLTVNPAQRIRMMRVK-LTFHAF 661
LL R+ + + H F
Sbjct: 267 RLLC---DPEDRLGSFEEIKSHPF 287
Score = 85.0 bits (211), Expect = 2e-17
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 231 GIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILKTE-----PPIPEDLSPDVADFI 285
G+EC ++S +I++ ++ F F D Y +I+ + PP P +SP+ D I
Sbjct: 208 GLECDWWSLGVILYEMLYGFP-PFYSDTLQETYNKIINWKESLRFPPDP-PVSPEAIDLI 265
Query: 286 SRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDVSNFSD 345
RLL DP RLG EE+K HPFF IDW++L + PFVP++S+ LD SNF D
Sbjct: 266 CRLLC-DPEDRLG----SFEEIKSHPFFKGIDWENL--RETKPPFVPELSSPLDTSNFDD 318
Query: 346 -EFTKMIPADSPAIVPPNFDK---IFKGSLF 372
E K + F G +
Sbjct: 319 FEDDKDLSDYLSQNSKKLNKGKQLAFVGFTY 349
Score = 59.6 bits (145), Expect = 3e-09
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
H YLV+E + GG+L++ + +K F E A + +LV A+ +H G +HRD+KP+N+
Sbjct: 75 HLYLVMEYMPGGDLMNLLIRKDV--FPEETARFYIAELVLALDSVHKLGFIHRDIKPDNI 132
Query: 954 LLSGISGNLIKI 965
L+ G+ IK+
Sbjct: 133 LI-DADGH-IKL 142
Score = 33.4 bits (77), Expect = 0.48
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 33/105 (31%)
Query: 117 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNICRRCV 176
D + ++G G++ +K TGQ YA+K++ + +++ Q V
Sbjct: 2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSD-------MIKRNQ------IAHV 48
Query: 177 EKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDE 221
E ++L P IV L+ FQDE
Sbjct: 49 R-------------------AERDILADADS-PWIVKLYYSFQDE 73
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 143 bits (362), Expect = 3e-38
Identities = 67/272 (24%), Positives = 122/272 (44%), Gaps = 46/272 (16%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS-----EEINLLRACQGHPNIVNLHCVF 440
+G G + + K TG+E A+K+I + EI +L+ C+ HPNIV + +
Sbjct: 8 IGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCK-HPNIVKYYGSY 66
Query: 441 QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 500
+ ++V+E GG L D ++ + TE++ + + ++L+ + ++HS G++HRD+K
Sbjct: 67 LKKDELWIVMEFCSGGSLKDLLKSTNQT-LTESQIAYVCKELLKGLEYLHSNGIIHRDIK 125
Query: 501 PENLLFSDPAGDNIKVVDFGFA--CLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLW 558
N+L + +K++DFG + ++ +T T + APEV+
Sbjct: 126 AANILLTSDGE--VKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGK----------- 172
Query: 559 SLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARI-KEG 617
YD D+WSLG+ + G+ P+ + + + +I G
Sbjct: 173 ---------------PYDYKADIWSLGITAIELAEGKPPYS----ELPPMKALFKIATNG 213
Query: 618 QFNF-DAEAWSTVSSEAKELTKSLLTVNPAQR 648
+ E WS E K+ K L NP +R
Sbjct: 214 PPGLRNPEKWSD---EFKDFLKKCLQKNPEKR 242
Score = 59.5 bits (145), Expect = 1e-09
Identities = 19/61 (31%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V+E GG L D ++ + TE++ + + ++L+ + ++HS G++HRD+K N+LL
Sbjct: 73 WIVMEFCSGGSLKDLLKSTNQT-LTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILL 131
Query: 956 S 956
+
Sbjct: 132 T 132
Score = 40.7 bits (96), Expect = 0.002
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 272 PIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
PE S + DF+ + L K+P +R AE+L +HPF
Sbjct: 218 RNPEKWSDEFKDFLKKCLQKNPEKR-----PTAEQLLKHPF 253
Score = 38.0 bits (89), Expect = 0.014
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 178 KSTGQEYAVKIISRKIDCS-----EEINLLRACQGHPNIVNLHCVFQDE 221
K TG+E A+K+I + EI +L+ C+ HPNIV + + +
Sbjct: 22 KRTGKEVAIKVIKLESKEKKEKIINEIQILKKCK-HPNIVKYYGSYLKK 69
Score = 34.5 bits (80), Expect = 0.20
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS-----EEINLLRACQGHPNI 171
+G G + + K TG+E A+K+I + EI +L+ C+ HPNI
Sbjct: 8 IGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCK-HPNI 59
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 142 bits (361), Expect = 5e-38
Identities = 74/280 (26%), Positives = 123/280 (43%), Gaps = 54/280 (19%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKII------SRKIDC-SEEINLLRACQGHPNIVN-L 436
+LG GS+ ++K TG+ AVK + +++ EI +L + Q HPNIV
Sbjct: 7 LLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQ-HPNIVRYY 65
Query: 437 HCVFQDEVHTY-LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
+E +T + LE + GG L +++ G+ E + RQ++ + ++HS G+V
Sbjct: 66 GSERDEEKNTLNIFLEYVSGGSLSSLLKKFGK--LPEPVIRKYTRQILEGLAYLHSNGIV 123
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKR-------ESLHTPCFTLQYAAPEVLRQDK 548
HRD+K N+L + +K+ DFG C KR E + T + APEV+R +
Sbjct: 124 HRDIKGANILVD--SDGVVKLADFG--CAKRLGDIETGEGTGSVRGTPYWMAPEVIRGE- 178
Query: 549 SGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSAL 608
Y D+WSLG + M G+ P+ S + +
Sbjct: 179 -------------------------EYGRAADIWSLGCTVIEMATGKPPW---SELGNPM 210
Query: 609 SIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+ + +I G E +S EAK+ + L +P +R
Sbjct: 211 AALYKI--GSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKR 248
Score = 69.5 bits (171), Expect = 6e-13
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 888 RSRYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 947
R + LE + GG L +++ G+ E + RQ++ + ++HS G+VHRD
Sbjct: 69 RDEEKNTLNIFLEYVSGGSLSSLLKKFGK--LPEPVIRKYTRQILEGLAYLHSNGIVHRD 126
Query: 948 LKPENLLLSGISGNLIKI 965
+K N+L+ G +K+
Sbjct: 127 IKGANILVDS-DGV-VKL 142
Score = 52.9 bits (128), Expect = 2e-07
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 259 YHIQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
Y I P IPE LS + DF+ + L +DP++R A+EL +HPF
Sbjct: 214 YKIGS---SGEPPEIPEHLSEEAKDFLRKCLRRDPKKR-----PTADELLQHPFL 260
Score = 41.0 bits (97), Expect = 0.002
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 123 ILGDGSYSVCRRCVEKSTGQEYAVKII------SRKIDC-SEEINLLRACQGHPNICR 173
+LG GS+ ++K TG+ AVK + +++ EI +L + Q HPNI R
Sbjct: 7 LLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQ-HPNIVR 63
Score = 33.3 bits (77), Expect = 0.54
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 174 RCVEKSTGQEYAVKII------SRKIDC-SEEINLLRACQGHPNIVN-LHCVFQDE 221
++K TG+ AVK + +++ EI +L + Q HPNIV +E
Sbjct: 18 LALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQ-HPNIVRYYGSERDEE 72
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 142 bits (361), Expect = 5e-38
Identities = 80/268 (29%), Positives = 120/268 (44%), Gaps = 56/268 (20%)
Query: 400 KSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNLHCVFQDEVHTYLVLE 451
KSTG YA+K+I + + E ++L Q P +V L+ FQ + + YLV+E
Sbjct: 15 KSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQ-SPYVVKLYYSFQGKKNLYLVME 73
Query: 452 LLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAG 511
L GG+L + G E+ A + ++V A+ ++HS G++HRDLKP+N+L D G
Sbjct: 74 YLPGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILI-DSNG 130
Query: 512 DNIKVVDFGF--ACLKRESLHTP---------CFTLQYAAPEVLRQDKSGYDENCDLWSL 560
++K+ DFG L R ++ T Y APEV+
Sbjct: 131 -HLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVIL--------------- 174
Query: 561 GVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIKEGQFN 620
G+ + D WSLG ILY L G PFH ++ I I G+
Sbjct: 175 -----------GQGHSKTVDWWSLGCILYEFLVGIPPFH----GETPEEIFQNILNGKIE 219
Query: 621 FDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+ + VS EA +L LL +P +R
Sbjct: 220 WPEDV--EVSDEAIDLISKLLVPDPEKR 245
Score = 63.4 bits (155), Expect = 7e-11
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV+E L GG+L + G E+ A + ++V A+ ++HS G++HRDLKP+N+L+
Sbjct: 69 YLVMEYLPGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILI 126
Query: 956 SG 957
Sbjct: 127 DS 128
Score = 61.9 bits (151), Expect = 3e-10
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 260 HIQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDW 318
+I +I E P ++S + D IS+LLV DP +RLG EE+K HPFF IDW
Sbjct: 212 NILNGKI---EWPEDVEVSDEAIDLISKLLVPDPEKRLGAK--SIEEIKNHPFFKGIDW 265
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 143 bits (362), Expect = 6e-38
Identities = 84/308 (27%), Positives = 125/308 (40%), Gaps = 79/308 (25%)
Query: 382 KAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE---------EINLLRACQGHPN 432
K LG+G+Y V + +K TG+ A+K I ++D E EI+LL+ + HPN
Sbjct: 3 KLEKLGEGTYGVVYKARDKKTGEIVALKKI--RLDNEEEGIPSTALREISLLKELK-HPN 59
Query: 433 IVNLHCVFQDEVHTYLVLEL----LKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHF 488
IV L V E YLV E LK LD+ + N IM QL+ + +
Sbjct: 60 IVKLLDVIHTERKLYLVFEYCDMDLKK--YLDKRPGP----LSPNLIKSIMYQLLRGLAY 113
Query: 489 MHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRE-SLHTPCF-----TLQYAAPE 542
HS ++HRDLKP+N+L + +K+ DFG A R + + TL Y APE
Sbjct: 114 CHSHRILHRDLKPQNILINR--DGVLKLADFGLA---RAFGIPLRTYTHEVVTLWYRAPE 168
Query: 543 VLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARS 602
+L +S V D+WS+G I M+ G+ F S
Sbjct: 169 ILL--------GSKHYSTAV-----------------DIWSVGCIFAEMITGKPLFPGDS 203
Query: 603 RDDSALSI--------------MARIKEGQFNFD-------AEAWSTVSSEAKELTKSLL 641
D I + ++ + + F + + E +L +L
Sbjct: 204 EIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKML 263
Query: 642 TVNPAQRI 649
NPA+RI
Sbjct: 264 QYNPAKRI 271
Score = 69.4 bits (171), Expect = 8e-13
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 896 YLVLEL----LKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPE 951
YLV E LK LD+ + N IM QL+ + + HS ++HRDLKP+
Sbjct: 74 YLVFEYCDMDLKK--YLDKRPGP----LSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQ 127
Query: 952 NLLLSGISGNLIKI 965
N+L++ ++K+
Sbjct: 128 NILIN--RDGVLKL 139
Score = 43.6 bits (104), Expect = 3e-04
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 40/102 (39%)
Query: 120 KAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEE---INLLRACQGHPNICRRCV 176
K LG+G+Y V + +K TG+ A+K I ++D EE LR
Sbjct: 3 KLEKLGEGTYGVVYKARDKKTGEIVALKKI--RLDNEEEGIPSTALR------------- 47
Query: 177 EKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVF 218
EI+LL+ + HPNIV L V
Sbjct: 48 ---------------------EISLLKELK-HPNIVKLLDVI 67
Score = 35.2 bits (82), Expect = 0.12
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 277 LSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
L P+ D +S++L +P +R + A+E +HP+F
Sbjct: 251 LDPEGIDLLSKMLQYNPAKR-----ISAKEALKHPYF 282
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 139 bits (353), Expect = 1e-36
Identities = 83/283 (29%), Positives = 135/283 (47%), Gaps = 47/283 (16%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKI--ISRKIDCSE------EINLLRACQGH 430
DL++ +G G++ ++ + YA+K+ I I + E +L+ H
Sbjct: 2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVS-H 60
Query: 431 PNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
P I+ L D+ Y+++E + GGEL +R GR F+ + ++V A+ ++H
Sbjct: 61 PFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNSGR--FSNSTGLFYASEIVCALEYLH 118
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSG 550
S+ +V+RDLKPEN+L +IK+ DFGFA R+ T C T +Y APEV+ Q K
Sbjct: 119 SKEIVYRDLKPENILLDKEG--HIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVI-QSK-- 173
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSI 610
G+++ D W+LG+++Y ML G PF DD+ I
Sbjct: 174 -----------------------GHNKAVDWWALGILIYEMLVGYPPF----FDDNPFGI 206
Query: 611 MARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRIRMMR 653
+I G+ F + AK+L K LL V+ +R+ M+
Sbjct: 207 YEKILAGKLEFP----RHLDLYAKDLIKKLLVVDRTRRLGNMK 245
Score = 73.6 bits (181), Expect = 4e-14
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
Y +IL + P L D I +LLV D RRLG + A+++K H +F +DWDD+
Sbjct: 207 YEKILAGKLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWDDVP 266
Query: 323 TKRIPAPFVPKISNELDVSNFSD 345
+++ P VPK+S++ D SNF D
Sbjct: 267 QRKLKPPIVPKVSHDGDTSNFDD 289
Score = 59.4 bits (144), Expect = 2e-09
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
Y+++E + GGEL +R GR F+ + ++V A+ ++HS+ +V+RDLKPEN+
Sbjct: 75 FLYMLMEYVPGGELFSYLRNSGR--FSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENI 132
Query: 954 LLS 956
LL
Sbjct: 133 LLD 135
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 138 bits (348), Expect = 1e-35
Identities = 53/109 (48%), Positives = 73/109 (66%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
RRILK +PP P + P+ D + +LL KDP++RLG G A E+K HPFF +DW+ LA
Sbjct: 221 RRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLDWEALAL 280
Query: 324 KRIPAPFVPKISNELDVSNFSDEFTKMIPADSPAIVPPNFDKIFKGSLF 372
+++ PF P I NELDV NF++EFT + P SPA PP+ ++F+G F
Sbjct: 281 RKVNPPFRPSIRNELDVGNFAEEFTNLEPVYSPAGTPPSGARVFQGYSF 329
Score = 104 bits (260), Expect = 4e-24
Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 49/281 (17%)
Query: 385 ILGDGSYS---VCRRCVEKSTGQEYAVKIISR-----KIDCSE----EINLLRACQGHPN 432
+LG G+Y + R+ TG+ YA+K++ + K E E N+L + P
Sbjct: 7 VLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPF 66
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+V LH FQ E +L+L+ + GGE+ + Q R F+E+E +++ A+ +H
Sbjct: 67 LVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQ--RDNFSEDEVRFYSGEIILALEHLHKL 124
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFG----FACLKRESLHTPCFTLQYAAPEVLRQDK 548
G+V+RD+K EN+L D G ++ + DFG F ++E ++ C T++Y APE++R
Sbjct: 125 GIVYRDIKLENILL-DSEG-HVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIR--- 179
Query: 549 SGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSAL 608
K G+ + D WSLG++++ +L G PF ++
Sbjct: 180 ----------------------GKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQS 217
Query: 609 SIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ RI + F S + EA++L LL +P +R+
Sbjct: 218 EVSRRILKCDPPFP----SFIGPEAQDLLHKLLRKDPKKRL 254
Score = 44.6 bits (105), Expect = 2e-04
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+L+L+ + GGE+ + Q R F+E+E +++ A+ +H G+V+RD+K EN+LL
Sbjct: 81 HLILDYVSGGEMFTHLYQ--RDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILL 138
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 138 bits (348), Expect = 1e-35
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 45/296 (15%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS--------EEINLLRACQGH 430
D D ++G G + + EK+TG YA+K++ + + + EE ++L +
Sbjct: 2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDIL-SISNS 60
Query: 431 PNIVNLHCVFQDEVHTYLVLELLKGGELLDRI-RQKGRCGFTENEASRIMRQLVAAVHFM 489
P I L FQD+ + YLV+E GG+LL + R + + F E+ A + +LV A+H +
Sbjct: 61 PWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQ--FDEDMAQFYLAELVLAIHSV 118
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHT----PCFTLQYAAPEVLR 545
H G VHRD+KPEN+L D G +IK+ DFG A + P T Y APEVL
Sbjct: 119 HQMGYVHRDIKPENVLI-DRTG-HIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVL- 175
Query: 546 QDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDD 605
+G K Y CD WSLGVI Y M+ GR PFH +
Sbjct: 176 TTMNGDG-------------------KGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAK 216
Query: 606 SALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRIRMMRVKLTFHAF 661
+ +IM + +F D + VSS+ +L +SLL +R+ + H F
Sbjct: 217 TYNNIMNFQRFLKFPEDPK----VSSDFLDLIQSLLC-GQKERLGYEGLCC--HPF 265
Score = 59.8 bits (145), Expect = 2e-09
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 231 GIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILKTEPPI--PEDL--SPDVADFIS 286
G+EC ++S +I + +I + F Y I+ + + PED S D D I
Sbjct: 187 GVECDWWSLGVIAYEMIYGRS-PFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQ 245
Query: 287 RLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDVSNFSDE 346
LL + RLG E L HPFF+ IDW+++ + PFVP + ++ D SNF DE
Sbjct: 246 SLLC-GQKERLG-----YEGLCCHPFFSKIDWNNI--RNSLPPFVPTLKSDDDTSNF-DE 296
Query: 347 FTK 349
K
Sbjct: 297 PEK 299
Score = 56.0 bits (135), Expect = 4e-08
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 894 HTYLVLELLKGGELLDRI-RQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPEN 952
+ YLV+E GG+LL + R + + F E+ A + +LV A+H +H G VHRD+KPEN
Sbjct: 75 NLYLVMEYQPGGDLLSLLNRYEDQ--FDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPEN 132
Query: 953 LLL 955
+L+
Sbjct: 133 VLI 135
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 135 bits (341), Expect = 8e-35
Identities = 85/277 (30%), Positives = 127/277 (45%), Gaps = 51/277 (18%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISR-------KIDCSE-EINLLRACQGHPNIVNL 436
+LG GS+ K T + YAVK++ + ++C+ E +L HP + L
Sbjct: 2 VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
H FQ + + V+E + GG+L+ I++ GR F E A ++V + F+H RG+++
Sbjct: 62 HSCFQTKDRLFFVMEYVNGGDLMFHIQRSGR--FDEPRARFYAAEIVLGLQFLHERGIIY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFAC----LKRESLHTPCFTLQYAAPEVLRQDKSGYD 552
RDLK +N+L D G +IK+ DFG C L + T C T Y APE+L
Sbjct: 120 RDLKLDNVLL-DSEG-HIKIADFGM-CKEGILGGVTTSTFCGTPDYIAPEILSYQP---- 172
Query: 553 ENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMA 612
Y D W+LGV+LY ML G+ PF D+ SI+
Sbjct: 173 ----------------------YGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSIL- 209
Query: 613 RIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ +S EAK + KS LT NP +R+
Sbjct: 210 -------EDEVRYPRWLSKEAKSILKSFLTKNPEKRL 239
Score = 99.0 bits (247), Expect = 2e-22
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
++ IL+ E P LS + + L K+P +RLG +++K HPFF IDWD L
Sbjct: 205 FQSILEDEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDWDKLE 264
Query: 323 TKRIPAPFVPKISNELDVSNFSDEFTKMIPADSPA 357
K I PF PKI DVSNF DEFTK P +P
Sbjct: 265 RKEIKPPFKPKIKGRFDVSNFDDEFTKEKPVLTPP 299
Score = 54.3 bits (131), Expect = 1e-07
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+ V+E + GG+L+ I++ GR F E A ++V + F+H RG+++RDLK +N+
Sbjct: 70 RLFFVMEYVNGGDLMFHIQRSGR--FDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNV 127
Query: 954 LLSG 957
LL
Sbjct: 128 LLDS 131
Score = 31.2 bits (71), Expect = 2.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 178 KSTGQEYAVKIISR-------KIDCSE-EINLLRACQGHPNIVNLHCVFQ 219
K T + YAVK++ + ++C+ E +L HP + LH FQ
Sbjct: 17 KGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQ 66
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 134 bits (339), Expect = 9e-35
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKI----DCSE--EINLLRACQGHPNIVNLHCV 439
LGDG++ K TG+ A+K + +K +C E+ LR HPNIV L V
Sbjct: 7 LGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEV 66
Query: 440 FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDL 499
F++ Y V E ++G L ++ + F+E+ I+ Q++ + +H G HRDL
Sbjct: 67 FRENDELYFVFEYMEG-NLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDL 125
Query: 500 KPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQ-----YAAPEVLRQDKSGYDEN 554
KPENLL S P + +K+ DFG A RE P +T Y APE+L + S Y
Sbjct: 126 KPENLLVSGP--EVVKIADFGLA---REIRSRPPYTDYVSTRWYRAPEILLRSTS-YSSP 179
Query: 555 CDLWSLGVILV 565
D+W+LG I+
Sbjct: 180 VDIWALGCIMA 190
Score = 67.2 bits (165), Expect = 5e-12
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 890 RYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 949
R N Y V E ++G L ++ + F+E+ I+ Q++ + +H G HRDLK
Sbjct: 68 RENDELYFVFEYMEG-NLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLK 126
Query: 950 PENLLLSGISGNLIKI 965
PENLL+SG ++KI
Sbjct: 127 PENLLVSG--PEVVKI 140
Score = 42.5 bits (101), Expect = 5e-04
Identities = 48/181 (26%), Positives = 69/181 (38%), Gaps = 64/181 (35%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNICRRCVEKSTGQE 183
LGDG++ K TG+ A+K + +K EE LR
Sbjct: 7 LGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLR-------------------- 46
Query: 184 YAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQD--------EVIDWD--DFSRGIE 233
E+ LR HPNIV L VF++ E ++ + + +
Sbjct: 47 --------------EVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYMEGNLYQLMKDRK 92
Query: 234 CVFFSSSLI--IFFIILSFTLSFIHD--YYHIQYRRILKTEPPIPEDL---SPDV---AD 283
FS S+I I + IL L+ IH ++H R LK PE+L P+V AD
Sbjct: 93 GKPFSESVIRSIIYQILQ-GLAHIHKHGFFH----RDLK-----PENLLVSGPEVVKIAD 142
Query: 284 F 284
F
Sbjct: 143 F 143
Score = 33.3 bits (77), Expect = 0.48
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 278 SPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
SP+ D I +L DP++R A + +HP+F
Sbjct: 253 SPEAIDLIKDMLRWDPKKR-----PTASQALQHPYF 283
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 134 bits (340), Expect = 1e-34
Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 60/282 (21%)
Query: 385 ILGDGSYS---VCRRCVEKSTGQEYAVKIISR-------KIDCSEEINLLRACQGHPNIV 434
+LG GS+ + R+ GQ YA+K++ + ++ E ++L A HP IV
Sbjct: 3 VLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDIL-AEVNHPFIV 61
Query: 435 NLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV 494
LH FQ E YL+L+ L+GG+L R+ ++ FTE + + +L A+ +HS G+
Sbjct: 62 KLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSLGI 119
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTP------CFTLQYAAPEVLRQDK 548
++RDLKPEN+L D G +IK+ DFG L +ES+ C T++Y APEV+
Sbjct: 120 IYRDLKPENILL-DEEG-HIKLTDFG---LSKESIDHEKKAYSFCGTVEYMAPEVV---- 170
Query: 549 SGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSAL 608
++ G+ ++ D WS GV+++ ML G +PF + R ++
Sbjct: 171 ----------------------NRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMT 208
Query: 609 SIM-ARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
I+ A++ QF +S EA+ L ++L NPA R+
Sbjct: 209 MILKAKLGMPQF---------LSPEAQSLLRALFKRNPANRL 241
Score = 93.7 bits (233), Expect = 1e-20
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 266 ILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKR 325
ILK + +P+ LSP+ + L ++P RLG G EE+KRHPFF+ IDW+ L +
Sbjct: 210 ILKAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTIDWNKLYRRE 269
Query: 326 IPAPFVPKISNELDVSNFSDEFTKMIPADSPAIVP-PNFDKIFKGSLF 372
I PF P + D F EFT P DSP I P N ++F+G F
Sbjct: 270 IKPPFKPAVGRPDDTFYFDPEFTSRTPKDSPGIPPSANAHQLFRGFSF 317
Score = 57.1 bits (138), Expect = 2e-08
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 885 FVNRSRYNVHT----YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS 940
F+ + Y T YL+L+ L+GG+L R+ ++ FTE + + +L A+ +HS
Sbjct: 59 FIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHS 116
Query: 941 RGVVHRDLKPENLLL 955
G+++RDLKPEN+LL
Sbjct: 117 LGIIYRDLKPENILL 131
Score = 30.9 bits (70), Expect = 3.6
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 20/115 (17%)
Query: 173 RRCVEKSTGQEYAVKIISR-------KIDCSEEINLLRACQGHPNIVNLHCVFQDE---- 221
R+ GQ YA+K++ + ++ E ++L A HP IV LH FQ E
Sbjct: 16 RKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDIL-AEVNHPFIVKLHYAFQTEGKLY 74
Query: 222 -VIDW----DDFSRGIECVFFSSSLIIFFII-LSFTLSFIHDYYHIQYRRILKTE 270
++D+ D F+R + V F+ + F++ L+ L +H I YR LK E
Sbjct: 75 LILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHS-LGIIYRD-LKPE 127
>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein
Serine/Threonine Kinase, 70 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 70 kDa
ribosomal protein S6 kinase (p70S6K) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The p70S6K subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. p70S6K (or S6K)
contains only one catalytic kinase domain, unlike p90
ribosomal S6 kinases (RSKs). It acts as a downstream
effector of the STK mTOR (mammalian Target of Rapamycin)
and plays a role in the regulation of the translation
machinery during protein synthesis. p70S6K also plays a
pivotal role in regulating cell size and glucose
homeostasis. Its targets include S6, the translation
initiation factor eIF3, and the insulin receptor
substrate IRS-1, among others. Mammals contain two
isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta).
Length = 323
Score = 134 bits (338), Expect = 2e-34
Identities = 90/283 (31%), Positives = 141/283 (49%), Gaps = 60/283 (21%)
Query: 385 ILGDGSYS---VCRRCVEKSTGQEYAVK------IISRKIDCSE---EINLLRACQGHPN 432
+LG G Y R+ TG+ +A+K I+ + D + E N+L A + HP
Sbjct: 3 VLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVK-HPF 61
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
IV+L FQ YL+LE L GGEL + ++G F E+ A + ++ A+ +H +
Sbjct: 62 IVDLIYAFQTGGKLYLILEYLSGGELFMHLEREGI--FMEDTACFYLSEISLALEHLHQQ 119
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL------HTPCFTLQYAAPEVLRQ 546
G+++RDLKPEN+L A ++K+ DFG L +ES+ HT C T++Y APE+L
Sbjct: 120 GIIYRDLKPENILLD--AQGHVKLTDFG---LCKESIHEGTVTHTFCGTIEYMAPEILM- 173
Query: 547 DKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDS 606
+SG+ + D WSLG ++Y ML G PF A +R +
Sbjct: 174 -------------------------RSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKT 208
Query: 607 ALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ +I +G+ N ++ EA++L K LL NP+ R+
Sbjct: 209 ----IDKILKGKLNLPP----YLTPEARDLLKKLLKRNPSSRL 243
Score = 109 bits (273), Expect = 8e-26
Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 265 RILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATK 324
+ILK + +P L+P+ D + +LL ++P RLG G DA E++ HPFF ++WDDL +
Sbjct: 211 KILKGKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHVNWDDLLAR 270
Query: 325 RIPAPFVPKISNELDVSNFSDEFTKMIPADSP--AIVPPNFDKIFKG 369
++ PF P + +E DVS F +FT+ P DSP + + + ++IF G
Sbjct: 271 KVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQIFLG 317
Score = 58.7 bits (142), Expect = 5e-09
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YL+LE L GGEL + ++G F E+ A + ++ A+ +H +G+++RDLKPEN+LL
Sbjct: 76 YLILEYLSGGELFMHLEREGI--FMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILL 133
Query: 956 S 956
Sbjct: 134 D 134
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include Saccharomyces
cerevisiae Rim15, Schizosaccharomyces pombe cek1, and
similar fungal proteins. They contain a central
catalytic domain, which contains an insert relative to
MAST kinases. In addition, Rim15 contains a C-terminal
signal receiver (REC) domain while cek1 contains an
N-terminal PAS domain. Rim15 (or Rim15p) functions as a
regulator of meiosis. It acts as a downstream effector
of PKA and regulates entry into stationary phase (G0).
Thus, it plays a crucial role in regulating yeast
proliferation, differentiation, and aging. Cek1 may
facilitate progression of mitotic anaphase.
Length = 260
Score = 131 bits (332), Expect = 3e-34
Identities = 82/261 (31%), Positives = 128/261 (49%), Gaps = 47/261 (18%)
Query: 399 EKSTGQEYAVKIISRK-IDCSEEINLLRA------CQGH-PNIVNLHCVFQDEVHTYLVL 450
++STG +A+K++ + + ++ ++A QG P + L+ FQ + + YLV+
Sbjct: 17 KRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVM 76
Query: 451 ELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPA 510
E L GG+ I+ G G E+ A + + ++V V +H RG++HRD+KPENLL D
Sbjct: 77 EYLNGGDCASLIKTLG--GLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLI-DQT 133
Query: 511 GDNIKVVDFGFACLKRESLHTPCF--TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVL 568
G ++K+ DFG L R L F T Y APE + LGV
Sbjct: 134 G-HLKLTDFG---LSRNGLENKKFVGTPDYLAPETI---------------LGV------ 168
Query: 569 RQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWST 628
G D+ D WSLG +++ L G PFHA + D ++ I + N+ E
Sbjct: 169 -----GDDKMSDWWSLGCVIFEFLFGYPPFHAETPD----AVFDNILSRRINWPEEVKEF 219
Query: 629 VSSEAKELTKSLLTVNPAQRI 649
S EA +L LL ++PA+R+
Sbjct: 220 CSPEAVDLINRLLCMDPAKRL 240
Score = 56.7 bits (137), Expect = 1e-08
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV+E L GG+ I+ G G E+ A + + ++V V +H RG++HRD+KPENLL+
Sbjct: 73 YLVMEYLNGGDCASLIKTLG--GLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLI 130
Query: 956 S 956
Sbjct: 131 D 131
Score = 54.8 bits (132), Expect = 5e-08
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 261 IQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWD 319
I RRI E + E SP+ D I+RLL DP +RLG +E+K HPFF I+WD
Sbjct: 205 ILSRRINWPEE-VKEFCSPEAVDLINRLLCMDPAKRLGAN--GYQEIKSHPFFKSINWD 260
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 128 bits (324), Expect = 7e-33
Identities = 82/300 (27%), Positives = 124/300 (41%), Gaps = 62/300 (20%)
Query: 382 KAGILGDGSYSVCRRCVEKSTGQEYAVKIISRK----IDCS---EEINLLRACQGHPNIV 434
K G +G+G+Y V + +K TG+ A+K I + EI LL+ HPNI+
Sbjct: 3 KLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLK-ELNHPNII 61
Query: 435 NLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV 494
L VF+ + YLV E + L ++ + + G E+ + QL+ + F HS G+
Sbjct: 62 KLLDVFRHKGDLYLVFEFMD--TDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGI 119
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGFACLKRES--LHTP-CFTLQYAAPEVLRQDKSGY 551
+HRDLKPENLL + +K+ DFG A +T T Y APE+L DK
Sbjct: 120 LHRDLKPENLLINTE--GVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDK--- 174
Query: 552 DENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDS----- 606
GY D+WS+G I +L R F +S D
Sbjct: 175 ----------------------GYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIF 212
Query: 607 ------ALSIMARIKEGQ----FNFDAEA---WSTV----SSEAKELTKSLLTVNPAQRI 649
+ + F+F +A + S +A +L +L +P +RI
Sbjct: 213 RTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRI 272
Score = 56.2 bits (136), Expect = 2e-08
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 890 RYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 949
R+ YLV E + L ++ + + G E+ + QL+ + F HS G++HRDLK
Sbjct: 68 RHKGDLYLVFEFMD--TDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLK 125
Query: 950 PENLLLSGISGNLIKI 965
PENLL++ ++K+
Sbjct: 126 PENLLINTEG--VLKL 139
Score = 39.2 bits (92), Expect = 0.007
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 34/102 (33%)
Query: 120 KAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNICRRCVEKS 179
K G +G+G+Y V + +K TG+ A+K I + + +G P R
Sbjct: 3 KLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFES----------EGIPKTALR----- 47
Query: 180 TGQEYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDE 221
EI LL+ HPNI+ L VF+ +
Sbjct: 48 ------------------EIKLLK-ELNHPNIIKLLDVFRHK 70
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 126 bits (318), Expect = 2e-32
Identities = 79/273 (28%), Positives = 114/273 (41%), Gaps = 46/273 (16%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKII-------SRKIDCSEEINLLRACQGHPNIVNLHC 438
LG GSY + S Q YA+K + + D EI +L + HPNI++
Sbjct: 8 LGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVN-HPNIISYKE 66
Query: 439 VFQDEVHTYLVLELLKGGELLDRI--RQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
F D +V+E G+L I R+K R E E RI QL+ + +H + ++H
Sbjct: 67 AFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILH 126
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFA-CLKRESLHTPCFTLQYAAPEVLRQDKSGYDENC 555
RDLK N+L A D +K+ D G + LK+ T T Y APEV
Sbjct: 127 RDLKSANILLV--ANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEV------------ 172
Query: 556 DLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIK 615
W Y D+WSLG +LY M PF ARS D + +++
Sbjct: 173 --WK------------GRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQD----LRYKVQ 214
Query: 616 EGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
G++ S + + +S+L V P R
Sbjct: 215 RGKYP---PIPPIYSQDLQNFIRSMLQVKPKLR 244
Score = 51.7 bits (124), Expect = 6e-07
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 896 YLVLELLKGGELLDRI--RQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+V+E G+L I R+K R E E RI QL+ + +H + ++HRDLK N+
Sbjct: 75 CIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANI 134
Query: 954 LLSGISGNLIKI 965
LL + +L+KI
Sbjct: 135 LLV--ANDLVKI 144
Score = 29.3 bits (66), Expect = 7.7
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKII-------SRKIDCSEEINLLRACQGHPNICR 173
LG GSY + S Q YA+K + + D EI +L + HPNI
Sbjct: 8 LGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVN-HPNIIS 63
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 125 bits (315), Expect = 7e-32
Identities = 88/283 (31%), Positives = 131/283 (46%), Gaps = 55/283 (19%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIIS-RKIDCSE------EINLLRACQGHPNIVNLH 437
+G GS+ R+ KS G+ K I + E E+N+LR + HPNIV +
Sbjct: 7 TIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELK-HPNIVRYY 65
Query: 438 CVFQDEVHT--YLVLELLKGGELLDRIR--QKGRCGFTENEASRIMRQLVAAVHFMHSRG 493
D + Y+V+E +GG+L I+ +K R E RI+ QL+ A++ H+R
Sbjct: 66 DRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRS 125
Query: 494 -----VVHRDLKPENLLFSDPAGDNIKVVDFGFA-CLKRESLHTPCF--TLQYAAPEVLR 545
V+HRDLKP N+ A +N+K+ DFG A L +S + T Y +PE L
Sbjct: 126 DPGNTVLHRDLKPANIFLD--ANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLN 183
Query: 546 QDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDD 605
YDE D+WSLG ++Y + PF AR++
Sbjct: 184 HMS--------------------------YDEKSDIWSLGCLIYELCALSPPFTARNQ-- 215
Query: 606 SALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
L + ++IKEG+F SSE E+ KS+L V+P +R
Sbjct: 216 --LQLASKIKEGKFR---RIPYRYSSELNEVIKSMLNVDPDKR 253
Score = 49.6 bits (119), Expect = 3e-06
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 896 YLVLELLKGGELLDRIR--QKGRCGFTENEASRIMRQLVAAVHFMHSRG-----VVHRDL 948
Y+V+E +GG+L I+ +K R E RI+ QL+ A++ H+R V+HRDL
Sbjct: 77 YIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDL 136
Query: 949 KPENLLLSG 957
KP N+ L
Sbjct: 137 KPANIFLDA 145
Score = 38.4 bits (90), Expect = 0.011
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 123 ILGDGSYSVCRRCVEKSTGQEYAVKIIS-RKIDCSE------EINLLRACQGHPNICR 173
+G GS+ R+ KS G+ K I + E E+N+LR + HPNI R
Sbjct: 7 TIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELK-HPNIVR 63
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 124 bits (314), Expect = 2e-31
Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 48/281 (17%)
Query: 385 ILGDGSYS---VCRRCVEKSTGQEYAVKI-----ISRKIDCSE----EINLLRACQGHPN 432
+LG G+Y + R+ G+ YA+K+ I +K +E E +L A + P
Sbjct: 7 VLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPF 66
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+V LH FQ + +L+L+ + GGEL + Q+ FTE+E + ++V A+ +H
Sbjct: 67 LVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREH--FTESEVRVYIAEIVLALDHLHQL 124
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFG----FACLKRESLHTPCFTLQYAAPEVLRQDK 548
G+++RD+K EN+L D G ++ + DFG F + E ++ C T++Y APEV+R
Sbjct: 125 GIIYRDIKLENILL-DSEG-HVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGS 182
Query: 549 SGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSAL 608
G+D+ D W WSLGV+ + +L G PF +S
Sbjct: 183 GGHDKAVD-W-----------------------WSLGVLTFELLTGASPFTVDGEQNSQS 218
Query: 609 SIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
I RI + + F T+S+EA++ + LL +P +R+
Sbjct: 219 EISRRILKSKPPFP----KTMSAEARDFIQKLLEKDPKKRL 255
Score = 109 bits (273), Expect = 4e-26
Identities = 42/69 (60%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
RRILK++PP P+ +S + DFI +LL KDP++RLG A+E+K HPFF IDWDDLA
Sbjct: 222 RRILKSKPPFPKTMSAEARDFIQKLLEKDPKKRLGAN--GADEIKNHPFFQGIDWDDLAA 279
Query: 324 KRIPAPFVP 332
KRIPAPF P
Sbjct: 280 KRIPAPFKP 288
Score = 55.2 bits (133), Expect = 5e-08
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 867 TLFEEQLLGPITRARRRTFVNRSRYNVHT----YLVLELLKGGELLDRIRQKGRCGFTEN 922
T E Q+L RR F+ Y T +L+L+ + GGEL + Q+ FTE+
Sbjct: 51 TRTERQVL---EAVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREH--FTES 105
Query: 923 EASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
E + ++V A+ +H G+++RD+K EN+LL
Sbjct: 106 EVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDS 140
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of fungal proteins
with similarity to the Schizosaccharomyces pombe STK
Sck1. Sck1 plays a role in trehalase activation
triggered by glucose and a nitrogen source. Trehalase
catalyzes the cleavage of the disaccharide trehalose to
glucose. Trehalose, as a carbohydrate reserve and stress
metabolite, plays an important role in the response of
yeast to environmental changes.
Length = 330
Score = 125 bits (314), Expect = 4e-31
Identities = 101/362 (27%), Positives = 159/362 (43%), Gaps = 63/362 (17%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLR--ACQGHPNIVN 435
+G G++ + +K T + YA+K++S+K ++ E N+L P IV
Sbjct: 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVG 60
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
L FQ + YLV + + GGEL ++++GR F+E+ A + +LV A+ +H +V
Sbjct: 61 LKFSFQTDSDLYLVTDYMSGGELFWHLQKEGR--FSEDRAKFYIAELVLALEHLHKYDIV 118
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFA---CLKRESLHTPCFTLQYAAPEVLRQDKSGYD 552
+RDLKPEN+L A +I + DFG + ++ +T C T +Y APEVL +K
Sbjct: 119 YRDLKPENILLD--ATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEK---- 172
Query: 553 ENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMA 612
GY ++ D WSLGV+++ M CG PF+A M
Sbjct: 173 ---------------------GYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQ-----MY 206
Query: 613 R-IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRIRMMR--VKLTFHAFHQAQKEGF 669
R I G+ F +S E ++ K LL NP R+ R V+L H F
Sbjct: 207 RNIAFGKVRFPKN---VLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADID--- 260
Query: 670 RLQDVTSAKLAQRRKNKNVSNDNSRS-----FSSTSSSLSSSSSGTSSLKTPCSSTQPSV 724
D+ S K V +D S F+++S + P +++ P
Sbjct: 261 --WDLLSKKQITPPFKPIVDSDEDVSNFDPEFTNSSLLNAGIVPWEDVPGLPGANSTPLS 318
Query: 725 PS 726
S
Sbjct: 319 SS 320
Score = 82.7 bits (204), Expect = 7e-17
Identities = 43/99 (43%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 263 YRRILKTEPPIPED-LSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDL 321
YR I + P++ LS + F+ LL ++P+ RLG DA ELK HPFF IDWD L
Sbjct: 206 YRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHR-DAVELKEHPFFADIDWDLL 264
Query: 322 ATKRIPAPFVPKISNELDVSNFSDEFTKMIPADSPAIVP 360
+ K+I PF P + ++ DVSNF EFT ++ IVP
Sbjct: 265 SKKQITPPFKPIVDSDEDVSNFDPEFTNSSLLNA-GIVP 302
Score = 53.0 bits (127), Expect = 3e-07
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV + + GGEL ++++GR F+E+ A + +LV A+ +H +V+RDLKPEN+LL
Sbjct: 72 YLVTDYMSGGELFWHLQKEGR--FSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILL 129
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development,
and neurological processes. They are also required for
proper centrosome duplication. Higher eukaryotes contain
two NDR isoforms, NDR1 and NDR2. This subfamily also
contains fungal NDR-like kinases.
Length = 364
Score = 125 bits (317), Expect = 4e-31
Identities = 88/293 (30%), Positives = 140/293 (47%), Gaps = 43/293 (14%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE---------EINLLRACQGHPNIVN 435
++G G++ R +K TG YA+K + RK + E E ++L A +P +V
Sbjct: 8 VIGRGAFGEVRLVQKKDTGHIYAMKKL-RKSEMLEKEQVAHVRAERDIL-AEADNPWVVK 65
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
L+ FQDE + YL++E L GG+++ + +K FTE E + + + A+ +H G +
Sbjct: 66 LYYSFQDENYLYLIMEYLPGGDMMTLLMKKDT--FTEEETRFYIAETILAIDSIHKLGYI 123
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF------TLQYAAPEVLRQDKS 549
HRD+KP+NLL D G +IK+ DFG C + H F L + + + S
Sbjct: 124 HRDIKPDNLLL-DAKG-HIKLSDFGL-CTGLKKSHRTEFYRILSHALPSNFLDFISKPMS 180
Query: 550 GYDENCDLW----------SLGV---ILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRV 596
+ W ++G I V Q GY++ CD WSLGVI+Y ML G
Sbjct: 181 S-KRKAETWKRNRRALAYSTVGTPDYIAPEVFLQT--GYNKECDWWSLGVIMYEMLVGYP 237
Query: 597 PFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
PF + + ++ I+ + QF + +S EAK+L K L +R+
Sbjct: 238 PFCSDNPQETYRKIINWKETLQFPDEVP----LSPEAKDLIKRLCC-EAERRL 285
Score = 75.5 bits (186), Expect = 2e-14
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 231 GIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRIL--KTEPPIPED--LSPDVADFIS 286
EC ++S +I++ +++ + F D YR+I+ K P++ LSP+ D I
Sbjct: 217 NKECDWWSLGVIMYEMLVGYP-PFCSDNPQETYRKIINWKETLQFPDEVPLSPEAKDLIK 275
Query: 287 RLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDVSNFSDE 346
RL + RRLG E+K HPFF +DW+ + + PAP +P++ + D SNF D+
Sbjct: 276 RLCC-EAERRLGNN--GVNEIKSHPFFKGVDWEHI--RERPAPIIPELKSITDTSNF-DD 329
Query: 347 F 347
F
Sbjct: 330 F 330
Score = 55.1 bits (133), Expect = 9e-08
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YL++E L GG+++ + +K FTE E + + + A+ +H G +HRD+KP+NLLL
Sbjct: 77 YLIMEYLPGGDMMTLLMKKDT--FTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLL 134
Score = 30.8 bits (70), Expect = 3.7
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 173 RRCVEKSTGQEYAVKIISRKIDCSE---------EINLLRACQGHPNIVNLHCVFQDE 221
R +K TG YA+K + RK + E E ++L A +P +V L+ FQDE
Sbjct: 18 RLVQKKDTGHIYAMKKL-RKSEMLEKEQVAHVRAERDIL-AEADNPWVVKLYYSFQDE 73
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 122 bits (308), Expect = 9e-31
Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 23/200 (11%)
Query: 384 GILGDGSYSVCRRCVEKSTGQEYAVKIIS--RKIDCSE-----EINLLRACQGHPNIVNL 436
G +G+G++ + + ++ TG+ A+K ++ R EI L+ACQ HP +V L
Sbjct: 6 GRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQ-HPYVVKL 64
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
VF LV+E + +L + +R + R E + MR L+ V +MH+ G++H
Sbjct: 65 LDVFPHGSGFVLVMEYM-PSDLSEVLRDEER-PLPEAQVKSYMRMLLKGVAYMHANGIMH 122
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACL---KRESLHTP-CFTLQYAAPEVL---RQDKS 549
RDLKP NLL S +K+ DFG A L + L++ T Y APE+L R+
Sbjct: 123 RDLKPANLLISAD--GVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARK--- 177
Query: 550 GYDENCDLWSLGVILVNVLR 569
YD DLW++G I +L
Sbjct: 178 -YDPGVDLWAVGCIFAELLN 196
Score = 66.5 bits (163), Expect = 9e-12
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
LV+E + +L + +R + R E + MR L+ V +MH+ G++HRDLKP NL
Sbjct: 73 GFVLVMEYM-PSDLSEVLRDEER-PLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANL 130
Query: 954 LLS 956
L+S
Sbjct: 131 LIS 133
Score = 36.9 bits (86), Expect = 0.037
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 271 PPIP-EDLSPDVA----DFISRLLVKDPRRRLGGGELDAEELKRHPFFN 314
PIP E++ PD + D + LLV DP +RL A E RHP+F
Sbjct: 243 KPIPLEEIFPDASPEALDLLKGLLVYDPSKRLS-----AAEALRHPYFT 286
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 122 bits (309), Expect = 2e-30
Identities = 87/280 (31%), Positives = 136/280 (48%), Gaps = 58/280 (20%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNL 436
+LG G++ EK+TG+ YA+KI+ +++ ++ E +L+ + HP + L
Sbjct: 2 LLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTR-HPFLTAL 60
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCG-FTENEASRIMRQLVAAVHFMHSRGVV 495
FQ V+E GGEL + R F+E+ A ++V+A+ ++HS VV
Sbjct: 61 KYSFQTHDRLCFVMEYANGGELFFHLS---RERVFSEDRARFYGAEIVSALGYLHSCDVV 117
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL------HTPCFTLQYAAPEVLRQDKS 549
+RDLK ENL+ D G +IK+ DFG L +E + T C T +Y APEVL
Sbjct: 118 YRDLKLENLML-DKDG-HIKITDFG---LCKEGISDGATMKTFCGTPEYLAPEVL----- 167
Query: 550 GYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALS 609
+ + Y D W LGV++Y M+CGR+PF+ ++D L
Sbjct: 168 ---------------------EDNDYGRAVDWWGLGVVMYEMMCGRLPFY--NQDHEKLF 204
Query: 610 IMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ ++E +F T+S EAK L LL +P QR+
Sbjct: 205 ELILMEEIRFP------RTLSPEAKSLLAGLLKKDPKQRL 238
Score = 99.9 bits (249), Expect = 1e-22
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 221 EVIDWDDFSRGIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILKTEPPIPEDLSPD 280
EV++ +D+ R V + ++ + ++ L F + + + IL E P LSP+
Sbjct: 165 EVLEDNDYGR---AVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPE 221
Query: 281 VADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDV 340
++ LL KDP++RLGGG DA+E+ H FF I+W D+ K++ PF P++++E D
Sbjct: 222 AKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASINWQDVVQKKLEPPFKPQVTSETDT 281
Query: 341 SNFSDEFTKMIPADSPAIVPPN 362
F +EFT A S I PP+
Sbjct: 282 RYFDEEFT----AQSITITPPD 299
Score = 49.8 bits (119), Expect = 3e-06
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 867 TLFEEQLLGPITRARRRTFVNRSRYNVHTY----LVLELLKGGELLDRIRQKGRCG-FTE 921
TL E ++L + R F+ +Y+ T+ V+E GGEL + R F+E
Sbjct: 42 TLTESRVL----QNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS---RERVFSE 94
Query: 922 NEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+ A ++V+A+ ++HS VV+RDLK ENL+L
Sbjct: 95 DRARFYGAEIVSALGYLHSCDVVYRDLKLENLML 128
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 121 bits (306), Expect = 2e-30
Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 58/278 (20%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE----EINLLRACQGHPNIVNLHCVFQ 441
+G+G+ + +++TG+E A+K + + E EI +++ C+ HPNIV+ + +
Sbjct: 27 IGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCK-HPNIVDYYDSYL 85
Query: 442 DEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKP 501
++V+E + GG L D I Q E + + + R+++ + ++HS+ V+HRD+K
Sbjct: 86 VGDELWVVMEYMDGGSLTDIITQNFVR-MNEPQIAYVCREVLQGLEYLHSQNVIHRDIKS 144
Query: 502 EN-LLFSDPAGDNIKVVDFGFAC------LKRESL-HTPCFTLQYAAPEVLRQDKSGYDE 553
+N LL D G +K+ DFGFA KR S+ TP + APEV
Sbjct: 145 DNILLSKD--GS-VKLADFGFAAQLTKEKSKRNSVVGTPYWM----APEV---------- 187
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
+ R+D Y D+WSLG++ M G P+ + L +
Sbjct: 188 -------------IKRKD---YGPKVDIWSLGIMCIEMAEGEPPYL----REPPLRALFL 227
Query: 614 I-KEG--QFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
I +G + E W S E K+ L +P +R
Sbjct: 228 ITTKGIPPLK-NPEKW---SPEFKDFLNKCLVKDPEKR 261
Score = 61.8 bits (151), Expect = 4e-10
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 884 TFVNRSRYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV 943
+ + ++V+E + GG L D I Q E + + + R+++ + ++HS+ V
Sbjct: 79 DYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVR-MNEPQIAYVCREVLQGLEYLHSQNV 137
Query: 944 VHRDLKPENLLLS 956
+HRD+K +N+LLS
Sbjct: 138 IHRDIKSDNILLS 150
Score = 44.1 bits (105), Expect = 2e-04
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 271 PPI--PEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFN 314
PP+ PE SP+ DF+++ LVKDP +R AEEL +HPF
Sbjct: 234 PPLKNPEKWSPEFKDFLNKCLVKDPEKR-----PSAEELLQHPFLK 274
Score = 35.3 bits (82), Expect = 0.11
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 174 RCVEKSTGQEYAVKIISRKIDCSE----EINLLRACQGHPNIVNL 214
+ +++TG+E A+K + + E EI +++ C+ HPNIV+
Sbjct: 37 KATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCK-HPNIVDY 80
Score = 33.7 bits (78), Expect = 0.39
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE----EINLLRACQGHPNI 171
+G+G+ + +++TG+E A+K + + E EI +++ C+ HPNI
Sbjct: 27 IGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCK-HPNI 77
>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C eta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), eta isoform, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta
is predominantly expressed in squamous epithelia, where
it plays a crucial role in the signaling of cell-type
specific differentiation. It is also expressed in pro-B
cells and early-stage thymocytes, and acts as a key
regulator in early B-cell development. PKC-eta increases
glioblastoma multiforme (GBM) proliferation and
resistance to radiation, and is being developed as a
therapeutic target for the management of GBM.
Length = 320
Score = 120 bits (302), Expect = 1e-29
Identities = 80/280 (28%), Positives = 133/280 (47%), Gaps = 57/280 (20%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-------DCS-EEINLLRACQGHPNIVNL 436
+LG GS+ K +G+ YAVK++ + + +C+ E +L + HP + L
Sbjct: 2 VLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
+C FQ + V+E + GG+L+ I++ R F E A ++ +A+ F+H +G+++
Sbjct: 62 YCCFQTPDRLFFVMEFVNGGDLMFHIQKSRR--FDEARARFYAAEITSALMFLHDKGIIY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRESLH------TPCFTLQYAAPEVLRQDKSG 550
RDLK +N+L D G + K+ DFG +E + T C T Y APE+L++ G
Sbjct: 120 RDLKLDNVLL-DHEG-HCKLADFGMC---KEGIFNGKTTSTFCGTPDYIAPEILQEMLYG 174
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSI 610
D W++GV+LY MLCG PF A + DD +I
Sbjct: 175 PS--------------------------VDWWAMGVLLYEMLCGHAPFEAENEDDLFEAI 208
Query: 611 MARIKEGQFNFDAEAWST-VSSEAKELTKSLLTVNPAQRI 649
+ D + T +S +A ++ K+ +T NP R+
Sbjct: 209 LN---------DEVVYPTWLSQDAVDILKAFMTKNPTMRL 239
Score = 75.7 bits (186), Expect = 1e-14
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEE-LKRHPFFNVIDWDDL 321
+ IL E P LS D D + + K+P RLG L EE + RHPFF +DW+ L
Sbjct: 205 FEAILNDEVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWEKL 264
Query: 322 ATKRIPAPFVPKISNELDVSNFSDEFTKMIPADSP---AIVPP 361
++I PF P+I + DVSNF +F K P +P +++P
Sbjct: 265 NRRQIEPPFRPRIKSREDVSNFDPDFIKEDPVLTPIEESLLPM 307
Score = 51.1 bits (122), Expect = 1e-06
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 867 TLFEEQLLGPITRARRRTFVNRSRYNVHT----YLVLELLKGGELLDRIRQKGRCGFTEN 922
T+ E+++L + AR F+ + T + V+E + GG+L+ I++ R F E
Sbjct: 42 TMTEKRIL---SLARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKSRR--FDEA 96
Query: 923 EASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
A ++ +A+ F+H +G+++RDLK +N+LL
Sbjct: 97 RARFYAAEITSALMFLHDKGIIYRDLKLDNVLL 129
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 119 bits (301), Expect = 1e-29
Identities = 81/278 (29%), Positives = 126/278 (45%), Gaps = 49/278 (17%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK-------IDCSE-EINLLRACQGHPNIVNL 436
+LG GS+ K T + +A+K + + ++C+ E +L HP + +L
Sbjct: 2 VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
C FQ + H + V+E L GG+L+ I+ GR F E A +++ + F+H +G+++
Sbjct: 62 FCTFQTKEHLFFVMEYLNGGDLMFHIQSSGR--FDEARARFYAAEIICGLQFLHKKGIIY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFA---CLKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLK +N+L D G +IK+ DFG T C T Y APE+L+ K
Sbjct: 120 RDLKLDNVLL-DKDG-HIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQK----- 172
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
Y+E+ D WS GV+LY ML G+ PFH D+ SI
Sbjct: 173 ---------------------YNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSI--L 209
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRIRM 651
F +S EAK+ L +P +R+ +
Sbjct: 210 NDRPHFP------RWISKEAKDCLSKLFERDPTKRLGV 241
Score = 78.3 bits (193), Expect = 2e-15
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 266 ILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKR 325
IL P P +S + D +S+L +DP +RLG ++++HPFF IDW+ L +
Sbjct: 208 ILNDRPHFPRWISKEAKDCLSKLFERDPTKRLGV----DGDIRQHPFFRGIDWERLEKRE 263
Query: 326 IPAPFVPKISNELDVSNFSDEFTKMIPADSPA 357
IP PF PK+ + D SNF EFT SP
Sbjct: 264 IPPPFKPKVKSPSDASNFDREFTNEKVRLSPV 295
Score = 54.8 bits (132), Expect = 7e-08
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
H + V+E L GG+L+ I+ GR F E A +++ + F+H +G+++RDLK +N+
Sbjct: 70 HLFFVMEYLNGGDLMFHIQSSGR--FDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNV 127
Query: 954 LL 955
LL
Sbjct: 128 LL 129
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta.
PKC-epsilon has been shown to behave as an oncoprotein.
Its overexpression contributes to neoplastic
transformation depending on the cell type. It
contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role
in tumor invasion and metastasis. PKC-epsilon has also
been found to confer cardioprotection against ischemia
and reperfusion-mediated damage. Other cellular
functions include the regulation of gene expression,
cell adhesion, and cell motility.
Length = 321
Score = 118 bits (298), Expect = 4e-29
Identities = 80/276 (28%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK-------IDCS-EEINLLRACQGHPNIVNL 436
+LG GS+ K T + YA+K++ + +DC+ E +L HP + L
Sbjct: 2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTAL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
HC FQ + + V+E + GG+L+ +I Q+ R F E + ++ A+ F+H GV++
Sbjct: 62 HCCFQTKDRLFFVMEYVNGGDLMFQI-QRSR-KFDEPRSRFYAAEVTLALMFLHRHGVIY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGF---ACLKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLK +N+L A + K+ DFG L + T C T Y APE+L++ +
Sbjct: 120 RDLKLDNILLD--AEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELE----- 172
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
Y + D W+LGV++Y M+ G+ PF A + DD SI+
Sbjct: 173 ---------------------YGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESIL-- 209
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ D +S EA + K+ +T NP +R+
Sbjct: 210 ------HDDVLYPVWLSKEAVSILKAFMTKNPNKRL 239
Score = 73.3 bits (180), Expect = 8e-14
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLG--GGELDAEELKRHPFFNVIDWDD 320
+ IL + P LS + + + K+P +RLG + + +K+HPFF IDW
Sbjct: 205 FESILHDDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEIDWVL 264
Query: 321 LATKRIPAPFVPKISNELDVSNFSDEFTK----MIPADSPAIVPPNFDKIFKGSLFF 373
L ++I PF PKI + DV+NF +FTK + P D I N ++ F+G FF
Sbjct: 265 LEQRKIKPPFKPKIKTKRDVNNFDQDFTKEEPVLTPVDPAVIKQINQEE-FRGFSFF 320
Score = 47.1 bits (112), Expect = 2e-05
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+ V+E + GG+L+ +I Q+ R F E + ++ A+ F+H GV++RDLK +N+LL
Sbjct: 72 FFVMEYVNGGDLMFQI-QRSR-KFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILL 129
Score = 30.6 bits (69), Expect = 3.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 178 KSTGQEYAVKIISRK-------IDCS-EEINLLRACQGHPNIVNLHCVFQ 219
K T + YA+K++ + +DC+ E +L HP + LHC FQ
Sbjct: 17 KGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQ 66
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 118 bits (298), Expect = 5e-29
Identities = 75/312 (24%), Positives = 124/312 (39%), Gaps = 75/312 (24%)
Query: 378 MDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRK-IDCSEEINLLRACQG------H 430
K +LG G K TG+ +A+K++ +K + ++ + Q H
Sbjct: 1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDH 60
Query: 431 PNIVNLHCVFQDEVHTYLVLELLKGGELLD-RIRQKGRCGFTENEASRIMRQLVAAVHFM 489
P + L+ FQ E + LV++ GGEL RQ G+C +E A +++ A+ ++
Sbjct: 61 PFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKC-LSEEVARFYAAEVLLALEYL 119
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTL------------- 536
H G+V+RDLKPEN+L +I + DF + L
Sbjct: 120 HLLGIVYRDLKPENILLH--ESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIP 177
Query: 537 -------------------QYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDE 577
+Y APEV+ G+
Sbjct: 178 SETFSEEPSFRSNSFVGTEEYIAPEVIS--------------------------GDGHGS 211
Query: 578 NCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELT 637
D W+LG++LY ML G PF +RD++ + I + + F VSS A++L
Sbjct: 212 AVDWWTLGILLYEMLYGTTPFKGSNRDET----FSNILKKEVTFPGSP--PVSSSARDLI 265
Query: 638 KSLLTVNPAQRI 649
+ LL +P++R+
Sbjct: 266 RKLLVKDPSKRL 277
Score = 63.1 bits (154), Expect = 2e-10
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 263 YRRILKTEPPIPED--LSPDVADFISRLLVKDPRRRLG--GGELDAEELKRHPFFNVIDW 318
+ ILK E P +S D I +LLVKDP +RLG G A E+K+HPFF ++W
Sbjct: 241 FSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRG---AAEIKQHPFFRGVNW 297
Query: 319 DDLATKRIPAPFVPK 333
+ + P +P+
Sbjct: 298 ALI--RHTTPPIIPR 310
Score = 56.9 bits (138), Expect = 2e-08
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 894 HTYLVLELLKGGELLD-RIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPEN 952
+ LV++ GGEL RQ G+C +E A +++ A+ ++H G+V+RDLKPEN
Sbjct: 75 YLCLVMDYCPGGELFRLLQRQPGKC-LSEEVARFYAAEVLLALEYLHLLGIVYRDLKPEN 133
Query: 953 LLL 955
+LL
Sbjct: 134 ILL 136
Score = 31.1 bits (71), Expect = 3.0
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 175 CVEKSTGQEYAVKIISRK-IDCSEEINLLRACQG------HPNIVNLHCVFQDE 221
K TG+ +A+K++ +K + ++ + Q HP + L+ FQ E
Sbjct: 20 VRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTE 73
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 116 bits (294), Expect = 5e-29
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 19/198 (9%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE------EINLLRACQGHPN 432
DL++ +LG GS V + K TG+ YA+K I D E+ LR+C+ P
Sbjct: 2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCE-SPY 60
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS- 491
+V + F E +VLE + GG L D +++ G E + I RQ++ + ++H+
Sbjct: 61 VVKCYGAFYKEGEISIVLEYMDGGSLADLLKKVG--KIPEPVLAYIARQILKGLDYLHTK 118
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF----TLQYAAPEVLRQD 547
R ++HRD+KP NLL + G +K+ DFG E+ C T+ Y +PE ++ +
Sbjct: 119 RHIIHRDIKPSNLLINS-KG-EVKIADFG-ISKVLENTLDQCNTFVGTVTYMSPERIQGE 175
Query: 548 KSGYDENCDLWSLGVILV 565
Y D+WSLG+ L+
Sbjct: 176 SYSYA--ADIWSLGLTLL 191
Score = 56.4 bits (137), Expect = 2e-08
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS-RGVVHRDLKPENLL 954
+VLE + GG L D +++ G E + I RQ++ + ++H+ R ++HRD+KP NLL
Sbjct: 75 SIVLEYMDGGSLADLLKKVG--KIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLL 132
Query: 955 LS----------GISGNL 962
++ GIS L
Sbjct: 133 INSKGEVKIADFGISKVL 150
Score = 43.0 bits (102), Expect = 4e-04
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 117 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE------EINLLRACQGHPN 170
DL++ +LG GS V + K TG+ YA+K I D E+ LR+C+ P
Sbjct: 2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCE-SPY 60
Query: 171 I 171
+
Sbjct: 61 V 61
Score = 42.2 bits (100), Expect = 6e-04
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 266 ILKTEPPIPED--LSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVID 317
I PP SP+ DFIS L KDP++R A EL +HPF D
Sbjct: 215 ICDGPPPSLPAEEFSPEFRDFISACLQKDPKKR-----PSAAELLQHPFIKKAD 263
Score = 37.2 bits (87), Expect = 0.026
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 173 RRCVEKSTGQEYAVKIISRKIDCSE------EINLLRACQGHPNIVNLHCVFQDE 221
+ K TG+ YA+K I D E+ LR+C+ P +V + F E
Sbjct: 18 YKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCE-SPYVVKCYGAFYKE 71
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 116 bits (293), Expect = 5e-29
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 26/192 (13%)
Query: 384 GILGDGSY-SVCRRCVEKSTGQEYAVKIISRKIDCSE---EINLLRACQGHPNIVNLHCV 439
LG+GSY SV + + K TGQ A+K++ + D E EI++L+ C P IV +
Sbjct: 9 EKLGEGSYGSVYK-AIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCD-SPYIVKYYGS 66
Query: 440 FQDEVHTYLVLELLKGGELLD--RIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 497
+ ++V+E G + D +I K TE E + I+ Q + + ++HS +HR
Sbjct: 67 YFKNTDLWIVMEYCGAGSVSDIMKITNKT---LTEEEIAAILYQTLKGLEYLHSNKKIHR 123
Query: 498 DLKPENLLFSDPAGDNIKVVDFGFAC------LKRESL-HTPCFTLQYAAPEVLRQDKSG 550
D+K N+L ++ K+ DFG + KR ++ TP + APEV++ + G
Sbjct: 124 DIKAGNILLNEEG--QAKLADFGVSGQLTDTMAKRNTVIGTPF----WMAPEVIQ--EIG 175
Query: 551 YDENCDLWSLGV 562
Y+ D+WSLG+
Sbjct: 176 YNNKADIWSLGI 187
Score = 47.6 bits (114), Expect = 1e-05
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 891 YNVHTYLVLELLKGGELLD--RIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDL 948
N ++V+E G + D +I K TE E + I+ Q + + ++HS +HRD+
Sbjct: 69 KNTDLWIVMEYCGAGSVSDIMKITNKT---LTEEEIAAILYQTLKGLEYLHSNKKIHRDI 125
Query: 949 KPENLLLS----------GISGNLI 963
K N+LL+ G+SG L
Sbjct: 126 KAGNILLNEEGQAKLADFGVSGQLT 150
Score = 45.3 bits (108), Expect = 7e-05
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 122 GILGDGSY-SVCRRCVEKSTGQEYAVKIISRKIDCSE---EINLLRACQGHPNI 171
LG+GSY SV + + K TGQ A+K++ + D E EI++L+ C P I
Sbjct: 9 EKLGEGSYGSVYK-AIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCD-SPYI 60
Score = 43.0 bits (102), Expect = 4e-04
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 258 YYHIQYRRIL---KTEPP----IPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRH 310
Y I R + +PP PE SP+ DF+ + LVKDP R A +L +H
Sbjct: 199 YSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEER-----PSAIQLLQH 253
Query: 311 PFF 313
PF
Sbjct: 254 PFI 256
Score = 36.9 bits (86), Expect = 0.037
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 174 RCVEKSTGQEYAVKIISRKIDCSE---EINLLRACQGHPNIVNLH-CVFQDE 221
+ + K TGQ A+K++ + D E EI++L+ C P IV + F++
Sbjct: 21 KAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCD-SPYIVKYYGSYFKNT 71
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 114 bits (288), Expect = 2e-28
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 19/188 (10%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-------DCSEEINLLRACQGHPNIVNLH 437
++G G++ V + + TG A+K IS + +EI+LL+ + HPNIV
Sbjct: 7 LIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLK-HPNIVKYI 65
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 497
+ Y++LE + G L I++ G E+ + + Q++ + ++H +GV+HR
Sbjct: 66 GSIETSDSLYIILEYAENGSLRQIIKKFGPFP--ESLVAVYVYQVLQGLAYLHEQGVIHR 123
Query: 498 DLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQ----YAAPEVLRQDKSGYDE 553
D+K N+L + +K+ DFG A K + ++ + APEV+ SG
Sbjct: 124 DIKAANILTT--KDGVVKLADFGVA-TKLNDVSKDDASVVGTPYWMAPEVIEM--SGAST 178
Query: 554 NCDLWSLG 561
D+WSLG
Sbjct: 179 ASDIWSLG 186
Score = 56.5 bits (137), Expect = 1e-08
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
Y++LE + G L I++ G E+ + + Q++ + ++H +GV+HRD+K N+
Sbjct: 73 SLYIILEYAENGSLRQIIKKFGPFP--ESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANI 130
Query: 954 LLS 956
L +
Sbjct: 131 LTT 133
Score = 49.6 bits (119), Expect = 3e-06
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 258 YYHIQ-----YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
YY + +R + PP+PE +SP++ DF+ + KDP R A++L +HP+
Sbjct: 199 YYDLNPMAALFRIVQDDHPPLPEGISPELKDFLMQCFQKDPNLR-----PTAKQLLKHPW 253
Query: 313 F 313
Sbjct: 254 I 254
Score = 33.4 bits (77), Expect = 0.46
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 123 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-------DCSEEINLLRACQGHPNICR 173
++G G++ V + + TG A+K IS + +EI+LL+ + HPNI +
Sbjct: 7 LIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLK-HPNIVK 63
Score = 31.8 bits (73), Expect = 1.3
Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 38/121 (31%)
Query: 176 VEKSTGQEYAVKIISRKI-------DCSEEINLLRACQGHPNIVNLHCVFQDEVIDWDDF 228
+ TG A+K IS + +EI+LL+ + HPNIV +
Sbjct: 20 LNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLK-HPNIVKYIGSIETS------- 71
Query: 229 SRGIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILKTEPPIPEDLSPDVADFISRL 288
S II + +L R+I+K P PE L VA ++ ++
Sbjct: 72 ---------DSLYIILEYAENGSL-----------RQIIKKFGPFPESL---VAVYVYQV 108
Query: 289 L 289
L
Sbjct: 109 L 109
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK1 plays a role in the regulation
of translational control and transcriptional activation.
It phosphorylates the transcription factors, CREB and
NFkappaB. It also phosphorylates the nucleosomal
proteins H3 and HMG-14. Increased phosphorylation of
MEK1 is associated with the development of cerebral
ischemic/hypoxic preconditioning.
Length = 290
Score = 115 bits (289), Expect = 3e-28
Identities = 79/281 (28%), Positives = 137/281 (48%), Gaps = 48/281 (17%)
Query: 385 ILGDGSYS---VCRRCVEKSTGQEYAVKI-----ISRKIDCSE----EINLLRACQGHPN 432
+LG G+Y + R+ +G+ YA+K+ I +K +E E +L + P
Sbjct: 7 VLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF 66
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+V LH FQ + +L+L+ + GGEL + Q+ R F E E ++V A+ +H
Sbjct: 67 LVTLHYAFQTDTKLHLILDYINGGELFTHLSQRER--FKEQEVQIYSGEIVLALEHLHKL 124
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFG----FACLKRESLHTPCFTLQYAAPEVLRQDK 548
G+++RD+K EN+L D G ++ + DFG F + E ++ C T++Y AP+++R
Sbjct: 125 GIIYRDIKLENILL-DSNG-HVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGD 182
Query: 549 SGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSAL 608
G+D+ D W WS+GV++Y +L G PF +S
Sbjct: 183 GGHDKAVD-W-----------------------WSMGVLMYELLTGASPFTVDGEKNSQA 218
Query: 609 SIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
I RI + + + E +S+ AK++ + LL +P +R+
Sbjct: 219 EISRRILKSEPPYPQE----MSALAKDIIQRLLMKDPKKRL 255
Score = 104 bits (261), Expect = 1e-24
Identities = 42/69 (60%), Positives = 55/69 (79%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
RRILK+EPP P+++S D I RLL+KDP++RLG G DA+E+K+HPFF I+WDDLA
Sbjct: 222 RRILKSEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINWDDLAA 281
Query: 324 KRIPAPFVP 332
K++PAPF P
Sbjct: 282 KKVPAPFKP 290
Score = 52.3 bits (125), Expect = 5e-07
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 867 TLFEEQLLGPITRARRRTFVNRSRYNVHT----YLVLELLKGGELLDRIRQKGRCGFTEN 922
T E Q+L I R+ F+ Y T +L+L+ + GGEL + Q+ R F E
Sbjct: 51 TRTERQVLEHI---RQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRER--FKEQ 105
Query: 923 EASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
E ++V A+ +H G+++RD+K EN+LL
Sbjct: 106 EVQIYSGEIVLALEHLHKLGIIYRDIKLENILL 138
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 115 bits (290), Expect = 5e-28
Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 55/279 (19%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-------DCSEEINLLRACQGHPN-IVNL 436
+LG GS+ K T + YA+KI+ + + +C+ + A G P + L
Sbjct: 7 VLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQL 66
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
H FQ Y V+E + GG+L+ I+Q G+ F E A ++ + F+HS+G+++
Sbjct: 67 HSCFQTMDRLYFVMEYVNGGDLMYHIQQVGK--FKEPHAVFYAAEIAIGLFFLHSKGIIY 124
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRESL------HTPCFTLQYAAPEVLRQDKSG 550
RDLK +N++ D G +IK+ DFG C +E++ T C T Y APE+
Sbjct: 125 RDLKLDNVML-DAEG-HIKIADFGM-C--KENIFGGKTTRTFCGTPDYIAPEI------- 172
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSI 610
+ Q Y ++ D W+ GV+LY ML G+ PF D+ SI
Sbjct: 173 ----------------IAYQP---YGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSI 213
Query: 611 MARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
M E ++ ++S EA + K LLT +PA+R+
Sbjct: 214 M----EHNVSYP----KSLSKEAVSICKGLLTKHPAKRL 244
Score = 79.8 bits (197), Expect = 6e-16
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
++ I++ P+ LS + LL K P +RLG G +++ H FF IDW+ L
Sbjct: 210 FQSIMEHNVSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRIDWEKLE 269
Query: 323 TKRIPAPFVPKISNELDVSNFSDEFTKMIPADSP 356
+ I PF PK+ NF FT+ P +P
Sbjct: 270 RREIQPPFKPKVKGRRSAENFDKFFTREPPVLTP 303
Score = 52.1 bits (125), Expect = 7e-07
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y V+E + GG+L+ I+Q G+ F E A ++ + F+HS+G+++RDLK +N++L
Sbjct: 77 YFVMEYVNGGDLMYHIQQVGK--FKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVML 134
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 115 bits (290), Expect = 1e-27
Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 48/278 (17%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISR-----KIDCS---EEINLLRACQGH 430
D D ++G G++ + KS+ Q YA+K++S+ + D + EE +++ A
Sbjct: 44 DFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIM-AHANS 102
Query: 431 PNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
IV LH FQD+ + Y+V+E + GG+L++ + E A ++V A+ +H
Sbjct: 103 EWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLM---SNYDIPEKWARFYTAEVVLALDAIH 159
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRES-----LHTPCFTLQYAAPEVLR 545
S G +HRD+KP+N+L D +G ++K+ DFG C+K ++ T T Y +PEVL+
Sbjct: 160 SMGFIHRDVKPDNMLL-DKSG-HLKLADFG-TCMKMDANGMVRCDTAVGTPDYISPEVLK 216
Query: 546 -QDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRD 604
Q GY Y CD WS+GV LY ML G PF+A S
Sbjct: 217 SQGGDGY-----------------------YGRECDWWSVGVFLYEMLVGDTPFYADSLV 253
Query: 605 DSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLT 642
+ IM F D E +S +AK+L + LT
Sbjct: 254 GTYSKIMDHKNSLTFPDDIE----ISKQAKDLICAFLT 287
Score = 51.3 bits (123), Expect = 1e-06
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 231 GIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRIL--KTEPPIPED--LSPDVADFIS 286
G EC ++S + ++ +++ T F D Y +I+ K P+D +S D I
Sbjct: 225 GRECDWWSVGVFLYEMLVGDT-PFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLIC 283
Query: 287 RLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDVSNFSDE 346
L D RLG +D E+K HPFF W + AP VP++S+++D SNF D
Sbjct: 284 AFLT-DREVRLGRNGVD--EIKSHPFFKNDQWTFDNIRETVAPVVPELSSDIDTSNFDDI 340
Query: 347 FTKMIPADS 355
++
Sbjct: 341 EDDDKNEET 349
Score = 44.8 bits (106), Expect = 1e-04
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+ Y+V+E + GG+L++ + E A ++V A+ +HS G +HRD+KP+N+
Sbjct: 117 YLYMVMEYMPGGDLVNLM---SNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNM 173
Query: 954 LLSGISGNL 962
LL SG+L
Sbjct: 174 LLD-KSGHL 181
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 113 bits (285), Expect = 2e-27
Identities = 99/328 (30%), Positives = 148/328 (45%), Gaps = 61/328 (18%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-----DCSEEINLLRACQG--HPNIVNLH 437
+LG G++ EK+TG+ YA+KI+ +++ + + + R Q HP + L
Sbjct: 2 LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALK 61
Query: 438 CVFQDEVHTYLVLELLKGGEL---LDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV 494
FQ V+E GGEL L R R FTE A ++V+A+ ++HSR V
Sbjct: 62 YAFQTHDRLCFVMEYANGGELFFHLSRERV-----FTEERARFYGAEIVSALEYLHSRDV 116
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGF---ACLKRESLHTPCFTLQYAAPEVLRQDKSGY 551
V+RD+K ENL+ D G +IK+ DFG ++ T C T +Y APEVL +
Sbjct: 117 VYRDIKLENLML-DKDG-HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDND--- 171
Query: 552 DENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIM 611
Y D W LGV++Y M+CGR+PF+ ++D L +
Sbjct: 172 -----------------------YGRAVDWWGLGVVMYEMMCGRLPFY--NQDHERLFEL 206
Query: 612 ARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI---RMMRVKLTFHAFHQAQKEG 668
++E +F T+S EAK L LL +P QR+ ++ H F
Sbjct: 207 ILMEEIRFP------RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFL----S 256
Query: 669 FRLQDVTSAKLAQRRKNKNVSNDNSRSF 696
QDV KL K + S ++R F
Sbjct: 257 INWQDVVQKKLLPPFKPQVTSEVDTRYF 284
Score = 91.6 bits (227), Expect = 7e-20
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 7/142 (4%)
Query: 221 EVIDWDDFSRGIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILKTEPPIPEDLSPD 280
EV++ +D+ R ++ ++ + ++ L F + + + IL E P LSP+
Sbjct: 165 EVLEDNDYGRAVDWWGLG---VVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPE 221
Query: 281 VADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDV 340
++ LL KDP++RLGGG DA+E+ H FF I+W D+ K++ PF P++++E+D
Sbjct: 222 AKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDT 281
Query: 341 SNFSDEFTKMIPADSPAIVPPN 362
F DEFT A S I PP+
Sbjct: 282 RYFDDEFT----AQSITITPPD 299
Score = 48.5 bits (115), Expect = 1e-05
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 17/102 (16%)
Query: 866 VTLFEEQLLGPITRAR-----RRTFVNRSRYNVHTY----LVLELLKGGEL---LDRIRQ 913
V + ++++ +T +R R F+ +Y T+ V+E GGEL L R R
Sbjct: 32 VIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV 91
Query: 914 KGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
FTE A ++V+A+ ++HSR VV+RD+K ENL+L
Sbjct: 92 -----FTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLML 128
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 112 bits (283), Expect = 2e-27
Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 30/201 (14%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIIS----RKIDCSEEINLLRACQGHPNIVNLHCVF 440
++G+G+Y + K TGQ A+KI+ + + EE N+LR HPNI + F
Sbjct: 13 VIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAF 72
Query: 441 QDEVHT------YLVLELLKGG---ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS 491
+ +LV+EL GG +L+ +R+KG+ E + I+R+ + + ++H
Sbjct: 73 IKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGK-RLKEEWIAYILRETLRGLAYLHE 131
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGF-ACLKRE------SLHTPCFTLQYAAPEVL 544
V+HRD+K +N+L + A +K+VDFG A L + TP + APEV+
Sbjct: 132 NKVIHRDIKGQNILLTKNAE--VKLVDFGVSAQLDSTLGRRNTFIGTPY----WMAPEVI 185
Query: 545 ---RQDKSGYDENCDLWSLGV 562
Q + YD D+WSLG+
Sbjct: 186 ACDEQPDASYDARSDVWSLGI 206
Score = 46.1 bits (110), Expect = 4e-05
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 896 YLVLELLKGG---ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPEN 952
+LV+EL GG +L+ +R+KG+ E + I+R+ + + ++H V+HRD+K +N
Sbjct: 85 WLVMELCGGGSVTDLVKGLRKKGK-RLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQN 143
Query: 953 LLL 955
+LL
Sbjct: 144 ILL 146
Score = 43.8 bits (104), Expect = 2e-04
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 123 ILGDGSYSVCRRCVEKSTGQEYAVKIIS----RKIDCSEEINLLRACQGHPNI 171
++G+G+Y + K TGQ A+KI+ + + EE N+LR HPNI
Sbjct: 13 VIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNI 65
Score = 39.6 bits (93), Expect = 0.005
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 174 RCVEKSTGQEYAVKIIS----RKIDCSEEINLLRACQGHPNIVNLHCVF 218
+ K TGQ A+KI+ + + EE N+LR HPNI + F
Sbjct: 24 KARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAF 72
Score = 33.0 bits (76), Expect = 0.64
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 266 ILKTEPPI---PEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
I + PP PE+ S DFIS L+K+ +R EEL HPF
Sbjct: 230 IPRNPPPTLKSPENWSKKFNDFISECLIKNYEQR-----PFMEELLEHPF 274
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 113 bits (285), Expect = 2e-27
Identities = 43/92 (46%), Positives = 56/92 (60%)
Query: 266 ILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKR 325
I+ E P LS + + RLL ++P RRLG GE DAE++K+ PFF I+WDDL ++
Sbjct: 213 IVNDEVRYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDINWDDLLARK 272
Query: 326 IPAPFVPKISNELDVSNFSDEFTKMIPADSPA 357
I PFVP I DVSNF +EFT P +P
Sbjct: 273 IKPPFVPTIKGPEDVSNFDEEFTSEAPVLTPP 304
Score = 110 bits (278), Expect = 2e-26
Identities = 81/281 (28%), Positives = 120/281 (42%), Gaps = 58/281 (20%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVK------IISR----KIDCSEEINLLRACQGHPNIV 434
+LG G + K TG+ YA+K II+R + C + I + HP +V
Sbjct: 6 VLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLV 65
Query: 435 NLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV 494
NL FQ E H V+E GG+L+ I F+E A +V + ++H +
Sbjct: 66 NLFACFQTEDHVCFVMEYAAGGDLMMHIHTD---VFSEPRAVFYAACVVLGLQYLHENKI 122
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL------HTPCFTLQYAAPEVLRQDK 548
V+RDLK +NLL D G +K+ DFG L +E + T C T ++ APEVL +
Sbjct: 123 VYRDLKLDNLLL-DTEG-FVKIADFG---LCKEGMGFGDRTSTFCGTPEFLAPEVLTE-- 175
Query: 549 SGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSAL 608
+ Y D W LGV++Y ML G PF ++
Sbjct: 176 ------------------------TSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFD 211
Query: 609 SIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
SI+ N + +S EA + + LL NP +R+
Sbjct: 212 SIV--------NDEVRYPRFLSREAISIMRRLLRRNPERRL 244
Score = 45.1 bits (107), Expect = 1e-04
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
H V+E GG+L+ I F+E A +V + ++H +V+RDLK +NL
Sbjct: 76 HVCFVMEYAAGGDLMMHIHTDV---FSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNL 132
Query: 954 LLS 956
LL
Sbjct: 133 LLD 135
Score = 37.4 bits (87), Expect = 0.032
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 24/109 (22%)
Query: 177 EKSTGQEYAVK------IISR----KIDCSEEINLLRACQGHPNIVNLHCVFQDE----- 221
K TG+ YA+K II+R + C + I + HP +VNL FQ E
Sbjct: 20 YKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCF 79
Query: 222 VIDW---DDFSRGIECVFFSSSLIIFF---IILSFTLSFIHDYYHIQYR 264
V+++ D I FS +F+ ++L L ++H+ I YR
Sbjct: 80 VMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLG--LQYLHE-NKIVYR 125
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 111 bits (280), Expect = 6e-27
Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 31/199 (15%)
Query: 384 GILGDGSYSVCRRCVEKSTGQEYAVK---------IISRKIDCSEEINLLRACQGHPNIV 434
G++G+G+Y V +C K+TG+ A+K + + E+ +LR + H NIV
Sbjct: 7 GVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTA--LREVKVLRQLR-HENIV 63
Query: 435 NLHCVFQDEVHTYLVLE-----LLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
NL F+ + YLV E LL ELL+ G + + QL+ A+ +
Sbjct: 64 NLKEAFRRKGRLYLVFEYVERTLL---ELLEASPG----GLPPDAVRSYIWQLLQAIAYC 116
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPC----FTLQYAAPEVLR 545
HS ++HRD+KPEN+L S+ +K+ DFGFA R +P T Y APE+L
Sbjct: 117 HSHNIIHRDIKPENILVSE--SGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLV 174
Query: 546 QDKSGYDENCDLWSLGVIL 564
D + Y + D+W++G I+
Sbjct: 175 GDTN-YGKPVDVWAIGCIM 192
Score = 53.1 bits (128), Expect = 3e-07
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 896 YLVLE-----LLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKP 950
YLV E LL ELL+ G + + QL+ A+ + HS ++HRD+KP
Sbjct: 76 YLVFEYVERTLL---ELLEASPG----GLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKP 128
Query: 951 ENLLLS 956
EN+L+S
Sbjct: 129 ENILVS 134
Score = 35.0 bits (81), Expect = 0.15
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 34/97 (35%)
Query: 122 GILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNICRRCVEKSTG 181
G++G+G+Y V +C K+TG+ A+K K SE+ ++
Sbjct: 7 GVVGEGAYGVVLKCRNKATGEIVAIK----KFKESEDDEDVK------------------ 44
Query: 182 QEYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVF 218
K R E+ +LR + H NIVNL F
Sbjct: 45 -----KTALR------EVKVLRQLR-HENIVNLKEAF 69
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 110 bits (278), Expect = 7e-27
Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 47/233 (20%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLR-------ACQGHPNIVNLHC 438
+G G+ +V + ++ A+K I + C ++ LR C HPN+V +
Sbjct: 9 IGVGATAVVYAAICLPNNEKVAIKRIDLE-KCQTSVDELRKEVQAMSQCN-HPNVVKYYT 66
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCG-FTENEASRIMRQLVAAVHFMHSRGVVHR 497
F +LV+ L GG LLD ++ G E + ++++++ + ++HS G +HR
Sbjct: 67 SFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHR 126
Query: 498 DLKPENLLFSDPAGDNIKVVDFGFA-------CLKRESLH----TPCFTLQYAAPEVLRQ 546
D+K N+L + +K+ DFG + R+ TPC + APEV+ Q
Sbjct: 127 DIKAGNILLGEDGS--VKIADFGVSASLADGGDRTRKVRKTFVGTPC----WMAPEVMEQ 180
Query: 547 DKSGYDENCDLWSLGV-------------------ILVNVLRQDKSGYDENCD 580
GYD D+WS G+ +L+ L+ D + D
Sbjct: 181 VH-GYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGAD 232
Score = 53.1 bits (128), Expect = 2e-07
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 896 YLVLELLKGGELLDRIRQKGRCG-FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
+LV+ L GG LLD ++ G E + ++++++ + ++HS G +HRD+K N+L
Sbjct: 75 WLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNIL 134
Query: 955 L 955
L
Sbjct: 135 L 135
Score = 32.7 bits (75), Expect = 0.71
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 283 DFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
IS L KDP +R AEEL +H FF
Sbjct: 242 KMISLCLQKDPSKRP-----TAEELLKHKFF 267
>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 2. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK2 was the first identified target of
activated RhoA, and was found to play a role in stress
fiber and focal adhesion formation. It is prominently
expressed in the brain, heart, and skeletal muscles. It
is implicated in vascular and neurological disorders,
such as hypertension and vasospasm of the coronary and
cerebral arteries. ROCK2 is also activated by caspase-2
cleavage, resulting in thrombin-induced microparticle
generation in response to cell activation. Mice
deficient in ROCK2 show intrauterine growth retardation
and embryonic lethality because of placental
dysfunction.
Length = 370
Score = 113 bits (283), Expect = 7e-27
Identities = 87/294 (29%), Positives = 139/294 (47%), Gaps = 48/294 (16%)
Query: 363 FDKIFKGSLFFEQYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISR-----KIDC 417
++KI + + D D ++G G++ + KS+ + YA+K++S+ + D
Sbjct: 28 YEKIVRKIRKLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDS 87
Query: 418 S---EEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENE 474
+ EE +++ A P +V L C FQD+ + Y+V+E + GG+L++ + E
Sbjct: 88 AFFWEERDIM-AFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYD---VPEKW 143
Query: 475 ASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL----- 529
A ++V A+ +HS G++HRD+KP+N+L D G ++K+ DFG C+K +
Sbjct: 144 AKFYTAEVVLALDAIHSMGLIHRDVKPDNMLL-DKHG-HLKLADFG-TCMKMDETGMVRC 200
Query: 530 HTPCFTLQYAAPEVLR-QDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVIL 588
T T Y +PEVL+ Q GY Y CD WS+GV L
Sbjct: 201 DTAVGTPDYISPEVLKSQGGDGY-----------------------YGRECDWWSVGVFL 237
Query: 589 YTMLCGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLT 642
+ ML G PF+A S + IM F D E +S AK L + LT
Sbjct: 238 FEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVE----ISKHAKNLICAFLT 287
Score = 51.9 bits (124), Expect = 1e-06
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 231 GIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRIL--KTEPPIPED--LSPDVADFIS 286
G EC ++S + +F +++ T F D Y +I+ K PED +S + I
Sbjct: 225 GRECDWWSVGVFLFEMLVGDT-PFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLIC 283
Query: 287 RLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDVSNFSD 345
L D RLG + EE+K+HPFF W+ + AP VP++S+++D SNF D
Sbjct: 284 AFLT-DREVRLGRNGV--EEIKQHPFFKNDQWNWDNIRETAAPVVPELSSDIDSSNFDD 339
Score = 45.4 bits (107), Expect = 1e-04
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+ Y+V+E + GG+L++ + E A ++V A+ +HS G++HRD+KP+N+
Sbjct: 117 YLYMVMEYMPGGDLVNLMSNYD---VPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNM 173
Query: 954 LL 955
LL
Sbjct: 174 LL 175
>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy
protein kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Myotonic Dystrophy
protein kinase (DMPK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The DMPK-like subfamily is composed of DMPK
and DMPK-related cell division control protein 42
(Cdc42) binding kinase (MRCK). Three isoforms of MRCK
are known, named alpha, beta and gamma. The DMPK gene is
implicated in myotonic dystrophy 1 (DM1), an inherited
multisystemic disorder with symptoms that include muscle
hyperexcitability, progressive muscle weakness and
wasting, cataract development, testicular atrophy, and
cardiac conduction defects. The genetic basis for DM1 is
the mutational expansion of a CTG repeat in the 3'-UTR
of DMPK. DMPK is expressed in skeletal and cardiac
muscles, and in central nervous tissues. The functional
role of DMPK is not fully understood. It may play a role
in the signal transduction and homeostasis of calcium.
MRCK is activated via interaction with the small GTPase
Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent
cell motility. MRCKgamma is expressed in heart and
skeletal muscles, unlike MRCKalpha and MRCKbeta, which
are expressed ubiquitously.
Length = 331
Score = 111 bits (280), Expect = 1e-26
Identities = 90/284 (31%), Positives = 137/284 (48%), Gaps = 58/284 (20%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISR-------KIDC-SEEINLLRACQGH 430
D + ++G G++ K+TGQ YA+KI+++ + C EE ++L G
Sbjct: 2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVL--VNGD 59
Query: 431 PN-IVNLHCVFQDEVHTYLVLELLKGGELL-------DRIRQKGRCGFTENEASRIMRQL 482
I NLH FQDE + YLV++ GG+LL DR+ E+ A + ++
Sbjct: 60 RRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRL--------PEDMARFYLAEM 111
Query: 483 VAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHT-----PCFTLQ 537
V A+ +H G VHRD+KP+N+L D G +I++ DFG +CL+ + T T
Sbjct: 112 VLAIDSVHQLGYVHRDIKPDNVLL-DKNG-HIRLADFG-SCLRLLADGTVQSNVAVGTPD 168
Query: 538 YAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVP 597
Y +PE+L+ + G K Y CD WSLGV +Y ML G P
Sbjct: 169 YISPEILQAMEDG---------------------KGRYGPECDWWSLGVCMYEMLYGETP 207
Query: 598 FHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLL 641
F+A S ++ IM + F F + + VS EAK+L + L+
Sbjct: 208 FYAESLVETYGKIMNH--KEHFQFPPDV-TDVSEEAKDLIRRLI 248
Score = 64.8 bits (158), Expect = 6e-11
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 271 PPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPF 330
PP D+S + D I RL+ P RLG L ++ K HPFF IDWD++ + AP+
Sbjct: 230 PPDVTDVSEEAKDLIRRLICS-PETRLGRNGL--QDFKDHPFFEGIDWDNI--RNSTAPY 284
Query: 331 VPKISNELDVSNFS-DEFTKMIPADSPAIVPPNFDKIFKG 369
VP++S+ D SNF D+ + +PP+ F G
Sbjct: 285 VPEVSSPTDTSNFDVDDDD----LRNTESLPPSSHGAFSG 320
Score = 44.4 bits (105), Expect = 2e-04
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Query: 892 NVHTYLVLELLKGGELL-------DRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 944
+ YLV++ GG+LL DR+ E+ A + ++V A+ +H G V
Sbjct: 73 ENNLYLVMDYYVGGDLLTLLSKFEDRL--------PEDMARFYLAEMVLAIDSVHQLGYV 124
Query: 945 HRDLKPENLLL 955
HRD+KP+N+LL
Sbjct: 125 HRDIKPDNVLL 135
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 110 bits (276), Expect = 1e-26
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 27/191 (14%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNLH 437
+G GS+ + ++K T Q A+K+I ++ +E EI L C+ P I +
Sbjct: 9 IGKGSFGEVYKAIDKRTNQVVAIKVID--LEEAEDEIEDIQQEIQFLSQCRS-PYITKYY 65
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 497
F ++++E GG LD ++ E + I+R+++ + ++H G +HR
Sbjct: 66 GSFLKGSKLWIIMEYCGGGSCLDLLK---PGKLDETYIAFILREVLLGLEYLHEEGKIHR 122
Query: 498 DLKPENLLFSDPAGDNIKVVDFG------FACLKRESLHTPCFTLQYAAPEVLRQDKSGY 551
D+K N+L S+ GD +K+ DFG KR +T T + APEV++Q SGY
Sbjct: 123 DIKAANILLSE-EGD-VKLADFGVSGQLTSTMSKR---NTFVGTPFWMAPEVIKQ--SGY 175
Query: 552 DENCDLWSLGV 562
DE D+WSLG+
Sbjct: 176 DEKADIWSLGI 186
Score = 54.9 bits (133), Expect = 5e-08
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 892 NVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPE 951
++++E GG LD ++ E + I+R+++ + ++H G +HRD+K
Sbjct: 71 GSKLWIIMEYCGGGSCLDLLK---PGKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAA 127
Query: 952 NLLLS----------GISGNL 962
N+LLS G+SG L
Sbjct: 128 NILLSEEGDVKLADFGVSGQL 148
Score = 38.4 bits (90), Expect = 0.013
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 264 RRILKTEPPIPED--LSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
I K PP E S DF+S L KDP+ R A+EL +H F
Sbjct: 208 FLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKER-----PSAKELLKHKF 253
Score = 31.8 bits (73), Expect = 1.5
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNICR 173
+G GS+ + ++K T Q A+K+I ++ +E EI L C+ P I +
Sbjct: 9 IGKGSFGEVYKAIDKRTNQVVAIKVID--LEEAEDEIEDIQQEIQFLSQCRS-PYITK 63
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also
called PITSLRE, exists in different isoforms which are
named using the alias CDK11(p). The CDC2L1 gene produces
two protein products, CDK11(p110) and CDK11(p58). CDC2L1
is also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the
completion of mitosis. CDK11(p46) is formed from the
larger isoforms by caspases during TNFalpha- and
Fas-induced apoptosis. It functions as a downstream
effector kinase in apoptotic signaling pathways and
interacts with eukaryotic initiation factor 3f (eIF3f),
p21-activated kinase (PAK1), and Ran-binding protein
(RanBPM).
Length = 293
Score = 109 bits (274), Expect = 4e-26
Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 42/207 (20%)
Query: 389 GSYSVCRRCVEKSTGQEYAVKIISRKIDCSE----------EINLLRACQGHPNIVNLHC 438
G+Y V R +K TG+ A+K + K++ E EIN+L Q HPNIV +
Sbjct: 16 GTYGVVYRARDKKTGEIVALKKL--KME-KEKEGFPITSLREINILLKLQ-HPNIVTVKE 71
Query: 439 VF----QDEVHTYLVLEL----LKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
V D++ Y+V+E LK L++ ++Q F ++E +M QL++ V +H
Sbjct: 72 VVVGSNLDKI--YMVMEYVEHDLKS--LMETMKQ----PFLQSEVKCLMLQLLSGVAHLH 123
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRE------SLHTPCFTLQYAAPEVL 544
++HRDLK NLL ++ G +K+ DFG A RE TL Y APE+L
Sbjct: 124 DNWILHRDLKTSNLLLNN-RGI-LKICDFGLA---REYGSPLKPYTQLVVTLWYRAPELL 178
Query: 545 RQDKSGYDENCDLWSLGVILVNVLRQD 571
K Y D+WS+G I +L +
Sbjct: 179 LGAKE-YSTAIDMWSVGCIFAELLTKK 204
Score = 59.9 bits (146), Expect = 2e-09
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 894 HTYLVLEL----LKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 949
Y+V+E LK L++ ++Q F ++E +M QL++ V +H ++HRDLK
Sbjct: 80 KIYMVMEYVEHDLKS--LMETMKQ----PFLQSEVKCLMLQLLSGVAHLHDNWILHRDLK 133
Query: 950 PENLLLS 956
NLLL+
Sbjct: 134 TSNLLLN 140
Score = 31.8 bits (73), Expect = 1.7
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 127 GSYSVCRRCVEKSTGQEYAVKIISRKIDCSE----------EINLLRACQGHPNI 171
G+Y V R +K TG+ A+K + K++ E EIN+L Q HPNI
Sbjct: 16 GTYGVVYRARDKKTGEIVALKKL--KME-KEKEGFPITSLREINILLKLQ-HPNI 66
Score = 31.8 bits (73), Expect = 1.7
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 151 RKIDCSEEINLLRACQGHPNICRRCVEKSTGQEYAVKIISRKIDCSE----------EIN 200
R +D E++N R +G + R +K TG+ A+K + K++ E EIN
Sbjct: 2 RSVDEYEKLN--RIEEGTYGVVYRARDKKTGEIVALKKL--KME-KEKEGFPITSLREIN 56
Query: 201 LLRACQGHPNIVNL 214
+L Q HPNIV +
Sbjct: 57 ILLKLQ-HPNIVTV 69
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta
plays a role in cell cycle regulation and programmed
cell death in many cell types. It slows down cell
proliferation, inducing cell cycle arrest and enhancing
cell differentiation. PKC-delta is also involved in the
regulation of transcription as well as immune and
inflammatory responses. It plays a central role in the
genotoxic stress response that leads to DNA
damaged-induced apoptosis.
Length = 316
Score = 109 bits (274), Expect = 4e-26
Identities = 93/339 (27%), Positives = 151/339 (44%), Gaps = 56/339 (16%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVK-------IISRKIDCSE-EINLLRACQGHPNIVNL 436
+LG GS+ K G+ +AVK +I ++C+ E +L +P + +L
Sbjct: 2 VLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
+C FQ + H + V+E L GG+L+ I+ KGR F A+ ++V + F+HS+G+++
Sbjct: 62 YCTFQTKEHLFFVMEFLNGGDLMFHIQDKGR--FDLYRATFYAAEIVCGLQFLHSKGIIY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFA---CLKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLK +N++ D G +IK+ DFG T C T Y APE+L+ K
Sbjct: 120 RDLKLDNVML-DRDG-HIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLK----- 172
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
Y + D WS GV+LY ML G+ PFH D+ SI R
Sbjct: 173 ---------------------YTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESI--R 209
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRIRM---MRVKLTFHAFHQAQKEGFR 670
+ + W ++ E+K++ + L +P +R+ + +R F + E
Sbjct: 210 VDTPHY----PRW--ITKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTINWTALEKRE 263
Query: 671 LQDVTSAKLAQRRKNKNVSNDNSRSFSSTSSSLSSSSSG 709
L K+ K+ + ++ R F S LS S
Sbjct: 264 LDPPFKPKV----KSPSDYSNFDREFLSEKPRLSYSDKN 298
Score = 60.0 bits (145), Expect = 2e-09
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
+ I P P ++ + D + +L +DP RRLG ++ HPFF I+W L
Sbjct: 205 FESIRVDTPHYPRWITKESKDILEKLFERDPTRRLG----VVGNIRGHPFFKTINWTALE 260
Query: 323 TKRIPAPFVPKISNELDVSNFSDEF 347
+ + PF PK+ + D SNF EF
Sbjct: 261 KRELDPPFKPKVKSPSDYSNFDREF 285
Score = 53.4 bits (128), Expect = 2e-07
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
H + V+E L GG+L+ I+ KGR F A+ ++V + F+HS+G+++RDLK +N+
Sbjct: 70 HLFFVMEFLNGGDLMFHIQDKGR--FDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNV 127
Query: 954 LLSG 957
+L
Sbjct: 128 MLDR 131
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 109 bits (274), Expect = 5e-26
Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 55/285 (19%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-------DCSEEINLLRACQGHP 431
D + +LG GS+ K T + YA+KI+ + + +C+ + A G P
Sbjct: 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKP 60
Query: 432 N-IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
+ LH FQ Y V+E + GG+L+ +I+Q GR F E A ++ + F+H
Sbjct: 61 PFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQVGR--FKEPHAVFYAAEIAIGLFFLH 118
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL------HTPCFTLQYAAPEVL 544
S+G+++RDLK +N++ D G +IK+ DFG +E++ T C T Y APE++
Sbjct: 119 SKGIIYRDLKLDNVML-DSEG-HIKIADFGMC---KENMWDGVTTKTFCGTPDYIAPEII 173
Query: 545 RQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRD 604
Y ++ D W+ GV+LY ML G+ PF D
Sbjct: 174 AYQP--------------------------YGKSVDWWAFGVLLYEMLAGQAPFEGEDED 207
Query: 605 DSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ SIM + ++S EA + K L+T +P +R+
Sbjct: 208 ELFQSIMEH--------NVAYPKSMSKEAVAICKGLMTKHPGKRL 244
Score = 63.5 bits (154), Expect = 1e-10
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
++ I++ P+ +S + L+ K P +RLG G ++K H FF IDW+ L
Sbjct: 210 FQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLE 269
Query: 323 TKRIPAPFVPKISNELDVSNFSDEFTKMIPADSPAIVPPN 362
K + P+ PK D NF FT+ P + PP+
Sbjct: 270 RKEVQPPYKPKACGR-DAENFDKFFTR----HPPVLTPPD 304
Score = 50.4 bits (120), Expect = 2e-06
Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y V+E + GG+L+ +I+Q GR F E A ++ + F+HS+G+++RDLK +N++L
Sbjct: 77 YFVMEYVNGGDLMYQIQQVGR--FKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVML 134
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 108 bits (272), Expect = 9e-26
Identities = 85/284 (29%), Positives = 126/284 (44%), Gaps = 65/284 (22%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKI--------DCSEEINLLRACQGHPNIVNL 436
++G GS+ K+ G+ YAVK++ +K E N+L HP +V L
Sbjct: 2 VIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
H FQ Y VL+ + GGEL + Q+ R F E A ++ +A+ ++HS +++
Sbjct: 62 HYSFQTADKLYFVLDYVNGGELFFHL-QRERS-FPEPRARFYAAEIASALGYLHSLNIIY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRESLH------TPCFTLQYAAPEVLRQDKSG 550
RDLKPEN+L ++ + DFG L +E + T C T +Y APEVLR
Sbjct: 120 RDLKPENILLDSQG--HVVLTDFG---LCKEGIEHSKTTSTFCGTPEYLAPEVLR----- 169
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRD-----D 605
K YD D W LG +LY ML G PF+ SRD D
Sbjct: 170 ---------------------KQPYDRTVDWWCLGAVLYEMLYGLPPFY--SRDTAEMYD 206
Query: 606 SALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ L+ R+K +S A+ L + LL + +R+
Sbjct: 207 NILNKPLRLKPN-----------ISVSARHLLEGLLQKDRTKRL 239
Score = 86.0 bits (213), Expect = 6e-18
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
Y IL + ++S + LL KD +RLG + D E+K H FF+ I+WDDL
Sbjct: 205 YDNILNKPLRLKPNISVSARHLLEGLLQKDRTKRLGAKD-DFLEIKNHVFFSSINWDDLV 263
Query: 323 TKRIPAPFVPKISNELDVSNFSDEFTKMIPADSPAIVPPN 362
K+I PF P +S +D+ +F EFT+ P + P+
Sbjct: 264 NKKITPPFNPNVSGPMDLKHFDPEFTE-EPVPNSVGKSPD 302
Score = 50.9 bits (122), Expect = 2e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y VL+ + GGEL + Q+ R F E A ++ +A+ ++HS +++RDLKPEN+LL
Sbjct: 72 YFVLDYVNGGELFFHL-QRERS-FPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILL 129
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 106 bits (268), Expect = 2e-25
Identities = 82/320 (25%), Positives = 125/320 (39%), Gaps = 96/320 (30%)
Query: 381 DKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRK-------IDCSEEINLLRACQGHPNI 433
+K +G+G+Y + K TG+ A+K I + I EI LL+ + HPNI
Sbjct: 2 EKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLR-HPNI 60
Query: 434 VNLHCVFQDEVH--TYLVLEL----LKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVH 487
V L + + Y+V E L G LLD K FTE++ M+QL+ +
Sbjct: 61 VRLKEIVTSKGKGSIYMVFEYMDHDLTG--LLDSPEVK----FTESQIKCYMKQLLEGLQ 114
Query: 488 FMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKR--ESLHTPCF-----TLQYAA 540
++HS G++HRD+K N+L ++ +K+ DFG A R ++ + TL Y
Sbjct: 115 YLHSNGILHRDIKGSNILINN--DGVLKLADFGLA---RPYTKRNSADYTNRVITLWYRP 169
Query: 541 PEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHA 600
PE+L LG Y D+WS+G IL + G+ F
Sbjct: 170 PELL---------------LGATR----------YGPEVDMWSVGCILAELFLGKPIFQG 204
Query: 601 RSRDDSALSIMARIKEGQFNF----DAEAWSTV--------------------------- 629
+ L + +I F E W V
Sbjct: 205 STE----LEQLEKI----FELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLI 256
Query: 630 SSEAKELTKSLLTVNPAQRI 649
A +L LLT++P +RI
Sbjct: 257 DPSALDLLDKLLTLDPKKRI 276
Score = 61.4 bits (150), Expect = 5e-10
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 12/75 (16%)
Query: 895 TYLVLEL----LKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKP 950
Y+V E L G LLD K FTE++ M+QL+ + ++HS G++HRD+K
Sbjct: 75 IYMVFEYMDHDLTG--LLDSPEVK----FTESQIKCYMKQLLEGLQYLHSNGILHRDIKG 128
Query: 951 ENLLLSGISGNLIKI 965
N+L++ G L K+
Sbjct: 129 SNILINN-DGVL-KL 141
Score = 32.5 bits (75), Expect = 0.90
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 174 RCVEKSTGQEYAVKIISRK-------IDCSEEINLLRACQGHPNIVNLHCV 217
+ K TG+ A+K I + I EI LL+ + HPNIV L +
Sbjct: 17 KARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLR-HPNIVRLKEI 66
Score = 31.0 bits (71), Expect = 2.5
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 119 DKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRK-------IDCSEEINLLRACQGHPNI 171
+K +G+G+Y + K TG+ A+K I + I EI LL+ + HPNI
Sbjct: 2 EKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLR-HPNI 60
Query: 172 CRR---CVEKSTGQEYAV 186
R K G Y V
Sbjct: 61 VRLKEIVTSKGKGSIYMV 78
Score = 31.0 bits (71), Expect = 3.0
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
Y+R L+ + P D + +LL DP++R + A++ +H +F
Sbjct: 244 YKRRLREF--FKHLIDPSALDLLDKLLTLDPKKR-----ISADQALQHEYF 287
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological
functions. Phosphorylated GPCRs bind to arrestins, which
prevents further G protein signaling despite the
presence of activating ligand. GRKs contain a central
catalytic domain, flanked by N- and C-terminal
extensions. The N-terminus contains an RGS (regulator of
G protein signaling) homology (RH) domain and several
motifs. The C-terminus diverges among different groups
of GRKs. There are seven types of GRKs, named GRK1 to
GRK7. They are subdivided into three main groups: visual
(GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and
GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is
widespread while GRK1/4/7 show a limited tissue
distribution. The substrate spectrum of the widely
expressed GRKs partially overlaps. GRKs play important
roles in the cardiovascular, immune, respiratory,
skeletal, and nervous systems.
Length = 277
Score = 106 bits (266), Expect = 3e-25
Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 47/276 (17%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRK---------IDCSEEINLLRACQGHPNIVNL 436
LG G + C K+TG+ YA K + +K + +E+ L + IV+L
Sbjct: 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKV--SSRFIVSL 58
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
F+ + LV+ L+ GG+L I G GF E A Q++ + +H R +V+
Sbjct: 59 AYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVY 118
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFAC--LKRESLHTPCFTLQYAAPEVLRQDKSGYDEN 554
RDLKPEN+L D N+++ D G A + + T Y APEVL+ +
Sbjct: 119 RDLKPENVLLDDHG--NVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEV------ 170
Query: 555 CDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARI 614
YD + D ++LG LY M+ GR PF R + R
Sbjct: 171 --------------------YDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRT 210
Query: 615 KEGQFNFDAEAWS-TVSSEAKELTKSLLTVNPAQRI 649
E A + S EAK+L ++LL +P +R+
Sbjct: 211 LE-----MAVEYPDKFSPEAKDLCEALLQKDPEKRL 241
Score = 68.3 bits (167), Expect = 2e-12
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
RR L+ P+ SP+ D LL KDP +RLG A+E++ HP F ++W L
Sbjct: 208 RRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDLNWRRLEA 267
Query: 324 KRIPAPFVP 332
+ PF+P
Sbjct: 268 GMLEPPFIP 276
Score = 54.8 bits (132), Expect = 7e-08
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LV+ L+ GG+L I G GF E A Q++ + +H R +V+RDLKPEN+LL
Sbjct: 70 LVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLL 128
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 106 bits (267), Expect = 3e-25
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 24/197 (12%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEIN------LLRACQGHPNIVNLHCV 439
+G+G++S + + TG+ YA+K + + E++N LR HPNI+ L V
Sbjct: 7 IGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEV 66
Query: 440 FQDEVH--TYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 497
D LV EL+ L + I+ + R E M QL+ ++ MH G+ HR
Sbjct: 67 LFDRKTGRLALVFELMDM-NLYELIKGRKRP-LPEKRVKSYMYQLLKSLDHMHRNGIFHR 124
Query: 498 DLKPENLLFSDPAGDNIKVVDFGFACLKRESLHT-PCFTLQ-----YAAPEVLRQDKSGY 551
D+KPEN+L D D +K+ DFG +++ P +T Y APE L D Y
Sbjct: 125 DIKPENILIKD---DILKLADFGSCR----GIYSKPPYTEYISTRWYRAPECLLTDGY-Y 176
Query: 552 DENCDLWSLGVILVNVL 568
D+W++G + +L
Sbjct: 177 GPKMDIWAVGCVFFEIL 193
Score = 58.4 bits (142), Expect = 4e-09
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
LV EL+ L + I+ + R E M QL+ ++ MH G+ HRD+KPEN+L+
Sbjct: 77 LVFELMDM-NLYELIKGRKRP-LPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIK 134
Query: 957 GISGNL 962
L
Sbjct: 135 DDILKL 140
Score = 39.6 bits (93), Expect = 0.005
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 34/98 (34%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNICRRCVEKSTGQE 183
+G+G++S + + TG+ YA+K + + E++N LR
Sbjct: 7 IGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLR-------------------- 46
Query: 184 YAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDE 221
EI LR HPNI+ L V D
Sbjct: 47 --------------EIQALRRLSPHPNILRLIEVLFDR 70
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 107 bits (268), Expect = 3e-25
Identities = 92/331 (27%), Positives = 156/331 (47%), Gaps = 67/331 (20%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNL 436
+LG G++ EK++G+ YA+KI+ +++ ++ E +L+ + HP + +L
Sbjct: 2 LLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTR-HPFLTSL 60
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
FQ + V+E + GGEL + ++ F+E+ ++V+A+ ++HS +V+
Sbjct: 61 KYSFQTKDRLCFVMEYVNGGELFFHLSRERV--FSEDRTRFYGAEIVSALDYLHSGKIVY 118
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGF---ACLKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLK ENL+ D G +IK+ DFG ++ T C T +Y APEVL +
Sbjct: 119 RDLKLENLML-DKDG-HIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDND----- 171
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
Y D W LGV++Y M+CGR+PF+ ++D L +
Sbjct: 172 ---------------------YGRAVDWWGLGVVMYEMMCGRLPFY--NQDHEKLFELIL 208
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI--------RMMRVKLTFHAFHQAQ 665
+++ +F T+S++AK L LL +P +R+ +MR H+F
Sbjct: 209 MEDIKFP------RTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMR-----HSFFT-- 255
Query: 666 KEGFRLQDVTSAKLAQRRKNKNVSNDNSRSF 696
G QDV KL K + S ++R F
Sbjct: 256 --GVNWQDVYDKKLVPPFKPQVTSETDTRYF 284
Score = 89.4 bits (221), Expect = 4e-19
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 221 EVIDWDDFSRGIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILKTEPPIPEDLSPD 280
EV++ +D+ R ++ ++ + ++ L F + + + IL + P LS D
Sbjct: 165 EVLEDNDYGRAVDWWGLG---VVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTLSAD 221
Query: 281 VADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDV 340
+S LL+KDP +RLGGG DA+E+ RH FF ++W D+ K++ PF P++++E D
Sbjct: 222 AKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGVNWQDVYDKKLVPPFKPQVTSETDT 281
Query: 341 SNFSDEFTKMIPADSPAIVPP 361
F +EFT A + I PP
Sbjct: 282 RYFDEEFT----AQTITITPP 298
Score = 43.1 bits (101), Expect = 5e-04
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 867 TLFEEQLLGPITRARRRTFVNRSRYNVHTY----LVLELLKGGELLDRIRQKGRCGFTEN 922
TL E ++L + R F+ +Y+ T V+E + GGEL + ++ F+E+
Sbjct: 42 TLTESRVL----KNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRERV--FSED 95
Query: 923 EASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V+A+ ++HS +V+RDLK ENL+L
Sbjct: 96 RTRFYGAEIVSALDYLHSGKIVYRDLKLENLML 128
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 105 bits (263), Expect = 5e-25
Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 23/200 (11%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE----------EINLLRACQGHPNIV 434
+LG G++ C + TG+E AVK + D E EI LL+ Q H IV
Sbjct: 9 LLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQ-HERIV 67
Query: 435 NLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV 494
+ +D+ + +E + GG + D+++ G TE + RQ++ V ++HS +
Sbjct: 68 QYYGCLRDDETLSIFMEYMPGGSVKDQLKAYG--ALTETVTRKYTRQILEGVEYLHSNMI 125
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGFA------CLKRESLHTPCFTLQYAAPEVLRQDK 548
VHRD+K N+L D AG N+K+ DFG + C + + T + +PEV+ +
Sbjct: 126 VHRDIKGANIL-RDSAG-NVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGE- 182
Query: 549 SGYDENCDLWSLGVILVNVL 568
GY D+WS+G +V +L
Sbjct: 183 -GYGRKADVWSVGCTVVEML 201
Score = 52.9 bits (127), Expect = 2e-07
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 870 EEQLLGPITRARRRTFVNRSRYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMR 929
E QLL + R + R + + +E + GG + D+++ G TE + R
Sbjct: 54 EIQLLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYG--ALTETVTRKYTR 111
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLL 954
Q++ V ++HS +VHRD+K N+L
Sbjct: 112 QILEGVEYLHSNMIVHRDIKGANIL 136
Score = 40.9 bits (96), Expect = 0.002
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 269 TEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
T P +P +SPD +F+ R V++ ++R AEEL RH F
Sbjct: 224 TNPQLPSHVSPDARNFLRRTFVENAKKR-----PSAEELLRHFFV 263
Score = 30.5 bits (69), Expect = 3.7
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 123 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE----------EINLLRACQGHPNI 171
+LG G++ C + TG+E AVK + D E EI LL+ Q H I
Sbjct: 9 LLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQ-HERI 66
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 2. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more
restricted distribution that SGK1 and is most abundantly
expressed in epithelial tissues including kidney, liver,
pancreas, and the choroid plexus of the brain. In vitro
cellular assays show that SGK2 can stimulate the
activity of ion channels, the glutamate transporter
EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 106 bits (265), Expect = 8e-25
Identities = 76/228 (33%), Positives = 107/228 (46%), Gaps = 41/228 (17%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNL 436
++G GS+ KS G YAVK++ +K + E N+L HP +V L
Sbjct: 2 VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
H FQ Y VL+ + GGEL + Q+ RC F E A ++ +A+ ++HS +++
Sbjct: 62 HYSFQTAEKLYFVLDYVNGGELFFHL-QRERC-FLEPRARFYAAEVASAIGYLHSLNIIY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGF---ACLKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLKPEN+L D G ++ + DFG E+ T C T +Y APEVLR
Sbjct: 120 RDLKPENILL-DSQG-HVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLR-------- 169
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHAR 601
K YD D W LG +LY ML G PF++R
Sbjct: 170 ------------------KEPYDRTVDWWCLGAVLYEMLYGLPPFYSR 199
Score = 68.5 bits (167), Expect = 3e-12
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
Y IL +P + D + LL KD RRRLG + D E+K H FF+ I+WDDL
Sbjct: 205 YDNILHKPLQLPGGKTVAACDLLVGLLHKDQRRRLGA-KADFLEIKNHVFFSPINWDDLY 263
Query: 323 TKRIPAPFVPKISNELDVSNFSDEFTK-MIPA 353
KRI P+ P ++ D+ +F EFT+ + +
Sbjct: 264 HKRITPPYNPNVAGPADLRHFDPEFTQEAVSS 295
Score = 53.8 bits (129), Expect = 2e-07
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 882 RRTFVNRSRYNVHT----YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHF 937
+ F+ Y+ T Y VL+ + GGEL + Q+ RC F E A ++ +A+ +
Sbjct: 54 KHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHL-QRERC-FLEPRARFYAAEVASAIGY 111
Query: 938 MHSRGVVHRDLKPENLLL 955
+HS +++RDLKPEN+LL
Sbjct: 112 LHSLNIIYRDLKPENILL 129
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 105 bits (264), Expect = 8e-25
Identities = 66/200 (33%), Positives = 95/200 (47%), Gaps = 29/200 (14%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE---------EINLLRACQ--GHPNI 433
+G+G+Y + + +TG+ A+K + ++ SE EI LL+ + HPNI
Sbjct: 6 EIGEGAYGTVYKARDLNTGRFVALKKV--RVPLSEEGIPLSTLREIALLKQLESFEHPNI 63
Query: 434 VNLHCVFQ-----DEVHTYLVLELLKG--GELLDRIRQKGRCGFTENEASRIMRQLVAAV 486
V L V E+ LV E + L + + G +MRQL+ V
Sbjct: 64 VRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPG---LPPETIKDLMRQLLRGV 120
Query: 487 HFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA-CLKRESLHTPCF-TLQYAAPEVL 544
F+HS +VHRDLKP+N+L + + +K+ DFG A E T TL Y APEVL
Sbjct: 121 DFLHSHRIVHRDLKPQNILVT--SDGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVL 178
Query: 545 RQDKSGYDENCDLWSLGVIL 564
Q S Y D+WS+G I
Sbjct: 179 LQ--SSYATPVDMWSVGCIF 196
Score = 53.8 bits (130), Expect = 1e-07
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 918 GFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSGISGNLIKI 965
G +MRQL+ V F+HS +VHRDLKP+N+L++ S +KI
Sbjct: 103 GLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVT--SDGQVKI 148
Score = 32.6 bits (75), Expect = 0.79
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 262 QYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
Y +PE + + D + ++L +P +R+ A E +HP+F
Sbjct: 243 SYTPRSFKSF-VPE-ICEEGLDLLKKMLTFNPHKRIS-----AFEALQHPYF 287
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta
is selectively expressed in T-cells and plays an
important and non-redundant role in several aspects of
T-cell biology. Although T-cells also express other PKC
isoforms, PKC-theta is unique in that upon antigen
stimulation, it is translocated to the plasma membrane
at the immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 105 bits (263), Expect = 1e-24
Identities = 79/276 (28%), Positives = 128/276 (46%), Gaps = 49/276 (17%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-------DCSE-EINLLRACQGHPNIVNL 436
+LG GS+ K T Q +A+K + + + +C+ E +L HP + +L
Sbjct: 2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
+C FQ + + + V+E L GG+L+ I+ + F A+ +++ + F+HS+G+V+
Sbjct: 62 YCTFQTKENLFFVMEYLNGGDLMFHIQSCHK--FDLPRATFYAAEIICGLQFLHSKGIVY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGF---ACLKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLK +N+L D G +IK+ DFG L T C T Y APE+L K
Sbjct: 120 RDLKLDNILL-DTDG-HIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQK----- 172
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
Y+ + D WS GV+LY ML G+ PFH ++ SI R
Sbjct: 173 ---------------------YNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSI--R 209
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ + W ++ EAK++ L P +R+
Sbjct: 210 MDNPCY----PRW--LTREAKDILVKLFVREPERRL 239
Score = 66.1 bits (161), Expect = 2e-11
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
++ I P P L+ + D + +L V++P RRLG ++++HPFF IDW L
Sbjct: 205 FQSIRMDNPCYPRWLTREAKDILVKLFVREPERRLGV----KGDIRQHPFFREIDWSALE 260
Query: 323 TKRIPAPFVPKISNELDVSNFSDEFTKMIP 352
+ I PF PK+ + D SNF EF P
Sbjct: 261 EREIEPPFKPKVKSANDCSNFDKEFLNEKP 290
Score = 46.9 bits (111), Expect = 3e-05
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+ + V+E L GG+L+ I+ + F A+ +++ + F+HS+G+V+RDLK +N+
Sbjct: 70 NLFFVMEYLNGGDLMFHIQSCHK--FDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNI 127
Query: 954 LL 955
LL
Sbjct: 128 LL 129
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 105 bits (264), Expect = 1e-24
Identities = 105/366 (28%), Positives = 164/366 (44%), Gaps = 75/366 (20%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-----DCSEEINLLRACQG--HPNIVNLH 437
+LG G++ EK+TG+ YA+KI+ +++ + + + R Q HP + L
Sbjct: 2 LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALK 61
Query: 438 CVFQDEVHTYLVLELLKGGEL---LDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS-RG 493
FQ V+E GGEL L R R F+E+ A ++V+A+ ++HS +
Sbjct: 62 YSFQTHDRLCFVMEYANGGELFFHLSRERV-----FSEDRARFYGAEIVSALDYLHSEKN 116
Query: 494 VVHRDLKPENLLFSDPAGDNIKVVDFGF---ACLKRESLHTPCFTLQYAAPEVLRQDKSG 550
VV+RDLK ENL+ D G +IK+ DFG ++ T C T +Y APEVL +
Sbjct: 117 VVYRDLKLENLML-DKDG-HIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDND-- 172
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSI 610
Y D W LGV++Y M+CGR+PF+ ++D L
Sbjct: 173 ------------------------YGRAVDWWGLGVVMYEMMCGRLPFY--NQDHEKLFE 206
Query: 611 MARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI--------RMMRVKLTFHAFH 662
+ ++E +F T+S EAK L LL +P QR+ +M+ H F
Sbjct: 207 LILMEEIRFP------RTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ-----HKFF 255
Query: 663 QAQKEGFRLQDVTSAKLAQRRKNKNVSNDNSRSFSS--TSSSLSSSSSGT-SSLKTPCSS 719
G QDV KL K + S ++R F T+ ++ + S++T +
Sbjct: 256 A----GIVWQDVYEKKLVPPFKPQVTSETDTRYFDEEFTAQMITITPPDQDDSMETVDNE 311
Query: 720 TQPSVP 725
+P P
Sbjct: 312 RRPHFP 317
Score = 88.5 bits (219), Expect = 7e-19
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 221 EVIDWDDFSRGIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILKTEPPIPEDLSPD 280
EV++ +D+ R ++ ++ + ++ L F + + + IL E P LSP+
Sbjct: 166 EVLEDNDYGRAVDWWGLG---VVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPE 222
Query: 281 VADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDV 340
+S LL KDP++RLGGG DA+E+ +H FF I W D+ K++ PF P++++E D
Sbjct: 223 AKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVWQDVYEKKLVPPFKPQVTSETDT 282
Query: 341 SNFSDEFTKMIPADSPAIVPPNFDKIFKG 369
F +EFT A I PP+ D +
Sbjct: 283 RYFDEEFT----AQMITITPPDQDDSMET 307
Score = 42.3 bits (99), Expect = 8e-04
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 17/97 (17%)
Query: 867 TLFEEQLLGPITRARRRTFVNRSRYNVHTY----LVLELLKGGEL---LDRIRQKGRCGF 919
TL E ++L + R F+ +Y+ T+ V+E GGEL L R R F
Sbjct: 42 TLTENRVL----QNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV-----F 92
Query: 920 TENEASRIMRQLVAAVHFMHS-RGVVHRDLKPENLLL 955
+E+ A ++V+A+ ++HS + VV+RDLK ENL+L
Sbjct: 93 SEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLML 129
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 104 bits (261), Expect = 1e-24
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 15/193 (7%)
Query: 384 GILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-----DCSEEINLLRACQGHPNIVNLHC 438
G LGDG++ + K TG A KII + D EI++L C+ HPNIV L+
Sbjct: 11 GELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECK-HPNIVGLYE 69
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
+ E ++++E GG L D I + G TE + + RQ++ A++F+HS V+HRD
Sbjct: 70 AYFYENKLWILIEFCDGGAL-DSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRD 128
Query: 499 LKPENLLFSDPAGDNIKVVDFGF-ACLKRE--SLHTPCFTLQYAAPEVL--RQDKSG-YD 552
LK N+L + ++K+ DFG A K T T + APEV+ K YD
Sbjct: 129 LKAGNILLT--LDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYD 186
Query: 553 ENCDLWSLGVILV 565
D+WSLG+ L+
Sbjct: 187 YKADIWSLGITLI 199
Score = 50.1 bits (120), Expect = 2e-06
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++++E GG L D I + G TE + + RQ++ A++F+HS V+HRDLK N+LL
Sbjct: 78 WILIEFCDGGAL-DSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILL 136
Query: 956 S 956
+
Sbjct: 137 T 137
Score = 42.0 bits (99), Expect = 0.001
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 265 RILKTEPPI---PEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVID 317
+ILK+EPP P S DF+ LVKDP R A EL +HPF +
Sbjct: 219 KILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDR-----PTAAELLKHPFVSDQS 269
Score = 33.2 bits (76), Expect = 0.50
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 122 GILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-----DCSEEINLLRACQGHPNI 171
G LGDG++ + K TG A KII + D EI++L C+ HPNI
Sbjct: 11 GELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECK-HPNI 64
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 104 bits (263), Expect = 1e-24
Identities = 82/297 (27%), Positives = 124/297 (41%), Gaps = 53/297 (17%)
Query: 381 DKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE-----------EINLLRACQG 429
+K LG+G+Y+V + +K TG+ A+K I + + E EI LL+ +
Sbjct: 3 EKGKKLGEGTYAVVYKARDKETGRIVAIKKI-KLGERKEAKDGINFTALREIKLLQELK- 60
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
HPNI+ L VF + + LV E + +L I+ K T + M + + ++
Sbjct: 61 HPNIIGLLDVFGHKSNINLVFEFM-ETDLEKVIKDK-SIVLTPADIKSYMLMTLRGLEYL 118
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACL----KRESLHTPCFTLQYAAPEVLR 545
HS ++HRDLKP NLL G +K+ DFG A R+ H T Y APE+L
Sbjct: 119 HSNWILHRDLKPNNLLI-ASDGV-LKLADFGLARSFGSPNRKMTHQ-VVTRWYRAPELLF 175
Query: 546 QDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVIL-------------YTML 592
+ Y D+WS+G I +L + + D+ LG I T L
Sbjct: 176 GARH-YGVGVDMWSVGCIFAELLLR-VPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSL 233
Query: 593 CGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
V F + S +A +L + LLT+NP +RI
Sbjct: 234 PDYVEFKPF----PPTPLKQIF------------PAASDDALDLLQRLLTLNPNKRI 274
Score = 47.6 bits (114), Expect = 2e-05
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 892 NVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPE 951
N++ LV E + +L I+ K T + M + + ++HS ++HRDLKP
Sbjct: 76 NIN--LVFEFM-ETDLEKVIKDK-SIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPN 131
Query: 952 NLLLS 956
NLL++
Sbjct: 132 NLLIA 136
Score = 32.5 bits (75), Expect = 0.96
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 13/53 (24%)
Query: 177 EKSTGQEYAVKIISRKIDCSE-----------EINLLRACQGHPNIVNLHCVF 218
+K TG+ A+K I + + E EI LL+ + HPNI+ L VF
Sbjct: 21 DKETGRIVAIKKI-KLGERKEAKDGINFTALREIKLLQELK-HPNIIGLLDVF 71
Score = 31.8 bits (73), Expect = 1.6
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 119 DKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE-----------EINLLRACQG 167
+K LG+G+Y+V + +K TG+ A+K I + + E EI LL+ +
Sbjct: 3 EKGKKLGEGTYAVVYKARDKETGRIVAIKKI-KLGERKEAKDGINFTALREIKLLQELK- 60
Query: 168 HPNI 171
HPNI
Sbjct: 61 HPNI 64
>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
aPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. aPKCs only require
phosphatidylserine (PS) for activation. They contain a
C2-like region, instead of a calcium-binding (C2) region
found in classical PKCs, in their regulatory domain.
There are two aPKC isoforms, zeta and iota. aPKCs are
involved in many cellular functions including
proliferation, migration, apoptosis, polarity
maintenance and cytoskeletal regulation. They also play
a critical role in the regulation of glucose metabolism
and in the pathogenesis of type 2 diabetes.
Length = 329
Score = 105 bits (263), Expect = 2e-24
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 47/228 (20%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK-------ID-CSEEINLLRACQGHPNIVNL 436
++G GSY+ K T + YA+K+I ++ ID E ++ HP +V L
Sbjct: 2 VIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
H FQ E + V+E + GG+L+ ++++ + E A ++ A++F+H RG+++
Sbjct: 62 HSCFQTESRLFFVIEFVSGGDLMFHMQRQRK--LPEEHARFYSAEISLALNFLHERGIIY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRESLH------TPCFTLQYAAPEVLRQDKSG 550
RDLK +N+L D G +IK+ D+G +E + T C T Y APE+LR +
Sbjct: 120 RDLKLDNVLL-DAEG-HIKLTDYGMC---KEGIRPGDTTSTFCGTPNYIAPEILRGED-- 172
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPF 598
Y + D W+LGV+++ M+ GR PF
Sbjct: 173 ------------------------YGFSVDWWALGVLMFEMMAGRSPF 196
Score = 65.6 bits (160), Expect = 3e-11
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLG----GGELDAEELKRHPFFNVIDW 318
++ IL+ + IP LS + + L KDP+ RLG G D +K HPFF IDW
Sbjct: 214 FQVILEKQIRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRD---IKSHPFFRNIDW 270
Query: 319 DDLATKRIPAPFVPKISNELDVSNFSDEFTKMIPADSP 356
D L K++ P+ P I ++ D+ NF +FT +P
Sbjct: 271 DLLEQKQVLPPYKPNIESDRDLDNFDPQFTDEPVQLTP 308
Score = 46.7 bits (111), Expect = 3e-05
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+ V+E + GG+L+ ++++ + E A ++ A++F+H RG+++RDLK +N+LL
Sbjct: 72 FFVIEFVSGGDLMFHMQRQRK--LPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLL 129
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) beta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 105 bits (262), Expect = 2e-24
Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 46/278 (16%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISR-------KIDC-SEEINLLRA--CQ 428
D + ++G G++ K T + YA+KI+++ + C EE N+L CQ
Sbjct: 2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQ 61
Query: 429 GHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHF 488
I LH FQDE + YLV++ GG+LL + K E+ A + ++V A+H
Sbjct: 62 W---ITTLHYAFQDENYLYLVMDYYVGGDLLTLL-SKFEDRLPEDMARFYIAEMVLAIHS 117
Query: 489 MHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHT-----PCFTLQYAAPEV 543
+H VHRD+KP+N+L D G +I++ DFG +CLK T T Y +PE+
Sbjct: 118 IHQLHYVHRDIKPDNVLL-DMNG-HIRLADFG-SCLKMNQDGTVQSSVAVGTPDYISPEI 174
Query: 544 LRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSR 603
L+ + G + Y CD WSLGV +Y ML G PF+A S
Sbjct: 175 LQAMEDGMGK---------------------YGPECDWWSLGVCMYEMLYGETPFYAESL 213
Query: 604 DDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLL 641
++ IM E +F F + + VS EAK+L + L+
Sbjct: 214 VETYGKIMNH--EERFQFPSHI-TDVSEEAKDLIQRLI 248
Score = 60.8 bits (147), Expect = 1e-09
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 231 GIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILKTE-----PPIPEDLSPDVADFI 285
G EC ++S + ++ ++ T F + Y +I+ E P D+S + D I
Sbjct: 186 GPECDWWSLGVCMYEMLYGET-PFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLI 244
Query: 286 SRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDVSNF-- 343
RL+ RR G+ E+ K+H FF IDW+++ + + AP++P +S+ D SNF
Sbjct: 245 QRLICSRERRL---GQNGIEDFKKHAFFEGIDWENI--RNLEAPYIPDVSSPSDTSNFDV 299
Query: 344 SDEFTKMIPADSPAIVPPNFDKIFKG 369
D+ + +P I PP+ F G
Sbjct: 300 DDDVLR-----NPEIAPPSSHTGFSG 320
Score = 44.6 bits (105), Expect = 2e-04
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+ YLV++ GG+LL + K E+ A + ++V A+H +H VHRD+KP+N+
Sbjct: 75 YLYLVMDYYVGGDLLTLL-SKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNV 133
Query: 954 LL 955
LL
Sbjct: 134 LL 135
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 104 bits (261), Expect = 3e-24
Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 30/206 (14%)
Query: 381 DKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRK-------IDCSEEINLLRACQGHPNI 433
+K +G+G+Y + R + ++G+ A+K + I EI LL + HPNI
Sbjct: 10 EKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLR-HPNI 68
Query: 434 VNLHCVFQ----DEVHTYLVLELLKG--GELLDRIRQKGRCGFTENEASRIMRQLVAAVH 487
V L V D + +LV+E + LLD + F+E++ +M QL+ +
Sbjct: 69 VELKEVVVGKHLDSI--FLVMEYCEQDLASLLDNMP----TPFSESQVKCLMLQLLRGLQ 122
Query: 488 FMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLH----TPCF-TLQYAAPE 542
++H ++HRDLK NLL +D +K+ DFG A + L TP TL Y APE
Sbjct: 123 YLHENFIIHRDLKVSNLLLTD--KGCLKIADFGLA--RTYGLPAKPMTPKVVTLWYRAPE 178
Query: 543 VLRQDKSGYDENCDLWSLGVILVNVL 568
+L + Y D+W++G IL +L
Sbjct: 179 LLLGCTT-YTTAIDMWAVGCILAELL 203
Score = 50.4 bits (121), Expect = 2e-06
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 919 FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
F+E++ +M QL+ + ++H ++HRDLK NLLL+
Sbjct: 105 FSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTD 143
Score = 31.2 bits (71), Expect = 2.8
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 119 DKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRK-------IDCSEEINLLRACQGHPNI 171
+K +G+G+Y + R + ++G+ A+K + I EI LL + HPNI
Sbjct: 10 EKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLR-HPNI 68
Query: 172 CR 173
Sbjct: 69 VE 70
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 102 bits (256), Expect = 4e-24
Identities = 72/287 (25%), Positives = 113/287 (39%), Gaps = 66/287 (22%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKII-----SRKI--DCSEEINLLRACQGHPNIVNLHC 438
+G G++ V TG+ AVK I K + ++E+ +L + HPN+V +
Sbjct: 8 IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLK-HPNLVKYYG 66
Query: 439 VFQDEVH---TYLVLELLKGGELLDRIRQKGRCGFTENEA--SRIMRQLVAAVHFMHSRG 493
V EVH Y+ +E GG L + + G +E QL+ + ++HS G
Sbjct: 67 V---EVHREKVYIFMEYCSGGTLEELLEH----GRILDEHVIRVYTLQLLEGLAYLHSHG 119
Query: 494 VVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLH-TPCF--------TLQYAAPEVL 544
+VHRD+KP N+ IK+ DFG C + + T T Y APEV+
Sbjct: 120 IVHRDIKPANIFLDH--NGVIKLGDFG--CAVKLKNNTTTMGEEVQSLAGTPAYMAPEVI 175
Query: 545 RQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRD 604
K G+ D+WSLG ++ M G+ P+
Sbjct: 176 TGGKG-----------------------KGHGRAADIWSLGCVVLEMATGKRPWS---EL 209
Query: 605 DSALSIMARIKEG---QFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
D+ IM + G + +S E K+ L +P +R
Sbjct: 210 DNEFQIMFHVGAGHKPPIPDSLQ----LSPEGKDFLDRCLESDPKKR 252
Score = 46.9 bits (112), Expect = 2e-05
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 900 ELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
ELL+ G +LD E+ QL+ + ++HS G+VHRD+KP N+ L
Sbjct: 88 ELLEHGRILD-----------EHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFL 132
Score = 42.3 bits (100), Expect = 6e-04
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 253 SFIHDYYHIQYRRILKTEPPIPE--DLSPDVADFISRLLVKDPRRRLGGGELDAEELKRH 310
S + + + I + +PPIP+ LSP+ DF+ R L DP++R A EL +H
Sbjct: 207 SELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKR-----PTASELLQH 261
Query: 311 PF 312
PF
Sbjct: 262 PF 263
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 103 bits (259), Expect = 4e-24
Identities = 79/285 (27%), Positives = 129/285 (45%), Gaps = 55/285 (19%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-------DCSE-EINLLRACQGH 430
D + +LG GS+ K T + YA+KI+ + + +C+ E +L
Sbjct: 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKP 60
Query: 431 PNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
P + LH FQ Y V+E + GG+L+ I+Q G+ F E +A ++ + F+H
Sbjct: 61 PFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGK--FKEPQAVFYAAEISVGLFFLH 118
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL------HTPCFTLQYAAPEVL 544
RG+++RDLK +N++ D G +IK+ DFG +E + T C T Y APE++
Sbjct: 119 RRGIIYRDLKLDNVML-DSEG-HIKIADFGMC---KEHMVDGVTTRTFCGTPDYIAPEII 173
Query: 545 RQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRD 604
Y ++ D W+ GV+LY ML G+ PF D
Sbjct: 174 AYQP--------------------------YGKSVDWWAYGVLLYEMLAGQPPFDGEDED 207
Query: 605 DSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ SIM + ++S EA + K L+T +P++R+
Sbjct: 208 ELFQSIMEH--------NVSYPKSLSKEAVSICKGLMTKHPSKRL 244
Score = 60.8 bits (147), Expect = 9e-10
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
++ I++ P+ LS + L+ K P +RLG G +++ H FF IDWD L
Sbjct: 210 FQSIMEHNVSYPKSLSKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRIDWDKLE 269
Query: 323 TKRIPAPFVPKISNELDVSNFSDEFTKMIPADSPA--IVPPNFDK 365
+ I PF PK+ + NF FT+ P +P +V N D+
Sbjct: 270 NREIQPPFKPKVCGK-GAENFDKFFTRGQPVLTPPDQLVIANIDQ 313
Score = 48.5 bits (115), Expect = 1e-05
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y V+E + GG+L+ I+Q G+ F E +A ++ + F+H RG+++RDLK +N++L
Sbjct: 77 YFVMEYVNGGDLMYHIQQVGK--FKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVML 134
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 104 bits (260), Expect = 4e-24
Identities = 75/219 (34%), Positives = 106/219 (48%), Gaps = 38/219 (17%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
HP VNL+ F+DE + YLVLE + GGE +R+ R F + Q+V ++
Sbjct: 90 HPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRNKR--FPNDVGCFYAAQIVLIFEYL 147
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKS 549
S +V+RDLKPENLL D G IK+ DFGFA + +T C T +Y APE
Sbjct: 148 QSLNIVYRDLKPENLLL-DKDG-FIKMTDFGFAKVVDTRTYTLCGTPEYIAPE------- 198
Query: 550 GYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALS 609
IL+NV G+ + D W+LG+ +Y +L G PF+A + L
Sbjct: 199 -------------ILLNV------GHGKAADWWTLGIFIYEILVGCPPFYA----NEPLL 235
Query: 610 IMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
I +I EG F + + K L K LL+ + +R
Sbjct: 236 IYQKILEGIIYFP----KFLDNNCKHLMKKLLSHDLTKR 270
Score = 56.5 bits (136), Expect = 2e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
Y++IL+ P+ L + + +LL D +R G + A+ +K HP+F IDW L
Sbjct: 237 YQKILEGIIYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDWVSLL 296
Query: 323 TKRIPAPFVPKISNELDVSNF 343
K + P+ PK N D SNF
Sbjct: 297 HKNVEVPYKPKYKNVFDSSNF 317
Score = 47.3 bits (112), Expect = 3e-05
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+ YLVLE + GGE +R+ R F + Q+V ++ S +V+RDLKPENL
Sbjct: 105 YLYLVLEFVIGGEFFTFLRRNKR--FPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENL 162
Query: 954 LL 955
LL
Sbjct: 163 LL 164
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 103 bits (259), Expect = 5e-24
Identities = 74/228 (32%), Positives = 107/228 (46%), Gaps = 41/228 (17%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNL 436
++G GS+ K G+ YAVK++ +KI + E N+L HP +V L
Sbjct: 2 VIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
H FQ Y VL+ + GGEL + Q+ R F E A ++ +A+ ++HS +V+
Sbjct: 62 HYSFQTTEKLYFVLDFVNGGELFFHL-QRERS-FPEPRARFYAAEIASALGYLHSINIVY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGF---ACLKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLKPEN+L D G ++ + DFG + ++ T C T +Y APEV+R
Sbjct: 120 RDLKPENILL-DSQG-HVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIR-------- 169
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHAR 601
K YD D W LG +LY ML G PF+ R
Sbjct: 170 ------------------KQPYDNTVDWWCLGAVLYEMLYGLPPFYCR 199
Score = 68.5 bits (167), Expect = 3e-12
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 260 HIQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWD 319
Y IL + S + LL KD +RRLG E D E++ HPFF + W
Sbjct: 202 AEMYDNILHKPLVLRPGASLTAWSILEELLEKDRQRRLGAKE-DFLEIQEHPFFESLSWT 260
Query: 320 DLATKRIPAPFVPKISNELDVSNFSDEFTK 349
DL K+IP PF P + D+SNF FT+
Sbjct: 261 DLEQKKIPPPFNPNVEGPDDISNFDAVFTE 290
Score = 48.5 bits (115), Expect = 9e-06
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y VL+ + GGEL + Q+ R F E A ++ +A+ ++HS +V+RDLKPEN+LL
Sbjct: 72 YFVLDFVNGGELFFHL-QRERS-FPEPRARFYAAEIASALGYLHSINIVYRDLKPENILL 129
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 103 bits (258), Expect = 5e-24
Identities = 81/274 (29%), Positives = 128/274 (46%), Gaps = 48/274 (17%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVK------IISR-KIDCSEEINLLRACQGHPNIVNLHC 438
+G GS+ + ++ T + YA+K I+SR ++ + + A P IV L
Sbjct: 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKF 60
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
FQ YLVL + GGEL ++++GR F + A +L+ A+ +H V++RD
Sbjct: 61 SFQSPEKLYLVLAFINGGELFHHLQREGR--FDLSRARFYTAELLCALENLHKFNVIYRD 118
Query: 499 LKPENLLFSDPAGDNIKVVDFGFACL---KRESLHTPCFTLQYAAPEVLRQDKSGYDENC 555
LKPEN+L D G +I + DFG L + +T C T +Y APE+L G+
Sbjct: 119 LKPENILL-DYQG-HIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELL----LGH---- 168
Query: 556 DLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIK 615
GY + D W+LGV+LY ML G PF+ D++ + +I
Sbjct: 169 ------------------GYTKAVDWWTLGVLLYEMLTGLPPFY----DENVNEMYRKIL 206
Query: 616 EGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ F +AK+L LL+ +P +R+
Sbjct: 207 QEPLRFP----DGFDRDAKDLLIGLLSRDPTRRL 236
Score = 90.8 bits (225), Expect = 9e-20
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
YR+IL+ P+ D D + LL +DP RRLG A+E+K HPFF+ + W L
Sbjct: 202 YRKILQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYN--GAQEIKNHPFFSQLSWKKLL 259
Query: 323 TKRIPAPFVPKISNELDVSNFSDEFTKMIPADS 355
K I PF P +S+ +D SNF +EFT+ P DS
Sbjct: 260 MKGIQPPFKPAVSSAIDTSNFDEEFTREKPIDS 292
Score = 53.4 bits (128), Expect = 2e-07
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLVL + GGEL ++++GR F + A +L+ A+ +H V++RDLKPEN+LL
Sbjct: 69 YLVLAFINGGELFHHLQREGR--FDLSRARFYTAELLCALENLHKFNVIYRDLKPENILL 126
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 101 bits (255), Expect = 6e-24
Identities = 68/263 (25%), Positives = 121/263 (46%), Gaps = 46/263 (17%)
Query: 388 DGSY---SVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDEV 444
DG + SV + K T + + KII K + E + + + +PN + L+
Sbjct: 26 DGKFGKVSVLKH---KPTQKLFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTTLK 82
Query: 445 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 504
L+++ +K G+L D ++++G+ +E E +I+RQLV A++ +H ++H D+K EN+
Sbjct: 83 GHVLIMDYIKDGDLFDLLKKEGK--LSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENV 140
Query: 505 LFSDPAGDNIKVVDFGFACLKRESLHTPCF---TLQYAAPEVLRQDKSGYDENCDLWSLG 561
L+ D A D I + D+G K TP TL Y +PE ++
Sbjct: 141 LY-DRAKDRIYLCDYGLC--KII--GTPSCYDGTLDYFSPEKIK---------------- 179
Query: 562 VILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIKEGQFNF 621
YD + D W++GV+ Y +L G+ PF ++ L + + ++ + F
Sbjct: 180 ----------GHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPF 229
Query: 622 DAEAWSTVSSEAKELTKSLLTVN 644
VS A + +S+L N
Sbjct: 230 I----KNVSKNANDFVQSMLKYN 248
Score = 58.3 bits (142), Expect = 4e-09
Identities = 24/68 (35%), Positives = 45/68 (66%), Gaps = 6/68 (8%)
Query: 891 YNVHT----YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 946
Y+V T L+++ +K G+L D ++++G+ +E E +I+RQLV A++ +H ++H
Sbjct: 76 YSVTTLKGHVLIMDYIKDGDLFDLLKKEGK--LSEAEVKKIIRQLVEALNDLHKHNIIHN 133
Query: 947 DLKPENLL 954
D+K EN+L
Sbjct: 134 DIKLENVL 141
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 103 bits (258), Expect = 7e-24
Identities = 82/276 (29%), Positives = 125/276 (45%), Gaps = 49/276 (17%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNL 436
++G GS+ K+ + YAVK++ +K + E N+L HP +V L
Sbjct: 2 VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
H FQ Y VL+ + GGEL + Q+ RC F E A ++ +A+ ++HS +V+
Sbjct: 62 HFSFQTADKLYFVLDYINGGELFYHL-QRERC-FLEPRARFYAAEIASALGYLHSLNIVY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRE---SLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLKPEN+L D G +I + DFG E + T C T +Y APEVL
Sbjct: 120 RDLKPENILL-DSQG-HIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLH-------- 169
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
K YD D W LG +LY ML G PF++R+ A
Sbjct: 170 ------------------KQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN--------TAE 203
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ + N + +++ A+ L + LL + +R+
Sbjct: 204 MYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRL 239
Score = 60.8 bits (147), Expect = 1e-09
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 274 PEDLSPDVAD----FISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAP 329
P L P++ + + LL KD +RLG + D E+K H FF+ I+WDDL K+I P
Sbjct: 212 PLQLKPNITNSARHLLEGLLQKDRTKRLGAKD-DFMEIKNHIFFSPINWDDLINKKITPP 270
Query: 330 FVPKISNELDVSNFSDEFTK 349
F P +S D+ +F EFT+
Sbjct: 271 FNPNVSGPNDLRHFDPEFTE 290
Score = 50.8 bits (121), Expect = 2e-06
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y VL+ + GGEL + Q+ RC F E A ++ +A+ ++HS +V+RDLKPEN+LL
Sbjct: 72 YFVLDYINGGELFYHL-QRERC-FLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILL 129
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 101 bits (253), Expect = 8e-24
Identities = 68/277 (24%), Positives = 120/277 (43%), Gaps = 54/277 (19%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS-------RKIDCSEEINLLRACQGHPNIVNLHC 438
+G GS+ V + V K+ + YA+K I + + +E +L A I+ +
Sbjct: 8 IGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVL-AKLDSSYIIRYYE 66
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
F D+ +V+E + G+L ++ + E++ R Q++ + +HS+ ++HRD
Sbjct: 67 SFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRD 126
Query: 499 LKPENLLFSDPAGDNIKVVDFGFA-------CLKRESLHTPCFTLQYAAPEVLRQDKSGY 551
+K NL A DN+K+ D G A + TP Y +PE L +DK
Sbjct: 127 IKSLNLFLD--AYDNVKIGDLGVAKLLSDNTNFANTIVGTP----YYLSPE-LCEDKP-- 177
Query: 552 DENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIM 611
Y+E D+W+LGV+LY G+ PF A ++ +++
Sbjct: 178 -----------------------YNEKSDVWALGVVLYECCTGKHPFDA----NNQGALI 210
Query: 612 ARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+I G F ++ + S + +L LT + QR
Sbjct: 211 LKIIRGVFPPVSQMY---SQQLAQLIDQCLTKDYRQR 244
Score = 44.4 bits (105), Expect = 1e-04
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+V+E + G+L ++ + E++ R Q++ + +HS+ ++HRD+K NL L
Sbjct: 75 NIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFL 134
Query: 956 S 956
Sbjct: 135 D 135
Score = 34.0 bits (78), Expect = 0.25
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 264 RRILKTE-PPIPEDLSPDVADFISRLLVKDPRRR 296
+I++ PP+ + S +A I + L KD R+R
Sbjct: 211 LKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQR 244
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 101 bits (253), Expect = 1e-23
Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 27/193 (13%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE-------EINLLRACQGHPNIVNLHC 438
+G G+Y + + +TG+ A+K+I K++ + EI++L+ C+ HPNIV
Sbjct: 11 IGSGTYGDVYKARDIATGELVAIKVI--KLEPGDDFEIIQQEISMLKECR-HPNIVAYFG 67
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
+ ++V+E GG L D I Q R +E + + + R+ + + ++H G +HRD
Sbjct: 68 SYLRRDKLWIVMEYCGGGSLQD-IYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRD 126
Query: 499 LKPENLLFSDPAGDNIKVVDFGFACL------KRESLHTPCF--TLQYAAPEVLR-QDKS 549
+K N+L ++ GD +K+ DFG + KR+S F T + APEV + K
Sbjct: 127 IKGANILLTE-DGD-VKLADFGVSAQLTATIAKRKS-----FIGTPYWMAPEVAAVERKG 179
Query: 550 GYDENCDLWSLGV 562
GYD CD+W+LG+
Sbjct: 180 GYDGKCDIWALGI 192
Score = 42.7 bits (101), Expect = 5e-04
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V+E GG L D I Q R +E + + + R+ + + ++H G +HRD+K N+LL
Sbjct: 76 WIVMEYCGGGSLQD-IYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILL 134
Query: 956 S 956
+
Sbjct: 135 T 135
Score = 36.9 bits (86), Expect = 0.037
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 278 SPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
SP DFI + L KDP++R A +L +HPF
Sbjct: 233 SPVFHDFIKKCLTKDPKKR-----PTATKLLQHPF 262
Score = 33.0 bits (76), Expect = 0.58
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 10/57 (17%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE-------EINLLRACQGHPNICR 173
+G G+Y + + +TG+ A+K+I K++ + EI++L+ C+ HPNI
Sbjct: 11 IGSGTYGDVYKARDIATGELVAIKVI--KLEPGDDFEIIQQEISMLKECR-HPNIVA 64
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 101 bits (254), Expect = 3e-23
Identities = 84/294 (28%), Positives = 135/294 (45%), Gaps = 49/294 (16%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKII------SRKIDCSEEINLLRACQGHPN 432
+L++ +G G+ + + + TG+ YA+K+I + + EI +LR HPN
Sbjct: 75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVN-HPN 133
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+V H +F ++LE + GG L +G E + + RQ+++ + ++H R
Sbjct: 134 VVKCHDMFDHNGEIQVLLEFMDGGSL------EGTHIADEQFLADVARQILSGIAYLHRR 187
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF----TLQYAAPEVLRQDK 548
+VHRD+KP NLL + + N+K+ DFG + + +++ PC T+ Y +PE +
Sbjct: 188 HIVHRDIKPSNLLIN--SAKNVKIADFGVSRILAQTM-DPCNSSVGTIAYMSPERI---- 240
Query: 549 SGYDENCDLWSLGVILVNVLRQDKSGYDENC-DLWSLGVILYTMLCGRVPFHARSRDDSA 607
N DL + YD D+WSLGV + GR PF + D A
Sbjct: 241 -----NTDL-------------NHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWA 282
Query: 608 LSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRIRMMRVKLTFHAF 661
S+M I Q EA +T S E + L PA+R M+ L H F
Sbjct: 283 -SLMCAICMSQ---PPEAPATASREFRHFISCCLQREPAKRWSAMQ--LLQHPF 330
Score = 48.7 bits (116), Expect = 1e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
++LE + GG L +G E + + RQ+++ + ++H R +VHRD+KP NLL++
Sbjct: 149 VLLEFMDGGSL------EGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLIN 202
Query: 957 GISGNLIKI 965
S +KI
Sbjct: 203 --SAKNVKI 209
Score = 34.4 bits (79), Expect = 0.24
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 266 ILKTEPP-IPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
I ++PP P S + FIS L ++P +R A +L +HPF
Sbjct: 288 ICMSQPPEAPATASREFRHFISCCLQREPAKR-----WSAMQLLQHPF 330
Score = 31.7 bits (72), Expect = 1.7
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 117 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKII------SRKIDCSEEINLLRACQGHPN 170
+L++ +G G+ + + + TG+ YA+K+I + + EI +LR HPN
Sbjct: 75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVN-HPN 133
Query: 171 ICR 173
+ +
Sbjct: 134 VVK 136
Score = 30.2 bits (68), Expect = 5.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 176 VEKSTGQEYAVKII------SRKIDCSEEINLLRACQGHPNIVNLHCVFQ 219
+ + TG+ YA+K+I + + EI +LR HPN+V H +F
Sbjct: 94 IHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVN-HPNVVKCHDMFD 142
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 1. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK1 is preferentially expressed in the liver,
lung, spleen, testes, and kidney. It mediates signaling
from Rho to the actin cytoskeleton. It is implicated in
the development of cardiac fibrosis, cardiomyocyte
apoptosis, and hyperglycemia. Mice deficient with ROCK1
display eyelids open at birth (EOB) and omphalocele
phenotypes due to the disorganization of actin filaments
in the eyelids and the umbilical ring.
Length = 371
Score = 101 bits (253), Expect = 5e-23
Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 48/278 (17%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISR-----KIDCS---EEINLLRACQGH 430
D + ++G G++ + KST + YA+K++S+ + D + EE +++ A
Sbjct: 44 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIM-AFANS 102
Query: 431 PNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
P +V L FQD+ + Y+V+E + GG+L++ + E A ++V A+ +H
Sbjct: 103 PWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD---VPEKWARFYTAEVVLALDAIH 159
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLK--RESL---HTPCFTLQYAAPEVLR 545
S G +HRD+KP+N+L D +G ++K+ DFG C+K +E + T T Y +PEVL+
Sbjct: 160 SMGFIHRDVKPDNMLL-DKSG-HLKLADFG-TCMKMNKEGMVRCDTAVGTPDYISPEVLK 216
Query: 546 -QDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRD 604
Q GY Y CD WS+GV LY ML G PF+A S
Sbjct: 217 SQGGDGY-----------------------YGRECDWWSVGVFLYEMLVGDTPFYADSLV 253
Query: 605 DSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLT 642
+ IM F D + +S EAK L + LT
Sbjct: 254 GTYSKIMNHKNSLTFPDD----NDISKEAKNLICAFLT 287
Score = 53.1 bits (127), Expect = 4e-07
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 231 GIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILKTEP----PIPEDLSPDVADFIS 286
G EC ++S + ++ +++ T F D Y +I+ + P D+S + + I
Sbjct: 225 GRECDWWSVGVFLYEMLVGDT-PFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLIC 283
Query: 287 RLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDVSNFSD 345
L D RLG ++ E+KRH FF W + AP VP +S+++D SNF D
Sbjct: 284 AFLT-DREVRLGRNGVE--EIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDD 339
Score = 41.2 bits (96), Expect = 0.002
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+ Y+V+E + GG+L++ + E A ++V A+ +HS G +HRD+KP+N+
Sbjct: 117 YLYMVMEYMPGGDLVNLMSNYD---VPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNM 173
Query: 954 LLSGISGNL 962
LL SG+L
Sbjct: 174 LLDK-SGHL 181
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 100 bits (252), Expect = 6e-23
Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 39/205 (19%)
Query: 385 ILGDGSY-SVCRRCVEKSTGQEYAVKIISR----KIDCSE---EINLLRACQGHPNIVNL 436
+G G+Y VC V+K TG++ A+K IS ID EI LLR + H NI+ L
Sbjct: 7 PIGSGAYGVVCS-AVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLR-HENIIGL 64
Query: 437 HCVFQDEV-----HTYLVLELLKGGEL-LDR-IRQKGRCGFTENEASRIMRQLVAAVHFM 489
+ + Y+V EL+ E L + I+ T++ + Q++ + ++
Sbjct: 65 LDILRPPSPEDFNDVYIVTELM---ETDLHKVIKSPQP--LTDDHIQYFLYQILRGLKYL 119
Query: 490 HSRGVVHRDLKPENLLFSDPAGD-NIKVVDFGFACLKRESLHTPCFTLQ---------YA 539
HS V+HRDLKP N+L + + ++K+ DFG A R Y
Sbjct: 120 HSANVIHRDLKPSNILVNS---NCDLKICDFGLA---RGVDPDEDEKGFLTEYVVTRWYR 173
Query: 540 APEVLRQDKSGYDENCDLWSLGVIL 564
APE+L Y + D+WS+G I
Sbjct: 174 APELLLSSS-RYTKAIDIWSVGCIF 197
Score = 50.2 bits (121), Expect = 2e-06
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 927 IMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+ Q++ + ++HS V+HRDLKP N+L+
Sbjct: 108 FLYQILRGLKYLHSANVIHRDLKPSNILV 136
Score = 41.7 bits (99), Expect = 0.001
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 261 IQYRRILKTEPPIP-EDL----SPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNV 315
Y + L +P P L SP+ D + ++LV DP++R + A+E HP+
Sbjct: 240 RNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKR-----ITADEALAHPYLAQ 294
Query: 316 I 316
+
Sbjct: 295 L 295
Score = 34.0 bits (79), Expect = 0.36
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 175 CVEKSTGQEYAVKIISR----KIDCSE---EINLLRACQGHPNIVNLHCVFQDEVIDWDD 227
V+K TG++ A+K IS ID EI LLR + H NI+ L + + +D
Sbjct: 19 AVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLR-HENIIGLLDILRPP--SPED 75
Query: 228 FS 229
F+
Sbjct: 76 FN 77
Score = 32.9 bits (76), Expect = 0.74
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 123 ILGDGSY-SVCRRCVEKSTGQEYAVKIISR----KIDCSE---EINLLRACQGHPNI 171
+G G+Y VC V+K TG++ A+K IS ID EI LLR + H NI
Sbjct: 7 PIGSGAYGVVCS-AVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLR-HENI 61
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 99.4 bits (248), Expect = 7e-23
Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 28/209 (13%)
Query: 374 EQYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE-------EINLLRA 426
E+Y+ G++G+GSY + +C K TGQ A+K D EI +L+
Sbjct: 1 EKYEN----LGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQ 56
Query: 427 CQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAV 486
+ H N+VNL VF+ + YLV E + +LD + +K G E+ + + Q++ +
Sbjct: 57 LR-HENLVNLIEVFRRKKRLYLVFEFVDH-TVLDDL-EKYPNGLDESRVRKYLFQILRGI 113
Query: 487 HFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTP-------CFTLQYA 539
F HS ++HRD+KPEN+L S +G +K+ DFGFA +L P T Y
Sbjct: 114 EFCHSHNIIHRDIKPENILVS-QSG-VVKLCDFGFA----RTLAAPGEVYTDYVATRWYR 167
Query: 540 APEVLRQDKSGYDENCDLWSLGVILVNVL 568
APE+L D Y D+W++G ++ +L
Sbjct: 168 APELLVGDTK-YGRAVDIWAVGCLVTEML 195
Score = 47.8 bits (114), Expect = 1e-05
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV E + +LD + +K G E+ + + Q++ + F HS ++HRD+KPEN+L+
Sbjct: 76 YLVFEFVDH-TVLDDL-EKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILV 133
Query: 956 S 956
S
Sbjct: 134 S 134
Score = 32.8 bits (75), Expect = 0.72
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
Query: 112 EQYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE-------EINLLRA 164
E+Y+ G++G+GSY + +C K TGQ A+K D EI +L+
Sbjct: 1 EKYEN----LGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQ 56
Query: 165 CQGHPN------ICRR 174
+ H N + RR
Sbjct: 57 LR-HENLVNLIEVFRR 71
>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and
Dbf2p-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), ROCK- and NDR-like
subfamily, fungal Sid2p- and Dbf2p-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sid2p- and
Dbf2p-like group is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This group contains fungal kinases including
Schizosaccharomyces pombe Sid2p and Saccharomyces
cerevisiae Dbf2p. Group members show similarity to NDR
kinases in that they contain an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Sid2p plays a
crucial role in the septum initiation network (SIN) and
in the initiation of cytokinesis. Dbf2p is important in
regulating the mitotic exit network (MEN) and in
cytokinesis.
Length = 333
Score = 100 bits (250), Expect = 1e-22
Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 47/261 (18%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKI--------DCSEEINLLRACQGHPNIVNLH 437
+G G Y +K TG+ A+K + + + E ++L + +V L
Sbjct: 9 VGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTK-SEWLVKLL 67
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 497
FQD+ + YL +E + GG+ + G +E+ A M ++ AV +H G +HR
Sbjct: 68 YAFQDDEYLYLAMEYVPGGDFRTLLNNLG--VLSEDHARFYMAEMFEAVDALHELGYIHR 125
Query: 498 DLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDL 557
DLKPEN L A +IK+ DFG + ++ + Y APEVLR
Sbjct: 126 DLKPENFLID--ASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLR------------ 171
Query: 558 WSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIM------ 611
GYD D WSLG +LY LCG PF + +++ ++
Sbjct: 172 --------------GKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETL 217
Query: 612 --ARIKEGQFNFDAEAWSTVS 630
+ +FN EAW ++
Sbjct: 218 QRPVYDDPRFNLSDEAWDLIT 238
Score = 64.0 bits (156), Expect = 1e-10
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 10/86 (11%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
+R + +P +LS + D I++L+ DP RR G E++K HPFF +DW++L
Sbjct: 218 QRPVYDDPRF--NLSDEAWDLITKLI-NDPSRRFGS----LEDIKNHPFFKEVDWNEL-- 268
Query: 324 KRIPAPFVPKISNELDVSNFSDEFTK 349
+ + PFVP++ +E+D F D+F
Sbjct: 269 RELKPPFVPELESEIDTGYF-DDFEN 293
Score = 48.2 bits (115), Expect = 1e-05
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+ YL +E + GG+ + G +E+ A M ++ AV +H G +HRDLKPEN
Sbjct: 75 YLYLAMEYVPGGDFRTLLNNLG--VLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENF 132
Query: 954 LLS 956
L+
Sbjct: 133 LID 135
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 98.5 bits (245), Expect = 2e-22
Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 27/212 (12%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEI----NLLRACQGHPNIVNLHCVFQ 441
+G G+Y + K G AVKI+ D EEI N+L++ HPN+V + +F
Sbjct: 30 IGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFY 89
Query: 442 DEVH-----TYLVLELLKGGELLDRIRQKGRCGFTENEA--SRIMRQLVAAVHFMHSRGV 494
+LVLEL GG + + ++ CG +EA S I+ + + +H+ +
Sbjct: 90 KADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRI 149
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGFAC------LKRE-SLHTPCFTLQYAAPEVL--- 544
+HRD+K N+L + G +K+VDFG + L+R S+ TP + APEV+
Sbjct: 150 IHRDVKGNNILLTTEGG--VKLVDFGVSAQLTSTRLRRNTSVGTPF----WMAPEVIACE 203
Query: 545 RQDKSGYDENCDLWSLGVILVNVLRQDKSGYD 576
+Q YD CD+WSLG+ + + D +D
Sbjct: 204 QQYDYSYDARCDVWSLGITAIELGDGDPPLFD 235
Score = 41.5 bits (97), Expect = 0.001
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEA--SRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+LVLEL GG + + ++ CG +EA S I+ + + +H+ ++HRD+K N+
Sbjct: 100 WLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNI 159
Query: 954 LLSGISG 960
LL+ G
Sbjct: 160 LLTTEGG 166
Score = 36.9 bits (85), Expect = 0.041
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEI----NLLRACQGHPNICR 173
+G G+Y + K G AVKI+ D EEI N+L++ HPN+ +
Sbjct: 30 IGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVK 83
Score = 33.8 bits (77), Expect = 0.39
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 174 RCVEKSTGQEYAVKIISRKIDCSEEI----NLLRACQGHPNIVNLHCVF 218
+ K G AVKI+ D EEI N+L++ HPN+V + +F
Sbjct: 40 KVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMF 88
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 98.2 bits (245), Expect = 2e-22
Identities = 69/193 (35%), Positives = 92/193 (47%), Gaps = 25/193 (12%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNLH 437
+G+G+Y V + +K TG+ A+K I R E EI+LL+ HPNIV L
Sbjct: 7 IGEGTYGVVYKARDKLTGEIVALKKI-RLETEDEGVPSTAIREISLLKELN-HPNIVRLL 64
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRI---MRQLVAAVHFMHSRGV 494
V E YLV E L LD + T + I + QL+ + + HS V
Sbjct: 65 DVVHSENKLYLVFEFLD----LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRV 120
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFG----FACLKRESLHTPCFTLQYAAPEVLRQDKSG 550
+HRDLKP+NLL D G +K+ DFG F R H TL Y APE+L +
Sbjct: 121 LHRDLKPQNLLI-DREG-ALKLADFGLARAFGVPVRTYTHE-VVTLWYRAPEILLGSRQ- 176
Query: 551 YDENCDLWSLGVI 563
Y D+WS+G I
Sbjct: 177 YSTPVDIWSIGCI 189
Score = 49.6 bits (119), Expect = 3e-06
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRI---MRQLVAAVHFMHSRGVVHRDLKPEN 952
YLV E L LD + T + I + QL+ + + HS V+HRDLKP+N
Sbjct: 74 YLVFEFLD----LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQN 129
Query: 953 LLLSGISGNL 962
LL+ G L
Sbjct: 130 LLID-REGAL 138
Score = 29.6 bits (67), Expect = 8.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 270 EPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
+P L D D +S++LV DP +R + A+ +HP+F
Sbjct: 246 SKVVPN-LDEDGLDLLSKMLVYDPAKR-----ISAKAALQHPYF 283
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 97.4 bits (243), Expect = 4e-22
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 26/204 (12%)
Query: 381 DKAGILGDGSYSVCRRCVEKSTGQEYAVK--------IISRKIDCSEEINLLRACQGHPN 432
+K +G+GSY V +C + TGQ A+K + +KI EI +L+ + HPN
Sbjct: 4 EKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKI-ALREIRMLKQLK-HPN 61
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+VNL VF+ + +LV E +L+ + + R G E+ +I+ Q + AV+F H
Sbjct: 62 LVNLIEVFRRKRKLHLVFEYCDH-TVLNELEKNPR-GVPEHLIKKIIWQTLQAVNFCHKH 119
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF-------TLQYAAPEVLR 545
+HRD+KPEN+L + IK+ DFGFA + L P T Y APE+L
Sbjct: 120 NCIHRDVKPENILIT--KQGQIKLCDFGFARI----LTGPGDDYTDYVATRWYRAPELLV 173
Query: 546 QDKSGYDENCDLWSLGVILVNVLR 569
D + Y D+W++G + +L
Sbjct: 174 GD-TQYGPPVDVWAIGCVFAELLT 196
Score = 45.8 bits (109), Expect = 6e-05
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 918 GFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
G E+ +I+ Q + AV+F H +HRD+KPEN+L++
Sbjct: 96 GVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILIT 134
Score = 37.7 bits (88), Expect = 0.019
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 34/101 (33%)
Query: 119 DKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNICRRCVEK 178
+K +G+GSY V +C + TGQ A+K K SE+ P I
Sbjct: 4 EKLSKIGEGSYGVVFKCRNRETGQIVAIK----KFVESED---------DPVI------- 43
Query: 179 STGQEYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQ 219
+KI EI +L+ + HPN+VNL VF+
Sbjct: 44 ------------KKI-ALREIRMLKQLK-HPNLVNLIEVFR 70
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 97.5 bits (243), Expect = 5e-22
Identities = 82/310 (26%), Positives = 137/310 (44%), Gaps = 88/310 (28%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGH-------- 430
D + ++ +G+Y K T Q +A+K I+++ NL+ Q
Sbjct: 2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQ-------NLILRNQIQQVFVERDI 54
Query: 431 ------PNIVNLHCVFQDEVHTYLVLELLKGGE---LLDRIRQKGRCGFTENEASRI-MR 480
P +V++ C F+ + H +V+E ++GG+ LL I G + +R+
Sbjct: 55 LTFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNI------GALPVDMARMYFA 108
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTP-------- 532
+ V A+ ++H+ G+VHRDLKP+NLL + + +IK+ DFG + + SL T
Sbjct: 109 ETVLALEYLHNYGIVHRDLKPDNLLIT--SMGHIKLTDFGLSKIGLMSLTTNLYEGHIEK 166
Query: 533 ----------CFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLW 582
C T +Y APEV +LRQ GY + D W
Sbjct: 167 DTREFLDKQVCGTPEYIAPEV-----------------------ILRQ---GYGKPVDWW 200
Query: 583 SLGVILYTMLCGRVPFHARSRDD---SALSIMARIKEGQFNFDAEAWSTVSSEAKELTKS 639
++G+ILY L G VPF + ++ +S EG +A + ++A++L
Sbjct: 201 AMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGD---EA-----LPADAQDLISR 252
Query: 640 LLTVNPAQRI 649
LL NP +R+
Sbjct: 253 LLRQNPLERL 262
Score = 65.6 bits (160), Expect = 2e-11
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 EDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKI 334
E L D D ISRLL ++P RLG G A E+K+H FF +DW+ L R A F+P++
Sbjct: 240 EALPADAQDLISRLLRQNPLERLGTG--GAFEVKQHRFFLGLDWNGLL--RQKAEFIPQL 295
Query: 335 SNELDVSNF 343
+E D S F
Sbjct: 296 ESEDDTSYF 304
Score = 45.2 bits (107), Expect = 9e-05
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 10/67 (14%)
Query: 894 HTYLVLELLKGGE---LLDRIRQKGRCGFTENEASRI-MRQLVAAVHFMHSRGVVHRDLK 949
H +V+E ++GG+ LL I G + +R+ + V A+ ++H+ G+VHRDLK
Sbjct: 75 HLCMVMEYVEGGDCATLLKNI------GALPVDMARMYFAETVLALEYLHNYGIVHRDLK 128
Query: 950 PENLLLS 956
P+NLL++
Sbjct: 129 PDNLLIT 135
>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR1 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. NDR1 is
highly expressed in thymus, muscle, lung and spleen. It
is not an essential protein because mice deficient of
NDR1 remain viable and fertile. However, these mice
develop T-cell lymphomas and appear to be hypersenstive
to carcinogenic treatment. NDR1 appears to act as a
tumor suppressor. NDR1 is also called STK38.
Length = 363
Score = 98.2 bits (244), Expect = 7e-22
Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 31/256 (12%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDC--SEEINLLRACQG------H 430
D + ++G G++ R +K TG YA+KI+ RK D E++ +RA +
Sbjct: 2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKIL-RKADMLEKEQVGHIRAERDILVEADS 60
Query: 431 PNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
+V + FQD+++ YL++E L GG+++ + +K TE E + + V A+ +H
Sbjct: 61 LWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKKDT--LTEEETQFYIAETVLAIDSIH 118
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF--TLQYAAPEVLRQDK 548
G +HRD+KP+NLL D G ++K+ DFG C + H F L ++ P
Sbjct: 119 QLGFIHRDIKPDNLLL-DSKG-HVKLSDFGL-CTGLKKAHRTEFYRNLNHSLPSDFTFQN 175
Query: 549 SGYDENCDLW----------SLGV---ILVNVLRQDKSGYDENCDLWSLGVILYTMLCGR 595
+ W ++G I V Q +GY++ CD WSLGVI+Y ML G
Sbjct: 176 MNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQ--TGYNKLCDWWSLGVIMYEMLIGY 233
Query: 596 VPFHARSRDDSALSIM 611
PF + + ++ +M
Sbjct: 234 PPFCSETPQETYKKVM 249
Score = 48.5 bits (115), Expect = 1e-05
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YL++E L GG+++ + +K TE E + + V A+ +H G +HRD+KP+NLLL
Sbjct: 77 YLIMEFLPGGDMMTLLMKKDT--LTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLL 134
Score = 35.4 bits (81), Expect = 0.14
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 261 IQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDD 320
+ ++ L P +P +S D I R + R G EE+K +PFF +DW+
Sbjct: 249 MNWKETLIFPPEVP--ISEKAKDLILRFCCEWEHRI---GAPGVEEIKTNPFFEGVDWEH 303
Query: 321 LATKRIPAPFVPKISNELDVSNFSDEF 347
+ + PA +I + D SNF DEF
Sbjct: 304 IRER--PAAIPIEIKSIDDTSNF-DEF 327
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 95.3 bits (237), Expect = 1e-21
Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 57/291 (19%)
Query: 386 LGDGSYSVCRRCVEKSTGQEY-AVKIIS----------RKIDCS-----EEINLLRACQG 429
LG G++ + +K+ GQ A+K I+ R+ D S E+ +++
Sbjct: 8 LGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLR 67
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKG---GELLDRIRQKGRCGFTENEASRIMRQLVAAV 486
HPNIV + F + Y+V++L++G GE + +++K + FTE I Q+V A+
Sbjct: 68 HPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQ-RFTEERIWNIFVQMVLAL 126
Query: 487 HFMH-SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRES--LHTPCFTLQYAAPEV 543
++H + +VHRDL P N++ + D + + DFG A K+ L + T+ Y+ PE+
Sbjct: 127 RYLHKEKRIVHRDLTPNNIMLGE--DDKVTITDFGLAKQKQPESKLTSVVGTILYSCPEI 184
Query: 544 LRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSR 603
++ + Y E D+W+ G ILY M + PF++
Sbjct: 185 VKNEP--------------------------YGEKADVWAFGCILYQMCTLQPPFYS--- 215
Query: 604 DDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRIRMMRV 654
+ LS+ +I E + E S + ++ S LT + R +++V
Sbjct: 216 -TNMLSLATKIVEAVYEPLPE--GMYSEDVTDVITSCLTPDAEARPDIIQV 263
Score = 55.6 bits (134), Expect = 4e-08
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 866 VTLFEEQLLGPITRARRRTFVNRSRYNVHTYLVLELLKG---GELLDRIRQKGRCGFTEN 922
VT+ +EQL P +TF+ R Y+V++L++G GE + +++K + FTE
Sbjct: 59 VTIIKEQLRHPNIVRYYKTFLENDRL----YIVMDLIEGAPLGEHFNSLKEKKQ-RFTEE 113
Query: 923 EASRIMRQLVAAVHFMH-SRGVVHRDLKPENLLL 955
I Q+V A+ ++H + +VHRDL P N++L
Sbjct: 114 RIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIML 147
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor
kinase. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily,
beta-adrenergic receptor kinase (beta-ARK) group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. The beta-ARK
group is composed of GRK2, GRK3, and similar proteins.
GRK2 and GRK3 are both widely expressed in many tissues,
although GRK2 is present at higher levels. They contain
an N-terminal RGS homology (RH) domain, a central
catalytic domain, and C-terminal pleckstrin homology
(PH) domain that mediates PIP2 and G protein
betagamma-subunit translocation to the membrane. GRK2
(also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays
a role in cardiac development and in hypertension.
Deletion of GRK2 in mice results in embryonic lethality,
caused by hypoplasia of the ventricular myocardium. GRK2
also plays important roles in the liver (as a regulator
of portal blood pressure), in immune cells, and in the
nervous system. Altered GRK2 expression has been
reported in several disorders including major
depression, schizophrenia, bipolar disorder, and
Parkinsonism.
Length = 278
Score = 95.0 bits (236), Expect = 2e-21
Identities = 75/276 (27%), Positives = 116/276 (42%), Gaps = 45/276 (16%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK---------IDCSEEINL-LRACQGHPNIV 434
I+G G + C + TG+ YA+K + +K + +E I L L + P IV
Sbjct: 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIV 60
Query: 435 NLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV 494
+ F +L+L+ GG+L + Q G F+E E +++ + MH+R V
Sbjct: 61 CMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGV--FSEAEMRFYAAEIILGLEHMHNRFV 118
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGFAC-LKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
V+RDLKP N+L D G ++++ D G AC ++ H T Y APEVL
Sbjct: 119 VYRDLKPANILL-DEHG-HVRISDLGLACDFSKKKPHASVGTHGYMAPEVL--------- 167
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
Q YD + D +SLG +L+ +L G PF D
Sbjct: 168 ----------------QKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK-----HE 206
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
I E + S E + L + LL + +R+
Sbjct: 207 IDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRL 242
Score = 55.7 bits (134), Expect = 3e-08
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
R L +P+ SP++ + LL +D RRLG A+E+K HPFF +DW +
Sbjct: 209 RMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLDWQMVFL 268
Query: 324 KRIPAPFVP 332
++ P P +P
Sbjct: 269 QKYPPPLIP 277
Score = 48.8 bits (116), Expect = 7e-06
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+L+L+ GG+L + Q G F+E E +++ + MH+R VV+RDLKP N+LL
Sbjct: 74 FILDLMNGGDLHYHLSQHGV--FSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILL 130
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 95.2 bits (237), Expect = 2e-21
Identities = 79/285 (27%), Positives = 134/285 (47%), Gaps = 59/285 (20%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIIS-RKIDCSE----EINLLRACQGHPNI 433
LD +G+GS + +KSTG++ AVK + RK E E+ ++R Q HPNI
Sbjct: 20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQ-HPNI 78
Query: 434 VNLHCVF--QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS 491
V ++ + DE+ ++V+E L+GG L D + R E + + + ++ A+ F+H+
Sbjct: 79 VEMYSSYLVGDEL--WVVMEFLEGGALTDIVTH-TR--MNEEQIATVCLAVLKALSFLHA 133
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFACL-------KRESL-HTPCFTLQYAAPEV 543
+GV+HRD+K +++L + + +K+ DFGF C +R+SL TP + APEV
Sbjct: 134 QGVIHRDIKSDSILLT--SDGRVKLSDFGF-CAQVSKEVPRRKSLVGTPYWM----APEV 186
Query: 544 LRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSR 603
+ + Y D+WSLG+++ M+ G P+
Sbjct: 187 I--------------------------SRLPYGTEVDIWSLGIMVIEMVDGEPPYF---- 216
Query: 604 DDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
++ L M RI++ VS + +L +PAQR
Sbjct: 217 NEPPLQAMKRIRDNLPPKLKNL-HKVSPRLRSFLDRMLVRDPAQR 260
Score = 49.4 bits (118), Expect = 3e-06
Identities = 20/61 (32%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V+E L+GG L D + R E + + + ++ A+ F+H++GV+HRD+K +++LL
Sbjct: 92 WVVMEFLEGGALTDIVTH-TR--MNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILL 148
Query: 956 S 956
+
Sbjct: 149 T 149
Score = 42.8 bits (101), Expect = 5e-04
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 264 RRILKTEPPI---PEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
+RI PP +SP + F+ R+LV+DP +R A EL HPF
Sbjct: 225 KRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQR-----ATAAELLNHPFL 272
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 94.3 bits (234), Expect = 2e-21
Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 45/273 (16%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKII-----SRKIDCSEEINLLRACQGHPNIVNLHCV 439
++G+GS+ ++ Q+YA+K I S ++ S + +L A HPNIV
Sbjct: 7 VVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKES 66
Query: 440 FQDEVHTYLVLELLKGGELLDRIR-QKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
F+ + H Y+V+E GG+L+ +I+ Q+G+ F E+ + Q+ V +H + V+HRD
Sbjct: 67 FEADGHLYIVMEYCDGGDLMQKIKLQRGKL-FPEDTILQWFVQMCLGVQHIHEKRVLHRD 125
Query: 499 LKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF---TLQYAAPEVLRQDKSGYDENC 555
+K +N+ + +K+ DFG A L C T Y PE+
Sbjct: 126 IKSKNIFLTQNG--KVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEI------------ 171
Query: 556 DLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIK 615
W + Y+ D+WSLG ILY + + PF A S + ++ ++
Sbjct: 172 --W------------ENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKN----LILKVC 213
Query: 616 EGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+G + S S E + L K + NP R
Sbjct: 214 QGSYK---PLPSHYSYELRSLIKQMFKRNPRSR 243
Score = 49.6 bits (118), Expect = 3e-06
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 894 HTYLVLELLKGGELLDRIR-QKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPEN 952
H Y+V+E GG+L+ +I+ Q+G+ F E+ + Q+ V +H + V+HRD+K +N
Sbjct: 72 HLYIVMEYCDGGDLMQKIKLQRGKL-FPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKN 130
Query: 953 LLLS 956
+ L+
Sbjct: 131 IFLT 134
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 94.2 bits (235), Expect = 3e-21
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 25/197 (12%)
Query: 385 ILGDGSY-SVCR---RCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPN 432
LG+G++ V + + E AVK + K D SE E ++R HPN
Sbjct: 6 KLGEGAFGEVYKGTLKGKGDGKEVEVAVKTL--KEDASEQQIEEFLREARIMRKLD-HPN 62
Query: 433 IVNLH-CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS 491
IV L ++E +V+E + GG+LLD +R+ + ++ Q+ + ++ S
Sbjct: 63 IVKLLGVCTEEEPL-MIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLES 121
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFAC-LKRESLHTPC---FTLQYAAPEVLRQD 547
+ +HRDL N L + +K+ DFG + L + + +++ APE L++
Sbjct: 122 KNFIHRDLAARNCLVGE--NLVVKISDFGLSRDLYDDDYYKVKGGKLPIRWMAPESLKEG 179
Query: 548 KSGYDENCDLWSLGVIL 564
K + D+WS GV+L
Sbjct: 180 K--FTSKSDVWSFGVLL 194
Score = 56.8 bits (138), Expect = 1e-08
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+V+E + GG+LLD +R+ + ++ Q+ + ++ S+ +HRDL N L+
Sbjct: 77 MIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLV 136
Query: 956 SGISGNLIKI 965
++KI
Sbjct: 137 G--ENLVVKI 144
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 94.2 bits (234), Expect = 3e-21
Identities = 61/237 (25%), Positives = 103/237 (43%), Gaps = 48/237 (20%)
Query: 382 KAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS-----------EEINLLRACQGH 430
K LG G++S C + + TG AVK ++ + S +EI L+ A H
Sbjct: 4 KGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLM-ARLNH 62
Query: 431 PNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
P+I+ + ++ H L +E + GG + + + G F E QL+ + ++H
Sbjct: 63 PHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRGLSYLH 120
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFAC-LKRESLHTPCF------TLQYAAPEV 543
++HRD+K NLL D G +++ DFG A L + F T+ + APEV
Sbjct: 121 ENQIIHRDVKGANLLI-DSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEV 179
Query: 544 LRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHA 600
LR ++ Y +CD+WS+G ++ M + P++A
Sbjct: 180 LRGEQ--------------------------YGRSCDVWSVGCVIIEMATAKPPWNA 210
Score = 42.9 bits (101), Expect = 4e-04
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 889 SRYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDL 948
+ + H L +E + GG + + + G F E QL+ + ++H ++HRD+
Sbjct: 72 TCEDSHFNLFVEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRGLSYLHENQIIHRDV 129
Query: 949 KPENLLLSGISGNLIKI 965
K NLL+ +G ++I
Sbjct: 130 KGANLLIDS-TGQRLRI 145
Score = 39.8 bits (93), Expect = 0.004
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 269 TEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
T P IPE LSP + D R L P R + EL +HP F
Sbjct: 228 TAPSIPEHLSPGLRDVTLRCLELQPEDRPP-----SRELLKHPVF 267
Score = 29.8 bits (67), Expect = 6.1
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 120 KAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS-----------EEINLLRACQGH 168
K LG G++S C + + TG AVK ++ + S +EI L+ A H
Sbjct: 4 KGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLM-ARLNH 62
Query: 169 PNICR 173
P+I R
Sbjct: 63 PHIIR 67
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 93.9 bits (234), Expect = 3e-21
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE------EINLLRACQGHPN 432
DL+ G LG G+ V + + + TG+ AVK I +I+ + E+++L C P
Sbjct: 2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCN-SPY 60
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS- 491
IV + F + + +E + GG LD+I ++ + E +I ++ + ++H
Sbjct: 61 IVGFYGAFYNNGDISICMEYMDGGS-LDKILKEVQGRIPERILGKIAVAVLKGLTYLHEK 119
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL-HTPCFTLQYAAPEVLRQDKSG 550
++HRD+KP N+L + + IK+ DFG + SL T T Y APE R +
Sbjct: 120 HKIIHRDVKPSNILVN--SRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPE--RIQGND 175
Query: 551 YDENCDLWSLGVILV 565
Y D+WSLG+ L+
Sbjct: 176 YSVKSDIWSLGLSLI 190
Score = 47.7 bits (114), Expect = 1e-05
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS-RGVVHRDLKPENLL 954
+ +E + GG L D+I ++ + E +I ++ + ++H ++HRD+KP N+L
Sbjct: 75 SICMEYMDGGSL-DKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNIL 133
Query: 955 LS----------GISGNLI 963
++ G+SG L+
Sbjct: 134 VNSRGQIKLCDFGVSGQLV 152
Score = 40.8 bits (96), Expect = 0.002
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 265 RILKTEPP-IPED-LSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFN 314
I+ PP +P SPD DF++ L+KDPR R +EL HPF
Sbjct: 215 YIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRER-----PSYKELLEHPFIK 261
Score = 36.5 bits (85), Expect = 0.052
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 117 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE------EINLLRACQGHPN 170
DL+ G LG G+ V + + + TG+ AVK I +I+ + E+++L C P
Sbjct: 2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCN-SPY 60
Query: 171 I 171
I
Sbjct: 61 I 61
>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase 15.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK15 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. Human MAPK15 is also called
Extracellular signal Regulated Kinase 8 (ERK8) while the
rat protein is called ERK7. ERK7 and ERK8 display both
similar and different biochemical properties. They
autophosphorylate and activate themselves and do not
require upstream activating kinases. ERK7 is
constitutively active and is not affected by
extracellular stimuli whereas ERK8 shows low basal
activity and is activated by DNA-damaging agents. ERK7
and ERK8 also have different substrate profiles. Genome
analysis shows that they are orthologs with similar gene
structures. ERK7 and ERK 8 may be involved in the
signaling of some nuclear receptor transcription
factors. ERK7 regulates hormone-dependent degradation of
estrogen receptor alpha while ERK8 down-regulates the
transcriptional co-activation androgen and
glucocorticoid receptors.
Length = 337
Score = 95.7 bits (239), Expect = 3e-21
Identities = 83/320 (25%), Positives = 123/320 (38%), Gaps = 103/320 (32%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKI-----DCSE------EINLLRACQGHPNIV 434
LG G+Y + + +++ T + A+K KI + ++ EI L+ HPNIV
Sbjct: 15 LGKGAYGIVWKAIDRRTKEVVALK----KIFDAFRNATDAQRTFREIMFLQELGDHPNIV 70
Query: 435 NLHCVFQDEVHT--YLVLELL--------KGGELLDRIRQKGRCGFTENEASRIMRQLVA 484
L V + E YLV E + + L D ++ IM QL+
Sbjct: 71 KLLNVIKAENDKDIYLVFEYMETDLHAVIRANILEDVHKR------------YIMYQLLK 118
Query: 485 AVHFMHSRGVVHRDLKPENLLF-SDPAGDNIKVVDFGFA---CLKRESLHTPCF-----T 535
A+ ++HS V+HRDLKP N+L SD +K+ DFG A E+ P T
Sbjct: 119 ALKYIHSGNVIHRDLKPSNILLNSDC---RVKLADFGLARSLSELEENPENPVLTDYVAT 175
Query: 536 LQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGR 595
Y APE+L ++ GV D+WS+G IL ML G+
Sbjct: 176 RWYRAPEILLGSTR--------YTKGV-----------------DMWSVGCILGEMLLGK 210
Query: 596 VPFHARS----------------RDD----------SALSIMARIKEGQFNFDAEAWSTV 629
F S +D + L + + D E
Sbjct: 211 PLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRP--RKPLD-ELLPKA 267
Query: 630 SSEAKELTKSLLTVNPAQRI 649
S +A +L K LL NP +R+
Sbjct: 268 SDDALDLLKKLLVFNPNKRL 287
Score = 56.0 bits (136), Expect = 4e-08
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 927 IMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
IM QL+ A+ ++HS V+HRDLKP N+LL+
Sbjct: 112 IMYQLLKALKYIHSGNVIHRDLKPSNILLN 141
Score = 34.9 bits (81), Expect = 0.16
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 249 SFTLSFIHDYYHIQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELK 308
F + + + + + P D D + +LLV +P +R L AEE
Sbjct: 243 PFAATMLDSLPSRPRKPLDELLPKAS----DDALDLLKKLLVFNPNKR-----LTAEEAL 293
Query: 309 RHPFFNVI-DWDDLATKRIPAPFVPKISNE--LDVSNFSDEFTKMI 351
HP+ + D +P P + + L V+ + ++ + I
Sbjct: 294 EHPYVAQFHNPSDEPV--LPYPITIPLDDNVKLSVAEYRNKLYEEI 337
Score = 30.2 bits (69), Expect = 4.7
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 15/61 (24%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKI-----DCSE------EINLLRACQGHPNIC 172
LG G+Y + + +++ T + A+K KI + ++ EI L+ HPNI
Sbjct: 15 LGKGAYGIVWKAIDRRTKEVVALK----KIFDAFRNATDAQRTFREIMFLQELGDHPNIV 70
Query: 173 R 173
+
Sbjct: 71 K 71
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
In photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of
proteins such as transducin and arrestin. Class IIIA
myosin is highly expressed in retina and in inner ear
hair cells. It is localized to the distal ends of
actin-bundled structures. Mutations in human myosin IIIA
are responsible for progressive nonsyndromic hearing
loss. Human myosin IIIA possesses ATPase and kinase
activities, and the ability to move actin filaments in a
motility assay. It may function as a cellular
transporter capable of moving along actin bundles in
sensory cells.
Length = 286
Score = 94.3 bits (234), Expect = 4e-21
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEI----NLLRACQGHPNIVNLHCVF- 440
+G G+Y + + K G + AVKI+ D EEI N+L+A HPN+V + ++
Sbjct: 26 IGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYY 85
Query: 441 -QDEV---HTYLVLELLKGGELLDRIRQKGRCGFTENEA--SRIMRQLVAAVHFMHSRGV 494
+D +LVLEL GG + D ++ + G E + I+ + + + +H
Sbjct: 86 KKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKT 145
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGFACL---KRESLHTPCFTLQYAAPEVL---RQDK 548
+HRD+K N+L + G +K+VDFG + R +T T + APEV+ +Q
Sbjct: 146 IHRDVKGNNILLTTEGG--VKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLD 203
Query: 549 SGYDENCDLWSLGVILVNV 567
S YD CD+WSLG+ + +
Sbjct: 204 STYDARCDVWSLGITAIEL 222
Score = 38.1 bits (88), Expect = 0.015
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEI----NLLRACQGHPNICR 173
+G G+Y + + K G + AVKI+ D EEI N+L+A HPN+ +
Sbjct: 26 IGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVK 79
Score = 36.1 bits (83), Expect = 0.069
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEA--SRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+LVLEL GG + D ++ + G E + I+ + + + +H +HRD+K N+
Sbjct: 96 WLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNI 155
Query: 954 LLSGISG 960
LL+ G
Sbjct: 156 LLTTEGG 162
Score = 34.6 bits (79), Expect = 0.20
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 174 RCVEKSTGQEYAVKIISRKIDCSEEI----NLLRACQGHPNIVNLHCVF 218
+ + K G + AVKI+ D EEI N+L+A HPN+V + ++
Sbjct: 36 KVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMY 84
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 5. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK5
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal
PIP2 binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5
also plays a crucial role in the pathogenesis of
sporadic Parkinson's disease. It participates in the
regulation and desensitization of PDGFRbeta, a receptor
tyrosine kinase involved in a variety of downstream
cellular effects including cell growth, chemotaxis,
apoptosis, and angiogenesis. GRK5 also regulates
Toll-like receptor 4, which is involved in innate and
adaptive immunity.
Length = 285
Score = 94.3 bits (234), Expect = 5e-21
Identities = 76/276 (27%), Positives = 115/276 (41%), Gaps = 45/276 (16%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK--------IDCSEEINLLRACQGHPNIVNL 436
+LG G + C ++TG+ YA K + +K E +L +VNL
Sbjct: 7 VLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQ-FVVNL 65
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
++ + LVL ++ GG+L I G GF E A +++ + +H V+
Sbjct: 66 AYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVY 125
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACL--KRESLHTPCFTLQYAAPEVLRQDKSGYDEN 554
RDLKPEN+L D +I++ D G A + ES+ T+ Y APEVL +
Sbjct: 126 RDLKPENILLDDYG--HIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSP- 182
Query: 555 CDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARI 614
D W LG ++Y M+ G+ PF R + R+
Sbjct: 183 -------------------------DYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRV 217
Query: 615 KEGQFNFDAEAWST-VSSEAKELTKSLLTVNPAQRI 649
E E +S S EAK + K LLT +P QR+
Sbjct: 218 LE-----TEEVYSAKFSEEAKSICKMLLTKDPKQRL 248
Score = 54.6 bits (131), Expect = 9e-08
Identities = 28/69 (40%), Positives = 38/69 (55%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
RR+L+TE S + LL KDP++RLG E A E+KRHPFF +++ L
Sbjct: 215 RRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNFKRLEA 274
Query: 324 KRIPAPFVP 332
+ PFVP
Sbjct: 275 GMLDPPFVP 283
Score = 47.7 bits (113), Expect = 1e-05
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LVL ++ GG+L I G GF E A +++ + +H V+RDLKPEN+LL
Sbjct: 77 LVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILL 135
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. Members of the
GRK4-like group include GRK4, GRK5, GRK6, and similar
GRKs. GRKs in this group contain an N-terminal RGS
homology (RH) domain and a catalytic domain, but lack a
G protein betagamma-subunit binding domain. They are
localized to the plasma membrane through
post-translational lipid modification or direct binding
to PIP2.
Length = 285
Score = 94.1 bits (234), Expect = 5e-21
Identities = 74/276 (26%), Positives = 118/276 (42%), Gaps = 45/276 (16%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVK------IISRKIDCS--EEINLLRACQGHPNIVNL 436
+LG G + C ++TG+ YA K I RK + E +L +V+L
Sbjct: 7 VLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNS-RFVVSL 65
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
++ + LVL L+ GG+L I G GF E A ++ + +H +V+
Sbjct: 66 AYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVY 125
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRE--SLHTPCFTLQYAAPEVLRQDKSGYDEN 554
RDLKPEN+L D +I++ D G A E ++ T+ Y APEV++ ++ +
Sbjct: 126 RDLKPENILLDDYG--HIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSP- 182
Query: 555 CDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARI 614
D W LG ++Y M+ G+ PF R + R+
Sbjct: 183 -------------------------DWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRV 217
Query: 615 KEGQFNFDAEAWST-VSSEAKELTKSLLTVNPAQRI 649
KE D E +S S A+ + + LLT +P R+
Sbjct: 218 KE-----DQEEYSEKFSEAARSICRQLLTKDPGFRL 248
Score = 63.3 bits (154), Expect = 1e-10
Identities = 24/69 (34%), Positives = 32/69 (46%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
RR+ + + E S +LL KDP RLG AEE+K HPFF ++ L
Sbjct: 215 RRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTANFKRLEA 274
Query: 324 KRIPAPFVP 332
+ PF P
Sbjct: 275 GMLEPPFCP 283
Score = 48.7 bits (116), Expect = 6e-06
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LVL L+ GG+L I G GF E A ++ + +H +V+RDLKPEN+LL
Sbjct: 77 LVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILL 135
>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR2 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. In
addition, NDR2 plays a role in regulating neuronal
growth and differentiation, as well as in facilitating
neurite outgrowth. It is also implicated in fear
conditioning as it contributes to the coupling of
neuronal morphological changes with fear-memory
consolidation. NDR2 is also referred to as STK38-like.
Length = 360
Score = 95.5 bits (237), Expect = 5e-21
Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 33/257 (12%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE---------EINLLRACQG 429
D + ++G G++ R +K TG YA+KI+ RK D E E ++L G
Sbjct: 2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKIL-RKADMLEKEQVAHIRAERDILVEADG 60
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
+V + FQD+ + YL++E L GG+++ + +K +E + + V A+ +
Sbjct: 61 -AWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKKDT--LSEEATQFYIAETVLAIDAI 117
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF--TLQYAAPEVLRQD 547
H G +HRD+KP+NLL A ++K+ DFG C + H F L + P
Sbjct: 118 HQLGFIHRDIKPDNLLLD--AKGHVKLSDFGL-CTGLKKAHRTEFYRNLTHNPPSDFSFQ 174
Query: 548 KSGYDENCDLW----------SLGV---ILVNVLRQDKSGYDENCDLWSLGVILYTMLCG 594
+ W ++G I V Q +GY++ CD WSLGVI+Y ML G
Sbjct: 175 NMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQ--TGYNKLCDWWSLGVIMYEMLIG 232
Query: 595 RVPFHARSRDDSALSIM 611
PF + + ++ +M
Sbjct: 233 YPPFCSETPQETYRKVM 249
Score = 48.1 bits (114), Expect = 1e-05
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YL++E L GG+++ + +K +E + + V A+ +H G +HRD+KP+NLLL
Sbjct: 77 YLIMEFLPGGDMMTLLMKKDT--LSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLL 134
Score = 43.9 bits (103), Expect = 3e-04
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 261 IQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDD 320
+ ++ L P +P +S D I R D R+G + EE+K HPFF +DW
Sbjct: 249 MNWKETLVFPPEVP--ISEKAKDLILRFCT-DSENRIGSNGV--EEIKSHPFFEGVDWGH 303
Query: 321 LATKRIPAPFVPKISNELDVSNFSDEFTKMIPADSPAIVPPNFDKIFKGSLFFEQY 376
+ + PA +I + D SNF + I + + P++ F Y
Sbjct: 304 IRER--PAAIPIEIKSIDDTSNFDEFPESDILQPAENTIEPDYKSK---DWVFLNY 354
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS was originally identified in Drosophila
using a screen for genes whose inactivation led to
overproliferation of cells. In tetrapods, there are two
LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in
mice results in the development of various tumors,
including sarcomas and ovarian cancer. LATS functions as
a tumor suppressor and is implicated in cell cycle
regulation.
Length = 376
Score = 96.0 bits (239), Expect = 5e-21
Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 60/287 (20%)
Query: 402 TGQEYAVKIISRKIDCSEEINLLRACQGH-------------PNIVNLHCVFQDEVHTYL 448
T YA+K + RK D L+R H +V L+ FQD+ + Y
Sbjct: 25 TNALYAMKTL-RKADV-----LMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYF 78
Query: 449 VLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSD 508
V++ + GG+++ + + G F E+ A + +L A+ +H G +HRD+KP+N+L D
Sbjct: 79 VMDYIPGGDMMSLLIRLGI--FEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILI-D 135
Query: 509 PAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVL 568
G +IK+ DFG C H + Y + RQD E + + + L
Sbjct: 136 RDG-HIKLTDFGL-CTGFRWTHDSKY---YQKGDHHRQDSMEPSE--EWSEIDRCRLKPL 188
Query: 569 RQ--------------------------DKSGYDENCDLWSLGVILYTMLCGRVPFHARS 602
+ ++GY + CD WS+GVILY ML G+ PF A
Sbjct: 189 ERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLA-- 246
Query: 603 RDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
D+ ++ + + + +S EA +L L R+
Sbjct: 247 --DTPAETQLKVINWETTLHIPSQAKLSREASDLILRLCC-GAEDRL 290
Score = 66.0 bits (161), Expect = 3e-11
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 277 LSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISN 336
LS + +D I RL RLG D E+K HPFF ID+ L +R AP++PKI++
Sbjct: 271 LSREASDLILRL-CCGAEDRLGKNGAD--EIKAHPFFKGIDFASLI-RRQKAPYIPKITH 326
Query: 337 ELDVSNF 343
D SNF
Sbjct: 327 PTDTSNF 333
Score = 46.0 bits (109), Expect = 7e-05
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y V++ + GG+++ + + G F E+ A + +L A+ +H G +HRD+KP+N+L+
Sbjct: 77 YFVMDYIPGGDMMSLLIRLGI--FEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILI 134
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, iota isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-iota is directly implicated in carcinogenesis. It is
critical to oncogenic signaling mediated by Ras and
Bcr-Abl. The PKC-iota gene is the target of
tumor-specific gene amplification in many human cancers,
and has been identified as a human oncogene. In addition
to its role in transformed growth, PKC-iota also
promotes invasion, chemoresistance, and tumor cell
survival. Expression profiling of PKC-iota is a
prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in
establishing cell polarity, and has critical embryonic
functions.
Length = 329
Score = 94.7 bits (235), Expect = 7e-21
Identities = 74/284 (26%), Positives = 132/284 (46%), Gaps = 56/284 (19%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK-IDCSEEIN-------LLRACQGHPNIVNL 436
++G GSY+ K T + YA+K++ ++ ++ E+I+ + HP +V L
Sbjct: 2 VIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
H FQ E + V+E + GG+L+ ++++ + E A ++ A++++H RG+++
Sbjct: 62 HSCFQTESRLFFVIEYVNGGDLMFHMQRQRK--LPEEHARFYSAEISLALNYLHERGIIY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTP------CFTLQYAAPEVLRQDKSG 550
RDLK +N+L D G +IK+ D+G +E L C T Y APE+LR + G
Sbjct: 120 RDLKLDNVLL-DSEG-HIKLTDYGMC---KEGLRPGDTTSTFCGTPNYIAPEILRGEDYG 174
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALS- 609
+ + D W+LGV+++ M+ GR PF D+
Sbjct: 175 F--------------------------SVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQN 208
Query: 610 ----IMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ I E Q ++S +A + KS L +P +R+
Sbjct: 209 TEDYLFQVILEKQIRIP----RSLSVKAASVLKSFLNKDPKERL 248
Score = 64.7 bits (157), Expect = 6e-11
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGG-GELDAEELKRHPFFNVIDWDDL 321
++ IL+ + IP LS A + L KDP+ RLG + +++ HPFF +DWD +
Sbjct: 214 FQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDLM 273
Query: 322 ATKRIPAPFVPKISNELDVSNFSDEFT 348
K++ PF P IS E + NF +FT
Sbjct: 274 EQKQVVPPFKPNISGEFGLDNFDAQFT 300
Score = 43.5 bits (102), Expect = 4e-04
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 841 KKADRQPAKQEEKQPVPQTTPPTDLVT----LFEEQLLGPITRARRRTFVNRSRYNVHTY 896
KK +R A + K+ + D V +FE+ P F SR +
Sbjct: 17 KKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL----F 72
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
V+E + GG+L+ ++++ + E A ++ A++++H RG+++RDLK +N+LL
Sbjct: 73 FVIEYVNGGDLMFHMQRQRK--LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLL 129
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 93.6 bits (233), Expect = 8e-21
Identities = 71/211 (33%), Positives = 94/211 (44%), Gaps = 42/211 (19%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE---------EINLLRACQG 429
D K +G+G+Y V + K TGQ A+K I +++ E EI+LL+ Q
Sbjct: 1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKI--RLESEEEGVPSTAIREISLLKELQ- 57
Query: 430 HPNIVNLHCVFQDEVHTYLVLELL-----------KGGELLDRIRQKGRCGFTENEASRI 478
HPNIV L V E YL+ E L G+ +D K
Sbjct: 58 HPNIVCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKS-----------Y 106
Query: 479 MRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFG----FACLKRESLHTPCF 534
+ Q++ + F HSR V+HRDLKP+NLL + IK+ DFG F R H
Sbjct: 107 LYQILQGILFCHSRRVLHRDLKPQNLLIDNKG--VIKLADFGLARAFGIPVRVYTHE-VV 163
Query: 535 TLQYAAPEVLRQDKSGYDENCDLWSLGVILV 565
TL Y APEVL Y D+WS+G I
Sbjct: 164 TLWYRAPEVL-LGSPRYSTPVDIWSIGTIFA 193
Score = 43.2 bits (102), Expect = 4e-04
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 13/67 (19%)
Query: 899 LELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSGI 958
L+ L G+ +D K + Q++ + F HSR V+HRDLKP+NLL+
Sbjct: 89 LDSLPKGQYMDAELVKS-----------YLYQILQGILFCHSRRVLHRDLKPQNLLID-- 135
Query: 959 SGNLIKI 965
+ +IK+
Sbjct: 136 NKGVIKL 142
Score = 30.5 bits (69), Expect = 3.6
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 117 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE---------EINLLRACQG 167
D K +G+G+Y V + K TGQ A+K I +++ E EI+LL+ Q
Sbjct: 1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKI--RLESEEEGVPSTAIREISLLKELQ- 57
Query: 168 HPNICR 173
HPNI
Sbjct: 58 HPNIVC 63
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 91.3 bits (227), Expect = 3e-20
Identities = 71/278 (25%), Positives = 124/278 (44%), Gaps = 50/278 (17%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS--------RKIDCSEEINLLRACQGHPNIVNLH 437
+G G +SV + + G+ A+K + + DC +EI+LL+ HPN++
Sbjct: 10 IGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD-HPNVIKYL 68
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIR--QKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
F + +VLEL G+L I+ +K + E + QL +A+ MHS+ ++
Sbjct: 69 ASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIM 128
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFG---FACLKRESLHTPCFTLQYAAPEVLRQDKSGYD 552
HRD+KP N+ + A +K+ D G F K + H+ T Y +PE + +
Sbjct: 129 HRDIKPANVFIT--ATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE------ 180
Query: 553 ENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSAL-SIM 611
+GY+ D+WSLG +LY M + PF+ D L S+
Sbjct: 181 --------------------NGYNFKSDIWSLGCLLYEMAALQSPFYG---DKMNLYSLC 217
Query: 612 ARIKEGQFN-FDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+I++ + A+ +S E ++L + +P +R
Sbjct: 218 KKIEKCDYPPLPADHYSE---ELRDLVSRCINPDPEKR 252
Score = 44.7 bits (106), Expect = 1e-04
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 897 LVLELLKGGELLDRIR--QKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
+VLEL G+L I+ +K + E + QL +A+ MHS+ ++HRD+KP N+
Sbjct: 79 IVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVF 138
Query: 955 LSG 957
++
Sbjct: 139 ITA 141
>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 7. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK7
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs
to the visual group of GRKs. It is primarily found in
the retina and plays a role in the regulation of opsin
light receptors. GRK7 is located in retinal cone outer
segments and plays an important role in regulating
photoresponse of the cones.
Length = 277
Score = 91.5 bits (227), Expect = 3e-20
Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 42/274 (15%)
Query: 386 LGDGSY-SVCRRCVEKSTGQEYAVKIISRK---IDCSEEINLLRA----CQGHPNIVNLH 437
LG G + VC V K+TG+ YA K + +K E++ LL P IVNL
Sbjct: 1 LGKGGFGEVCAVQV-KNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLA 59
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 497
F+ + H LV+ L+ GG+L I G G Q+ + +HS +V+R
Sbjct: 60 YAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYR 119
Query: 498 DLKPENLLFSDPAGDNIKVVDFGFACLKRE--SLHTPCFTLQYAAPEVLRQDKSGYDENC 555
D+KPEN+L D N ++ D G A ++ ++ T Y APE+L+++
Sbjct: 120 DMKPENVLLDDQG--NCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEP------- 170
Query: 556 DLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIK 615
Y D +++G +Y M+ GR PF + + R
Sbjct: 171 -------------------YSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTL 211
Query: 616 EGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
E + F+ + + + E+K++ + L P R+
Sbjct: 212 EDEVKFEHQNF---TEESKDICRLFLAKKPEDRL 242
Score = 45.7 bits (108), Expect = 5e-05
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
H LV+ L+ GG+L I G G Q+ + +HS +V+RD+KPEN+
Sbjct: 67 HLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENV 126
Query: 954 LL 955
LL
Sbjct: 127 LL 128
Score = 41.5 bits (97), Expect = 0.001
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 264 RRILKTEPPIPED-LSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLA 322
RR L+ E + + D L K P RLG E + ++ ++H FF I++ L
Sbjct: 208 RRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKN-DDPRKHEFFKTINFPRLE 266
Query: 323 TKRIPAPFVPK 333
IP PFVP
Sbjct: 267 AGLIPPPFVPD 277
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 91.8 bits (228), Expect = 3e-20
Identities = 68/194 (35%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS-------EEINLLRACQGHPNIVNLHC 438
+G+G+Y V + K TG+ A+K I + EI+LL+ HPNIV L
Sbjct: 8 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN-HPNIVKLLD 66
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
V E YLV E L +L + G + QL+ + F HS V+HRD
Sbjct: 67 VIHTENKLYLVFEFLHQ-DLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRD 125
Query: 499 LKPENLLFSDPAGDNIKVVDFG----FACLKRESLHTPCFTLQYAAPEVLRQDKSGYDEN 554
LKP+NLL + G IK+ DFG F R H TL Y APE+L K Y
Sbjct: 126 LKPQNLLI-NTEG-AIKLADFGLARAFGVPVRTYTHE-VVTLWYRAPEILLGCKY-YSTA 181
Query: 555 CDLWSLGVILVNVL 568
D+WSLG I ++
Sbjct: 182 VDIWSLGCIFAEMV 195
Score = 40.2 bits (94), Expect = 0.003
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLL 955
QL+ + F HS V+HRDLKP+NLL+
Sbjct: 108 QLLQGLAFCHSHRVLHRDLKPQNLLI 133
Score = 29.8 bits (67), Expect = 6.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 124 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS-------EEINLLRACQGHPNICR 173
+G+G+Y V + K TG+ A+K I + EI+LL+ HPNI +
Sbjct: 8 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN-HPNIVK 63
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 8. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal
recessive polycystic kidney disease (ARPKD). Nek8 is
also associated with a rare form of juvenile renal
cystic disease, nephronophthisis type 9. It has been
suggested that a defect in the ciliary localization of
Nek8 contributes to the development of cysts manifested
by these diseases.
Length = 256
Score = 90.7 bits (225), Expect = 4e-20
Identities = 66/281 (23%), Positives = 127/281 (45%), Gaps = 52/281 (18%)
Query: 381 DKAGILGDGSYSVCRRCVEKSTGQEYAVKII-------SRKIDCSEEINLLRACQGHPNI 433
+K ++G G++ + C K+ + +K I ++ E +L+ HPNI
Sbjct: 3 EKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLS-HPNI 61
Query: 434 VNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRG 493
+ + F ++ +V+E GG L + I+++ E+ Q++ A+H +H++
Sbjct: 62 IEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKL 121
Query: 494 VVHRDLKPENLLFSDPAGDNIKVVDFGFA-CLKRES-----LHTPCFTLQYAAPEVLRQD 547
++HRDLK +N+L D +K+ DFG + L +S + TPC Y +PE+
Sbjct: 122 ILHRDLKTQNILL-DKHKMVVKIGDFGISKILSSKSKAYTVVGTPC----YISPEL---- 172
Query: 548 KSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSA 607
C + Y++ D+W+LG +LY + + F A +
Sbjct: 173 -------C---------------EGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALV 210
Query: 608 LSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
L IM+ G F ++ S + ++L S+L ++P++R
Sbjct: 211 LKIMS----GTFAPISD---RYSPDLRQLILSMLNLDPSKR 244
Score = 50.6 bits (121), Expect = 1e-06
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+V+E GG L + I+++ E+ Q++ A+H +H++ ++HRDLK +N+LL
Sbjct: 76 IVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILL 134
>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C zeta.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, zeta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-zeta plays a critical role in activating the glucose
transport response. It is activated by glucose, insulin,
and exercise through diverse pathways. PKC-zeta also
plays a central role in maintaining cell polarity in
yeast and mammalian cells. In addition, it affects actin
remodeling in muscle cells.
Length = 327
Score = 92.0 bits (228), Expect = 4e-20
Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 41/225 (18%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK-------ID-CSEEINLLRACQGHPNIVNL 436
++G GSY+ K Q YA+K++ ++ ID E ++ +P +V L
Sbjct: 2 VIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
H FQ +LV+E + GG+L+ ++++ + E A ++ A++F+H RG+++
Sbjct: 62 HSCFQTTSRLFLVIEYVNGGDLMFHMQRQRK--LPEEHARFYAAEICIALNFLHERGIIY 119
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGF---ACLKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLK +N+L A +IK+ D+G ++ T C T Y APE+LR ++ G+
Sbjct: 120 RDLKLDNVLLD--ADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGF-- 175
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPF 598
+ D W+LGV+++ M+ GR PF
Sbjct: 176 ------------------------SVDWWALGVLMFEMMAGRSPF 196
Score = 62.4 bits (151), Expect = 3e-10
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 263 YRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGG-ELDAEELKRHPFFNVIDWDDL 321
++ IL+ IP LS + + L KDP+ RLG + ++K H FF IDWD L
Sbjct: 212 FQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSIDWDLL 271
Query: 322 ATKRIPAPFVPKISNELDVSNFSDEFTKMIPADSPAIVPPNFDKIFK 368
K++ PF P+I+++ + NF +FT P + P+ + + K
Sbjct: 272 EKKQVTPPFKPQITDDYGLENFDTQFT-----SEPVQLTPDDEDVIK 313
Score = 45.4 bits (107), Expect = 8e-05
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 868 LFEEQLLGPITRARRRTFVNRSRYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRI 927
+FE+ P F SR +LV+E + GG+L+ ++++ + E A
Sbjct: 48 VFEQASSNPFLVGLHSCFQTTSRL----FLVIEYVNGGDLMFHMQRQRK--LPEEHARFY 101
Query: 928 MRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++ A++F+H RG+++RDLK +N+LL
Sbjct: 102 AAEICIALNFLHERGIIYRDLKLDNVLL 129
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 91.4 bits (227), Expect = 4e-20
Identities = 68/238 (28%), Positives = 103/238 (43%), Gaps = 43/238 (18%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNLH 437
LG+G+Y+ + ++TG+ A+K I +D E EI+L++ + H NIV LH
Sbjct: 8 LGEGTYATVYKGRNRTTGEIVALKEI--HLDAEEGTPSTAIREISLMKELK-HENIVRLH 64
Query: 438 CVFQDEVHTYLVLELLKGGELLDRIRQKG-RCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
V E LV E + +L + G R N QL+ + F H V+H
Sbjct: 65 DVIHTENKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLH 123
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFA---CLKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLKP+NLL + +K+ DFG A + + TL Y AP+VL ++
Sbjct: 124 RDLKPQNLLINKRG--ELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRT---- 177
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIM 611
Y + D+WS+G I+ M+ GR F + +D L I
Sbjct: 178 ---------------------YSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIF 214
Score = 45.9 bits (109), Expect = 5e-05
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 916 RCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
R N QL+ + F H V+HRDLKP+NLL++
Sbjct: 94 RGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINK 135
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 91.2 bits (226), Expect = 5e-20
Identities = 72/276 (26%), Positives = 122/276 (44%), Gaps = 45/276 (16%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK---------IDCSEEINLLRACQGHPNIVN 435
+LG G + C ++TG+ YA K + +K + +E+ L + +V+
Sbjct: 7 VLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRF--VVS 64
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
L ++ + LVL L+ GG+L I G GF E A ++ + +H +V
Sbjct: 65 LAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIV 124
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKRE--SLHTPCFTLQYAAPEVLRQDKSGYDE 553
+RDLKPEN+L D +I++ D G A E ++ T+ Y APEV++ ++
Sbjct: 125 YRDLKPENILLDDHG--HIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNER----- 177
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
Y + D W+LG +LY M+ G+ PF R + +
Sbjct: 178 ---------------------YTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERL 216
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+KE Q + + S +A+ L K LL +P +R+
Sbjct: 217 VKEVQEEYSEK----FSPDARSLCKMLLCKDPKERL 248
Score = 48.1 bits (114), Expect = 9e-06
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LVL L+ GG+L I G GF E A ++ + +H +V+RDLKPEN+LL
Sbjct: 77 LVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILL 135
Score = 48.1 bits (114), Expect = 1e-05
Identities = 24/69 (34%), Positives = 32/69 (46%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
R + + + E SPD LL KDP+ RLG A E+K HP F I++ L
Sbjct: 215 RLVKEVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINFKRLEA 274
Query: 324 KRIPAPFVP 332
+ PF P
Sbjct: 275 GMLEPPFKP 283
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKalpha is expressed
ubiquitously in many tissues. It plays a role in the
regulation of peripheral actin reorganization and
neurite outgrowth. It may also play a role in the
transferrin iron uptake pathway.
Length = 332
Score = 92.1 bits (228), Expect = 5e-20
Identities = 83/275 (30%), Positives = 131/275 (47%), Gaps = 40/275 (14%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISR-------KIDCSEEINLLRACQGHP 431
D + ++G G++ K+ + +A+KI+++ + C E + +
Sbjct: 2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQ 61
Query: 432 NIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS 491
I LH FQDE + YLV++ GG+LL + K E+ A + ++V A+ +H
Sbjct: 62 WITTLHYAFQDENNLYLVMDYYVGGDLLTLL-SKFEDRLPEDMARFYLAEMVIAIDSVHQ 120
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHT-----PCFTLQYAAPEVLRQ 546
VHRD+KP+N+L D G +I++ DFG +CLK T T Y +PE+L+
Sbjct: 121 LHYVHRDIKPDNILM-DMNG-HIRLADFG-SCLKLMEDGTVQSSVAVGTPDYISPEILQA 177
Query: 547 DKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDS 606
+ G K Y CD WSLGV +Y ML G PF+A S ++
Sbjct: 178 MEDG---------------------KGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET 216
Query: 607 ALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLL 641
IM KE +F F A+ + VS +AK+L + L+
Sbjct: 217 YGKIMNH-KE-RFQFPAQV-TDVSEDAKDLIRRLI 248
Score = 57.0 bits (137), Expect = 2e-08
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 231 GIECVFFSSSLIIFFIILS----FTLSFIHDYYHIQYRRILKTEPPIPEDLSPDVADFIS 286
G EC ++S + ++ ++ + S + Y I + P D+S D D I
Sbjct: 186 GPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIR 245
Query: 287 RLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDVSNF 343
RL+ R G+ E+ K+HPFF IDWD++ + AP++P++S+ D SNF
Sbjct: 246 RLICSREHRL---GQNGIEDFKQHPFFTGIDWDNI--RNCEAPYIPEVSSPTDTSNF 297
Score = 38.5 bits (89), Expect = 0.014
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV++ GG+LL + K E+ A + ++V A+ +H VHRD+KP+N+L+
Sbjct: 77 YLVMDYYVGGDLLTLL-SKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILM 135
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 90.7 bits (225), Expect = 5e-20
Identities = 77/288 (26%), Positives = 121/288 (42%), Gaps = 47/288 (16%)
Query: 375 QYDMDLDKAG---ILGDGSYSVCRRCVEKSTGQEYAVKIISRKID-----CSEEINLLRA 426
+Y+ + D+ G +LG G+Y + + ST A+K I + EEI L
Sbjct: 2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSY 61
Query: 427 CQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQK-GRCGFTENEASRIMRQLVAA 485
+ H NIV + + +E + GG L +R K G E +Q++
Sbjct: 62 LK-HRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEG 120
Query: 486 VHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF-----TLQYAA 540
+ ++H +VHRD+K +N+L + +G +K+ DFG + KR + PC TLQY A
Sbjct: 121 LKYLHDNQIVHRDIKGDNVLVNTYSG-VVKISDFGTS--KRLAGINPCTETFTGTLQYMA 177
Query: 541 PEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHA 600
PEV+ + GY D+WSLG +V M G+ PF
Sbjct: 178 PEVIDKGPRGYGAPADIWSLGCTIVE------------------------MATGKPPFIE 213
Query: 601 RSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+A+ K G F E ++S+EAK +P +R
Sbjct: 214 LGEPQAAM-----FKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKR 256
Score = 39.4 bits (92), Expect = 0.006
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 892 NVHTYLVLELLKGGELLDRIRQK-GRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKP 950
N + +E + GG L +R K G E +Q++ + ++H +VHRD+K
Sbjct: 77 NGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKG 136
Query: 951 ENLLLSGISGNLIKI 965
+N+L++ SG ++KI
Sbjct: 137 DNVLVNTYSG-VVKI 150
Score = 33.3 bits (76), Expect = 0.58
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 268 KTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
K P IPE LS + +FI R DP +R A +L + PF
Sbjct: 228 KIHPEIPESLSAEAKNFILRCFEPDPDKR-----ASAHDLLQDPF 267
>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 3. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK3
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK3 (also known as beta-adrenergic
receptor kinase 2) is widely expressed in many tissues.
GRK3-deficient mice show a lack of olfactory receptor
desensitization and altered regulation of the M2
muscarinic airway. GRK3 is involved in modulating the
cholinergic response of airway smooth muscles. It also
plays a role in dopamine receptor regulation. GRK3
promoter polymorphisms may be associated with bipolar
disorder.
Length = 279
Score = 90.8 bits (225), Expect = 6e-20
Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 45/276 (16%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK---------IDCSEEINLLRACQGH-PNIV 434
I+G G + C + TG+ YA+K + +K + +E I L G P IV
Sbjct: 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIV 60
Query: 435 NLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV 494
+ F +L+L+ GG+L + Q G F+E E +++ + MH+R V
Sbjct: 61 CMTYAFHTPDKLCFILDLMNGGDLHYHLSQHGV--FSEKEMRFYATEIILGLEHMHNRFV 118
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGFAC-LKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
V+RDLKP N+L + ++++ D G AC ++ H T Y APEVL
Sbjct: 119 VYRDLKPANILLDEHG--HVRISDLGLACDFSKKKPHASVGTHGYMAPEVL--------- 167
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
Q + YD + D +SLG +L+ +L G PF D
Sbjct: 168 ----------------QKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK-----HE 206
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
I + E + S E K L + LL + ++R+
Sbjct: 207 IDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRL 242
Score = 46.9 bits (111), Expect = 3e-05
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
R L +P+ SP++ + LL +D +RLG A+E+K H FF IDW +
Sbjct: 209 RMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGIDWQQVYL 268
Query: 324 KRIPAPFVP 332
++ P P +P
Sbjct: 269 QKYPPPLIP 277
Score = 45.8 bits (108), Expect = 5e-05
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 891 YNVHT----YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHR 946
Y HT +L+L+ GG+L + Q G F+E E +++ + MH+R VV+R
Sbjct: 64 YAFHTPDKLCFILDLMNGGDLHYHLSQHGV--FSEKEMRFYATEIILGLEHMHNRFVVYR 121
Query: 947 DLKPENLLL 955
DLKP N+LL
Sbjct: 122 DLKPANILL 130
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 89.8 bits (223), Expect = 1e-19
Identities = 71/281 (25%), Positives = 120/281 (42%), Gaps = 57/281 (20%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE------EINLLRACQGH--PNIVNL 436
++G G+Y R TG+ A+KII+ + E+ LL + PNI
Sbjct: 8 LIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKY 67
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCG-FTENEASRIMRQLVAAVHFMHSRGVV 495
+ + ++++E +GG +R + G E S I+R+++ A+ ++H GV+
Sbjct: 68 YGSYLKGPRLWIIMEYAEGGS----VRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVI 123
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACL------KRESL-HTPCFTLQYAAPEVLRQDK 548
HRD+K N+L ++ N+K+ DFG A L KR + TP + APEV+ + K
Sbjct: 124 HRDIKAANILVTNTG--NVKLCDFGVAALLNQNSSKRSTFVGTP----YWMAPEVITEGK 177
Query: 549 SGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSAL 608
YD D+WSLG+ +Y M G P+ S D+
Sbjct: 178 Y-------------------------YDTKADIWSLGITIYEMATGNPPY---SDVDAFR 209
Query: 609 SIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
++M K + +S +E + L P +R+
Sbjct: 210 AMMLIPKSKPPRLEDNGYSK---LLREFVAACLDEEPKERL 247
Score = 43.6 bits (103), Expect = 3e-04
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 896 YLVLELLKGGELLDRIRQKGRCG-FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
++++E +GG +R + G E S I+R+++ A+ ++H GV+HRD+K N+L
Sbjct: 78 WIIMEYAEGGS----VRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANIL 133
Query: 955 LS 956
++
Sbjct: 134 VT 135
Score = 33.2 bits (76), Expect = 0.52
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 266 ILKTEPPIPED--LSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
I K++PP ED S + +F++ L ++P+ RL AEEL + +
Sbjct: 214 IPKSKPPRLEDNGYSKLLREFVAACLDEEPKERL-----SAEELLKSKW 257
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 89.5 bits (223), Expect = 1e-19
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 27/197 (13%)
Query: 386 LGDGSYSVCRRCVEKSTGQEY----AVKIISRKIDCS------EEINLLRACQGHPNIVN 435
LG+G++ + K G+ AVK + EE ++++ HPNIV
Sbjct: 7 LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLS-HPNIVR 65
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
L V Y+V E + GG+LLD +R+ G T + ++ Q+ + ++ S+ V
Sbjct: 66 LLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEK-LTLKDLLQMALQIAKGMEYLESKNFV 124
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFA--------CLKRESLHTPCFTLQYAAPEVLRQD 547
HRDL N L ++ +K+ DFG + KR P +++ APE L+
Sbjct: 125 HRDLAARNCLVTE--NLVVKISDFGLSRDIYEDDYYRKRGGGKLP---IKWMAPESLKDG 179
Query: 548 KSGYDENCDLWSLGVIL 564
K + D+WS GV+L
Sbjct: 180 K--FTSKSDVWSFGVLL 194
Score = 53.3 bits (129), Expect = 2e-07
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V E + GG+LLD +R+ G T + ++ Q+ + ++ S+ VHRDL N L+
Sbjct: 77 YIVTEYMPGGDLLDFLRKHGEK-LTLKDLLQMALQIAKGMEYLESKNFVHRDLAARNCLV 135
Query: 956 SGISGNLIKI 965
+ ++KI
Sbjct: 136 T--ENLVVKI 143
Score = 29.4 bits (67), Expect = 8.2
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 174 RCVEKSTGQEYAVKIISRKIDCS------EEINLLRACQGHPNIVNLH-CVFQDE 221
+ + T + AVK + EE ++++ HPNIV L Q E
Sbjct: 21 KGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLS-HPNIVRLLGVCTQGE 74
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 89.2 bits (221), Expect = 1e-19
Identities = 74/279 (26%), Positives = 117/279 (41%), Gaps = 52/279 (18%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKII----------SRKIDCSEEINLLRACQGHPNIVN 435
LG GS+ +K E +K++ + + ++E LL HP IV
Sbjct: 8 LGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLD-HPAIVK 66
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCG--FTENEASRIMRQLVAAVHFMHSRG 493
H F + ++ E +G +L ++ + G +EN+ QL+ VH+MH R
Sbjct: 67 FHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRR 126
Query: 494 VVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLH---TPCFTLQYAAPEVLRQDKSG 550
++HRDLK +N+ + + +K+ DFG + L S T T Y +PE L+
Sbjct: 127 ILHRDLKAKNIFLKN---NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKH---- 179
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSI 610
GYD D+WSLG ILY M C F + + LS+
Sbjct: 180 ----------------------QGYDSKSDIWSLGCILYEMCCLAHAFEGQ----NFLSV 213
Query: 611 MARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ RI EG E T S + + +S+L +P+ R
Sbjct: 214 VLRIVEGPTPSLPE---TYSRQLNSIMQSMLNKDPSLRP 249
Score = 53.4 bits (128), Expect = 2e-07
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 839 KKKKADRQPAKQEEKQ-PVPQTTPPTDLVTLFEEQLLG----PITRARRRTFVNRSRYNV 893
K KKA + + K+ PV + P + E QLL P +F+ R + +
Sbjct: 20 KDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCI 79
Query: 894 HTYLVLELLKGGELLDRIRQKGRCG--FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPE 951
T E +G +L ++ + G +EN+ QL+ VH+MH R ++HRDLK +
Sbjct: 80 IT----EYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAK 135
Query: 952 NLLLSGISGNLIKI 965
N+ L NL+KI
Sbjct: 136 NIFL---KNNLLKI 146
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 89.1 bits (222), Expect = 1e-19
Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 26/197 (13%)
Query: 385 ILGDGSY-SVCR---RCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPN 432
LG+G++ V + + E AVK + K D SE E ++R HPN
Sbjct: 6 KLGEGAFGEVYKGKLKGKGGKKKVEVAVKTL--KEDASEQQIEEFLREARIMRKLD-HPN 62
Query: 433 IVNLH-CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS 491
+V L ++E Y+V+E ++GG+LL +R+ R + ++ Q+ + ++ S
Sbjct: 63 VVKLLGVCTEEEPL-YIVMEYMEGGDLLSYLRKN-RPKLSLSDLLSFALQIARGMEYLES 120
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFAC-LKRESLHTPC---FTLQYAAPEVLRQD 547
+ +HRDL N L + +K+ DFG + L + + +++ APE L++
Sbjct: 121 KNFIHRDLAARNCLVGE--NLVVKISDFGLSRDLYDDDYYRKRGGKLPIRWMAPESLKEG 178
Query: 548 KSGYDENCDLWSLGVIL 564
K + D+WS GV+L
Sbjct: 179 K--FTSKSDVWSFGVLL 193
Score = 53.7 bits (130), Expect = 1e-07
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V+E ++GG+LL +R+ R + ++ Q+ + ++ S+ +HRDL N L+
Sbjct: 77 YIVMEYMEGGDLLSYLRKN-RPKLSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLV 135
Query: 956 SGISGNLIKI 965
++KI
Sbjct: 136 G--ENLVVKI 143
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 89.7 bits (222), Expect = 2e-19
Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 29/216 (13%)
Query: 373 FEQYDMDLDK------AGILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-----DCSEEI 421
+E DLD G LGDG++ + K TG A K+I K D EI
Sbjct: 1 YEHVRRDLDPNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEI 60
Query: 422 NLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQ 481
+L C HP IV L F + ++++E GG + D I + G TE + I RQ
Sbjct: 61 EILATCN-HPYIVKLLGAFYWDGKLWIMIEFCPGGAV-DAIMLELDRGLTEPQIQVICRQ 118
Query: 482 LVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFAC------LKRES-LHTPCF 534
++ A+ ++HS ++HRDLK N+L + GD IK+ DFG + +R+S + TP
Sbjct: 119 MLEALQYLHSMKIIHRDLKAGNVLLTLD-GD-IKLADFGVSAKNVKTLQRRDSFIGTP-- 174
Query: 535 TLQYAAPEVL---RQDKSGYDENCDLWSLGVILVNV 567
+ APEV+ + YD D+WSLG+ L+ +
Sbjct: 175 --YWMAPEVVMCETMKDTPYDYKADIWSLGITLIEM 208
Score = 46.2 bits (109), Expect = 4e-05
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++++E GG + D I + G TE + I RQ++ A+ ++HS ++HRDLK N+LL
Sbjct: 85 WIMIEFCPGGAV-DAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLL 143
Query: 956 S 956
+
Sbjct: 144 T 144
Score = 31.9 bits (72), Expect = 1.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 265 RILKTEPPI---PEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
+I K+EPP P S + DF+ L K P R A +L HPF
Sbjct: 226 KIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETR-----PSAAQLLEHPF 271
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 88.6 bits (220), Expect = 2e-19
Identities = 77/279 (27%), Positives = 114/279 (40%), Gaps = 48/279 (17%)
Query: 382 KAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS----------EEINLLRACQGHP 431
K +LG GS+ + G +AVK +S D +EI LL Q HP
Sbjct: 4 KGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQ-HP 62
Query: 432 NIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS 491
NIV ++E + Y+ LEL+ GG L +++ G F E RQ++ + ++H
Sbjct: 63 NIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLGLEYLHD 120
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF--TLQYAAPEVLRQDKS 549
R VHRD+K N+L D G +K+ DFG A E F + + APEV+ Q
Sbjct: 121 RNTVHRDIKGANILV-DTNGV-VKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQ--- 175
Query: 550 GYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALS 609
+ GY D+WSLG + M G+ P+
Sbjct: 176 ----------------------QGGYGLAADIWSLGCTVLEMATGKPPWSQLE------G 207
Query: 610 IMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+ A K G+ +S EAK+ L +P+ R
Sbjct: 208 VAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLR 246
Score = 52.8 bits (127), Expect = 2e-07
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 268 KTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
K PPIP+ LS + DFI + L +DP R A EL HPF
Sbjct: 218 KELPPIPDHLSDEAKDFILKCLQRDPSLR-----PTAAELLEHPF 257
Score = 47.8 bits (114), Expect = 1e-05
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+ LEL+ GG L +++ G F E RQ++ + ++H R VHRD+K N+L+
Sbjct: 78 YIFLELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILV 135
>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear
Dbf2-Related kinase-like Protein Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), NDR kinase
subfamily, fungal NDR-like proteins, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The NDR subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This group is
composed of fungal NDR-like proteins including
Saccharomyces cerevisiae CBK1 (or CBK1p),
Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago
maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like
NDR kinase, group members contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. CBK1 is an essential component in the RAM
(regulation of Ace2p activity and cellular
morphogenesis) network. CBK1 and Orb6 play similar roles
in coordinating cell morphology with cell cycle
progression. Ukc1 is involved in morphogenesis,
pathogenicity, and pigment formation. Cot1 plays a role
in polar tip extension.
Length = 377
Score = 91.1 bits (226), Expect = 2e-19
Identities = 85/318 (26%), Positives = 140/318 (44%), Gaps = 59/318 (18%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISR----KID----CSEEINLLRACQGHPNIVNL 436
++G G++ R +K TG+ YA+K + + K D E ++L A P +V+L
Sbjct: 8 VIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVL-AESDSPWVVSL 66
Query: 437 HCVFQDEVHTYLVLELLKGGELLDR-IRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
+ FQD + YL++E L GG+L+ I+ F+E+ M + V A+ +H G +
Sbjct: 67 YYSFQDAQYLYLIMEFLPGGDLMTMLIKYDT---FSEDVTRFYMAECVLAIEAVHKLGFI 123
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYDENC 555
HRD+KP+N+L G +IK+ DFG + H A + L Q KS +
Sbjct: 124 HRDIKPDNILID--RGGHIKLSDFGLST----GFHK---QHDSAYYQKLLQGKSNKNRID 174
Query: 556 DLWSLGVILVNVLRQDKS-------------------------------GYDENCDLWSL 584
+ S+ V +N+ K GY + CD WSL
Sbjct: 175 NRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSL 234
Query: 585 GVILYTMLCGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVN 644
G I++ L G PF + + ++ I+ + F D +S EA++L + L+T N
Sbjct: 235 GAIMFECLIGWPPFCSENSHETYRKIINWRETLYFPDDI----HLSVEAEDLIRRLIT-N 289
Query: 645 PAQRI-RMMRVKLTFHAF 661
R+ R ++ H F
Sbjct: 290 AENRLGRGGAHEIKSHPF 307
Score = 71.0 bits (174), Expect = 8e-13
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 11/137 (8%)
Query: 231 GIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILKTEPPI--PED--LSPDVADFIS 286
G EC ++S I+F ++ + F + H YR+I+ + P+D LS + D I
Sbjct: 226 GQECDWWSLGAIMFECLIGWP-PFCSENSHETYRKIINWRETLYFPDDIHLSVEAEDLIR 284
Query: 287 RLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAPFVPKISNELDVSNF-SD 345
RL+ + RLG G A E+K HPFF +DWD + ++I APF+P++ + D S F +D
Sbjct: 285 RLIT-NAENRLGRG--GAHEIKSHPFFRGVDWDTI--RQIRAPFIPQLKSITDTSYFPTD 339
Query: 346 EFTKMIPADSPAIVPPN 362
E ++ A + P
Sbjct: 340 ELEQVPEAPALKQAAPA 356
Score = 44.1 bits (104), Expect = 3e-04
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 896 YLVLELLKGGELLDR-IRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
YL++E L GG+L+ I+ F+E+ M + V A+ +H G +HRD+KP+N+L
Sbjct: 77 YLIMEFLPGGDLMTMLIKYDT---FSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNIL 133
Query: 955 L 955
+
Sbjct: 134 I 134
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 87.9 bits (218), Expect = 3e-19
Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 39/236 (16%)
Query: 416 DCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEA 475
D EI +L Q HPNI+ + F D+ + +E GG L D+I ++ F E
Sbjct: 45 DALNEIVILSLLQ-HPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMV 103
Query: 476 SRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA-CLKRESLH--TP 532
+ Q+V+AV ++H G++HRD+K N+ + IK+ DFG + L E T
Sbjct: 104 LWYLFQIVSAVSYIHKAGILHRDIKTLNIFLT--KAGLIKLGDFGISKILGSEYSMAETV 161
Query: 533 CFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTML 592
T Y +PE+ + K Y+ D+W+LG +LY +L
Sbjct: 162 VGTPYYMSPELCQGVK--------------------------YNFKSDIWALGCVLYELL 195
Query: 593 CGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+ F A + L+++ +I +G + + SSE L SLL +P +R
Sbjct: 196 TLKRTFDA----TNPLNLVVKIVQGNYTPVVSVY---SSELISLVHSLLQQDPEKR 244
Score = 50.1 bits (120), Expect = 2e-06
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 899 LELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSGI 958
+E GG L D+I ++ F E + Q+V+AV ++H G++HRD+K N+ L+
Sbjct: 78 MEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLT-- 135
Query: 959 SGNLIKI 965
LIK+
Sbjct: 136 KAGLIKL 142
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 88.2 bits (218), Expect = 4e-19
Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 414 KIDCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIR--QKGRCGFT 471
+ DC +EI+LL+ HPN++ + F ++ +VLEL G+L I+ +K +
Sbjct: 46 RADCIKEIDLLKQLN-HPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIP 104
Query: 472 ENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFG---FACLKRES 528
E + QL +A+ MHSR V+HRD+KP N+ + A +K+ D G F K +
Sbjct: 105 EKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFIT--ATGVVKLGDLGLGRFFSSKTTA 162
Query: 529 LHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSL 584
H+ T Y +PE R ++GY+ D+WSLG +L + Y + +L+SL
Sbjct: 163 AHSLVGTPYYMSPE--RIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSL 216
Score = 44.6 bits (105), Expect = 1e-04
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 871 EQLLGPITRARRRTFVNRSRYNVHTYLVLELLKGGELLDRIR--QKGRCGFTENEASRIM 928
+QL P +F+ + N+ VLEL G+L I+ +K + E +
Sbjct: 57 KQLNHPNVIKYYASFIEDNELNI----VLELADAGDLSRMIKHFKKQKRLIPEKTVWKYF 112
Query: 929 RQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
QL +A+ MHSR V+HRD+KP N+ ++
Sbjct: 113 VQLCSALEHMHSRRVMHRDIKPANVFITA 141
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 87.8 bits (217), Expect = 4e-19
Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 25/204 (12%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKII---------SRKIDCSE-EINLLRACQGHPNIV 434
+LG G++ C + TG+E AVK + S++++ E EI LL+ H IV
Sbjct: 9 LLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLL-HERIV 67
Query: 435 NLHCVFQD--EVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+ +D E + +E + GG + D+++ G TEN + RQ++ V ++HS
Sbjct: 68 QYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSYG--ALTENVTRKYTRQILEGVSYLHSN 125
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFA------CLKRESLHTPCFTLQYAAPEVLRQ 546
+VHRD+K N+L D G N+K+ DFG + CL + + T + +PEV+
Sbjct: 126 MIVHRDIKGANIL-RDSVG-NVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISG 183
Query: 547 DKSGYDENCDLWSLGVILVNVLRQ 570
+ GY D+WS+G +V +L +
Sbjct: 184 E--GYGRKADIWSVGCTVVEMLTE 205
Score = 48.1 bits (114), Expect = 9e-06
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
+ +E + GG + D+++ G TEN + RQ++ V ++HS +VHRD+K N+L
Sbjct: 83 IFMEHMPGGSIKDQLKSYG--ALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANIL 138
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 4. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK4
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in
the cerebellum and kidney. It is expressed as multiple
splice variants with different domain architectures. It
is post-translationally palmitoylated and localized in
the membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 87.4 bits (216), Expect = 9e-19
Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 45/276 (16%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRK--------IDCSEEINLLRACQGHPNIVNL 436
+LG G + C ++TG+ YA K + +K E +L +V+L
Sbjct: 7 VLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSR-FVVSL 65
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
++ + LVL ++ GG+L I G GF E A +L + + +V+
Sbjct: 66 AYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVY 125
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACL--KRESLHTPCFTLQYAAPEVLRQDKSGYDEN 554
RDLKPEN+L D +I++ D G A + E++ T+ Y APEV+ +K
Sbjct: 126 RDLKPENILLDDRG--HIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEK------ 177
Query: 555 CDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARI 614
Y + D W LG ++Y M+ G+ PF R + R+
Sbjct: 178 --------------------YTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRV 217
Query: 615 KEGQFNFDAEAWS-TVSSEAKELTKSLLTVNPAQRI 649
KE D E +S S +AK + + LLT NP +R+
Sbjct: 218 KE-----DQEEYSEKFSEDAKSICRMLLTKNPKERL 248
Score = 48.5 bits (115), Expect = 7e-06
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
RR+ + + E S D LL K+P+ RLG A +K+HP F I++ L
Sbjct: 215 RRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFKRLEA 274
Query: 324 KRIPAPFVP 332
+ PF P
Sbjct: 275 NMLEPPFCP 283
Score = 44.6 bits (105), Expect = 1e-04
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LVL ++ GG+L I G GF E A +L + + +V+RDLKPEN+LL
Sbjct: 77 LVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILL 135
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 1. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK1
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase,
belongs to the visual group of GRKs and is expressed in
retinal cells. It phosphorylates rhodopsin in rod cells,
which leads to termination of the phototransduction
cascade. Mutations in GRK1 are associated to a
recessively inherited form of stationary nightblindness
called Oguchi disease.
Length = 280
Score = 86.8 bits (215), Expect = 1e-18
Identities = 76/309 (24%), Positives = 127/309 (41%), Gaps = 67/309 (21%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPN------------- 432
LG G + C ++TG+ YA K +++K L+ +G+
Sbjct: 1 LGKGGFGEVSACQMRATGKLYACKKLNKK--------RLKKRKGYEGAMVEKRILAKVHS 52
Query: 433 --IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQ--KGRCGFTENEASRIMRQLVAAVHF 488
IV+L FQ + LV+ ++ GG+L I + GF E A Q+++ +
Sbjct: 53 RFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEH 112
Query: 489 MHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFAC-LKRESLHTPCF--TLQYAAPEVLR 545
+H R +++RDLKPEN+L + N+++ D G A LK T + T + APE+L+
Sbjct: 113 LHQRRIIYRDLKPENVLLDNDG--NVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQ 170
Query: 546 QDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDD 605
++ YD + D ++LGV LY M+ R PF AR
Sbjct: 171 GEE--------------------------YDFSVDYFALGVTLYEMIAARGPFRARGEKV 204
Query: 606 SALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRI-------RMMRVKLTF 658
+ RI + + S +K ++LL +P +R+ +R F
Sbjct: 205 ENKELKQRILNDSVTYPDK----FSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLF 260
Query: 659 HAFHQAQKE 667
+ Q E
Sbjct: 261 RDLNWRQLE 269
Score = 59.1 bits (143), Expect = 2e-09
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 264 RRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLAT 323
+RIL P+ SP F LL KDP +RLG + + + L+ HP F ++W L
Sbjct: 211 QRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLNWRQLEA 270
Query: 324 KRIPAPFVP 332
+P PFVP
Sbjct: 271 GMLPPPFVP 279
Score = 43.3 bits (102), Expect = 3e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 897 LVLELLKGGELLDRIRQ--KGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
LV+ ++ GG+L I + GF E A Q+++ + +H R +++RDLKPEN+L
Sbjct: 70 LVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVL 129
Query: 955 L 955
L
Sbjct: 130 L 130
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 87.8 bits (218), Expect = 1e-18
Identities = 75/289 (25%), Positives = 124/289 (42%), Gaps = 38/289 (13%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS-------EEINLLRACQGHPNIVNLH 437
+G G+Y V ++ +G++ A+K I D E+ +LR + H NI+ +
Sbjct: 12 NIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFK-HDNIIAIR 70
Query: 438 CVFQDEV----HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRG 493
+ + Y+V++L++ L I TE + QL+ + ++HS
Sbjct: 71 DILRPPGADFKDVYVVMDLMESD--LHHIIH-SDQPLTEEHIRYFLYQLLRGLKYIHSAN 127
Query: 494 VVHRDLKPENLLFSDPAGDNIKVVDFGFA-CLKRESLHTPCF------TLQYAAPEVLRQ 546
V+HRDLKP NLL ++ +++ DFG A L F T Y APE+L
Sbjct: 128 VIHRDLKPSNLLVNEDC--ELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLS 185
Query: 547 DKSGYDENCDLWSLGVILVNVL--RQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRD 604
Y D+WS+G I +L RQ G + + L +IL ++L G +R
Sbjct: 186 -LPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNY---VHQLKLIL-SVL-GSPSEEVLNRI 239
Query: 605 DSALSIMARIKEGQFNFDAEAWSTV----SSEAKELTKSLLTVNPAQRI 649
S + + + WS + S EA +L +L +P +RI
Sbjct: 240 GSDR--VRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERI 286
Score = 45.8 bits (109), Expect = 7e-05
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
Y+V++L++ L I TE + QL+ + ++HS V+HRDLKP NL
Sbjct: 82 DVYVVMDLMESD--LHHIIH-SDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNL 138
Query: 954 LLSG 957
L++
Sbjct: 139 LVNE 142
Score = 31.1 bits (71), Expect = 2.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 276 DLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
SP+ D +S++L DP R + E+ +HPF
Sbjct: 265 KASPEALDLLSQMLQFDPEER-----ITVEQALQHPFL 297
Score = 29.6 bits (67), Expect = 8.1
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 123 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS-------EEINLLRACQGHPNI 171
+G G+Y V ++ +G++ A+K I D E+ +LR + H NI
Sbjct: 12 NIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFK-HDNI 66
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 86.8 bits (215), Expect = 2e-18
Identities = 62/211 (29%), Positives = 89/211 (42%), Gaps = 29/211 (13%)
Query: 381 DKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKID-------CSEEINLLRACQGHPNI 433
+K +G+G+Y + +K+TG+ A+K ++D EI+LL+ I
Sbjct: 4 EKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYI 63
Query: 434 VNLHCVFQDEVHT---------YLVLELLKGG--ELLDRIRQKGRCGFTENEASRIMRQL 482
V L V H YLV E L + +D + M QL
Sbjct: 64 VRLLDV----EHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQL 119
Query: 483 VAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFG----FACLKRESLHTPCFTLQY 538
+ V H GV+HRDLKP+NLL D +K+ D G F+ + H TL Y
Sbjct: 120 LKGVAHCHKHGVMHRDLKPQNLLV-DKQKGLLKIADLGLGRAFSIPVKSYTHE-IVTLWY 177
Query: 539 AAPEVLRQDKSGYDENCDLWSLGVILVNVLR 569
APEVL + Y D+WS+G I + R
Sbjct: 178 RAPEVL-LGSTHYSTPVDIWSVGCIFAEMSR 207
Score = 54.4 bits (131), Expect = 1e-07
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 896 YLVLELLKGG--ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
YLV E L + +D + M QL+ V H GV+HRDLKP+NL
Sbjct: 82 YLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNL 141
Query: 954 LLSGISGNLIKI 965
L+ L+KI
Sbjct: 142 LVDK-QKGLLKI 152
Score = 31.3 bits (71), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 275 EDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFN 314
DLSP+ D + ++L DP +R + A+ HP+F+
Sbjct: 261 PDLSPEGLDLLQKMLRYDPAKR-----ISAKAALTHPYFD 295
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 85.7 bits (213), Expect = 2e-18
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 32/204 (15%)
Query: 385 ILGDGSYSVCRRCV---EKSTGQEYAVKIISRKIDCSEEINLLRACQ-----GHPNIVNL 436
LG+G++ + + E AVK + E + L+ + GHPN+V L
Sbjct: 2 KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRL 61
Query: 437 -HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEAS-------RIMRQLVAAVHF 488
++E YLVLE ++GG+LLD +R+ + +++ Q+ + +
Sbjct: 62 LGVCTEEE-PLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEY 120
Query: 489 MHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA--------CLKRESLHTPCFTLQYAA 540
+ S+ VHRDL N L + +K+ DFG + K+ P +++ A
Sbjct: 121 LASKKFVHRDLAARNCLVGE--DLVVKISDFGLSRDVYDDDYYRKKTGGKLP---IRWMA 175
Query: 541 PEVLRQDKSGYDENCDLWSLGVIL 564
PE L+ + D+WS GV+L
Sbjct: 176 PESLKDGI--FTSKSDVWSFGVLL 197
Score = 52.2 bits (126), Expect = 4e-07
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEAS-------RIMRQLVAAVHFMHSRGVVHRDL 948
YLVLE ++GG+LLD +R+ + +++ Q+ + ++ S+ VHRDL
Sbjct: 72 YLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDL 131
Query: 949 KPENLLLSGISGNLIKI 965
N L+ ++KI
Sbjct: 132 AARNCLVG--EDLVVKI 146
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 85.8 bits (212), Expect = 3e-18
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 15/195 (7%)
Query: 384 GILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-----DCSEEINLLRACQGHPNIVNLHC 438
G LGDG++ + K TG A K+I K D EI++L +C HPNIV L
Sbjct: 11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCD-HPNIVKLLD 69
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
F E + ++++E GG + D + + TE + + +Q + A++++H ++HRD
Sbjct: 70 AFYYENNLWILIEFCAGGAV-DAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRD 128
Query: 499 LKPENLLFSDPAGDNIKVVDFGFACLKRESLH---TPCFTLQYAAPEVLRQDKSG---YD 552
LK N+LF+ +IK+ DFG + ++ + T + APEV+ + S YD
Sbjct: 129 LKAGNILFT--LDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYD 186
Query: 553 ENCDLWSLGVILVNV 567
D+WSLG+ L+ +
Sbjct: 187 YKADVWSLGITLIEM 201
Score = 37.7 bits (87), Expect = 0.023
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 891 YNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKP 950
Y + ++++E GG + D + + TE + + +Q + A++++H ++HRDLK
Sbjct: 73 YENNLWILIEFCAGGAV-DAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKA 131
Query: 951 ENLLLS 956
N+L +
Sbjct: 132 GNILFT 137
Score = 30.8 bits (69), Expect = 3.1
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 122 GILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-----DCSEEINLLRACQGHPNICR 173
G LGDG++ + K TG A K+I K D EI++L +C HPNI +
Sbjct: 11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCD-HPNIVK 66
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 85.1 bits (210), Expect = 4e-18
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 25/204 (12%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE----------EINLLRACQGHPNIV 434
+LG G++ C + TG+E AVK + D E EI LL+ + H IV
Sbjct: 9 LLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLR-HDRIV 67
Query: 435 NLHCVFQDEVHTYLVL--ELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+ +D L + E + GG + D+++ G TEN R RQ++ V ++HS
Sbjct: 68 QYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYLHSN 125
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFA------CLKRESLHTPCFTLQYAAPEVLRQ 546
+VHRD+K N+L D AG N+K+ DFG + C+ + + T + +PEV+
Sbjct: 126 MIVHRDIKGANIL-RDSAG-NVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISG 183
Query: 547 DKSGYDENCDLWSLGVILVNVLRQ 570
+ GY D+WS+ +V +L +
Sbjct: 184 E--GYGRKADVWSVACTVVEMLTE 205
Score = 45.8 bits (108), Expect = 5e-05
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
+ +E + GG + D+++ G TEN R RQ++ V ++HS +VHRD+K N+L
Sbjct: 83 IFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRD 140
Query: 957 GISGNL 962
+GN+
Sbjct: 141 S-AGNV 145
Score = 32.7 bits (74), Expect = 0.79
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 269 TEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
T+P +P+ +S DF+ ++ V++ RR AE L RHPF
Sbjct: 226 TKPMLPDGVSDACRDFLKQIFVEEKRRPT------AEFLLRHPF 263
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 88.2 bits (218), Expect = 4e-18
Identities = 77/236 (32%), Positives = 111/236 (47%), Gaps = 43/236 (18%)
Query: 420 EINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQ--KGRCGFTENEASR 477
E++ L AC H IV F+ + L++E GG+L +I+Q K F E E
Sbjct: 115 ELHCLAACD-HFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGL 173
Query: 478 IMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL-----HTP 532
+ Q+V A+ +HSR ++HRDLK N +F P G IK+ DFGF+ +S+ +
Sbjct: 174 LFYQIVLALDEVHSRKMMHRDLKSAN-IFLMPTGI-IKLGDFGFSKQYSDSVSLDVASSF 231
Query: 533 CFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTML 592
C T Y APE LW ++ Y + D+WSLGVILY +L
Sbjct: 232 CGTPYYLAPE--------------LW------------ERKRYSKKADMWSLGVILYELL 265
Query: 593 CGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
PF S+ + IM ++ G+++ VSS K L LL+ NPA R
Sbjct: 266 TLHRPFKGPSQRE----IMQQVLYGKYD---PFPCPVSSGMKALLDPLLSKNPALR 314
Score = 46.5 bits (110), Expect = 5e-05
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 897 LVLELLKGGELLDRIRQ--KGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
L++E GG+L +I+Q K F E E + Q+V A+ +HSR ++HRDLK N+
Sbjct: 142 LIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIF 201
Query: 955 L 955
L
Sbjct: 202 L 202
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 85.6 bits (212), Expect = 5e-18
Identities = 82/289 (28%), Positives = 132/289 (45%), Gaps = 33/289 (11%)
Query: 384 GILGDGSYSVCRRCVEKSTGQEYAVKIISRK-------IDCSEEINLLRACQGHPNIVNL 436
G +G+G+Y + +K TG+ A+K + I EI +LR H NIVNL
Sbjct: 13 GQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLN-HRNIVNL 71
Query: 437 HCVFQDEVHT----------YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAV 486
+ D+ YLV E + L + + G F+E+ M+QL+ +
Sbjct: 72 KEIVTDKQDALDFKKDKGAFYLVFEYMDHD--LMGLLESGLVHFSEDHIKSFMKQLLEGL 129
Query: 487 HFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTP----CFTLQYAAPE 542
++ H + +HRD+K N+L ++ IK+ DFG A L P TL Y PE
Sbjct: 130 NYCHKKNFLHRDIKCSNILLNNKG--QIKLADFGLARLYNSEESRPYTNKVITLWYRPPE 187
Query: 543 VLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARS 602
+L ++ Y D+WS G IL + + K + N +L L +I + LCG P A
Sbjct: 188 LLLGEER-YGPAIDVWSCGCILGELFTK-KPIFQANQELAQLELI--SRLCGS-PCPAVW 242
Query: 603 RDDSALSIMARIK-EGQFNFD-AEAWSTVSSEAKELTKSLLTVNPAQRI 649
D L +K + Q+ E +S + + A +L +LT++P++R
Sbjct: 243 PDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRC 291
Score = 40.5 bits (95), Expect = 0.003
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV E + L + + G F+E+ M+QL+ +++ H + +HRD+K N+LL
Sbjct: 92 YLVFEYMDHD--LMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILL 149
Query: 956 S 956
+
Sbjct: 150 N 150
>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional.
Length = 294
Score = 84.5 bits (209), Expect = 1e-17
Identities = 69/214 (32%), Positives = 99/214 (46%), Gaps = 32/214 (14%)
Query: 374 EQYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKII----------SRKIDCSEEINL 423
+QY+ K +G+G+Y V + ++ T + A+K I S I EI+L
Sbjct: 2 DQYE----KVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAI---REISL 54
Query: 424 LRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRC-GFTENE--ASRIMR 480
L+ Q H NIV L V E YLV E L LD + F +N +
Sbjct: 55 LKEMQ-HGNIVRLQDVVHSEKRLYLVFEYLD----LDLKKHMDSSPDFAKNPRLIKTYLY 109
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFG----FACLKRESLHTPCFTL 536
Q++ + + HS V+HRDLKP+NLL D + +K+ DFG F R H TL
Sbjct: 110 QILRGIAYCHSHRVLHRDLKPQNLLI-DRRTNALKLADFGLARAFGIPVRTFTHE-VVTL 167
Query: 537 QYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQ 570
Y APE+L + Y D+WS+G I ++ Q
Sbjct: 168 WYRAPEILLGSRH-YSTPVDIWSVGCIFAEMVNQ 200
Score = 41.7 bits (98), Expect = 0.001
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 832 THSTPARKKKKADRQPAKQEEKQPVPQTTPPTDLVTLFEEQLLGPITRARRRTFVNRSRY 891
T+ T A KK + + +E + VP T ++L +E G I R + + Y
Sbjct: 26 TNETIALKKIRLE------QEDEGVPSTA--IREISLLKEMQHGNIVRLQDVVHSEKRLY 77
Query: 892 NVHTYLVLELLKGGELLDRIRQKGRCGFTENE--ASRIMRQLVAAVHFMHSRGVVHRDLK 949
V YL L+L K F +N + Q++ + + HS V+HRDLK
Sbjct: 78 LVFEYLDLDLKK--------HMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLK 129
Query: 950 PENLLL 955
P+NLL+
Sbjct: 130 PQNLLI 135
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 83.6 bits (207), Expect = 2e-17
Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 20/197 (10%)
Query: 384 GILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS------EEINLLRACQGHPNIVNLH 437
LG+G+ +C K+TG +A+K I+ + E+ + ++C+ P IV +
Sbjct: 7 SRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCK-SPYIVKYY 65
Query: 438 CVFQDEVHT--YLVLELLKGGEL---LDRIRQKG-RCGFTENEASRIMRQLVAAVHFMHS 491
F DE + + +E +GG L +++++G R G E +I ++ + ++HS
Sbjct: 66 GAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIG--EKVLGKIAESVLKGLSYLHS 123
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL-HTPCFTLQYAAPEVLRQDKSG 550
R ++HRD+KP N+L + +K+ DFG + SL T T Y APE R
Sbjct: 124 RKIIHRDIKPSNILLTRKG--QVKLCDFGVSGELVNSLAGTFTGTSFYMAPE--RIQGKP 179
Query: 551 YDENCDLWSLGVILVNV 567
Y D+WSLG+ L+ V
Sbjct: 180 YSITSDVWSLGLTLLEV 196
Score = 46.3 bits (110), Expect = 4e-05
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 18/94 (19%)
Query: 884 TFVNRSRYNVHTYLVLELLKGGEL---LDRIRQKG-RCGFTENEASRIMRQLVAAVHFMH 939
F++ S ++ + +E +GG L +++++G R G E +I ++ + ++H
Sbjct: 67 AFLDESSSSI--GIAMEYCEGGSLDSIYKKVKKRGGRIG--EKVLGKIAESVLKGLSYLH 122
Query: 940 SRGVVHRDLKPENLLLS----------GISGNLI 963
SR ++HRD+KP N+LL+ G+SG L+
Sbjct: 123 SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELV 156
Score = 32.4 bits (74), Expect = 1.1
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 122 GILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS------EEINLLRACQGHPNICR 173
LG+G+ +C K+TG +A+K I+ + E+ + ++C+ P I +
Sbjct: 7 SRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCK-SPYIVK 63
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein
Serine/Threonine Kinase, Group I p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group I, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include
MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc,
Stat5a, and Aurora A, among others.
Length = 293
Score = 83.8 bits (207), Expect = 2e-17
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 14/200 (7%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEE--IN--LLRACQGHPNIVNLHCVFQ 441
+G G+ ++ +TGQE A+K ++ + +E IN L+ HPNIVN +
Sbjct: 27 IGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYL 86
Query: 442 DEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKP 501
++V+E L GG L D + + E + + + R+ + A+ F+HS V+HRD+K
Sbjct: 87 VGDELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKS 143
Query: 502 ENLLFSDPAGDNIKVVDFGFACL---KRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLW 558
+N+L ++K+ DFGF ++ T T + APEV+ + Y D+W
Sbjct: 144 DNILLG--MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV--TRKAYGPKVDIW 199
Query: 559 SLGVILVNVLRQDKSGYDEN 578
SLG++ + ++ + +EN
Sbjct: 200 SLGIMAIEMVEGEPPYLNEN 219
Score = 51.4 bits (123), Expect = 9e-07
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V+E L GG L D + + E + + + R+ + A+ F+HS V+HRD+K +N+LL
Sbjct: 92 WVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILL 148
Query: 956 SGISGNL 962
G+ G++
Sbjct: 149 -GMDGSV 154
Score = 30.3 bits (68), Expect = 5.0
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 268 KTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNV 315
E PE LS DF++R L D +R A+EL +HPF +
Sbjct: 232 TPELQNPEKLSAIFRDFLNRCLEMDVEKR-----GSAKELLQHPFLKI 274
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 82.8 bits (204), Expect = 3e-17
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 25/207 (12%)
Query: 382 KAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE----------EINLLRACQGHP 431
+ +LG G++ C + TG+E A K + + E EI LL+ Q H
Sbjct: 6 RGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQ-HE 64
Query: 432 NIVNLHCVFQDEVHTYLV--LELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
IV + +D L +E + GG + D+++ G TE+ + RQ++ + ++
Sbjct: 65 RIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYL 122
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA------CLKRESLHTPCFTLQYAAPEV 543
HS +VHRD+K N+L D AG N+K+ DFG + C+ + + T + +PEV
Sbjct: 123 HSNMIVHRDIKGANIL-RDSAG-NVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEV 180
Query: 544 LRQDKSGYDENCDLWSLGVILVNVLRQ 570
+ + GY D+WSLG +V +L +
Sbjct: 181 ISGE--GYGRKADVWSLGCTVVEMLTE 205
Score = 40.8 bits (95), Expect = 0.002
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 848 AKQEEKQP-VPQTTPPTDLVTLFEEQLLGPITRARRRTFVN--RSRYNVHTYLVLELLKG 904
AKQ + P P+T+ + E QLL + R + R R + +E + G
Sbjct: 32 AKQVQFDPESPETSKEVSALEC-EIQLLKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPG 90
Query: 905 GELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
G + D+++ G TE+ + RQ++ + ++HS +VHRD+K N+L
Sbjct: 91 GSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANIL 138
Score = 33.5 bits (76), Expect = 0.40
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 269 TEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
T P +P +S DF+ + V+ R AEEL RHPF
Sbjct: 226 TNPQLPSHISEHARDFLGCIFVEARHRP------SAEELLRHPF 263
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase Like 5.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 5 (CDKL5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. Mutations in the gene encoding CDKL5,
previously called STK9, are associated with early onset
epilepsy and severe mental retardation [X-linked
infantile spasm syndrome (ISSX) or West syndrome]. In
addition, CDKL5 mutations also sometimes cause a
phenotype similar to Rett syndrome (RTT), a progressive
neurodevelopmental disorder. These pathogenic mutations
are located in the N-terminal portion of the protein
within the kinase domain.
Length = 287
Score = 82.7 bits (204), Expect = 3e-17
Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 22/194 (11%)
Query: 384 GILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE-------EINLLRACQGHPNIVNL 436
G++G+G+Y V +C K T + A+K + E E+ +LR + NIV L
Sbjct: 7 GVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLK-QENIVEL 65
Query: 437 HCVFQDEVHTYLVLELLKGG--ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV 494
F+ YLV E ++ ELL+ + G + + QL+ A+H+ H +
Sbjct: 66 KEAFRRRGKLYLVFEYVEKNMLELLEEMPN----GVPPEKVRSYIYQLIKAIHWCHKNDI 121
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTP----CFTLQYAAPEVLRQDKSG 550
VHRD+KPENLL S D +K+ DFGFA E + T Y +PE+L +
Sbjct: 122 VHRDIKPENLLIS--HNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLL--GAP 177
Query: 551 YDENCDLWSLGVIL 564
Y + D+WS+G IL
Sbjct: 178 YGKAVDMWSVGCIL 191
Score = 43.8 bits (103), Expect = 2e-04
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 832 THSTPARKKKKADRQPAKQEEKQPVPQTT--PPTDLVTLFEEQLLGPITRARRRTFVNRS 889
T A KK K EE + V +TT L TL +E ++ RRR
Sbjct: 25 TKEIVAIKKFK------DSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRG----- 73
Query: 890 RYNVHTYLVLELLKGG--ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 947
YLV E ++ ELL+ + G + + QL+ A+H+ H +VHRD
Sbjct: 74 ----KLYLVFEYVEKNMLELLEEMPN----GVPPEKVRSYIYQLIKAIHWCHKNDIVHRD 125
Query: 948 LKPENLLLS 956
+KPENLL+S
Sbjct: 126 IKPENLLIS 134
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 85.3 bits (211), Expect = 3e-17
Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 58/286 (20%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKII-------SRKIDCSEEINLLRACQGHPNIVNLH 437
+LG G+ S G+ +AVK++ + K E+ L C +IV H
Sbjct: 39 VLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCD-FFSIVKCH 97
Query: 438 CVF-----QDEVHTY---LVLELLKGGELLDRIRQKGRCG--FTENEASRIMRQLVAAVH 487
F ++ + LVL+ G+L I+ + + F E+EA + Q++ AVH
Sbjct: 98 EDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVH 157
Query: 488 FMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGF-----ACLKRESLHTPCFTLQYAAPE 542
+HS+ ++HRD+K N+L + +K+ DFGF A + + T C T Y APE
Sbjct: 158 HVHSKHMIHRDIKSANILLC--SNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPE 215
Query: 543 VLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARS 602
+ R + Y + D++SLGV+LY +L + PF +
Sbjct: 216 IWR--------------------------RKPYSKKADMFSLGVLLYELLTLKRPFDGEN 249
Query: 603 RDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
++ +M + G+++ ++S E +E+ +LL+ +P +R
Sbjct: 250 MEE----VMHKTLAGRYD---PLPPSISPEMQEIVTALLSSDPKRR 288
Score = 52.9 bits (127), Expect = 6e-07
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 897 LVLELLKGGELLDRIRQKGRCG--FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
LVL+ G+L I+ + + F E+EA + Q++ AVH +HS+ ++HRD+K N+L
Sbjct: 116 LVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANIL 175
Query: 955 LSGISGNLIKI 965
L S L+K+
Sbjct: 176 LC--SNGLVKL 184
Score = 31.8 bits (72), Expect = 2.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 272 PIPEDLSPDVADFISRLLVKDPRRRLGGGEL 302
P+P +SP++ + ++ LL DP+RR +L
Sbjct: 264 PLPPSISPEMQEIVTALLSSDPKRRPSSSKL 294
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 82.8 bits (205), Expect = 4e-17
Identities = 73/231 (31%), Positives = 103/231 (44%), Gaps = 47/231 (20%)
Query: 381 DKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKID----CS--EEINLLRACQGHPNIV 434
K LG+GSY+ + K TGQ A+K I + + + E +LL+ + H NIV
Sbjct: 8 KKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLK-HANIV 66
Query: 435 NLHCVFQDEVHT----YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
LH D +HT LV E L +L + G G + + + QL+ + + H
Sbjct: 67 TLH----DIIHTKKTLTLVFEYLDT-DLKQYMDDCGG-GLSMHNVRLFLFQLLRGLAYCH 120
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHT---PCFTLQYAAPEVLRQD 547
R V+HRDLKP+NLL S+ G+ +K+ DFG A K T TL Y P+VL
Sbjct: 121 QRRVLHRDLKPQNLLISE-RGE-LKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVL--- 175
Query: 548 KSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPF 598
LG + Y + D+W +G I Y M GR F
Sbjct: 176 ------------LG----------STEYSTSLDMWGVGCIFYEMATGRPLF 204
Score = 41.2 bits (97), Expect = 0.002
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 928 MRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
+ QL+ + + H R V+HRDLKP+NLL+S
Sbjct: 109 LFQLLRGLAYCHQRRVLHRDLKPQNLLIS 137
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 82.1 bits (203), Expect = 4e-17
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
HPN+V L V Y+V E + G L+D +R +GR T + + + ++
Sbjct: 59 HPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYL 118
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNI-KVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDK 548
+ VHRDL N+L S+ D + KV DFG A + + +++ APE LR+ K
Sbjct: 119 EEKNFVHRDLAARNVLVSE---DLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREKK 175
Query: 549 SGYDENCDLWSLGVIL 564
+ D+WS G++L
Sbjct: 176 --FSTKSDVWSFGILL 189
Score = 43.9 bits (104), Expect = 2e-04
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 893 VHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPEN 952
Y+V E + G L+D +R +GR T + + + ++ + VHRDL N
Sbjct: 73 NPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARN 132
Query: 953 LLLS 956
+L+S
Sbjct: 133 VLVS 136
>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 3. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. MAP4K3 is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. mTOR regulates ribosome
biogenesis and protein translation, and is frequently
deregulated in cancer.
Length = 267
Score = 82.0 bits (202), Expect = 4e-17
Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 26/206 (12%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE-------EINLLRACQGHPNIVNLHC 438
+G G+Y + +TG+ A+K+I K++ E EI +++ C+ H NIV
Sbjct: 17 IGSGTYGDVYKARNVNTGELAAIKVI--KLEPGEDFAVVQQEIIMMKDCK-HSNIVAYFG 73
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
+ ++ +E GG L D G +E++ + + R+ + ++++HS+G +HRD
Sbjct: 74 SYLRRDKLWICMEFCGGGSLQDIYHVTGP--LSESQIAYVSRETLQGLYYLHSKGKMHRD 131
Query: 499 LKPENLLFSDPAGDNIKVVDFGFAC------LKRES-LHTPCFTLQYAAPEVLR-QDKSG 550
+K N+L +D ++K+ DFG + KR+S + TP + APEV + K G
Sbjct: 132 IKGANILLTD--NGHVKLADFGVSAQITATIAKRKSFIGTP----YWMAPEVAAVERKGG 185
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYD 576
Y++ CD+W++G+ + + +D
Sbjct: 186 YNQLCDIWAVGITAIELAELQPPMFD 211
Score = 40.4 bits (94), Expect = 0.003
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++ +E GG L D G +E++ + + R+ + ++++HS+G +HRD+K N+LL
Sbjct: 82 WICMEFCGGGSLQDIYHVTGP--LSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILL 139
Query: 956 S 956
+
Sbjct: 140 T 140
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 82.4 bits (203), Expect = 4e-17
Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 32/219 (14%)
Query: 377 DMDL----DKAGI------LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEI----N 422
D+DL D AGI +G+G+Y + TGQ A+K++ D EEI N
Sbjct: 5 DIDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEIN 64
Query: 423 LLRACQGHPNIVNLHCVF-------QDEVHTYLVLELLKGGELLDRIRQ-KGRCGFTENE 474
+L+ H NI + F D+ +LV+E G + D ++ KG E+
Sbjct: 65 MLKKYSHHRNIATYYGAFIKKSPPGHDD-QLWLVMEFCGAGSVTDLVKNTKGNA-LKEDW 122
Query: 475 ASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGF-ACLKRESLHTPC 533
+ I R+++ + +H+ V+HRD+K +N+L ++ A +K+VDFG A L R
Sbjct: 123 IAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENA--EVKLVDFGVSAQLDRTVGRRNT 180
Query: 534 F--TLQYAAPEVLRQDK---SGYDENCDLWSLGVILVNV 567
F T + APEV+ D+ + YD D+WSLG+ + +
Sbjct: 181 FIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEM 219
Score = 40.8 bits (95), Expect = 0.002
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 896 YLVLELLKGGELLDRIRQ-KGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
+LV+E G + D ++ KG E+ + I R+++ + +H+ V+HRD+K +N+L
Sbjct: 95 WLVMEFCGAGSVTDLVKNTKGNA-LKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVL 153
Query: 955 LS 956
L+
Sbjct: 154 LT 155
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 82.2 bits (203), Expect = 4e-17
Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 30/210 (14%)
Query: 382 KAGILGDGSYSVCRRCVEKSTGQEYAVKII----------SRK---IDCSE-EINLLRAC 427
K ++G GS+ + S+G+ AVK + RK +D EI LL+
Sbjct: 4 KGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKEL 63
Query: 428 QGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVH 487
Q H NIV D H + LE + GG + + G F E +RQ++ ++
Sbjct: 64 Q-HENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYG--AFEETLVRNFVRQILKGLN 120
Query: 488 FMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA-CLKRESL------HTPCF--TLQY 538
++H+RG++HRD+K N+L + G IK+ DFG + L+ SL P ++ +
Sbjct: 121 YLHNRGIIHRDIKGANILVDNKGG--IKISDFGISKKLEANSLSTKTNGARPSLQGSVFW 178
Query: 539 AAPEVLRQDKSGYDENCDLWSLGVILVNVL 568
APEV++Q + Y D+WSLG ++V +L
Sbjct: 179 MAPEVVKQ--TSYTRKADIWSLGCLVVEML 206
Score = 42.5 bits (100), Expect = 6e-04
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
H + LE + GG + + G F E +RQ++ ++++H+RG++HRD+K N+
Sbjct: 80 HLNIFLEYVPGGSVAALLNNYG--AFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANI 137
Query: 954 LLSGISGNLIKI 965
L+ G IKI
Sbjct: 138 LVDNKGG--IKI 147
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 81.2 bits (200), Expect = 8e-17
Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 10/174 (5%)
Query: 416 DCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIR--QKGRCGFTEN 473
DC +EI+LL+ HPN++ F ++ +VLEL G+L I+ +K + E
Sbjct: 48 DCVKEIDLLKQLN-HPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPER 106
Query: 474 EASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFG---FACLKRESLH 530
+ QL +AV MHSR V+HRD+KP N+ + A +K+ D G F K + H
Sbjct: 107 TVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFIT--ATGVVKLGDLGLGRFFSSKTTAAH 164
Query: 531 TPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSL 584
+ T Y +PE R ++GY+ D+WSLG +L + Y + +L+SL
Sbjct: 165 SLVGTPYYMSPE--RIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSL 216
Score = 43.9 bits (103), Expect = 2e-04
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 897 LVLELLKGGELLDRIR--QKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
+VLEL G+L I+ +K + E + QL +AV MHSR V+HRD+KP N+
Sbjct: 79 IVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVF 138
Query: 955 LSG 957
++
Sbjct: 139 ITA 141
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent
protein Kinase 8-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK8-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK8, CDC2L6, and similar proteins. CDK8
functions as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDC2L6 also associates with
Mediator in complexes lacking CDK8. In VP16-dependent
transcriptional activation, CDK8 and CDC2L6 exerts
opposing effects by positive and negative regulation,
respectively, in similar conditions.
Length = 316
Score = 82.3 bits (204), Expect = 8e-17
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 30/207 (14%)
Query: 383 AGILGDGSYSVCRRCVEK--STGQEYAVKIISRKIDCSE--------EINLLRACQGHPN 432
G +G G+Y + K G+EYA+K + EI LLR + H N
Sbjct: 5 EGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELK-HEN 63
Query: 433 IVNLHCVFQD--EVHTYLVLE-----LLKGGELLDRIRQKGRCGFTENEASRIMRQLVAA 485
+V+L VF + + YL+ + L +++ RQ R + ++ Q++
Sbjct: 64 VVSLVEVFLEHADKSVYLLFDYAEHDLW---QIIKFHRQAKRVSIPPSMVKSLLWQILNG 120
Query: 486 VHFMHSRGVVHRDLKPENLLFS--DPAGDNIKVVDFGFACLKRESLHTP------CFTLQ 537
VH++HS V+HRDLKP N+L P +K+ D G A L L T+
Sbjct: 121 VHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIW 180
Query: 538 YAAPEVLRQDKSGYDENCDLWSLGVIL 564
Y APE+L + Y + D+W++G I
Sbjct: 181 YRAPELLLGARH-YTKAIDIWAIGCIF 206
Score = 48.4 bits (116), Expect = 8e-06
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 912 RQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
RQ R + ++ Q++ VH++HS V+HRDLKP N+L+ G
Sbjct: 98 RQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMG 143
Score = 33.0 bits (76), Expect = 0.69
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 177 EKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNLHCVF 218
G+EYA+K + EI LLR + H N+V+L VF
Sbjct: 23 NGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELK-HENVVSLVEVF 71
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 81.0 bits (200), Expect = 1e-16
Identities = 75/300 (25%), Positives = 123/300 (41%), Gaps = 53/300 (17%)
Query: 382 KAGILGDGSYSVCRRCVEKSTGQEYAVKII-----------SRKIDCSE----EINLLRA 426
K ++G G+Y + +TG+ AVK + SR+ D + EI L+
Sbjct: 5 KGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKD 64
Query: 427 CQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAV 486
H NIV E + + LE + GG + +R GR F E Q++ +
Sbjct: 65 LD-HLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGR--FEEQLVRFFTEQVLEGL 121
Query: 487 HFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQ 546
++HS+G++HRDLK +NLL D G K+ DFG + ++
Sbjct: 122 AYLHSKGILHRDLKADNLLV-DADG-ICKISDFG----------------------ISKK 157
Query: 547 DKSGYDENCDLWSLGVIL---VNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSR 603
YD + ++ G + V+ GY D+WSLG ++ M GR P+
Sbjct: 158 SDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPW----S 213
Query: 604 DDSALSIMARI--KEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQRIRMMRVKLTFHAF 661
D+ A++ M ++ K + +S A + + T+NP R +L H F
Sbjct: 214 DEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINP--DNRPTARELLQHPF 271
Score = 45.9 bits (109), Expect = 4e-05
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+ LE + GG + +R GR F E Q++ + ++HS+G++HRDLK +NLL+
Sbjct: 85 IFLEYVPGGSIGSCLRTYGR--FEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLV 141
Score = 36.7 bits (85), Expect = 0.047
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 267 LKTEPPIPED----LSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
++ PPIP D LSP DF++ +P R A EL +HPF
Sbjct: 227 KRSAPPIPPDVSMNLSPVALDFLNACFTINPDNR-----PTARELLQHPF 271
>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 4. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 4 (MST4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST4 is sometimes
referred to as MASK (MST3 and SOK1-related kinase). It
plays a role in mitogen-activated protein kinase (MAPK)
signaling during cytoskeletal rearrangement,
morphogenesis, and apoptosis. It influences cell growth
and transformation by modulating the extracellular
signal-regulated kinase (ERK) pathway. MST4 may also
play a role in tumor formation and progression. It
localizes in the Golgi apparatus by interacting with the
Golgi matrix protein GM130 and may play a role in cell
migration.
Length = 277
Score = 81.3 bits (200), Expect = 1e-16
Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 27/216 (12%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKI------DCSEEINLLRACQGHPNIVNLHCV 439
+G GS+ + ++ T Q A+KII + D +EI +L C P + +
Sbjct: 12 IGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS-PYVTKYYGS 70
Query: 440 FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDL 499
+ ++++E L GG LD +R F E + + ++++++ + ++HS +HRD+
Sbjct: 71 YLKGTKLWIIMEYLGGGSALDLLRAGP---FDEFQIATMLKEILKGLDYLHSEKKIHRDI 127
Query: 500 KPENLLFSDPAGDNIKVVDFGFAC------LKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
K N+L S+ ++K+ DFG A +KR + F + APEV++Q S YD
Sbjct: 128 KAANVLLSEQG--DVKLADFGVAGQLTDTQIKRNTFVGTPF---WMAPEVIQQ--SAYDS 180
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILY 589
D+WSLG+ + + + G N D+ + V+
Sbjct: 181 KADIWSLGITAIELAK----GEPPNSDMHPMRVLFL 212
Score = 42.3 bits (99), Expect = 6e-04
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++++E L GG LD +R F E + + ++++++ + ++HS +HRD+K N+LL
Sbjct: 78 WIIMEYLGGGSALDLLRAGP---FDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLL 134
Query: 956 S 956
S
Sbjct: 135 S 135
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces
cerevisiae, Pmk1 from Schizosaccharomyces pombe, and
similar proteins. MAPKs are important mediators of
cellular responses to extracellular signals. MPK1 (also
called Slt2) and Pmk1 (also called Spm1) are
stress-activated MAPKs that regulate the cell wall
integrity (CWI) pathway, and are therefore important in
the maintainance of cell shape, cell wall construction,
morphogenesis, and ion homeostasis. MPK1 is activated in
response to cell wall stress including heat stimulation,
osmotic shock, UV irradiation, and any agents that
interfere with cell wall biogenesis such as chitin
antagonists, caffeine, or zymolase. MPK1 is regulated by
the MAP2Ks Mkk1/2, which are regulated by the MAP3K
Bck1. Pmk1 is also activated by multiple stresses
including elevated temperatures, hyper- or hypotonic
stress, glucose deprivation, exposure to cell-wall
damaging compounds, and oxidative stress. It is
regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 81.3 bits (201), Expect = 2e-16
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 26/203 (12%)
Query: 386 LGDGSYS-VCR-RCVEKSTGQEYAVK----IISRKIDCSE---EINLLRACQGHPNIVNL 436
LG G+Y VC R E S + A+K + S+KI E+ LLR +GH NI L
Sbjct: 8 LGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCL 67
Query: 437 H---CVFQDEVH-TYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+ VF + YL EL++ +L IR T+ + Q++ + ++HS
Sbjct: 68 YDMDIVFPGNFNELYLYEELMEA-DLHQIIRSGQP--LTDAHFQSFIYQILCGLKYIHSA 124
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFAC-----LKRESLHTPCF--TLQYAAPEVLR 545
V+HRDLKP NLL + A +K+ DFG A + + T Y APE++
Sbjct: 125 NVLHRDLKPGNLLVN--ADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIML 182
Query: 546 QDKSGYDENCDLWSLGVILVNVL 568
+S Y + D+WS+G IL +L
Sbjct: 183 SFQS-YTKAIDVWSVGCILAELL 204
Score = 37.4 bits (87), Expect = 0.028
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLL 954
Q++ + ++HS V+HRDLKP NLL
Sbjct: 113 QILCGLKYIHSANVLHRDLKPGNLL 137
Score = 33.5 bits (77), Expect = 0.47
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 124 LGDGSYS-VCR-RCVEKSTGQEYAVK----IISRKIDCSE---EINLLRACQGHPNI 171
LG G+Y VC R E S + A+K + S+KI E+ LLR +GH NI
Sbjct: 8 LGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNI 64
Score = 32.0 bits (73), Expect = 1.5
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 263 YRRILKTEPPIP-----EDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVID 317
Y R L P P + +P D + +LL DP +R + EE HP+ +
Sbjct: 245 YIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKR-----ISVEEALEHPYLAI-- 297
Query: 318 WDD 320
W D
Sbjct: 298 WHD 300
Score = 30.8 bits (70), Expect = 3.2
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 174 RCVEKSTGQEYAVK----IISRKIDCSE---EINLLRACQGHPNIVNLHCVFQDEVIDWD 226
R E S + A+K + S+KI E+ LLR +GH NI L+ D I +
Sbjct: 20 RNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLY----DMDIVFP 75
Query: 227 DFSRGIEC 234
+
Sbjct: 76 GNFNELYL 83
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 79.7 bits (196), Expect = 3e-16
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 23/196 (11%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKI------DCSEEINLLRACQGHPNIVNLHCV 439
+G GS+ + ++ T + A+KII + D +EI +L C P + +
Sbjct: 12 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS-PYVTKYYGS 70
Query: 440 FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDL 499
+ + ++++E L GG LD + E + + I+R+++ + ++HS +HRD+
Sbjct: 71 YLKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYLHSEKKIHRDI 127
Query: 500 KPENLLFSDPAGDNIKVVDFGFAC------LKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
K N+L S+ +K+ DFG A +KR + F + APEV++Q S YD
Sbjct: 128 KAANVLLSEHG--EVKLADFGVAGQLTDTQIKRNTFVGTPF---WMAPEVIKQ--SAYDS 180
Query: 554 NCDLWSLGVILVNVLR 569
D+WSLG+ + + +
Sbjct: 181 KADIWSLGITAIELAK 196
Score = 41.6 bits (97), Expect = 0.001
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++++E L GG LD + E + + I+R+++ + ++HS +HRD+K N+LL
Sbjct: 78 WIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLL 134
Query: 956 S 956
S
Sbjct: 135 S 135
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 79.0 bits (195), Expect = 6e-16
Identities = 82/295 (27%), Positives = 122/295 (41%), Gaps = 50/295 (16%)
Query: 381 DKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKID-------CSEEINLLRACQGHPNI 433
+K +G+G+Y + + T + A+K + D EI LL+ + H NI
Sbjct: 3 EKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELK-HKNI 61
Query: 434 VNLHCVFQDEVHTYLVLEL----LKGGELLDRIRQKGRCGFTENEASR-IMRQLVAAVHF 488
V L+ V + LV E LK + D G + E + M QL+ + F
Sbjct: 62 VRLYDVLHSDKKLTLVFEYCDQDLK--KYFDSCN-----GDIDPEIVKSFMFQLLKGLAF 114
Query: 489 MHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTP--CF-----TLQYAAP 541
HS V+HRDLKP+NLL + +K+ DFG A + P C+ TL Y P
Sbjct: 115 CHSHNVLHRDLKPQNLLINKNG--ELKLADFGLA----RAFGIPVRCYSAEVVTLWYRPP 168
Query: 542 EVLRQDKSGYDENCDLWSLGVI---LVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPF 598
+VL K Y + D+WS G I L N R G D + L + +L T P
Sbjct: 169 DVLFGAK-LYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPG 227
Query: 599 HARSRDDSALSIMARIKEGQFNFDAEAWSTV----SSEAKELTKSLLTVNPAQRI 649
++ D + + V +S ++L ++LL NP QRI
Sbjct: 228 VSKLPDYKPYPMYPATT---------SLVNVVPKLNSTGRDLLQNLLVCNPVQRI 273
Score = 42.0 bits (99), Expect = 9e-04
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 928 MRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
M QL+ + F HS V+HRDLKP+NLL++
Sbjct: 105 MFQLLKGLAFCHSHNVLHRDLKPQNLLINK 134
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The p38 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. p38 kinases are
mitogen-activated protein kinases (MAPKs), serving as
important mediators of cellular responses to
extracellular signals. They function in the regulation
of the cell cycle, cell development, cell
differentiation, senescence, tumorigenesis, apoptosis,
pain development and pain progression, and immune
responses. p38 kinases are activated by the MAPK kinases
MKK3 and MKK6, which in turn are activated by upstream
MAPK kinase kinases including TAK1, ASK1, and MLK3, in
response to cellular stresses or inflammatory cytokines.
p38 substrates include other protein kinases and factors
that regulate transcription, nuclear export, mRNA
stability and translation. p38 kinases are drug targets
for the inflammatory diseases psoriasis, rheumatoid
arthritis, and chronic pulmonary disease. Vertebrates
contain four isoforms of p38, named alpha, beta, gamma,
and delta, which show varying substrate specificity and
expression patterns. p38alpha and p38beta are
ubiquitously expressed, p38gamma is predominantly found
in skeletal muscle, and p38delta is found in the heart,
lung, testis, pancreas, and small intestine.
Length = 343
Score = 80.0 bits (198), Expect = 6e-16
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 47/227 (20%)
Query: 386 LGDGSY-SVCRRCVEKSTGQEYAVKIISRKIDCSE-------EINLLRACQGHPNIVNLH 437
+G G+Y VC + TG++ A+K +SR + E+ LL+ H N++ L
Sbjct: 23 VGSGAYGQVCS-AFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLK-HMDHENVIGLL 80
Query: 438 CVFQDEVHT------YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS 491
VF YLV L+ G +L + ++ + +++ ++ Q++ + ++HS
Sbjct: 81 DVFTPASSLEDFQDVYLVTHLM-GADLNNIVKCQK---LSDDHIQFLVYQILRGLKYIHS 136
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGY 551
G++HRDLKP N+ ++ +K++DFG A + + T Y APE++
Sbjct: 137 AGIIHRDLKPSNIAVNEDC--ELKILDFGLARHTDDEMTGYVATRWYRAPEIM------- 187
Query: 552 DENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPF 598
L Y++ D+WS+G I+ +L G+ F
Sbjct: 188 -----LN-------------WMHYNQTVDIWSVGCIMAELLTGKTLF 216
Score = 43.8 bits (104), Expect = 3e-04
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
YLV L+ G +L + ++ + +++ ++ Q++ + ++HS G++HRDLKP N+
Sbjct: 96 YLVTHLM-GADLNNIVKCQK---LSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNI 149
Score = 31.5 bits (72), Expect = 2.0
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 278 SPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
+P D + ++LV DP +R + A E HP+
Sbjct: 271 NPLAIDLLEKMLVLDPDKR-----ITAAEALAHPYL 301
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 6.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 6, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK6 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK6 may play a role in stress responses
through its activation by the mitogen-activated protein
kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6
is highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6
may play a role in the regulation of motility.
Length = 297
Score = 79.3 bits (195), Expect = 6e-16
Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 53/275 (19%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS-RKIDCSE----EINLLRACQGHPNIVNLHCVF 440
+G+GS + EK +G++ AVK++ RK E E+ ++R Q H N+V ++ +
Sbjct: 29 IGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQ-HQNVVEMYKSY 87
Query: 441 QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 500
++++E L+GG L D + Q E + + + ++ A+ ++HS+GV+HRD+K
Sbjct: 88 LVGEELWVLMEFLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQGVIHRDIK 144
Query: 501 PENLLFSDPAGDNIKVVDFGFACL------KRESL-HTPCFTLQYAAPEVLRQDKSGYDE 553
+++L + +K+ DFGF KR+SL TP + APEV+
Sbjct: 145 SDSILLT--LDGRVKLSDFGFCAQISKDVPKRKSLVGTP----YWMAPEVI--------- 189
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
++ Y D+WSLG+++ M+ G P+ + DS + M R
Sbjct: 190 -----------------SRTPYGTEVDIWSLGIMVIEMVDGEPPYFS----DSPVQAMKR 228
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+++ + +S ++ + +LT P +R
Sbjct: 229 LRDSP-PPKLKNAHKISPVLRDFLERMLTREPQER 262
Score = 44.2 bits (104), Expect = 2e-04
Identities = 19/61 (31%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++++E L+GG L D + Q E + + + ++ A+ ++HS+GV+HRD+K +++LL
Sbjct: 94 WVLMEFLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILL 150
Query: 956 S 956
+
Sbjct: 151 T 151
Score = 34.6 bits (79), Expect = 0.23
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 261 IQYRRILKTEPPIP----EDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
+Q + L+ PP +SP + DF+ R+L ++P+ R A+EL HPF
Sbjct: 223 VQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQER-----ATAQELLDHPFL 274
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 78.1 bits (192), Expect = 7e-16
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 12/189 (6%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIIS------RKIDCSEEINLLRACQGHPNIVNLHC 438
+G+GS+ KS + +K I ++ + S++ +L A HPNIV
Sbjct: 7 KIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFA 66
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
FQ+ ++V+E GG+L+ RI ++ F+E++ Q+ + +H R ++HRD
Sbjct: 67 SFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRD 126
Query: 499 LKPENLLFSDPAGDNIKVVDFGFACLKRESL---HTPCFTLQYAAPEVLRQDKSGYDENC 555
+K +N+ S G K+ DFG A +S+ +T T Y +PE+ Q++ Y+
Sbjct: 127 IKSQNIFLSK-NGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEIC-QNRP-YNNKT 183
Query: 556 DLWSLGVIL 564
D+WSLG +L
Sbjct: 184 DIWSLGCVL 192
Score = 48.0 bits (114), Expect = 9e-06
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 873 LLGPITRARRRTFVNRSRYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLV 932
LL + TF + N ++V+E GG+L+ RI ++ F+E++ Q+
Sbjct: 52 LLAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQIS 111
Query: 933 AAVHFMHSRGVVHRDLKPENLLLS 956
+ +H R ++HRD+K +N+ LS
Sbjct: 112 LGLKHIHDRKILHRDIKSQNIFLS 135
>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase (JNK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others. They
are also essential regulators of physiological and
pathological processes and are involved in the
pathogenesis of several diseases such as diabetes,
atherosclerosis, stroke, Parkinson's and Alzheimer's.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3) that are alternatively spliced to produce at
least 10 isoforms. JNKs are specifically activated by
the MAPK kinases MKK4 and MKK7, which are in turn
activated by upstream MAPK kinase kinases as a result of
different stimuli including stresses such as ultraviolet
(UV) irradiation, hyperosmolarity, heat shock, or
cytokines. JNKs activate a large number of different
substrates based on specific stimulus, cell type, and
cellular condition, and may be implicated in seemingly
contradictory functions.
Length = 353
Score = 79.8 bits (197), Expect = 8e-16
Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 61/225 (27%)
Query: 402 TGQEYAVKIISRKID-------CSEEINLLRACQGHPNIVNLHCVF------QDEVHTYL 448
TGQ A+K +SR E+ L++ H NI+ L VF ++ YL
Sbjct: 40 TGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVN-HKNIIGLLNVFTPQKSLEEFQDVYL 98
Query: 449 VLELLKGG------ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPE 502
V+EL+ LD R S ++ Q++ + +HS G++HRDLKP
Sbjct: 99 VMELMDANLCQVIQMDLDHER-----------MSYLLYQMLCGIKHLHSAGIIHRDLKPS 147
Query: 503 NLLFSDPAGDNIKVVDFGFACLKRES-LHTP-CFTLQYAAPEVLRQDKSGYDENCDLWSL 560
N++ +K++DFG A S + TP T Y APEV+ L
Sbjct: 148 NIVVKSDC--TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVI---------------L 190
Query: 561 GVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDD 605
G+ GY EN D+WS+G I+ M+ G V F D
Sbjct: 191 GM-----------GYKENVDIWSVGCIMGEMIRGTVLFPGTDHID 224
Score = 37.4 bits (87), Expect = 0.034
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 17/66 (25%)
Query: 894 HTYLVLELLKGG------ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 947
YLV+EL+ LD R S ++ Q++ + +HS G++HRD
Sbjct: 95 DVYLVMELMDANLCQVIQMDLDHER-----------MSYLLYQMLCGIKHLHSAGIIHRD 143
Query: 948 LKPENL 953
LKP N+
Sbjct: 144 LKPSNI 149
Score = 32.4 bits (74), Expect = 1.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 274 PEDLSPDVA-DFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAP 329
L A D +S++LV DP +R + ++ +HP+ NV W D + P P
Sbjct: 279 HNKLKASQARDLLSKMLVIDPEKR-----ISVDDALQHPYINV--WYDPSEVEAPPP 328
>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 1.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
Inactivation of LATS1 in mice results in the development
of various tumors, including sarcomas and ovarian
cancer. Promoter methylation, loss of heterozygosity,
and missense mutations targeting the LATS1 gene have
also been found in human sarcomas and ovarian cancers.
In addition, decreased expression of LATS1 is associated
with an aggressive phenotype and poor prognosis. LATS1
induces G2 arrest and promotes cytokinesis. It may be a
component of the mitotic exit network in higher
eukaryotes.
Length = 382
Score = 80.0 bits (197), Expect = 9e-16
Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 40/236 (16%)
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+V L+ FQD+ + Y V++ + GG+++ + + G F E+ A + +L AV +H
Sbjct: 63 VVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGI--FPEDLARFYIAELTCAVESVHKM 120
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYD 552
G +HRD+KP+N+L D G +IK+ DFG C H + Y + + +RQD +
Sbjct: 121 GFIHRDIKPDNILI-DRDG-HIKLTDFGL-CTGFRWTHDSKY---YQSGDHVRQDSMDFS 174
Query: 553 ------ENCDLWS-LGVILVNVLRQD---------------------KSGYDENCDLWSL 584
NC L + RQ ++GY + CD WS+
Sbjct: 175 NEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV 234
Query: 585 GVILYTMLCGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTKSL 640
GVILY ML G+ PF A+ + L ++ Q + + +S EA +L L
Sbjct: 235 GVILYEMLVGQPPFLAQ----TPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKL 286
Score = 54.6 bits (131), Expect = 1e-07
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 272 PIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWD-DLATKRIPAPF 330
P LSP+ +D I +L + P RLG A+E+K HPFF ID+ DL ++ AP+
Sbjct: 270 PPQAKLSPEASDLIIKL-CRGPEDRLGKN--GADEIKAHPFFKTIDFSSDL--RQQSAPY 324
Query: 331 VPKISNELDVSNF 343
+PKI++ D SNF
Sbjct: 325 IPKITHPTDTSNF 337
Score = 43.1 bits (101), Expect = 5e-04
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y V++ + GG+++ + + G F E+ A + +L AV +H G +HRD+KP+N+L+
Sbjct: 77 YFVMDYIPGGDMMSLLIRMGI--FPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 134
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). TNIK is an effector of Rap2, a small GTP-binding
protein from the Ras family. TNIK specifically activates
the c-Jun N-terminal kinase (JNK) pathway and plays a
role in regulating the actin cytoskeleton.
Length = 272
Score = 78.2 bits (192), Expect = 9e-16
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 28/211 (13%)
Query: 381 DKAGI------LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEI----NLLRACQGH 430
D AGI +G+G+Y + TGQ A+K++ D EEI N+L+ H
Sbjct: 3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHH 62
Query: 431 PNIVNLHCVF--------QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQL 482
NI + F D++ +LV+E G + D I+ E + I R++
Sbjct: 63 RNIATYYGAFIKKNPPGMDDQL--WLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREI 120
Query: 483 VAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGF-ACLKRESLHTPCF--TLQYA 539
+ + +H V+HRD+K +N+L ++ A +K+VDFG A L R F T +
Sbjct: 121 LRGLSHLHQHKVIHRDIKGQNVLLTENA--EVKLVDFGVSAQLDRTVGRRNTFIGTPYWM 178
Query: 540 APEVLRQDK---SGYDENCDLWSLGVILVNV 567
APEV+ D+ + YD DLWSLG+ + +
Sbjct: 179 APEVIACDENPDATYDFKSDLWSLGITAIEM 209
Score = 39.3 bits (91), Expect = 0.007
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+LV+E G + D I+ E + I R+++ + +H V+HRD+K +N+LL
Sbjct: 85 WLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLL 144
Query: 956 S 956
+
Sbjct: 145 T 145
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 77.8 bits (191), Expect = 1e-15
Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 24/206 (11%)
Query: 375 QYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKI--DCS---EEINLLRACQG 429
Q+D +L + +G G+Y + TG+ AVKII + D S +EI +++ C+
Sbjct: 8 QHDYELIQR--VGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECK- 64
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
H NIV + ++ +E GG L D G +E + + + R+ + + ++
Sbjct: 65 HCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGP--LSELQIAYVCRETLQGLAYL 122
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFAC------LKRES-LHTPCFTLQYAAPE 542
HS+G +HRD+K N+L +D GD +K+ DFG A KR+S + TP + APE
Sbjct: 123 HSKGKMHRDIKGANILLTD-NGD-VKLADFGVAAKITATIAKRKSFIGTP----YWMAPE 176
Query: 543 VLRQDKS-GYDENCDLWSLGVILVNV 567
V +K+ GY++ CD+W++G+ + +
Sbjct: 177 VAAVEKNGGYNQLCDIWAVGITAIEL 202
Score = 36.5 bits (84), Expect = 0.045
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++ +E GG L D G +E + + + R+ + + ++HS+G +HRD+K N+LL
Sbjct: 82 WICMEYCGGGSLQDIYHVTGP--LSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILL 139
Query: 956 S 956
+
Sbjct: 140 T 140
>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-2 is also
referred to as ALS2CR7 (amyotrophic lateral sclerosis 2
(juvenile) chromosome region candidate 7). It may be
associated with amyotrophic lateral sclerosis 2 (ALS2),
an autosomal recessive form of juvenile ALS. The
function of PFTAIRE-2 is not yet known.
Length = 291
Score = 78.5 bits (193), Expect = 1e-15
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKID------CSEEINLLRACQGHPNIVNLHCV 439
LG+GSY+ + + + GQ A+K+IS K + E +LL+ + H NIV LH +
Sbjct: 13 LGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLK-HANIVLLHDI 71
Query: 440 FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDL 499
+ V E + I+ G G M QL+ + ++H + ++HRDL
Sbjct: 72 IHTKETLTFVFEYMHTDLAQYMIQHPG--GLHPYNVRLFMFQLLRGLAYIHGQHILHRDL 129
Query: 500 KPENLLFSDPAGDNIKVVDFGFACLKR---ESLHTPCFTLQYAAPEVLRQDKSGYDENCD 556
KP+NLL S +K+ DFG A K ++ + TL Y P+VL + Y D
Sbjct: 130 KPQNLLISYLG--ELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVL-LGATDYSSALD 186
Query: 557 LWSLGVILVNVLR 569
+W G I + +L+
Sbjct: 187 IWGAGCIFIEMLQ 199
Score = 40.3 bits (94), Expect = 0.003
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 928 MRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
M QL+ + ++H + ++HRDLKP+NLL+S
Sbjct: 109 MFQLLRGLAYIHGQHILHRDLKPQNLLIS 137
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate
gene responsible for pseudopseudohypoparathyroidism
(PPHP), a disease that shares features with the Albright
hereditary osteodystrophy (AHO) phenotype.
Length = 277
Score = 78.2 bits (192), Expect = 1e-15
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 27/215 (12%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKI------DCSEEINLLRACQGHPNIVNLHCV 439
+G GS+ + ++ T + A+KII + D +EI +L C P I +
Sbjct: 12 IGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS-PYITRYYGS 70
Query: 440 FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDL 499
+ ++++E L GG LD ++ E + I+R+++ + ++HS +HRD+
Sbjct: 71 YLKGTKLWIIMEYLGGGSALDLLKPGP---LEETYIATILREILKGLDYLHSERKIHRDI 127
Query: 500 KPENLLFSDPAGDNIKVVDFGFAC------LKRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
K N+L S+ GD +K+ DFG A +KR + F + APEV++Q S YD
Sbjct: 128 KAANVLLSE-QGD-VKLADFGVAGQLTDTQIKRNTFVGTPF---WMAPEVIKQ--SAYDF 180
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVIL 588
D+WSLG+ + + + G N DL + V+
Sbjct: 181 KADIWSLGITAIELAK----GEPPNSDLHPMRVLF 211
Score = 40.0 bits (93), Expect = 0.004
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++++E L GG LD ++ E + I+R+++ + ++HS +HRD+K N+LL
Sbjct: 78 WIIMEYLGGGSALDLLKPGP---LEETYIATILREILKGLDYLHSERKIHRDIKAANVLL 134
Query: 956 S 956
S
Sbjct: 135 S 135
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 79.0 bits (194), Expect = 2e-15
Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 29/246 (11%)
Query: 423 LLRACQGHPNIVNLHCVF------QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEAS 476
+L C H NI++L VF ++ YLV+EL+ L I+ + S
Sbjct: 68 VLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIQME----LDHERMS 122
Query: 477 RIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRES-LHTP-CF 534
++ Q++ + +HS G++HRDLKP N++ +K++DFG A S + TP
Sbjct: 123 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC--TLKILDFGLARTAGTSFMMTPYVV 180
Query: 535 TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDK--SGYDENCDLWSLGVILYTML 592
T Y APEV+ GY EN D+WS+G I+ ++R G D D W+ +
Sbjct: 181 TRYYRAPEVIL--GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY-IDQWNKVIEQLGTP 237
Query: 593 CGR--------VPFHARSRDDSA-LSIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTV 643
C V + +R A L+ + F D+E +S+A++L +L +
Sbjct: 238 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 297
Query: 644 NPAQRI 649
+PA+RI
Sbjct: 298 DPAKRI 303
Score = 38.1 bits (88), Expect = 0.016
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV+EL+ L I+ + S ++ Q++ + +HS G++HRDLKP N+++
Sbjct: 98 YLVMELMDA-NLCQVIQME----LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV 152
Score = 31.2 bits (70), Expect = 2.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 283 DFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAP 329
D +S++LV DP +R + +E +HP+ NV W D A P P
Sbjct: 289 DLLSKMLVIDPAKR-----ISVDEALQHPYINV--WYDPAEVEAPPP 328
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 77.7 bits (191), Expect = 2e-15
Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 21/201 (10%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRK-------IDCSEEINLLRACQG--HPNIVNL 436
+G G+Y + + +G A+K + + + E+ LL+ + HPNIV L
Sbjct: 8 IGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRL 67
Query: 437 HCV-----FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS 491
V E LV E + +L + + G +MRQ + + F+H+
Sbjct: 68 MDVCATSRTDRETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHA 126
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLK--RESLHTPCFTLQYAAPEVLRQDKS 549
+VHRDLKPEN+L + +G +K+ DFG A + + +L TL Y APEVL Q S
Sbjct: 127 NCIVHRDLKPENILVT--SGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQ--S 182
Query: 550 GYDENCDLWSLGVILVNVLRQ 570
Y D+WS+G I + R+
Sbjct: 183 TYATPVDMWSVGCIFAEMFRR 203
Score = 44.6 bits (105), Expect = 2e-04
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 927 IMRQLVAAVHFMHSRGVVHRDLKPENLLLSGISGNLIKI 965
+MRQ + + F+H+ +VHRDLKPEN+L++ SG +K+
Sbjct: 113 LMRQFLRGLDFLHANCIVHRDLKPENILVT--SGGQVKL 149
>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-1 is
widely expressed except in the spleen and thymus. It is
highly expressed in the brain, heart, pancreas, testis,
and ovary, and is localized in the cytoplasm. It is
regulated by cyclin D3 and is inhibited by the p21 cell
cycle inhibitor. It has also been shown to interact with
the membrane-associated cyclin Y, which recruits the
protein to the plasma membrane.
Length = 303
Score = 78.2 bits (192), Expect = 2e-15
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 15/193 (7%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRK------IDCSEEINLLRACQGHPNIVNLHCV 439
LG+GSY+ + K G+ A+K+I + E +LL+ + H NIV LH +
Sbjct: 13 LGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLK-HANIVLLHDI 71
Query: 440 FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDL 499
+ LV E + L + K G + QL+ + ++H R ++HRDL
Sbjct: 72 IHTKETLTLVFEYVHTD--LCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDL 129
Query: 500 KPENLLFSDPAGDNIKVVDFGFACLKRESLHT---PCFTLQYAAPEVLRQDKSGYDENCD 556
KP+NLL SD +K+ DFG A K HT TL Y P+VL + Y D
Sbjct: 130 KPQNLLISDTG--ELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVL-LGSTEYSTCLD 186
Query: 557 LWSLGVILVNVLR 569
+W +G I V +++
Sbjct: 187 MWGVGCIFVEMIQ 199
Score = 38.1 bits (88), Expect = 0.016
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 918 GFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
G + QL+ + ++H R ++HRDLKP+NLL+S
Sbjct: 99 GLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLIS 137
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 76.8 bits (189), Expect = 2e-15
Identities = 68/277 (24%), Positives = 117/277 (42%), Gaps = 54/277 (19%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS-------RKIDCSEEINLLRACQGHPNIVNLHC 438
+G+GS+ K G++Y +K I+ + + +E+ +L + HPNIV
Sbjct: 8 IGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVL-SNMKHPNIVQYQE 66
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
F++ + Y+V++ +GG+L +I + F E++ Q+ A+ +H R ++HRD
Sbjct: 67 SFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRD 126
Query: 499 LKPENLLFSDPAGDNIKVVDFGFAC-------LKRESLHTPCFTLQYAAPEVLRQDKSGY 551
+K +N+ + IK+ DFG A L R + TP Y +PE+
Sbjct: 127 IKSQNIFLT--KDGTIKLGDFGIARVLNSTVELARTCIGTP----YYLSPEIC------- 173
Query: 552 DENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIM 611
EN Y+ D+W+LG +LY M + F A + + L I+
Sbjct: 174 -EN------------------RPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKII 214
Query: 612 ARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
G + S S + + L L NP R
Sbjct: 215 ----RGSY---PPVSSHYSYDLRNLVSQLFKRNPRDR 244
Score = 44.1 bits (104), Expect = 2e-04
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 892 NVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPE 951
N + Y+V++ +GG+L +I + F E++ Q+ A+ +H R ++HRD+K +
Sbjct: 71 NGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQ 130
Query: 952 NLLLS 956
N+ L+
Sbjct: 131 NIFLT 135
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 76.5 bits (188), Expect = 3e-15
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 402 TGQEYAVKIISRKIDCS-----EEINLLRACQGHPNIVNLHCVFQDEVHT--YLVLELLK 454
TGQ+ AVK I K D + EE ++ H N+V L V +H Y+V+EL+
Sbjct: 28 TGQKVAVKNI--KCDVTAQAFLEETAVMTKLH-HKNLVRLLGVI---LHNGLYIVMELMS 81
Query: 455 GGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNI 514
G L++ +R +GR + + + + + ++ S+ +VHRDL N+L S+ D +
Sbjct: 82 KGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSE---DGV 138
Query: 515 -KVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKS 573
KV DFG A + + +++ APE L+ K + D+WS GV+L V ++
Sbjct: 139 AKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKK--FSSKSDVWSYGVLLWEVFSYGRA 196
Query: 574 GY 575
Y
Sbjct: 197 PY 198
Score = 38.8 bits (90), Expect = 0.009
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V+EL+ G L++ +R +GR + + + + + ++ S+ +VHRDL N+L+
Sbjct: 74 YIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILV 133
Query: 956 S 956
S
Sbjct: 134 S 134
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 77.1 bits (189), Expect = 4e-15
Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS-----RKIDCSEEINLLRACQGHPNIVNLHCVF 440
+G G+ ++ +TGQE A+K ++ +K EI ++R + +PNIVN +
Sbjct: 27 IGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENK-NPNIVNYLDSY 85
Query: 441 QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 500
++V+E L GG L D + + C E + + + R+ + A+ F+HS V+HRD+K
Sbjct: 86 LVGDELWVVMEYLAGGSLTDVVTET--C-MDEGQIAAVCRECLQALDFLHSNQVIHRDIK 142
Query: 501 PENLLFSDPAGDNIKVVDFGFACL---KRESLHTPCFTLQYAAPEVLRQDKSGYDENCDL 557
+N+L ++K+ DFGF ++ T T + APEV+ + Y D+
Sbjct: 143 SDNILLG--MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV--TRKAYGPKVDI 198
Query: 558 WSLGVILVNVLRQDKSGYDEN 578
WSLG++ + ++ + +EN
Sbjct: 199 WSLGIMAIEMVEGEPPYLNEN 219
Score = 45.9 bits (108), Expect = 5e-05
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V+E L GG L D + + C E + + + R+ + A+ F+HS V+HRD+K +N+LL
Sbjct: 92 WVVMEYLAGGSLTDVVTET--C-MDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILL 148
Query: 956 SGISGNL 962
G+ G++
Sbjct: 149 -GMDGSV 154
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 76.7 bits (188), Expect = 4e-15
Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 24/205 (11%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS-----RKIDCSEEINLLRACQGHPNIVNLHCVF 440
+G G+ ++ +TGQE A++ ++ +K EI ++R + +PNIVN +
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENK-NPNIVNYLDSY 86
Query: 441 QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 500
++V+E L GG L D + + C E + + + R+ + A+ F+HS V+HRD+K
Sbjct: 87 LVGDELWVVMEYLAGGSLTDVVTET--C-MDEGQIAAVCRECLQALEFLHSNQVIHRDIK 143
Query: 501 PENLLFSDPAGDNIKVVDFGFACL-------KRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
+N+L ++K+ DFGF + + TP + APEV+ + Y
Sbjct: 144 SDNILLG--MDGSVKLTDFGFCAQITPEQSKRSTMVGTP----YWMAPEVV--TRKAYGP 195
Query: 554 NCDLWSLGVILVNVLRQDKSGYDEN 578
D+WSLG++ + ++ + +EN
Sbjct: 196 KVDIWSLGIMAIEMIEGEPPYLNEN 220
Score = 46.3 bits (109), Expect = 4e-05
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V+E L GG L D + + C E + + + R+ + A+ F+HS V+HRD+K +N+LL
Sbjct: 93 WVVMEYLAGGSLTDVVTET--C-MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILL 149
Query: 956 SGISGNL 962
G+ G++
Sbjct: 150 -GMDGSV 155
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in
brain, kidney, and intestine. It is elevated in
Alzheimer's disease (AD) and has been shown to associate
with paired helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma
cells, PCTAIRE-3 induces cell cycle arrest and cell
death.
Length = 288
Score = 76.6 bits (188), Expect = 5e-15
Identities = 68/230 (29%), Positives = 102/230 (44%), Gaps = 47/230 (20%)
Query: 382 KAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKID----CS--EEINLLRACQGHPNIVN 435
K LG+G+Y+ + K T A+K I + + C+ E++LL+ + H NIV
Sbjct: 9 KLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLK-HANIVT 67
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCG--FTENEASRIMRQLVAAVHFMHSRG 493
LH + E LV E L D + CG + + M QL+ + + H R
Sbjct: 68 LHDIIHTERCLTLVFEYLDS----DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRK 123
Query: 494 VVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF-----TLQYAAPEVLRQDK 548
++HRDLKP+NLL ++ +K+ DFG A + +S+ T + TL Y P+VL
Sbjct: 124 ILHRDLKPQNLLINEKG--ELKLADFGLA--RAKSVPTKTYSNEVVTLWYRPPDVL---- 175
Query: 549 SGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPF 598
LG + Y D+W +G ILY M GR F
Sbjct: 176 -----------LG----------STEYSTPIDMWGVGCILYEMATGRPMF 204
Score = 37.7 bits (87), Expect = 0.019
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 928 MRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
M QL+ + + H R ++HRDLKP+NLL++
Sbjct: 109 MFQLLRGLSYCHKRKILHRDLKPQNLLIN 137
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 76.7 bits (189), Expect = 6e-15
Identities = 65/206 (31%), Positives = 95/206 (46%), Gaps = 30/206 (14%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKII-------SRKIDCSEEINLLRACQGHPNIVNLH 437
++G GSY V ++ TG++ A+K I S EI LLR + HP+IV +
Sbjct: 7 VIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLR-HPDIVEIK 65
Query: 438 CV--------FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
+ F+D Y+V EL+ +L I K T + QL+ A+ ++
Sbjct: 66 HIMLPPSRREFKD---IYVVFELM-ESDLHQVI--KANDDLTPEHHQFFLYQLLRALKYI 119
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF------TLQYAAPEV 543
H+ V HRDLKP+N+L + A +K+ DFG A + T F T Y APE+
Sbjct: 120 HTANVFHRDLKPKNILAN--ADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPEL 177
Query: 544 LRQDKSGYDENCDLWSLGVILVNVLR 569
S Y D+WS+G I VL
Sbjct: 178 CGSFFSKYTPAIDIWSIGCIFAEVLT 203
Score = 40.1 bits (94), Expect = 0.004
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLL 954
QL+ A+ ++H+ V HRDLKP+N+L
Sbjct: 111 QLLRALKYIHTANVFHRDLKPKNIL 135
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 6.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 6 (CDK6) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK6
is regulated by D-type cyclins and INK4 inhibitors. It
is active towards the retinoblastoma (pRb) protein,
implicating it to function in regulating the early G1
phase of the cell cycle. It is expressed ubiquitously
and is localized in the cytoplasm. It is also present in
the ruffling edge of spreading fibroblasts and may play
a role in cell spreading. It binds to the p21 inhibitor
without any effect on its own activity and it is
overexpressed in squamous cell carcinomas and
neuroblastomas. CDK6 has also been shown to inhibit cell
differentiation in many cell types.
Length = 290
Score = 75.8 bits (186), Expect = 7e-15
Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 15/178 (8%)
Query: 420 EINLLRACQG--HPNIVNLHCV-----FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTE 472
E+ +LR + HPN+V L V E LV E + +L + + G
Sbjct: 51 EVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPT 109
Query: 473 NEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLK--RESLH 530
+M QL+ + F+HS VVHRDLKP+N+L + + IK+ DFG A + + +L
Sbjct: 110 ETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVT--SSGQIKLADFGLARIYSFQMALT 167
Query: 531 TPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVIL 588
+ TL Y APEVL Q S Y DLWS+G I + R+ K + + D+ LG IL
Sbjct: 168 SVVVTLWYRAPEVLLQ--SSYATPVDLWSVGCIFAEMFRR-KPLFRGSSDVDQLGKIL 222
Score = 42.3 bits (99), Expect = 8e-04
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 927 IMRQLVAAVHFMHSRGVVHRDLKPENLLLSGISGNLIKI 965
+M QL+ + F+HS VVHRDLKP+N+L++ S IK+
Sbjct: 115 MMFQLLRGLDFLHSHRVVHRDLKPQNILVT--SSGQIKL 151
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 75.0 bits (185), Expect = 9e-15
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 9/150 (6%)
Query: 419 EEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRI 478
+E +++ + H +V L+ V +E Y+V E + G LLD ++ + +
Sbjct: 50 QEAQIMKKLR-HDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDM 108
Query: 479 MRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPC----F 534
Q+ + ++ SR +HRDL N+L + K+ DFG A L + +T F
Sbjct: 109 AAQIAEGMAYLESRNYIHRDLAARNILVGE--NLVCKIADFGLARLIEDDEYTAREGAKF 166
Query: 535 TLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+++ APE + + D+WS G++L
Sbjct: 167 PIKWTAPEAANYGR--FTIKSDVWSFGILL 194
Score = 37.3 bits (87), Expect = 0.028
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V E + G LLD ++ + + Q+ + ++ SR +HRDL N+L+
Sbjct: 77 YIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILV 136
Query: 956 SGISGNLIKI 965
+ KI
Sbjct: 137 G--ENLVCKI 144
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 76.4 bits (188), Expect = 9e-15
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS-------EEINLLRACQGHPNIVNLHC 438
+G G++ + ++ TGQ A+K I + E+ LL+ + H NI++L
Sbjct: 18 VGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLR-HENIISLSD 76
Query: 439 VFQDEVH-TYLVLELLKGGELLDRIRQKGRC--GFTENEASRIMRQLVAAVHFMHSRGVV 495
+F + Y V ELL G L R+ F + +I+R L ++HS GVV
Sbjct: 77 IFISPLEDIYFVTELL--GTDLHRLLTSRPLEKQFIQYFLYQILRGL----KYVHSAGVV 130
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYDENC 555
HRDLKP N+L ++ ++K+ DFG A ++ + T Y APE++ + YD
Sbjct: 131 HRDLKPSNILINENC--DLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQK-YDVEV 187
Query: 556 DLWSLGVILVNVL 568
D+WS G I +L
Sbjct: 188 DIWSAGCIFAEML 200
Score = 45.2 bits (107), Expect = 9e-05
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 896 YLVLELLKGGELLDRIRQKGRC--GFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
Y V ELL G L R+ F + +I+R L ++HS GVVHRDLKP N+
Sbjct: 86 YFVTELL--GTDLHRLLTSRPLEKQFIQYFLYQILRGL----KYVHSAGVVHRDLKPSNI 139
Query: 954 LL 955
L+
Sbjct: 140 LI 141
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 75.5 bits (186), Expect = 1e-14
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 38/211 (18%)
Query: 381 DKAGILGDGSYSVCRRCVEKSTGQEYAVKII---SRK----IDCSEEINLLRACQGHPNI 433
+K +G G++ + K T Q A+K + + K I EI +L+ + H N+
Sbjct: 15 EKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLK-HENV 73
Query: 434 VNLHCVFQDEVHT--------YLVLEL----LKGGELLDRIRQKGRCGFTENEASRIMRQ 481
VNL + + + YLV E L G LL K FT +E ++M+
Sbjct: 74 VNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAG--LLSNKNVK----FTLSEIKKVMKM 127
Query: 482 LVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNI-KVVDFGFA--CLKRESLHTPCF---- 534
L+ ++++H ++HRD+K N+L + D I K+ DFG A ++ +
Sbjct: 128 LLNGLYYIHRNKILHRDMKAANILITK---DGILKLADFGLARAFSLSKNSKPNRYTNRV 184
Query: 535 -TLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
TL Y PE+L ++ Y D+W G I+
Sbjct: 185 VTLWYRPPELLLGERD-YGPPIDMWGAGCIM 214
Score = 49.7 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 889 SRYNVHTYLVLEL----LKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 944
+RY YLV E L G LL K FT +E ++M+ L+ ++++H ++
Sbjct: 88 NRYKGSFYLVFEFCEHDLAG--LLSNKNVK----FTLSEIKKVMKMLLNGLYYIHRNKIL 141
Query: 945 HRDLKPENLLLS 956
HRD+K N+L++
Sbjct: 142 HRDMKAANILIT 153
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 76.0 bits (187), Expect = 1e-14
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 41/220 (18%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYA---VKIISRKIDCSEEINLLRACQ-------------- 428
LG+G+Y + + TG+ A VKII D +++ L+ C
Sbjct: 17 LGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNE 76
Query: 429 -GHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVH 487
H NI+ L V+ + LV++++ +L + +K R TE++ I+ Q++ ++
Sbjct: 77 IKHENIMGLVDVYVEGDFINLVMDIMAS-DLKKVVDRKIR--LTESQVKCILLQILNGLN 133
Query: 488 FMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA-----------CLK------RESLH 530
+H +HRDL P N +F + G K+ DFG A K RE +
Sbjct: 134 VLHKWYFMHRDLSPAN-IFINSKGI-CKIADFGLARRYGYPPYSDTLSKDETMQRREEMT 191
Query: 531 TPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQ 570
+ TL Y APE+L Y D+WS+G I +L
Sbjct: 192 SKVVTLWYRAPELL-MGAEKYHFAVDMWSVGCIFAELLTG 230
Score = 37.8 bits (88), Expect = 0.022
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LV++++ +L + +K R TE++ I+ Q++ ++ +H +HRDL P N+ +
Sbjct: 97 LVMDIMAS-DLKKVVDRKIR--LTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFI 152
>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 2.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
LATS2 is an essential mitotic regulator responsible for
coordinating accurate cytokinesis completion and
governing the stabilization of other mitotic regulators.
It is also critical in the maintenance of proper
chromosome number, genomic stability, mitotic fidelity,
and the integrity of centrosome duplication.
Downregulation of LATS2 is associated with poor
prognosis in acute lymphoblastic leukemia and breast
cancer.
Length = 381
Score = 76.2 bits (187), Expect = 1e-14
Identities = 74/270 (27%), Positives = 119/270 (44%), Gaps = 53/270 (19%)
Query: 382 KAGILGDGSY-SVCRRCVEKSTGQEYAVKIISRK--------IDCSEEINLLRACQGHPN 432
K LG G++ VC C + T YA+K + +K E ++L A +
Sbjct: 5 KIKTLGIGAFGEVCLAC-KVDTHALYAMKTLRKKDVLNRNQVAHVKAERDIL-AEADNEW 62
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+V L+ FQD+ + Y V++ + GG+++ + + F E A + +L A+ +H
Sbjct: 63 VVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMEV--FPEVLARFYIAELTLAIESVHKM 120
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYD 552
G +HRD+KP+N+L D G +IK+ DFG C H + Y +RQD
Sbjct: 121 GFIHRDIKPDNILI-DLDG-HIKLTDFGL-CTGFRWTHNSKY---YQKGSHIRQDSM--- 171
Query: 553 ENCDLWS----------LGVILVNVLRQD---------------------KSGYDENCDL 581
E DLW L + +Q + GY + CD
Sbjct: 172 EPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDW 231
Query: 582 WSLGVILYTMLCGRVPFHARSRDDSALSIM 611
WS+GVIL+ ML G+ PF A + ++ L ++
Sbjct: 232 WSVGVILFEMLVGQPPFLAPTPTETQLKVI 261
Score = 56.9 bits (137), Expect = 2e-08
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 261 IQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDD 320
I + L P + LSP+ D I++L RLG A+++K HPFF+ +D+
Sbjct: 261 INWENTLHIPPQV--KLSPEAVDLITKLCCS-AEERLGRN--GADDIKAHPFFSEVDFSS 315
Query: 321 LATKRIPAPFVPKISNELDVSNF 343
+ PAP+VPKIS+ +D SNF
Sbjct: 316 -DIRTQPAPYVPKISHPMDTSNF 337
Score = 40.0 bits (93), Expect = 0.005
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y V++ + GG+++ + + F E A + +L A+ +H G +HRD+KP+N+L+
Sbjct: 77 YFVMDYIPGGDMMSLLIRMEV--FPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILI 134
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 75.1 bits (184), Expect = 2e-14
Identities = 58/204 (28%), Positives = 109/204 (53%), Gaps = 24/204 (11%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS-RKIDCSE----EINLLRACQGHPNIVNLHCVF 440
+G+GS + EK TG++ AVK + RK E E+ ++R H N+V+++ +
Sbjct: 30 IGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYH-HENVVDMYNSY 88
Query: 441 QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 500
++V+E L+GG L D + E + + + ++ A+ ++H++GV+HRD+K
Sbjct: 89 LVGDELWVVMEFLEGGALTDIVTHTR---MNEEQIATVCLSVLRALSYLHNQGVIHRDIK 145
Query: 501 PENLLFSDPAGDNIKVVDFGFACL------KRESL-HTPCFTLQYAAPEVLRQDKSGYDE 553
+++L + + IK+ DFGF KR+SL TP + APEV+ + Y
Sbjct: 146 SDSILLT--SDGRIKLSDFGFCAQVSKEVPKRKSLVGTP----YWMAPEVI--SRLPYGT 197
Query: 554 NCDLWSLGVILVNVLRQDKSGYDE 577
D+WSLG++++ ++ + ++E
Sbjct: 198 EVDIWSLGIMVIEMIDGEPPYFNE 221
Score = 41.6 bits (97), Expect = 0.001
Identities = 18/61 (29%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V+E L+GG L D + E + + + ++ A+ ++H++GV+HRD+K +++LL
Sbjct: 95 WVVMEFLEGGALTDIVTHTR---MNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILL 151
Query: 956 S 956
+
Sbjct: 152 T 152
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 74.8 bits (184), Expect = 2e-14
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 25/191 (13%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS--------RKIDCSEEINLLRACQGHPNIVNLH 437
+G GS+ + T + A+K +S + D +E+ L+ + HPN +
Sbjct: 23 IGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLR-HPNTIEYK 81
Query: 438 CVFQDEVHTYLVLELLKG--GELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
+ E +LV+E G ++L+ ++ E E + I + + ++HS +
Sbjct: 82 GCYLREHTAWLVMEYCLGSASDILEVHKK----PLQEVEIAAICHGALQGLAYLHSHERI 137
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKRES---LHTPCFTLQYAAPEV-LRQDKSGY 551
HRD+K N+L ++P +K+ DFG A L + + TP + APEV L D+ Y
Sbjct: 138 HRDIKAGNILLTEPG--TVKLADFGSASLVSPANSFVGTPYWM----APEVILAMDEGQY 191
Query: 552 DENCDLWSLGV 562
D D+WSLG+
Sbjct: 192 DGKVDVWSLGI 202
Score = 35.9 bits (83), Expect = 0.078
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 894 HT-YLVLELLKG--GELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKP 950
HT +LV+E G ++L+ ++ E E + I + + ++HS +HRD+K
Sbjct: 88 HTAWLVMEYCLGSASDILEVHKK----PLQEVEIAAICHGALQGLAYLHSHERIHRDIKA 143
Query: 951 ENLLLS 956
N+LL+
Sbjct: 144 GNILLT 149
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 75.0 bits (185), Expect = 3e-14
Identities = 83/310 (26%), Positives = 128/310 (41%), Gaps = 82/310 (26%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIIS---RKIDCSE---EINLLRACQGHPNIVNLH- 437
+G+G+Y + K TG + A+K IS + C EI +LR + H NI+ +
Sbjct: 12 YIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFK-HENIIGILD 70
Query: 438 -------CVFQDEVHTYLVLELLKGGELLDRIR-QKGRCGFTENEASRIMRQLVAAVHFM 489
F D Y+V EL++ +L I+ Q + + + Q++ + ++
Sbjct: 71 IIRPPSFESFND---VYIVQELMET-DLYKLIKTQH----LSNDHIQYFLYQILRGLKYI 122
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLK-RESLHTPCF-----TLQYAAPEV 543
HS V+HRDLKP NLL + ++K+ DFG A + E HT T Y APE+
Sbjct: 123 HSANVLHRDLKPSNLLLN--TNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEI 180
Query: 544 LRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHAR-- 601
+ K GY + D+WS+G IL ML R F +
Sbjct: 181 MLNSK-------------------------GYTKAIDIWSVGCILAEMLSNRPLFPGKDY 215
Query: 602 --------------SRDD--SALSIMAR--IKEGQFNFDAEAWST----VSSEAKELTKS 639
S++D +S+ AR IK F W+ +A +L
Sbjct: 216 LHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFK-PKVPWNKLFPNADPKALDLLDK 274
Query: 640 LLTVNPAQRI 649
+LT NP +RI
Sbjct: 275 MLTFNPHKRI 284
Score = 42.3 bits (100), Expect = 8e-04
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLL 955
Q++ + ++HS V+HRDLKP NLLL
Sbjct: 114 QILRGLKYIHSANVLHRDLKPSNLLL 139
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 75.0 bits (184), Expect = 3e-14
Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 48/268 (17%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS-------EEINLLRACQGHPNIVNLHC 438
+G G+Y +++ TG + A+K + R E+ LL+ + H N++ L
Sbjct: 23 VGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMK-HENVIGLLD 81
Query: 439 VFQ-----DEVHT-YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
VF D H YLV+ + G L ++ + + E+ ++ Q++ + ++H+
Sbjct: 82 VFTPDLSLDRFHDFYLVMPFM--GTDLGKLMKHEKLS--EDRIQFLVYQMLKGLKYIHAA 137
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYD 552
G++HRDLKP NL ++ +K++DFG A + T Y APEV
Sbjct: 138 GIIHRDLKPGNLAVNEDC--ELKILDFGLARQTDSEMTGYVVTRWYRAPEV--------- 186
Query: 553 ENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMA 612
++N + Y + D+WS+G I+ ML G+ F D + IM
Sbjct: 187 -----------ILNWMH-----YTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMK 230
Query: 613 RIKEGQFNFDAEAWSTVSSEAKELTKSL 640
F + S +AK K L
Sbjct: 231 VTGTPSKEFVQKLQSE---DAKNYVKKL 255
Score = 37.2 bits (86), Expect = 0.036
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
YLV+ + G L ++ + + E+ ++ Q++ + ++H+ G++HRDLKP NL
Sbjct: 96 YLVMPFM--GTDLGKLMKHEKLS--EDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNL 149
>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK2
is specifically translocated to the mitochondria during
dopaminergic cell death. Specific substrates include the
microtubule-associated proteins DCX and Tau, as well as
TIF-IA which is involved in ribosomal RNA synthesis
regulation. Mice deficient in Jnk2 show protection
against arthritis, type 1 diabetes, atherosclerosis,
abdominal aortic aneurysm, cardiac cell death,
TNF-induced liver damage, and tumor growth, indicating
that JNK2 may play roles in the pathogenesis of these
diseases.
Length = 359
Score = 74.7 bits (183), Expect = 4e-14
Identities = 75/313 (23%), Positives = 124/313 (39%), Gaps = 83/313 (26%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKID-------CSEEINLLRACQGHPNIVNLHC 438
+G G+ + + G AVK +SR E+ LL+ C H NI++L
Sbjct: 29 IGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLK-CVNHKNIISLLN 87
Query: 439 VF------QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
VF ++ YLV+EL+ + Q S ++ Q++ + +HS
Sbjct: 88 VFTPQKSLEEFQDVYLVMELMDAN-----LCQVIHMELDHERMSYLLYQMLCGIKHLHSA 142
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFA-CLKRESLHTP-CFTLQYAAPEVLRQDKSG 550
G++HRDLKP N++ +K++DFG A + TP T Y APEV+
Sbjct: 143 GIIHRDLKPSNIVVKSDC--TLKILDFGLARTACTNFMMTPYVVTRYYRAPEVI------ 194
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDS---- 606
LG+ GY EN D+WS+G I+ ++ G V F D
Sbjct: 195 ---------LGM-----------GYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKV 234
Query: 607 -------ALSIMARIKEGQFNF-----------------------DAEAWSTVSSEAKEL 636
+ M R++ N+ ++E +S+A++L
Sbjct: 235 IEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDL 294
Query: 637 TKSLLTVNPAQRI 649
+L ++P +RI
Sbjct: 295 LSKMLVIDPDKRI 307
Score = 38.1 bits (88), Expect = 0.021
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV+EL+ + Q S ++ Q++ + +HS G++HRDLKP N+++
Sbjct: 102 YLVMELMDAN-----LCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV 156
Score = 32.7 bits (74), Expect = 0.96
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 283 DFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIPAP 329
D +S++LV DP +R + +E RHP+ V W D A P P
Sbjct: 293 DLLSKMLVIDPDKR-----ISVDEALRHPYITV--WYDPAEAEAPPP 332
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 73.6 bits (180), Expect = 4e-14
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 14/200 (7%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEE--IN--LLRACQGHPNIVNLHCVFQ 441
+G G+ ++ +TGQE A+K I+ + +E IN L+ +PNIVN F
Sbjct: 27 IGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFL 86
Query: 442 DEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKP 501
++V+E L GG L D + + C E + + + R+ + A+ F+H+ V+HRD+K
Sbjct: 87 VGDELFVVMEYLAGGSLTDVVTET--C-MDEAQIAAVCRECLQALEFLHANQVIHRDIKS 143
Query: 502 ENLLFSDPAGDNIKVVDFGFACL---KRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLW 558
+N+L ++K+ DFGF ++ T T + APEV+ + Y D+W
Sbjct: 144 DNVLLGMDG--SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV--TRKAYGPKVDIW 199
Query: 559 SLGVILVNVLRQDKSGYDEN 578
SLG++ + ++ + +EN
Sbjct: 200 SLGIMAIEMVEGEPPYLNEN 219
Score = 44.7 bits (105), Expect = 1e-04
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V+E L GG L D + + C E + + + R+ + A+ F+H+ V+HRD+K +N+LL
Sbjct: 92 FVVMEYLAGGSLTDVVTET--C-MDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLL 148
Query: 956 SGISGNL 962
G+ G++
Sbjct: 149 -GMDGSV 154
Score = 31.2 bits (70), Expect = 2.2
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 274 PEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNV 315
PE LSP DF++R L D +R A+EL +HPF +
Sbjct: 238 PEKLSPIFRDFLNRCLEMDVEKR-----GSAKELLQHPFLKL 274
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK7 is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 73.2 bits (180), Expect = 6e-14
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 374 EQYDMDLDK---AGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEE-----INLLR 425
++Y DL+ G +G G+ + K TG AVK + R+ EE ++L
Sbjct: 8 QKYPADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQM-RRTGNKEENKRILMDLDV 66
Query: 426 ACQGH--PNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLV 483
+ H P IV + F + ++ +EL+ LD++ ++ + E+ ++ +V
Sbjct: 67 VLKSHDCPYIVKCYGYFITDSDVFICMELM--STCLDKLLKRIQGPIPEDILGKMTVAIV 124
Query: 484 AAVHFMHSR-GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL-HTP---CFTLQY 538
A+H++ + GV+HRD+KP N+L D +G N+K+ DFG + +S T C Y
Sbjct: 125 KALHYLKEKHGVIHRDVKPSNILL-DASG-NVKLCDFGISGRLVDSKAKTRSAGCAA--Y 180
Query: 539 AAPEVLRQD--KSGYDENCDLWSLGVILV 565
APE + YD D+WSLG+ LV
Sbjct: 181 MAPERIDPPDPNPKYDIRADVWSLGISLV 209
Score = 39.3 bits (92), Expect = 0.007
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
Query: 907 LLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR-GVVHRDLKPENLLLS--------- 956
LL RI+ E+ ++ +V A+H++ + GV+HRD+KP N+LL
Sbjct: 103 LLKRIQG----PIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCD 158
Query: 957 -GISGNLI 963
GISG L+
Sbjct: 159 FGISGRLV 166
Score = 34.3 bits (79), Expect = 0.28
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 265 RILKTEPPIP---EDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
+IL+ EPP E SPD F+ L KD R+R EL +HPF
Sbjct: 230 KILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKR-----PKYRELLQHPF 275
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 72.6 bits (178), Expect = 6e-14
Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 44/208 (21%)
Query: 382 KAGILGDGSYSVCRRCVEKSTGQEYAVKIIS-------------RKIDCSEEINLLRACQ 428
K +LG G+Y C + GQ AVK + K+ EE++LL++ +
Sbjct: 4 KGEVLGKGAYGTVY-CGLTNQGQLIAVKQVELDTSNVLAAEKEYEKL--QEEVDLLKSLK 60
Query: 429 GHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHF 488
H NIV D+ + +E + GG + + + G E + +Q++ V +
Sbjct: 61 -HVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRFG--PLPEPVFCKYTKQILDGVAY 117
Query: 489 MHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKR--------------ESLH-TPC 533
+H+ VVHRD+K N++ P G IK++DFG C +R +S+H TP
Sbjct: 118 LHNNCVVHRDIKGNNVMLM-PNG-IIKLIDFG--CARRLAWVGLHGTHSNMLKSMHGTP- 172
Query: 534 FTLQYAAPEVLRQDKSGYDENCDLWSLG 561
+ APEV+ + SGY D+WS+G
Sbjct: 173 ---YWMAPEVINE--SGYGRKSDIWSIG 195
Score = 36.0 bits (83), Expect = 0.066
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+ +E + GG + + + G E + +Q++ V ++H+ VVHRD+K N++L
Sbjct: 79 IFMEFVPGGSISSILNRFG--PLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVML 135
Score = 31.8 bits (72), Expect = 1.7
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 271 PPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
P +P+ S DF++ L +D R A +L RH F
Sbjct: 228 PRLPDSFSAAAIDFVTSCLTRDQHER-----PSALQLLRHDF 264
>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
Serine/Threonine Kinase, p38delta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38delta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38delta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38delta, also called MAPK13, is found in
skeletal muscle, heart, lung, testis, pancreas, and
small intestine. It regulates microtubule function by
phosphorylating Tau. It activates the c-jun promoter and
plays a role in G2 cell cycle arrest. It also controls
the degration of c-Myb, which is associated with myeloid
leukemia and poor prognosis in colorectal cancer.
p38delta is the main isoform involved in regulating the
differentiation and apoptosis of keratinocytes.
Length = 342
Score = 73.8 bits (181), Expect = 6e-14
Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 26/198 (13%)
Query: 386 LGDGSY-SVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVNL 436
+G G+Y SVC ++K TG++ A+K +SR SE E+ LL+ Q H N++ L
Sbjct: 23 VGSGAYGSVCS-AIDKRTGEKVAIKKLSRPFQ-SEIFAKRAYRELTLLKHMQ-HENVIGL 79
Query: 437 HCVFQ-----DEVHT-YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
VF DE YLV+ ++ L +I +E++ ++ Q++ + ++H
Sbjct: 80 LDVFTSAVSGDEFQDFYLVMPYMQTD--LQKIMGHP---LSEDKVQYLVYQMLCGLKYIH 134
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSG 550
S G++HRDLKP NL ++ +K++DFG A + T Y APEV+ +
Sbjct: 135 SAGIIHRDLKPGNLAVNEDC--ELKILDFGLARHADAEMTGYVVTRWYRAPEVI-LNWMH 191
Query: 551 YDENCDLWSLGVILVNVL 568
Y++ D+WS+G I+ +L
Sbjct: 192 YNQTVDIWSVGCIMAEML 209
Score = 39.1 bits (91), Expect = 0.009
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 919 FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
+E++ ++ Q++ + ++HS G++HRDLKP NL
Sbjct: 114 LSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNL 148
>gnl|CDD|214529 smart00133, S_TK_X, Extension to Ser/Thr-type protein kinases.
Length = 64
Score = 67.0 bits (164), Expect = 7e-14
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 316 IDWDDLATKRIPAPFVPKISNELDVSNFSDEFTKMIPADSPA---IVPPNFDKIFKG 369
IDWD L K I PFVPKI + D SNF EFT+ P +P + + F+G
Sbjct: 3 IDWDKLENKEIEPPFVPKIKSPTDTSNFDPEFTEETPVLTPVDSPLSGGIQQEPFRG 59
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 72.1 bits (177), Expect = 7e-14
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
HPNIV L V + Y+V+EL+ GG LL +R+K T + ++ A + ++
Sbjct: 51 HPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKN-RLTVKKLLQMSLDAAAGMEYL 109
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQ---------YAA 540
S+ +HRDL N L + + +K+ DFG + RE +T+ + A
Sbjct: 110 ESKNCIHRDLAARNCLVGE--NNVLKISDFG---MSREE-EGGIYTVSDGLKQIPIKWTA 163
Query: 541 PEVLRQDKSGYDENCDLWSLGVIL 564
PE L + Y D+WS G++L
Sbjct: 164 PEALNYGR--YTSESDVWSYGILL 185
Score = 40.5 bits (95), Expect = 0.002
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V+EL+ GG LL +R+K T + ++ A + ++ S+ +HRDL N L+
Sbjct: 68 YIVMELVPGGSLLTFLRKKKN-RLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLV 126
Query: 956 SGISGNLIKI 965
N++KI
Sbjct: 127 G--ENNVLKI 134
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 72.0 bits (177), Expect = 1e-13
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 23/195 (11%)
Query: 386 LGDGSYSVCRRCVEKSTGQEY---AVKIISRK--IDCSE----EINLLRACQGHPNIVNL 436
LGDGS+ V RR ++G + AVK + D + E ++ + H N++ L
Sbjct: 3 LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLD-HENLIRL 61
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
+ V +V EL G LLDR+R+ F + Q+ + ++ S+ +H
Sbjct: 62 YGVVLTH-PLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIH 120
Query: 497 RDLKPEN-LLFSDPAGDNIKVVDFGF--ACLKRESLHTPCFTLQ----YAAPEVLRQDKS 549
RDL N LL SD D +K+ DFG A + E + L+ + APE LR
Sbjct: 121 RDLAARNILLASD---DKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRT- 176
Query: 550 GYDENCDLWSLGVIL 564
+ D+W GV L
Sbjct: 177 -FSHASDVWMFGVTL 190
Score = 48.5 bits (116), Expect = 6e-06
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
+V EL G LLDR+R+ F + Q+ + ++ S+ +HRDL N+LL+
Sbjct: 72 MVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLA 131
Query: 957 GISGNLIKI 965
S + +KI
Sbjct: 132 --SDDKVKI 138
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK1
specifically binds with JAMP (JNK1-associated membrane
protein), which regulates the duration of JNK1 activity
in response to stimuli. Specific JNK1 substrates include
Itch and SG10, which are implicated in Th2 responses and
airway inflammation, and microtubule dynamics and
axodendritic length, respectively. Mice deficient in
Jnk1 are protected against arthritis, obesity, type 2
diabetes, cardiac cell death, and non-alcoholic liver
disease, suggesting that JNK1 may play roles in the
pathogenesis of these diseases.
Length = 364
Score = 73.2 bits (179), Expect = 1e-13
Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 41/191 (21%)
Query: 423 LLRACQGHPNIVNLHCVF------QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEAS 476
+L C H NI+ L VF ++ Y+V+EL+ L I+ + S
Sbjct: 75 VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQVIQME----LDHERMS 129
Query: 477 RIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRES-LHTP-CF 534
++ Q++ + +HS G++HRDLKP N++ +K++DFG A S + TP
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC--TLKILDFGLARTAGTSFMMTPYVV 187
Query: 535 TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCG 594
T Y APEV+ LG+ GY EN D+WS+G I+ M+ G
Sbjct: 188 TRYYRAPEVI---------------LGM-----------GYKENVDIWSVGCIMGEMIKG 221
Query: 595 RVPFHARSRDD 605
V F D
Sbjct: 222 GVLFPGTDHID 232
Score = 37.3 bits (86), Expect = 0.037
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V+EL+ L I+ + S ++ Q++ + +HS G++HRDLKP N+++
Sbjct: 105 YIVMELMDA-NLCQVIQME----LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV 159
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 71.4 bits (175), Expect = 1e-13
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQ-----GHPNIVNLHCVF 440
LG G Y V K AVK + K D E L+ HPN+V L V
Sbjct: 14 LGGGQYGEVYEGVWKKYSLTVAVKTL--KEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 71
Query: 441 QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 500
E Y++ E + G LLD +R+ R + Q+ +A+ ++ + +HRDL
Sbjct: 72 TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 131
Query: 501 PENLLFSDPAGDN--IKVVDFGFACLKRESLHTPC----FTLQYAAPEVLRQDKSGYDEN 554
N L G+N +KV DFG + L +T F +++ APE L +K +
Sbjct: 132 ARNCL----VGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK--FSIK 185
Query: 555 CDLWSLGVIL 564
D+W+ GV+L
Sbjct: 186 SDVWAFGVLL 195
Score = 38.3 bits (89), Expect = 0.013
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y++ E + G LLD +R+ R + Q+ +A+ ++ + +HRDL N L+
Sbjct: 78 YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLV 137
Query: 956 SGISGNLIKI 965
+L+K+
Sbjct: 138 G--ENHLVKV 145
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the
cytoplasm. Its kinase activity is cell cycle dependent
and peaks at the S and G2 phases. PCTAIRE-1 is highly
expressed in the brain and may play a role in regulating
neurite outgrowth. It can also associate with Trap
(Tudor repeat associator with PCTAIRE-2), a
physiological partner of PCTAIRE-2; with p11, a small
dimeric protein with similarity to S100; and with 14-3-3
proteins, mediators of phosphorylation-dependent
interactions in many different proteins.
Length = 301
Score = 72.0 bits (176), Expect = 2e-13
Identities = 75/255 (29%), Positives = 113/255 (44%), Gaps = 52/255 (20%)
Query: 373 FEQYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKID----CS--EEINLLRA 426
E Y + LDK LG+G+Y+ + K T A+K I + + C+ E++LL+
Sbjct: 5 LETY-IKLDK---LGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKD 60
Query: 427 CQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTEN--EASRIMRQLVA 484
+ H NIV LH + E LV E L D + CG + N + QL+
Sbjct: 61 LK-HANIVTLHDIIHTEKSLTLVFEYLDK----DLKQYLDDCGNSINMHNVKLFLFQLLR 115
Query: 485 AVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF-----TLQYA 539
+++ H R V+HRDLKP+NLL ++ +K+ DFG A + +S+ T + TL Y
Sbjct: 116 GLNYCHRRKVLHRDLKPQNLLINERG--ELKLADFGLA--RAKSIPTKTYSNEVVTLWYR 171
Query: 540 APEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFH 599
P++L LG + Y D+W +G I Y M GR P
Sbjct: 172 PPDIL---------------LG----------STDYSTQIDMWGVGCIFYEMSTGR-PLF 205
Query: 600 ARSRDDSALSIMARI 614
S + L + RI
Sbjct: 206 PGSTVEEQLHFIFRI 220
Score = 36.9 bits (85), Expect = 0.035
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLLS 956
QL+ +++ H R V+HRDLKP+NLL++
Sbjct: 112 QLLRGLNYCHRRKVLHRDLKPQNLLIN 138
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 70.3 bits (172), Expect = 2e-13
Identities = 66/253 (26%), Positives = 100/253 (39%), Gaps = 43/253 (16%)
Query: 399 EKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGEL 458
+ T Q + +K + + + S E L PN+V LH E +LVL+ +GG+L
Sbjct: 14 DTRTQQTFILKGLRKSSEYSRE-RLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKL 72
Query: 459 LDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVD 518
I + E R ++V A+ +H G+V RDL P N+L D +I++
Sbjct: 73 WSHISKFLN--IPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRG--HIQLTY 128
Query: 519 FGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDEN 578
F +S Y APEV G I S E
Sbjct: 129 FSRWSEVEDSCDGEAVENMYCAPEV-----------------GGI---------SEETEA 162
Query: 579 CDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSSEAKELTK 638
CD WSLG IL+ +L G+ S ++ + ++ VS EA+ L +
Sbjct: 163 CDWWSLGAILFELLTGKTLVECHP---SGINTHTTLNIPEW---------VSEEARSLLQ 210
Query: 639 SLLTVNPAQRIRM 651
LL NP +R+
Sbjct: 211 QLLQFNPTERLGA 223
Score = 44.8 bits (106), Expect = 7e-05
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 269 TEPPIPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
T IPE +S + + +LL +P RLG G E++K HPFF
Sbjct: 193 TTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF 237
Score = 37.9 bits (88), Expect = 0.015
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+LVL+ +GG+L I + E R ++V A+ +H G+V RDL P N+LL
Sbjct: 61 FLVLQHAEGGKLWSHISKFLN--IPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILL 118
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 73.0 bits (179), Expect = 3e-13
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 41/189 (21%)
Query: 397 CVEKSTGQEYAVKIISRK---IDCSEEINLLRACQGHPNIV---NLHCV----------F 440
CV +S+ +Y +++ + E LLR HP ++ ++ V +
Sbjct: 184 CVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLS-HPAVLALLDVRVVGGLTCLVLPKY 242
Query: 441 QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLK 500
+ +++TYL R+R G T + RQL++A+ ++H G++HRD+K
Sbjct: 243 RSDLYTYLG----------ARLRPLGLAQVTA-----VARQLLSAIDYIHGEGIIHRDIK 287
Query: 501 PENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF-----TLQYAAPEVLRQDKSGYDENC 555
EN+L + P ++I + DFG AC R S TP T+ APEVL D Y +
Sbjct: 288 TENVLVNGP--EDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDP--YTPSV 343
Query: 556 DLWSLGVIL 564
D+WS G+++
Sbjct: 344 DIWSAGLVI 352
Score = 42.2 bits (99), Expect = 0.001
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 927 IMRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
+ RQL++A+ ++H G++HRD+K EN+L++G
Sbjct: 265 VARQLLSAIDYIHGEGIIHRDIKTENVLVNG 295
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 70.0 bits (171), Expect = 4e-13
Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 47/275 (17%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKII------SRKIDCSEEINLLRACQGHPNIVNLHC 438
++G GSY ++ G++Y +K + R+ +E+ L + HPNIV
Sbjct: 7 VVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRE 66
Query: 439 VFQDE-VHTYLVLELLKGGELLDRIR-QKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
++ E Y+V+ +GG+L +++ QKG+ EN+ Q+ A+ ++H + ++H
Sbjct: 67 SWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKL-LPENQVVEWFVQIAMALQYLHEKHILH 125
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACL---KRESLHTPCFTLQYAAPEVLRQDKSGYDE 553
RDLK +N+ + + IKV D G A + + + T T Y +PE+
Sbjct: 126 RDLKTQNVFLTRT--NIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKP----- 178
Query: 554 NCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR 613
Y+ D+W+LG +Y M + F+A+ + S++ R
Sbjct: 179 ---------------------YNYKSDVWALGCCVYEMATLKHAFNAKDMN----SLVYR 213
Query: 614 IKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
I EG+ S E EL ++L+ P +R
Sbjct: 214 IIEGKL---PPMPKDYSPELGELIATMLSKRPEKR 245
Score = 45.7 bits (108), Expect = 5e-05
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 896 YLVLELLKGGELLDRIR-QKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
Y+V+ +GG+L +++ QKG+ EN+ Q+ A+ ++H + ++HRDLK +N+
Sbjct: 76 YIVMGFCEGGDLYHKLKEQKGKL-LPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVF 134
Query: 955 LSGISGNLIKI 965
L+ N+IK+
Sbjct: 135 LT--RTNIIKV 143
Score = 35.7 bits (82), Expect = 0.084
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 257 DYYHIQYRRILKTEPPIPEDLSPDVADFISRLLVKDPRRR 296
D + YR I PP+P+D SP++ + I+ +L K P +R
Sbjct: 206 DMNSLVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEKR 245
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in
most tissues and is the major isoform involved in the
immune and inflammatory response. It is the central p38
MAPK involved in myogenesis. It plays a role in
regulating cell cycle check-point transition and
promoting cell differentiation. p38alpha also regulates
cell proliferation and death through crosstalk with the
JNK pathway. Its substrates include MAPK activated
protein kinase 2 (MK2), MK5, and the transcription
factors ATF2 and Mitf.
Length = 345
Score = 71.2 bits (174), Expect = 4e-13
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 25/198 (12%)
Query: 386 LGDGSY-SVCRRCVEKSTGQEYAVKIISRKID-------CSEEINLLRACQGHPNIVNLH 437
+G G+Y SVC + TG AVK +SR E+ LL+ + H N++ L
Sbjct: 25 VGSGAYGSVCA-AFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMK-HENVIGLL 82
Query: 438 CVF------QDEVHTYLVLELLKGGELLDRIR-QKGRCGFTENEASRIMRQLVAAVHFMH 490
VF ++ YLV L+ G +L + ++ QK T++ ++ Q++ + ++H
Sbjct: 83 DVFTPARSLEEFNDVYLVTHLM-GADLNNIVKCQK----LTDDHVQFLIYQILRGLKYIH 137
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSG 550
S ++HRDLKP NL ++ +K++DFG A + + T Y APE++ +
Sbjct: 138 SADIIHRDLKPSNLAVNEDC--ELKILDFGLARHTDDEMTGYVATRWYRAPEIM-LNWMH 194
Query: 551 YDENCDLWSLGVILVNVL 568
Y++ D+WS+G I+ +L
Sbjct: 195 YNQTVDIWSVGCIMAELL 212
Score = 38.1 bits (88), Expect = 0.018
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 896 YLVLELLKGGELLDRIR-QKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
YLV L+ G +L + ++ QK T++ ++ Q++ + ++HS ++HRDLKP NL
Sbjct: 98 YLVTHLM-GADLNNIVKCQK----LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNL 151
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 73.0 bits (179), Expect = 5e-13
Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 43/196 (21%)
Query: 402 TGQEYAVKIISRKIDCSEEINL-------LRACQG--HPNIVNLHCVFQDEVHT-----Y 447
TG E A+K++ + D EE + C HPNIV L D +
Sbjct: 2 TGHEVAIKLL--RTDAPEEEHQRARFRRETALCARLYHPNIVAL----LDSGEAPPGLLF 55
Query: 448 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFS 507
V E + G L + + G E R+M Q++ A+ H++G+VHRDLKP+N++ S
Sbjct: 56 AVFEYVPGRTLREVLAADG--ALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVS 113
Query: 508 DPAGD-NIKVVDFGFACL--------------KRESLHTPCFTLQYAAPEVLRQDKSGYD 552
+ KV+DFG L E L TP Y APE LR +
Sbjct: 114 QTGVRPHAKVLDFGIGTLLPGVRDADVATLTRTTEVLGTP----TYCAPEQLRGEPV--T 167
Query: 553 ENCDLWSLGVILVNVL 568
N DL++ G+I + L
Sbjct: 168 PNSDLYAWGLIFLECL 183
Score = 47.9 bits (114), Expect = 3e-05
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+ V E + G L + + G E R+M Q++ A+ H++G+VHRDLKP+N+++
Sbjct: 55 FAVFEYVPGRTLREVLAADG--ALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMV 112
Query: 956 S 956
S
Sbjct: 113 S 113
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of
stress chemicals such as jasmonic acid, hydrogen
peroxide and abscisic acid. OsMAPK4 is also called
OsMSRMK3 for Multiple Stress-Responsive MAPK3.
Length = 337
Score = 70.9 bits (174), Expect = 6e-13
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 34/205 (16%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISR----KIDCSE---EINLLRACQGHPNIVNLHC 438
+G G+Y + T ++ A+K I+ +ID EI LLR H N++ +
Sbjct: 13 IGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLD-HENVIAIKD 71
Query: 439 V--------FQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
+ F D Y+V EL+ +L IR +++ + QL+ + ++H
Sbjct: 72 IMPPPHREAFND---VYIVYELMDT-DLHQIIRSSQ--TLSDDHCQYFLYQLLRGLKYIH 125
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF------TLQYAAPEVL 544
S V+HRDLKP NLL + A ++K+ DFG A R + F T Y APE+L
Sbjct: 126 SANVLHRDLKPSNLLLN--ANCDLKICDFGLA---RTTSEKGDFMTEYVVTRWYRAPELL 180
Query: 545 RQDKSGYDENCDLWSLGVILVNVLR 569
+ S Y D+WS+G I +L
Sbjct: 181 -LNCSEYTTAIDVWSVGCIFAELLG 204
Score = 39.3 bits (92), Expect = 0.008
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLL 955
QL+ + ++HS V+HRDLKP NLLL
Sbjct: 116 QLLRGLKYIHSANVLHRDLKPSNLLL 141
Score = 30.8 bits (70), Expect = 3.6
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 264 RRILKTEPPIPE--------DLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFN 314
RR +++ P P +P D + ++LV DP +R + EE HP+
Sbjct: 242 RRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKR-----ITVEEALAHPYLA 295
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 69.4 bits (170), Expect = 7e-13
Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
HP ++ L+ V E Y+V EL+K G LL+ ++ + + Q+ + + ++
Sbjct: 60 HPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYL 119
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPC----FTLQYAAPEVLR 545
++ +HRDL N+L + + KV DFG A + +E ++ F +++ APE
Sbjct: 120 EAQNYIHRDLAARNVLVGE--NNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAAL 177
Query: 546 QDKSGYDENCDLWSLGVILVNVL 568
++ + D+WS G++L ++
Sbjct: 178 YNR--FSIKSDVWSFGILLTEIV 198
Score = 37.4 bits (87), Expect = 0.026
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V EL+K G LL+ ++ + + Q+ + + ++ ++ +HRDL N+L+
Sbjct: 77 YIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLV 136
Query: 956 SGISGNLIKI 965
N+ K+
Sbjct: 137 G--ENNICKV 144
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the
response of budding yeast to stress including exposure
to arsenite and hyperosmotic environments. Wis1
phosphorylates and activates the MAPK Sty1 (also called
Spc1 or Phh1), which stimulates a transcriptional
response to a wide range of cellular insults through the
bZip transcription factors Atf1, Pcr1, and Pap1.
Length = 286
Score = 69.9 bits (171), Expect = 7e-13
Identities = 68/280 (24%), Positives = 117/280 (41%), Gaps = 38/280 (13%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE------EINLLRACQGHPN 432
+++ LG G+Y + + + TG A+K I ++D S+ E+++L P
Sbjct: 2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVS-PY 60
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRC--GFTENEASRIMRQLVAAVHFMH 490
IV+ + F E Y+ +E + G L D++ G G E+ RI +V + F+
Sbjct: 61 IVDFYGAFFIEGAVYMCMEYMDAGSL-DKLYAGGVATEGIPEDVLRRITYAVVKGLKFLK 119
Query: 491 SR-GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQ-YAAPEVLRQDK 548
++HRD+KP N+L + +K+ DFG + SL Q Y APE ++
Sbjct: 120 EEHNIIHRDVKPTNVLVN--GNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIK--- 174
Query: 549 SGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSAL 608
S G Y D+WSLG+ + M GR P+ + +
Sbjct: 175 ----------SGGP-------NQNPTYTVQSDVWSLGLSILEMALGRYPYPPETY-ANIF 216
Query: 609 SIMARIKEGQFNFDAEAWSTVSSEAKELTKSLLTVNPAQR 648
+ ++ I +G S S +A++ L P +R
Sbjct: 217 AQLSAIVDGD---PPTLPSGYSDDAQDFVAKCLNKIPNRR 253
Score = 37.1 bits (86), Expect = 0.029
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 262 QYRRILKTEPP-IPEDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
Q I+ +PP +P S D DF+++ L K P RR +L HP+
Sbjct: 218 QLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRR-----PTYAQLLEHPW 264
Score = 37.1 bits (86), Expect = 0.036
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 896 YLVLELLKGGELLDRIRQKGRC--GFTENEASRIMRQLVAAVHFMHSR-GVVHRDLKPEN 952
Y+ +E + G L D++ G G E+ RI +V + F+ ++HRD+KP N
Sbjct: 75 YMCMEYMDAGSL-DKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTN 133
Query: 953 LLLS----------GISGNLIK 964
+L++ G+SGNL+
Sbjct: 134 VLVNGNGQVKLCDFGVSGNLVA 155
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38beta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates
such as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 70.5 bits (172), Expect = 8e-13
Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 25/199 (12%)
Query: 386 LGDGSY-SVCRRCVEKSTGQEYAVKIISRKID-------CSEEINLLRACQGHPNIVNLH 437
+G G+Y SVC + Q+ AVK +SR E+ LL+ + H N++ L
Sbjct: 23 VGSGAYGSVCS-AYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMK-HENVIGLL 80
Query: 438 CVF------QDEVHTYLVLELLKGGELLDRIR-QKGRCGFTENEASRIMRQLVAAVHFMH 490
VF ++ YLV L+ G +L + ++ QK ++ ++ QL+ + ++H
Sbjct: 81 DVFTPATSIENFNEVYLVTNLM-GADLNNIVKCQK----LSDEHVQFLIYQLLRGLKYIH 135
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLRQDKSG 550
S G++HRDLKP N+ ++ ++++DFG A + + T Y APE++ +
Sbjct: 136 SAGIIHRDLKPSNVAVNEDC--ELRILDFGLARQADDEMTGYVATRWYRAPEIM-LNWMH 192
Query: 551 YDENCDLWSLGVILVNVLR 569
Y++ D+WS+G I+ +L+
Sbjct: 193 YNQTVDIWSVGCIMAELLK 211
Score = 37.7 bits (87), Expect = 0.026
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 896 YLVLELLKGGELLDRIR-QKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENL 953
YLV L+ G +L + ++ QK ++ ++ QL+ + ++HS G++HRDLKP N+
Sbjct: 96 YLVTNLM-GADLNNIVKCQK----LSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNV 149
>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase
adapter protein. Protein Kinase family, STE20-related
kinase adapter protein (STRAD) subfamily, pseudokinase
domain. The STRAD subfamily is part of a larger
superfamily that includes the catalytic domains of
serine/threonine kinases (STKs), protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
pseudokinase domain shows similarity to protein kinases
but lacks crucial residues for catalytic activity. STRAD
forms a complex with the scaffolding protein MO25, and
the STK, LKB1, resulting in the activation of the
kinase. In the complex, LKB1 phosphorylates and
activates adenosine monophosphate-activated protein
kinases (AMPKs), which regulate cell energy metabolism
and cell polarity. LKB1 is a tumor suppressor linked to
the rare inherited disease, Peutz-Jeghers syndrome,
which is characterized by a predisposition to benign
polyps and hyperpigmentation of the buccal mucosa. There
are two forms of STRAD, alpha and beta, that complex
with LKB1 and MO25. The structure of STRAD-alpha is
available and shows that this protein binds ATP, has an
ordered activation loop, and adopts a closed
conformation typical of fully active protein kinases. It
does not possess activity due to nonconservative
substitutions of essential catalytic residues. ATP
binding enhances the affinity of STRAD for MO25. The
conformation of STRAD-alpha stabilized through ATP and
MO25 may be needed to activate LKB1.
Length = 314
Score = 68.9 bits (169), Expect = 2e-12
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 24/182 (13%)
Query: 400 KSTGQEYAVKIISRKIDCSE-------EINLLRACQGHPNIVNLHCVFQDEVHTYLVLEL 452
K T AVK I+ E EI R Q HPNI+ F + Y+V L
Sbjct: 22 KPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQ-HPNILPYVTSFIVDSELYVVSPL 80
Query: 453 LKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGD 512
+ G D ++ G E + I++ ++ A+ ++HS+G +HR +K ++L S GD
Sbjct: 81 MAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLS---GD 137
Query: 513 NIKVVDFGF--AC--LKRESLHTP--CFT------LQYAAPEVLRQDKSGYDENCDLWSL 560
KVV G + +K F L + +PEVL+Q+ GY+E D++S+
Sbjct: 138 G-KVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSV 196
Query: 561 GV 562
G+
Sbjct: 197 GI 198
Score = 36.2 bits (84), Expect = 0.077
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V L+ G D ++ G E + I++ ++ A+ ++HS+G +HR +K ++LL
Sbjct: 75 YVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILL 134
Query: 956 SG 957
SG
Sbjct: 135 SG 136
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 4.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 4, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK4 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK4 regulates cell morphology and
cytoskeletal organization. It is essential for embryonic
viability and proper neural development. Mice lacking
PAK4 die due to defects in the fetal heart. In addition,
their spinal cord motor neurons showed failure to
differentiate and migrate. PAK4 also plays a role in
cell survival and tumorigenesis. It is overexpressed in
many primary tumors including colon, esophageal, and
mammary tumors. PAK4 has also been implicated in viral
and bacterial infection pathways.
Length = 292
Score = 67.7 bits (165), Expect = 4e-12
Identities = 57/210 (27%), Positives = 108/210 (51%), Gaps = 24/210 (11%)
Query: 380 LDKAGILGDGSYSVCRRCVEKSTGQEYAVKIIS-RKIDCSE----EINLLRACQGHPNIV 434
LD +G+GS + KS+G+ AVK + RK E E+ ++R Q H N+V
Sbjct: 22 LDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQ-HENVV 80
Query: 435 NLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV 494
++ + ++V+E L+GG L D + E + + + ++ A+ +H++GV
Sbjct: 81 EMYNSYLVGDELWVVMEFLEGGALTDIVTHTR---MNEEQIAAVCLAVLKALSVLHAQGV 137
Query: 495 VHRDLKPENLLFSDPAGDNIKVVDFGFACL------KRESL-HTPCFTLQYAAPEVLRQD 547
+HRD+K +++L + +K+ DFGF +R+SL TP + APE++
Sbjct: 138 IHRDIKSDSILLTHDG--RVKLSDFGFCAQVSKEVPRRKSLVGTP----YWMAPELI--S 189
Query: 548 KSGYDENCDLWSLGVILVNVLRQDKSGYDE 577
+ Y D+WSLG++++ ++ + ++E
Sbjct: 190 RLPYGPEVDIWSLGIMVIEMVDGEPPYFNE 219
Score = 41.2 bits (96), Expect = 0.002
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V+E L+GG L D + E + + + ++ A+ +H++GV+HRD+K +++LL
Sbjct: 93 WVVMEFLEGGALTDIVTHTR---MNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILL 149
Query: 956 S 956
+
Sbjct: 150 T 150
Score = 33.5 bits (76), Expect = 0.44
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 16/65 (24%)
Query: 271 PPIPEDL---SPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWDDLATKRIP 327
PP ++L SP + F+ RLLV+DP +R A EL +HPF LA P
Sbjct: 233 PPKLKNLHKVSPSLKGFLDRLLVRDPAQR-----ATAAELLKHPF--------LAKAGPP 279
Query: 328 APFVP 332
+ VP
Sbjct: 280 SCIVP 284
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 67.7 bits (166), Expect = 4e-12
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 53/217 (24%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKII---SRK----IDCSEEINLLRACQGHPNIVNL-- 436
LG+G++ + + TG+ A+K I + K I EI +L+ + HPN+V L
Sbjct: 16 LGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLK-HPNVVPLID 74
Query: 437 -------------HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLV 483
V+ V Y+ +L LL+ K TE++ M QL+
Sbjct: 75 MAVERPDKSKRKRGSVYM--VTPYMDHDL---SGLLENPSVK----LTESQIKCYMLQLL 125
Query: 484 AAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA---------------CLKRES 528
++++H ++HRD+K N+L + +K+ DFG A R+
Sbjct: 126 EGINYLHENHILHRDIKAANILIDNQG--ILKIADFGLARPYDGPPPNPKGGGGGGTRK- 182
Query: 529 LHTPC-FTLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+T T Y PE+L ++ Y D+W +G +
Sbjct: 183 -YTNLVVTRWYRPPELLLGERR-YTTAVDIWGIGCVF 217
Score = 39.2 bits (92), Expect = 0.007
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 919 FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
TE++ M QL+ ++++H ++HRD+K N+L+
Sbjct: 112 LTESQIKCYMLQLLEGINYLHENHILHRDIKAANILID 149
Score = 34.6 bits (80), Expect = 0.25
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 275 EDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
L P+ D +S+LL DP +R L A + HP+F
Sbjct: 278 GKLGPEGLDLLSKLLSLDPYKR-----LTASDALEHPYF 311
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 67.7 bits (165), Expect = 5e-12
Identities = 69/233 (29%), Positives = 106/233 (45%), Gaps = 47/233 (20%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKID----CS--EEINLLRACQGHPNIVNLHCV 439
LG+G+Y+ + K T A+K I + + C+ E++LL+ + H NIV LH
Sbjct: 14 LGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLK-HANIVTLH-- 70
Query: 440 FQDEVHTYLVLELLKGGELLDR-IRQ-KGRCG--FTENEASRIMRQLVAAVHFMHSRGVV 495
D VHT L L+ E LD+ ++Q CG + + + Q++ + + H R V+
Sbjct: 71 --DIVHTDKSLTLVF--EYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVL 126
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKR---ESLHTPCFTLQYAAPEVLRQDKSGYD 552
HRDLKP+NLL ++ +K+ DFG A K ++ TL Y P+VL
Sbjct: 127 HRDLKPQNLLINERG--ELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVL-------- 176
Query: 553 ENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDD 605
LG S Y D+W +G I + M GR F + +D
Sbjct: 177 -------LG----------SSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVED 212
Score = 35.4 bits (81), Expect = 0.14
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLLS 956
Q++ + + H R V+HRDLKP+NLL++
Sbjct: 112 QILRGLAYCHRRKVLHRDLKPQNLLIN 138
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK4 is a dual-specificity PK that
phosphorylates and activates the downstream targets,
c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific
threonine and tyrosine residues. JNK and p38 are
collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. Their
activation is associated with the induction of cell
death. Mice deficient in MKK4 die during embryogenesis
and display anemia, severe liver hemorrhage, and
abnormal hepatogenesis. MKK4 may also play roles in the
immune system and in cardiac hypertrophy. It plays a
major role in cancer as a tumor and metastasis
suppressor. Under certain conditions, MKK4 is
pro-oncogenic.
Length = 288
Score = 66.6 bits (163), Expect = 1e-11
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 24/206 (11%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLR------ACQGHPN 432
DL G +G G++ + + K +G AVK I +D E+ LL P
Sbjct: 5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPY 64
Query: 433 IVNLHCVFQDEVHTYLVLELLKGG--ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMH 490
IV + E ++ +EL+ + + + + E +I V A++++
Sbjct: 65 IVKFYGALFREGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLK 124
Query: 491 SR-GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHT-------PCFTLQYAAPE 542
++HRD+KP N+L NIK+ DFG + +S+ P Y APE
Sbjct: 125 EELKIIHRDVKPSNILLDR--NGNIKLCDFGISGQLVDSIAKTRDAGCRP-----YMAPE 177
Query: 543 -VLRQDKSGYDENCDLWSLGVILVNV 567
+ + GYD D+WSLG+ L V
Sbjct: 178 RIDPSARDGYDVRSDVWSLGITLYEV 203
Score = 33.5 bits (77), Expect = 0.45
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 117 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLR 163
DL G +G G++ + + K +G AVK I +D E+ LL
Sbjct: 5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLM 51
Score = 31.2 bits (71), Expect = 2.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 10/31 (32%)
Query: 943 VVHRDLKPENLLLS----------GISGNLI 963
++HRD+KP N+LL GISG L+
Sbjct: 129 IIHRDVKPSNILLDRNGNIKLCDFGISGQLV 159
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 65.8 bits (160), Expect = 1e-11
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 430 HPNIVNLHCVF-QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHF 488
H N+V L V +++ Y+V E + G L+D +R +GR + + + A+ +
Sbjct: 58 HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 117
Query: 489 MHSRGVVHRDLKPENLLFSDPAGDNI-KVVDFGFACLKRESLHTPCFTLQYAAPEVLRQD 547
+ + VHRDL N+L S+ DN+ KV DFG + T +++ APE LR+
Sbjct: 118 LEANNFVHRDLAARNVLVSE---DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREK 174
Query: 548 KSGYDENCDLWSLGVIL 564
K + D+WS G++L
Sbjct: 175 K--FSTKSDVWSFGILL 189
Score = 36.9 bits (85), Expect = 0.036
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V E + G L+D +R +GR + + + A+ ++ + VHRDL N+L+
Sbjct: 76 YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLV 135
Query: 956 S 956
S
Sbjct: 136 S 136
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 65.5 bits (160), Expect = 2e-11
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 24/206 (11%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLL------RACQGHPN 432
DL+ LG G+Y V + TG AVK I ++ E+ LL P
Sbjct: 2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPY 61
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRI-RQKGRCGFT--ENEASRIMRQLVAAVHFM 489
V + E ++ +E++ LD+ ++ G T E+ +I +V A+ ++
Sbjct: 62 TVTFYGALFREGDVWICMEVMDTS--LDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYL 119
Query: 490 HSR-GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQ-----YAAPEV 543
HS+ V+HRD+KP N+L + G +K+ DFG + +S+ T+ Y APE
Sbjct: 120 HSKLSVIHRDVKPSNVLI-NRNG-QVKLCDFGISGYLVDSVAK---TIDAGCKPYMAPER 174
Query: 544 L--RQDKSGYDENCDLWSLGVILVNV 567
+ ++ GYD D+WSLG+ ++ +
Sbjct: 175 INPELNQKGYDVKSDVWSLGITMIEL 200
Score = 42.8 bits (101), Expect = 5e-04
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 11/54 (20%)
Query: 921 ENEASRIMRQLVAAVHFMHSR-GVVHRDLKPENLLLS----------GISGNLI 963
E+ +I +V A+ ++HS+ V+HRD+KP N+L++ GISG L+
Sbjct: 102 EDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLV 155
Score = 36.6 bits (85), Expect = 0.045
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 240 SLIIFFIILSFTLSFIHDYYHI---QYRRILKTEPP-IPED-LSPDVADFISRLLVKDPR 294
SL I I L+ T F +D + Q +++++ P +P + SP+ DF+++ L K+ +
Sbjct: 192 SLGITMIELA-TGRFPYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYK 250
Query: 295 RRLGGGELDAEELKRHPFF 313
R + EL +HPFF
Sbjct: 251 ER-----PNYPELLQHPFF 264
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 65.2 bits (159), Expect = 2e-11
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 22/218 (10%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKI----DCSEEINLLRACQGHPNIVNLHCVFQ 441
LG G + V + A+K+I D EE ++ HPN+V L+ V
Sbjct: 12 LGSGQFGVVHLGKWRGKID-VAIKMIREGAMSEDDFIEEAKVMMKLS-HPNLVQLYGVCT 69
Query: 442 DEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKP 501
+ ++V E + G LL+ +R++ TE + + A+ ++ S G +HRDL
Sbjct: 70 KQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLD-MCSDVCEAMEYLESNGFIHRDLAA 128
Query: 502 ENLLFSDPAGDN-IKVVDFGFACLKRESLHTPC----FTLQYAAPEVLRQDKSGYDENCD 556
N L + DN +KV DFG A + +T F +++A PEV D S + D
Sbjct: 129 RNCLVGE---DNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVF--DYSRFSSKSD 183
Query: 557 LWSLGVILVNVLRQDKSGYD-----ENCDLWSLGVILY 589
+WS GV++ V + K Y+ E + S G LY
Sbjct: 184 VWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLY 221
Score = 33.2 bits (76), Expect = 0.47
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
++V E + G LL+ +R++ TE + + A+ ++ S G +HRDL N L+
Sbjct: 75 FIVTEYMANGCLLNYLRERKGKLGTEWLLD-MCSDVCEAMEYLESNGFIHRDLAARNCLV 133
Query: 956 SGISGNLIKI 965
N++K+
Sbjct: 134 G--EDNVVKV 141
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 64.5 bits (157), Expect = 3e-11
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
H +V L+ V + Y+V E + G LL+ +R+ G+ F ++ + + + + ++
Sbjct: 58 HEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGK-RFQPSQLLEMCKDVCEGMAYL 116
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPC----FTLQYAAPEVLR 545
S+ +HRDL N L D +KV DFG + + +T F ++++ PEVL
Sbjct: 117 ESKQFIHRDLAARNCLVDDQG--CVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLL 174
Query: 546 QDKSGYDENCDLWSLGVILVNVLRQDKSGYD 576
K + D+W+ GV++ V K Y+
Sbjct: 175 YSK--FSSKSDVWAFGVLMWEVYSLGKMPYE 203
Score = 33.3 bits (76), Expect = 0.42
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V E + G LL+ +R+ G+ F ++ + + + + ++ S+ +HRDL N L+
Sbjct: 75 YIVTEYMSNGCLLNYLREHGK-RFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLV 133
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 3.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 3 (TAO3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 65.4 bits (159), Expect = 3e-11
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS--------RKIDCSEEINLLRACQGHPNIVNLH 437
+G GS+ T + AVK +S + D +E+ L+ + HPN +
Sbjct: 29 IGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLK-HPNTIEYK 87
Query: 438 CVFQDEVHTYLVLELLKGG--ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
+ E +LV+E G +LL+ ++ E E + I + + ++HS ++
Sbjct: 88 GCYLKEHTAWLVMEYCLGSASDLLEVHKKP----LQEVEIAAITHGALQGLAYLHSHNMI 143
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEV-LRQDKSGYDEN 554
HRD+K N+L ++P +K+ DFG A + ++ T + APEV L D+ YD
Sbjct: 144 HRDIKAGNILLTEPG--QVKLADFGSASKSSPA-NSFVGTPYWMAPEVILAMDEGQYDGK 200
Query: 555 CDLWSLGVILVNVLRQDKSGYDEN 578
D+WSLG+ + + + ++ N
Sbjct: 201 VDVWSLGITCIELAERKPPLFNMN 224
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 63.9 bits (155), Expect = 5e-11
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
HPNIV L V + Y+V+EL++GG+ L +R +G E +++ A + ++
Sbjct: 52 HPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEG-PRLKVKELIQMVENAAAGMEYL 110
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPC-----FTLQYAAPEVL 544
S+ +HRDL N L ++ + +K+ DFG + + + ++ +++ APE L
Sbjct: 111 ESKHCIHRDLAARNCLVTEK--NVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEAL 168
Query: 545 RQDKSGYDENCDLWSLGVIL 564
+ Y D+WS G++L
Sbjct: 169 NYGR--YSSESDVWSFGILL 186
Score = 38.8 bits (90), Expect = 0.007
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V+EL++GG+ L +R +G E +++ A + ++ S+ +HRDL N L+
Sbjct: 69 YIVMELVQGGDFLTFLRTEG-PRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLV 127
Query: 956 SGISGNLIKI 965
+ N++KI
Sbjct: 128 T--EKNVLKI 135
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells.
Itk is expressed in T-cells and mast cells, and is
important in their development and differentiation. Of
the three Tec kinases expressed in T-cells, Itk plays
the predominant role in T-cell receptor (TCR) signaling.
It is activated by phosphorylation upon TCR crosslinking
and is involved in the pathway resulting in
phospholipase C-gamma1 activation and actin
polymerization. It also plays a role in the downstream
signaling of the T-cell costimulatory receptor CD28, the
T-cell surface receptor CD2, and the chemokine receptor
CXCR4. In addition, Itk is crucial for the development
of T-helper(Th)2 effector responses.
Length = 256
Score = 63.8 bits (155), Expect = 6e-11
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 9/151 (5%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
HP +V L+ V + LV E ++ G L D +R + R F++ + + + ++
Sbjct: 58 HPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQ-RGKFSQETLLGMCLDVCEGMAYL 116
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACL----KRESLHTPCFTLQYAAPEVLR 545
S V+HRDL N L + +KV DFG + S F +++++PEV
Sbjct: 117 ESSNVIHRDLAARNCLVGE--NQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFS 174
Query: 546 QDKSGYDENCDLWSLGVILVNVLRQDKSGYD 576
K Y D+WS GV++ V + K+ Y+
Sbjct: 175 FSK--YSSKSDVWSFGVLMWEVFSEGKTPYE 203
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 63.7 bits (155), Expect = 6e-11
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 10/154 (6%)
Query: 419 EEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRI 478
E NL++ Q HP +V L+ V E Y++ E ++ G L+D ++ T N+ +
Sbjct: 50 AEANLMKQLQ-HPRLVRLYAVVTQE-PIYIITEYMENGSLVDFLKTPEGIKLTINKLIDM 107
Query: 479 MRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHT----PCF 534
Q+ + F+ + +HRDL+ N+L S+ K+ DFG A L ++ +T F
Sbjct: 108 AAQIAEGMAFIERKNYIHRDLRAANILVSETL--CCKIADFGLARLIEDNEYTAREGAKF 165
Query: 535 TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVL 568
+++ APE + + + D+WS G++L ++
Sbjct: 166 PIKWTAPEAI--NYGTFTIKSDVWSFGILLTEIV 197
Score = 33.7 bits (77), Expect = 0.40
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y++ E ++ G L+D ++ T N+ + Q+ + F+ + +HRDL+ N+L+
Sbjct: 76 YIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILV 135
Query: 956 S 956
S
Sbjct: 136 S 136
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 65.0 bits (158), Expect = 7e-11
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 18/193 (9%)
Query: 397 CVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGG 456
C++ T + +K R + E ++LRA HP+I+ L F T L+L K
Sbjct: 111 CIDNKTCEHVVIKAGQRG-GTATEAHILRAIN-HPSIIQLKGTFTYNKFTCLILPRYKT- 167
Query: 457 ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKV 516
+L + K + A I R ++ A+ ++H ++HRD+K EN+ + P GD + +
Sbjct: 168 DLYCYLAAKRNIAICDILA--IERSVLRAIQYLHENRIIHRDIKAENIFINHP-GD-VCL 223
Query: 517 VDFGFAC----LKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQ-- 570
DFG AC + + T+ APE+L +D Y D+WS G++L +
Sbjct: 224 GDFGAACFPVDINANKYYGWAGTIATNAPELLARDP--YGPAVDIWSAGIVLFEMATCHD 281
Query: 571 ---DKSGYDENCD 580
+K G D +CD
Sbjct: 282 SLFEKDGLDGDCD 294
Score = 32.7 bits (74), Expect = 0.88
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 927 IMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
I R ++ A+ ++H ++HRD+K EN+ ++
Sbjct: 187 IERSVLRAIQYLHENRIIHRDIKAENIFIN 216
>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional.
Length = 392
Score = 64.5 bits (157), Expect = 9e-11
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 37/213 (17%)
Query: 408 VKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGR 467
VK ++ EI++L+ H I+NL ++ + +V+ K +L + + G
Sbjct: 124 VKAVTGGKTPGREIDILKTIS-HRAIINLIHAYRWKSTVCMVMPKYKC-DLFTYVDRSGP 181
Query: 468 CGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRE 527
+A I R+L+ A+ ++H RG++HRD+K EN+ +P +N + DFG AC
Sbjct: 182 LPL--EQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEP--ENAVLGDFGAACKLDA 237
Query: 528 SLHTP-CF----TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLW 582
TP C+ TL+ +PE+L D Y D+W
Sbjct: 238 HPDTPQCYGWSGTLETNSPELLALDP--------------------------YCAKTDIW 271
Query: 583 SLGVILYTMLCGRVPFHARSRDDSALSIMARIK 615
S G++L+ M V + S+ + + I+
Sbjct: 272 SAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIR 304
Score = 39.4 bits (92), Expect = 0.008
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 922 NEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
+A I R+L+ A+ ++H RG++HRD+K EN+ L
Sbjct: 185 EQAITIQRRLLEALAYLHGRGIIHRDVKTENIFL 218
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 1.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 1 (TAO1) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived
sterile 20-like kinase 2 (PSK2). TAO1 activates the p38
MAPK through direct interaction with and activation of
MEK3. TAO1 is highly expressed in the brain and may play
a role in neuronal apoptosis. TAO1 interacts with the
checkpoint proteins BubR1 and Mad2, and plays an
important role in regulating mitotic progression, which
is required for both chromosome congression and
checkpoint-induced anaphase delay. TAO1 may play a role
in protecting genomic stability.
Length = 317
Score = 63.6 bits (154), Expect = 1e-10
Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 19/204 (9%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIIS--------RKIDCSEEINLLRACQGHPNIVNLH 437
+G GS+ + T + A+K +S + D +E+ L+ + HPN +
Sbjct: 33 IGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIK-HPNSIEYK 91
Query: 438 CVFQDEVHTYLVLELLKGG--ELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
+ E +LV+E G +LL+ ++ E E + I + + ++HS ++
Sbjct: 92 GCYLREHTAWLVMEYCLGSASDLLEVHKKP----LQEVEIAAITHGALQGLAYLHSHNMI 147
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQYAAPEV-LRQDKSGYDEN 554
HRD+K N+L ++P +K+ DFG A + + ++ T + APEV L D+ YD
Sbjct: 148 HRDIKAGNILLTEPG--QVKLADFGSASIASPA-NSFVGTPYWMAPEVILAMDEGQYDGK 204
Query: 555 CDLWSLGVILVNVLRQDKSGYDEN 578
D+WSLG+ + + + ++ N
Sbjct: 205 VDVWSLGITCIELAERKPPLFNMN 228
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 62.7 bits (152), Expect = 1e-10
Identities = 47/212 (22%), Positives = 92/212 (43%), Gaps = 54/212 (25%)
Query: 419 EEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRI 478
EE NL++ Q H +V L+ V E Y++ E + G LLD ++ +E ++
Sbjct: 50 EEANLMKTLQ-HDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKS--------DEGGKV 100
Query: 479 M--------RQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLH 530
+ Q+ + ++ + +HRDL+ N+L S+ K+ DFG A + ++ +
Sbjct: 101 LLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESL--MCKIADFGLARVIEDNEY 158
Query: 531 T----PCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGV 586
T F +++ APE + + + D+WS G+
Sbjct: 159 TAREGAKFPIKWTAPEAI--------------------------NFGSFTIKSDVWSFGI 192
Query: 587 ILYTMLC-GRVPFHARSRDDSALSIMARIKEG 617
+LY ++ G++P+ S D +M+ ++ G
Sbjct: 193 LLYEIVTYGKIPYPGMSNSD----VMSALQRG 220
Score = 30.8 bits (69), Expect = 3.0
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 16/69 (23%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIM--------RQLVAAVHFMHSRGVVHRD 947
Y++ E + G LLD ++ +E +++ Q+ + ++ + +HRD
Sbjct: 77 YIITEYMAKGSLLDFLKS--------DEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRD 128
Query: 948 LKPENLLLS 956
L+ N+L+S
Sbjct: 129 LRAANVLVS 137
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not
regulated by MAP2Ks. MAPK6 is expressed ubiquitously
with highest amounts in brain and skeletal muscle. It
may be involved in the control of cell differentiation
by negatively regulating cell cycle progression in
certain conditions. It may also play a role in
glucose-induced insulin secretion. MAPK6 and MAPK4
cooperate to regulate the activity of MAPK-activated
protein kinase 5 (MK5), leading to its relocation to the
cytoplasm and exclusion from the nucleus. The MAPK6/MK5
and MAPK4/MK5 pathways may play critical roles in
embryonic and post-natal development.
Length = 342
Score = 63.6 bits (155), Expect = 1e-10
Identities = 70/295 (23%), Positives = 118/295 (40%), Gaps = 46/295 (15%)
Query: 386 LGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE------EINLLRACQGHPNIVNLHCV 439
LG GS + V+ + AVK I D EI ++R H NIV ++ V
Sbjct: 13 LGCGSNGLVFSAVDSDCDKRVAVKKIVLT-DPQSVKHALREIKIIRRLD-HDNIVKVYEV 70
Query: 440 FQDEVH--------------TYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAA 485
Y+V E ++ L + ++G +E A M QL+
Sbjct: 71 LGPSGSDLTEDVGSLTELNSVYIVQEYMETD--LANVLEQGP--LSEEHARLFMYQLLRG 126
Query: 486 VHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACL------KRESLHTPCFTLQYA 539
+ ++HS V+HRDLKP N +F + +K+ DFG A + + L T Y
Sbjct: 127 LKYIHSANVLHRDLKPAN-VFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYR 185
Query: 540 APEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFH 599
+P +L + Y + D+W+ G I +L K + +L + +IL + VP
Sbjct: 186 SPRLLLSPNN-YTKAIDMWAAGCIFAEML-TGKPLFAGAHELEQMQLILES-----VPVV 238
Query: 600 ARSRDDSALSIMARIKEGQFNFD-----AEAWSTVSSEAKELTKSLLTVNPAQRI 649
+ L+++ + + V+ EA + + +LT NP R+
Sbjct: 239 REEDRNELLNVIP-SFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRL 292
Score = 43.6 bits (103), Expect = 4e-04
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V E ++ L + ++G +E A M QL+ + ++HS V+HRDLKP N+ +
Sbjct: 92 YIVQEYMETD--LANVLEQGP--LSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFI 147
Query: 956 S 956
+
Sbjct: 148 N 148
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 62.0 bits (151), Expect = 2e-10
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 36/210 (17%)
Query: 377 DMDLDKAGILGDGSYSVCRRCVEKSTGQ----EYAVKIISRKIDCSEEINLLR-----AC 427
+ +L+K +LG G++ + V G+ A+K++ + +L A
Sbjct: 6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMAS 65
Query: 428 QGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQ-KGRCGFTENEASRIM----RQL 482
HP++V L + L+ +L+ G LLD +R K G S+ + Q+
Sbjct: 66 VDHPHVVRLLGICLSSQVQ-LITQLMPLGCLLDYVRNHKDNIG------SQYLLNWCVQI 118
Query: 483 VAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACL---KRESLH-----TPCF 534
+ ++ + +VHRDL N+L P ++K+ DFG A L + H P
Sbjct: 119 AKGMSYLEEKRLVHRDLAARNVLVKTP--QHVKITDFGLAKLLDVDEKEYHAEGGKVP-- 174
Query: 535 TLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+++ A E + Y D+WS GV +
Sbjct: 175 -IKWMALESILHRI--YTHKSDVWSYGVTV 201
Score = 35.1 bits (81), Expect = 0.14
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 897 LVLELLKGGELLDRIRQ-KGRCGFTENEASRIM----RQLVAAVHFMHSRGVVHRDLKPE 951
L+ +L+ G LLD +R K G S+ + Q+ + ++ + +VHRDL
Sbjct: 85 LITQLMPLGCLLDYVRNHKDNIG------SQYLLNWCVQIAKGMSYLEEKRLVHRDLAAR 138
Query: 952 NLLLSGISGNLIKI 965
N+L+ + +KI
Sbjct: 139 NVLVK--TPQHVKI 150
>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 8.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK8 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK8
can act as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDK8 phosphorylates cyclin
H, a subunit of the general transcription factor TFIIH,
which results in the inhibition of TFIIH-dependent
phosphorylation of the C-terminal domain (CTD) of RNAP
II, facilitating the inhibition of transcription. It has
also been shown to promote transcription by a mechanism
that is likely to involve RNAP II phosphorylation. CDK8
also functions as a stimulus-specific positive
coregulator of p53 transcriptional responses.
Length = 317
Score = 62.4 bits (151), Expect = 3e-10
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 23/207 (11%)
Query: 386 LGDGSYSVCRRCVEK--STGQEYAVKIISR---KIDCSEEINLLRACQGHPNIVNLHCVF 440
+G G+Y + K ++YA+K I + EI LLR + HPN+++L VF
Sbjct: 9 VGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELK-HPNVISLQKVF 67
Query: 441 QDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMR--------QLVAAVHFMHSR 492
+ L L I + R + ++ R Q++ +H++H+
Sbjct: 68 LSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN 127
Query: 493 GVVHRDLKPENLLF--SDPAGDNIKVVDFGFACLKRE------SLHTPCFTLQYAAPEVL 544
V+HRDLKP N+L P +K+ D GFA L L T Y APE+L
Sbjct: 128 WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELL 187
Query: 545 RQDKSGYDENCDLWSLGVILVNVLRQD 571
+ Y + D+W++G I +L +
Sbjct: 188 LGARH-YTKAIDIWAIGCIFAELLTSE 213
Score = 38.5 bits (89), Expect = 0.013
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 927 IMRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
++ Q++ +H++H+ V+HRDLKP N+L+ G
Sbjct: 113 LLYQILDGIHYLHANWVLHRDLKPANILVMG 143
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 61.6 bits (149), Expect = 3e-10
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 37/209 (17%)
Query: 362 NFDKIFKGSLFFEQYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEI 421
NF ++FKG+L DK V + ++ QE +K +S E
Sbjct: 7 NFGEVFKGTL--------KDKT--------PVAVKTCKEDLPQELKIKFLS-------EA 43
Query: 422 NLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQ 481
+L+ HPNIV L V Y+V+EL+ GG+ L +R+K + + +
Sbjct: 44 RILKQYD-HPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKK-KDELKTKQLVKFALD 101
Query: 482 LVAAVHFMHSRGVVHRDLKPENLLFSDPAGDN--IKVVDFGFACLKRESLHTPC----FT 535
A + ++ S+ +HRDL N L G+N +K+ DFG + + + +++
Sbjct: 102 AAAGMAYLESKNCIHRDLAARNCL----VGENNVLKISDFGMSRQEDDGIYSSSGLKQIP 157
Query: 536 LQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+++ APE L + Y D+WS G++L
Sbjct: 158 IKWTAPEALNYGR--YSSESDVWSYGILL 184
Score = 34.6 bits (79), Expect = 0.17
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V+EL+ GG+ L +R+K + + + A + ++ S+ +HRDL N L+
Sbjct: 68 YIVMELVPGGDFLSFLRKK-KDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLV 126
Query: 956 SGISGNLIKI 965
N++KI
Sbjct: 127 G--ENNVLKI 134
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from
CDC2L1, which is represented by the two protein products
from its gene, called CDK11(p110) and CDK11(p58), as
well as the caspase-processed CDK11(p46). CDK11(p110),
CDK11(p58), and CDK11(p46)do not belong to this
subfamily. CDC2L6 is an associated protein of Mediator,
a multiprotein complex that provides a platform to
connect transcriptional and chromatin regulators and
cofactors, in order to activate and mediate RNA
polymerase II transcription. CDC2L6 is localized mainly
in the nucleus amd exerts an opposing effect to CDK8 in
VP16-dependent transcriptional activation by being a
negative regulator.
Length = 317
Score = 62.0 bits (150), Expect = 4e-10
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 25/208 (12%)
Query: 386 LGDGSYSVCRRCVEKSTG--QEYAVKIISR---KIDCSEEINLLRACQGHPNIVNLHCVF 440
+G G+Y + K +EYA+K I + EI LLR + HPN++ L VF
Sbjct: 9 VGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELK-HPNVIALQKVF 67
Query: 441 --QDEVHTYLVLELLKGGELLDRIR-------QKGRCGFTENEASRIMRQLVAAVHFMHS 491
+ +L+ + + +L I+ K + ++ Q++ +H++H+
Sbjct: 68 LSHSDRKVWLLFDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA 126
Query: 492 RGVVHRDLKPENLLF--SDPAGDNIKVVDFGFACLKRE------SLHTPCFTLQYAAPEV 543
V+HRDLKP N+L P +K+ D GFA L L T Y APE+
Sbjct: 127 NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPEL 186
Query: 544 LRQDKSGYDENCDLWSLGVILVNVLRQD 571
L + Y + D+W++G I +L +
Sbjct: 187 LLGARH-YTKAIDIWAIGCIFAELLTSE 213
Score = 38.1 bits (88), Expect = 0.015
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 927 IMRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
++ Q++ +H++H+ V+HRDLKP N+L+ G
Sbjct: 113 LLYQILDGIHYLHANWVLHRDLKPANILVMG 143
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 60.9 bits (148), Expect = 6e-10
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 17/168 (10%)
Query: 407 AVKIISRKI-----DCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDR 461
A+KI+ D +E+ L+ + H ++++L V Y++ EL++ G LL
Sbjct: 34 AIKILKSDDLLKQQDFQKEVQALKRLR-HKHLISLFAVCSVGEPVYIITELMEKGSLLAF 92
Query: 462 IRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNI--KVVDF 519
+R + Q+ + ++ + +HRDL N+L G+++ KV DF
Sbjct: 93 LRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNIL----VGEDLVCKVADF 148
Query: 520 GFACLKRESLHTPCFT---LQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
G A L +E ++ ++ APE + D+WS G++L
Sbjct: 149 GLARLIKEDVYLSSDKKIPYKWTAPEAASHGT--FSTKSDVWSFGILL 194
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 60.4 bits (146), Expect = 8e-10
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 10/161 (6%)
Query: 419 EEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRI 478
E N+++ Q H +V LH V E Y++ E + G LLD ++ +
Sbjct: 50 AEANVMKTLQ-HDKLVKLHAVVTKE-PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDF 107
Query: 479 MRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHT----PCF 534
Q+ + F+ R +HRDL+ N+L S A K+ DFG A + ++ +T F
Sbjct: 108 SAQIAEGMAFIEQRNYIHRDLRAANILVS--ASLVCKIADFGLARVIEDNEYTAREGAKF 165
Query: 535 TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGY 575
+++ APE + + + D+WS G++L+ ++ + Y
Sbjct: 166 PIKWTAPEAI--NFGSFTIKSDVWSFGILLMEIVTYGRIPY 204
Score = 30.8 bits (69), Expect = 3.1
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y++ E + G LLD ++ + Q+ + F+ R +HRDL+ N+L+
Sbjct: 76 YIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILV 135
Query: 956 S 956
S
Sbjct: 136 S 136
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 59.5 bits (144), Expect = 1e-09
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
HP +V L+ V + Y+V E ++ G LL+ +RQ+ + +++ + + + + ++
Sbjct: 58 HPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQR-QGKLSKDMLLSMCQDVCEGMEYL 116
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPC----FTLQYAAPEVLR 545
+HRDL N L S +KV DFG + +T F ++++ PEV
Sbjct: 117 ERNSFIHRDLAARNCLVSSTG--VVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFN 174
Query: 546 QDKSGYDENCDLWSLGVILVNVLRQDK 572
K Y D+WS GV++ V + K
Sbjct: 175 FSK--YSSKSDVWSFGVLMWEVFTEGK 199
Score = 31.4 bits (71), Expect = 1.8
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V E ++ G LL+ +RQ+ + +++ + + + + ++ +HRDL N L+
Sbjct: 75 YIVTEFMENGCLLNYLRQR-QGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLV 133
Query: 956 S 956
S
Sbjct: 134 S 134
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 59.5 bits (144), Expect = 2e-09
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 26/186 (13%)
Query: 404 QEYAVKIISRKIDCSEEINLLRACQ-----GHPNIVNLHCVFQDEVHTYLVLELLKGGEL 458
AVK + + E+ L+ HPNIV L V Y+++EL++GG+L
Sbjct: 27 IRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDL 86
Query: 459 LD-----RIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDN 513
L R+ + G T E I + ++ +HRDL N L S+ D
Sbjct: 87 LSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDA 146
Query: 514 IKVV---DFGFA--------CLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGV 562
+VV DFG A K P +++ APE L K + D+WS GV
Sbjct: 147 DRVVKIGDFGLARDIYKSDYYRKEGEGLLP---VRWMAPESLLDGK--FTTQSDVWSFGV 201
Query: 563 ILVNVL 568
++ +L
Sbjct: 202 LMWEIL 207
Score = 33.7 bits (77), Expect = 0.38
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 896 YLVLELLKGGELLD-----RIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKP 950
Y+++EL++GG+LL R+ + G T E I + ++ +HRDL
Sbjct: 75 YIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAA 134
Query: 951 ENLLLS---GISGNLIKI 965
N L+S + ++KI
Sbjct: 135 RNCLVSEKGYDADRVVKI 152
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 59.7 bits (144), Expect = 2e-09
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 416 DCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGG--ELLDRIRQKGRCGFTEN 473
D +E+ L+ + HPN + + E +LV+E G +LL+ ++ E
Sbjct: 61 DIIKEVRFLQKLR-HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKP----LQEV 115
Query: 474 EASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPC 533
E + + + + ++HS ++HRD+K N+L S+P +K+ DFG A + + +
Sbjct: 116 EIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPG--LVKLGDFGSASIMAPA-NXFV 172
Query: 534 FTLQYAAPEV-LRQDKSGYDENCDLWSLGVILVNV 567
T + APEV L D+ YD D+WSLG+ + +
Sbjct: 173 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 207
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 60.7 bits (147), Expect = 3e-09
Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 400 KSTGQEYAVKIISRKID---------CSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVL 450
K+ + YAVK++ +K D E + L A P IV+L+ Q + YLV+
Sbjct: 26 KNNSKLYAVKVV-KKADMINKNMVHQVQAERDAL-ALSKSPFIVHLYYSLQSANNVYLVM 83
Query: 451 ELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPA 510
E L GG++ + G F E A + + ++ A+ ++H G++HRDLKP+N+L S+
Sbjct: 84 EYLIGGDVKSLLHIYGY--FDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEG 141
Query: 511 GDNIKVVDFGFA--CLKRE 527
+IK+ DFG + L RE
Sbjct: 142 --HIKLTDFGLSKVTLNRE 158
Score = 54.5 bits (131), Expect = 2e-07
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 263 YRRILKTEPPIP---EDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFFNVIDWD 319
++ IL + P P E LS + + I LL DP +R G +ELK+HP F+ +DW+
Sbjct: 589 FQNILNRDIPWPEGEEKLSVNAQNAIEILLTMDPTKRAG-----LKELKQHPLFHGVDWE 643
Query: 320 DLATKRIPAPFVPKISNELDVSNF 343
+L + PF+P+ +E D S F
Sbjct: 644 NLQNQ--TMPFIPQPDDETDTSYF 665
Score = 49.1 bits (117), Expect = 9e-06
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
YLV+E L GG++ + G F E A + + ++ A+ ++H G++HRDLKP+N+L+
Sbjct: 80 YLVMEYLIGGDVKSLLHIYGY--FDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLI 137
Query: 956 S 956
S
Sbjct: 138 S 138
Score = 30.6 bits (69), Expect = 4.9
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 572 KSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMAR---IKEGQFNFDAEAWST 628
+ D W+LGV L+ L G PF+ + +I+ R EG+ E S
Sbjct: 554 GKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQVFQNILNRDIPWPEGE-----EKLSV 608
Query: 629 VSSEAKELTKSLLTVNPAQRIRMMRVK 655
+ A E+ LLT++P +R + +K
Sbjct: 609 NAQNAIEI---LLTMDPTKRAGLKELK 632
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 60.0 bits (145), Expect = 3e-09
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 23/200 (11%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRACQGHPNIVNL------HC 438
I+G+GS+ V + T ++ A+K + + L+ H NI+ L C
Sbjct: 73 IIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTEC 132
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIM-------RQLVAAVHFMHS 491
++E + +L + + E + + K + N + + QL A+ ++HS
Sbjct: 133 FKKNEKNIFLNVVM----EFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHS 188
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFA---CLKRESLHTPCFTLQYAAPEVLRQDK 548
+ + HRDLKP+NLL DP +K+ DFG A + S+ C Y APE L
Sbjct: 189 KFICHRDLKPQNLLI-DPNTHTLKLCDFGSAKNLLAGQRSVSYICSRF-YRAPE-LMLGA 245
Query: 549 SGYDENCDLWSLGVILVNVL 568
+ Y + DLWSLG I+ ++
Sbjct: 246 TNYTTHIDLWSLGCIIAEMI 265
Score = 36.9 bits (85), Expect = 0.052
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLL 955
QL A+ ++HS+ + HRDLKP+NLL+
Sbjct: 178 QLCRALAYIHSKFICHRDLKPQNLLI 203
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 58.7 bits (142), Expect = 5e-09
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 407 AVKIISRKIDCSE------EINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLD 460
AVK++ SE E+ ++ H NIVNL ++ E G+LL+
Sbjct: 69 AVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLN 128
Query: 461 RIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFG 520
+R+K T + Q+ + F+ S+ +HRDL N+L + G +K+ DFG
Sbjct: 129 FLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTH--GKIVKICDFG 186
Query: 521 FACLKRESLHTPCFT--------LQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
A R+ ++ + +++ APE + Y D+WS G++L
Sbjct: 187 LA---RDIMNDSNYVVKGNARLPVKWMAPESIFNCV--YTFESDVWSYGILL 233
Score = 41.3 bits (97), Expect = 0.002
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 895 TYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLL 954
++ E G+LL+ +R+K T + Q+ + F+ S+ +HRDL N+L
Sbjct: 114 ILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVL 173
Query: 955 LSGISGNLIKI 965
L+ G ++KI
Sbjct: 174 LT--HGKIVKI 182
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 58.1 bits (141), Expect = 5e-09
Identities = 44/208 (21%), Positives = 83/208 (39%), Gaps = 39/208 (18%)
Query: 386 LGDGSYS-----VCRRCVEKSTGQEYAVKIISRKIDCSEEINLLRA--------CQGHPN 432
LG GS+ + + V+ A+K ++ E I L C +
Sbjct: 14 LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNC---HH 70
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQK-----GRCGFTENEASRIMR---QLVA 484
+V L V T +V+EL+ G+L +R + G + ++ ++
Sbjct: 71 VVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIAD 130
Query: 485 AVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFT--------L 536
+ ++ ++ VHRDL N + ++ +K+ DFG R+ T + +
Sbjct: 131 GMAYLAAKKFVHRDLAARNCMVAE--DLTVKIGDFGMT---RDIYETDYYRKGGKGLLPV 185
Query: 537 QYAAPEVLRQDKSGYDENCDLWSLGVIL 564
++ APE L+ + D+WS GV+L
Sbjct: 186 RWMAPESLKDGV--FTTKSDVWSFGVVL 211
Score = 33.9 bits (78), Expect = 0.31
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 894 HTYLVLELLKGGELLDRIRQK-----GRCGFTENEASRIMR---QLVAAVHFMHSRGVVH 945
T +V+EL+ G+L +R + G + ++ ++ + ++ ++ VH
Sbjct: 83 PTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVH 142
Query: 946 RDLKPENLLLSG 957
RDL N +++
Sbjct: 143 RDLAARNCMVAE 154
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 58.2 bits (141), Expect = 5e-09
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 404 QEYAVKIISRKIDCSE--EINLLR--ACQG---HPNIVNLHCVFQDEVHTYLVLELLKGG 456
E V + + CSE E + L H NIV L V + + +++LEL+ GG
Sbjct: 35 VELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGG 94
Query: 457 ELLDRIRQKGRCGFTENEASRIMRQLV-------AAVHFMHSRGVVHRDLKPENLLFSDP 509
+L +R+ R E +S M+ L+ ++ +HRD+ N L +
Sbjct: 95 DLKSFLRE-NR-PRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCK 152
Query: 510 AGDNI-KVVDFGFA 522
+ K+ DFG A
Sbjct: 153 GPGRVAKIADFGMA 166
Score = 37.4 bits (87), Expect = 0.024
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLV-------AAVHFMHSRGVVHRDL 948
+++LEL+ GG+L +R+ R E +S M+ L+ ++ +HRD+
Sbjct: 85 FILLELMAGGDLKSFLRE-NR-PRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDI 142
Query: 949 KPENLLLS 956
N LL+
Sbjct: 143 AARNCLLT 150
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 58.7 bits (142), Expect = 6e-09
Identities = 32/109 (29%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Query: 474 EASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPC 533
+A I +Q++ + ++H++ ++HRD+K EN+ +D D + + D G A + + P
Sbjct: 158 QALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDV--DQVCIGDLGAA---QFPVVAPA 212
Query: 534 F-----TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDE 577
F T++ APEVL +DK Y+ D+WS G++L +L + +++
Sbjct: 213 FLGLAGTVETNAPEVLARDK--YNSKADIWSAGIVLFEMLAYPSTIFED 259
Score = 33.3 bits (76), Expect = 0.56
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 923 EASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSGIS 959
+A I +Q++ + ++H++ ++HRD+K EN+ ++ +
Sbjct: 158 QALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVD 194
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 58.9 bits (142), Expect = 7e-09
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 12/104 (11%)
Query: 474 EASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVV-DFGFACLKRESLHTP 532
+ IM+QL+ AV ++H + ++HRD+K EN+ + D V+ DFG A + E
Sbjct: 268 QTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLN---CDGKIVLGDFGTA-MPFEKEREA 323
Query: 533 -----CFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQD 571
T+ +PE+L D GY E D+WS G+IL+++L D
Sbjct: 324 FDYGWVGTVATNSPEILAGD--GYCEITDIWSCGLILLDMLSHD 365
Score = 45.1 bits (106), Expect = 2e-04
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 923 EASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
+ IM+QL+ AV ++H + ++HRD+K EN+ L+
Sbjct: 268 QTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNC 302
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 57.6 bits (139), Expect = 9e-09
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 44/216 (20%)
Query: 380 LDKAGILGDGSYS----VCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRAC 427
L K +LG+G + C TG+ AVK + K +C + EIN+L+
Sbjct: 6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVK--TLKRECGQQNTSGWKKEINILKTL 63
Query: 428 QGHPNIVNLH--CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIM---RQL 482
H NIV C Q L++E + G L D + K + ++++ +Q+
Sbjct: 64 Y-HENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYL-PKHKLNL-----AQLLLFAQQI 116
Query: 483 VAAVHFMHSRGVVHRDLKPENLLFSDPAGDN-IKVVDFGFA---------CLKRESLHTP 532
+ ++HS+ +HRDL N+L + D +K+ DFG A RE +P
Sbjct: 117 CEGMAYLHSQHYIHRDLAARNVLLDN---DRLVKIGDFGLAKAVPEGHEYYRVREDGDSP 173
Query: 533 CFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVL 568
F + A E L+++K Y D+WS GV L +L
Sbjct: 174 VF---WYAVECLKENKFSYAS--DVWSFGVTLYELL 204
Score = 30.6 bits (69), Expect = 3.5
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIM---RQLVAAVHFMHSRGVVHRDLKPENL 953
L++E + G L D + K + ++++ +Q+ + ++HS+ +HRDL N+
Sbjct: 85 LIMEYVPLGSLRDYL-PKHKLNL-----AQLLLFAQQICEGMAYLHSQHYIHRDLAARNV 138
Query: 954 LLSGISGNLIKI 965
LL + L+KI
Sbjct: 139 LLD--NDRLVKI 148
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 57.4 bits (139), Expect = 9e-09
Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 44/207 (21%)
Query: 386 LGDGSYSVCRRC----VEKSTGQEYAVKIISR------KIDCSEEINLLRACQGHPNIVN 435
LG+G + C + +TG++ AVK ++ + D EI +LR H NIV
Sbjct: 12 LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLD-HENIVK 70
Query: 436 LH--CVFQDEVHTYLVLELLKGGELLDRIR-QKGRCGFTENEASRIMR---QLVAAVHFM 489
C L++E L G L D ++ + + R++ Q+ + ++
Sbjct: 71 YKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQ-----INLKRLLLFSSQICKGMDYL 125
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACL------------KRESLHTPCFTLQ 537
S+ +HRDL N+L D +K+ DFG A + ES P F
Sbjct: 126 GSQRYIHRDLAARNILVESE--DLVKISDFGLAKVLPEDKDYYYVKEPGES---PIF--- 177
Query: 538 YAAPEVLRQDKSGYDENCDLWSLGVIL 564
+ APE LR K D+WS GV L
Sbjct: 178 WYAPECLRTSKFSSAS--DVWSFGVTL 202
Score = 32.0 bits (73), Expect = 1.4
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 897 LVLELLKGGELLDRIR-QKGRCGFTENEASRIMR---QLVAAVHFMHSRGVVHRDLKPEN 952
L++E L G L D ++ + + R++ Q+ + ++ S+ +HRDL N
Sbjct: 85 LIMEYLPSGSLRDYLQRHRDQ-----INLKRLLLFSSQICKGMDYLGSQRYIHRDLAARN 139
Query: 953 LLLSGISGNLIKI 965
+L+ S +L+KI
Sbjct: 140 ILVE--SEDLVKI 150
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 57.0 bits (137), Expect = 1e-08
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 31/161 (19%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMR--------- 480
H +V L+ V +E Y+V E + G LLD F + E + +R
Sbjct: 60 HEKLVQLYAVVSEE-PIYIVTEYMSKGSLLD---------FLKGEMGKYLRLPQLVDMAA 109
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNI--KVVDFGFACLKRESLHT----PCF 534
Q+ + + ++ VHRDL+ N+L G+N+ KV DFG A L ++ +T F
Sbjct: 110 QIASGMAYVERMNYVHRDLRAANIL----VGENLVCKVADFGLARLIEDNEYTARQGAKF 165
Query: 535 TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGY 575
+++ APE + + D+WS G++L + + + Y
Sbjct: 166 PIKWTAPEAALYGR--FTIKSDVWSFGILLTELTTKGRVPY 204
Score = 29.6 bits (66), Expect = 7.1
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMR---------QLVAAVHFMHSRGVVHR 946
Y+V E + G LLD F + E + +R Q+ + + ++ VHR
Sbjct: 76 YIVTEYMSKGSLLD---------FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHR 126
Query: 947 DLKPENLLL 955
DL+ N+L+
Sbjct: 127 DLRAANILV 135
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 58.6 bits (141), Expect = 2e-08
Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 60/257 (23%)
Query: 420 EINLLRACQGHPNIVNLHCVFQDEVHT--YLVLELLKGGELLDRIRQ--KGRCGFTENEA 475
E+N++R + H NIV F ++ + Y+++E G+L I++ K E+
Sbjct: 62 EVNVMRELK-HKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAI 120
Query: 476 SRIMRQLVAAVHFMHS-------RGVVHRDLKPENLLFSD---------PAGDNI----- 514
I RQL+ A+ + H+ V+HRDLKP+N+ S +N+
Sbjct: 121 VDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPI 180
Query: 515 -KVVDFGFA-CLKRESLHTPCF-TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQD 571
K+ DFG + + ES+ C T Y +PE+L L +
Sbjct: 181 AKIGDFGLSKNIGIESMAHSCVGTPYYWSPELL-----------------------LHET 217
Query: 572 KSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSALSIMARIKEGQFNFDAEAWSTVSS 631
KS YD+ D+W+LG I+Y + G+ PFH + +S + R + S
Sbjct: 218 KS-YDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELKRGPDLPIKGK-------SK 269
Query: 632 EAKELTKSLLTVNPAQR 648
E L K+LL ++ +R
Sbjct: 270 ELNILIKNLLNLSAKER 286
Score = 36.6 bits (84), Expect = 0.083
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 885 FVNRSRYNVHTYLVLELLKGGELLDRIRQ--KGRCGFTENEASRIMRQLVAAVHFMHS-- 940
F+N++ N Y+++E G+L I++ K E+ I RQL+ A+ + H+
Sbjct: 81 FLNKA--NQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLK 138
Query: 941 -----RGVVHRDLKPENLLLS 956
V+HRDLKP+N+ LS
Sbjct: 139 DGPNGERVLHRDLKPQNIFLS 159
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 53.9 bits (130), Expect = 2e-08
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 18/132 (13%)
Query: 400 KSTGQEYAVKIIS---RKIDCSEEINLLRACQGHPNIV-NLHCVFQDEVHTYLVLELLKG 455
+ ++Y +KI + D E+ +L+ V + + + +YL++E ++G
Sbjct: 18 GTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEG 77
Query: 456 GELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS---RGVVHRDLKPENLLFSDPAGD 512
L + +E E I QL + +H + H DL P N+L D G
Sbjct: 78 ETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDD--GK 126
Query: 513 NIKVVDFGFACL 524
+ ++D+ +A
Sbjct: 127 ILGIIDWEYAGY 138
Score = 33.5 bits (77), Expect = 0.21
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 894 HTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS---RGVVHRDLKP 950
+YL++E ++G L + +E E I QL + +H + H DL P
Sbjct: 67 WSYLLMEWIEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHP 117
Query: 951 ENLLLSGISGNLIKI 965
N+L+ G ++ I
Sbjct: 118 GNILVDD--GKILGI 130
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 56.3 bits (136), Expect = 3e-08
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLK--RESLHTP--CFTL 536
Q++ + ++HS G++HRD+KP NLL + +K+ DFG A ++ ES H T
Sbjct: 111 QILRGLKYLHSAGILHRDIKPGNLLVNSNC--VLKICDFGLARVEEPDESKHMTQEVVTQ 168
Query: 537 QYAAPEVLRQDKSGYDENCDLWSLGVILVNVL 568
Y APE+L + Y D+WS+G I +L
Sbjct: 169 YYRAPEILMGSRH-YTSAVDIWSVGCIFAELL 199
Score = 36.3 bits (84), Expect = 0.073
Identities = 15/36 (41%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLLSGISGNLIKI 965
Q++ + ++HS G++HRD+KP NLL++ S ++KI
Sbjct: 111 QILRGLKYLHSAGILHRDIKPGNLLVN--SNCVLKI 144
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 57.1 bits (138), Expect = 3e-08
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 28/114 (24%)
Query: 440 FQDEVHTYLVLE---LLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
F V YL+ + L KG E ++I Q IMRQ++ A+ +HS G+VH
Sbjct: 231 FPYNVEPYLLGKVQDLPKGLERENKIIQ------------TIMRQILFALDGLHSTGIVH 278
Query: 497 RDLKPENLLFSDPAGDNIKVVD--------FGFACLKRESLHTPCFTLQYAAPE 542
RD+KP+N++FS+ +G + K++D G + +E L P +YAAPE
Sbjct: 279 RDVKPQNIIFSEGSG-SFKIIDLGAAADLRVGINYIPKEFLLDP----RYAAPE 327
Score = 54.8 bits (132), Expect = 2e-07
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 15/73 (20%)
Query: 891 YNVHTYLVLE---LLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 947
YNV YL+ + L KG E ++I Q IMRQ++ A+ +HS G+VHRD
Sbjct: 233 YNVEPYLLGKVQDLPKGLERENKIIQ------------TIMRQILFALDGLHSTGIVHRD 280
Query: 948 LKPENLLLSGISG 960
+KP+N++ S SG
Sbjct: 281 VKPQNIIFSEGSG 293
>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine
Kinase, Tie1. Protein Tyrosine Kinase (PTK) family;
Tie1; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie1 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. No specific ligand has been
identified for Tie1, although the angiopoietin, Ang-1,
binds to Tie1 through integrins at high concentrations.
In vivo studies of Tie1 show that it is critical in
vascular development.
Length = 297
Score = 55.8 bits (134), Expect = 4e-08
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 40/216 (18%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGH 430
D+ ++G+G++ R + K G + I K SE E+ +L H
Sbjct: 3 DIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHH 62
Query: 431 PNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRC-----------GFTENEASRIM 479
PNI+NL ++ + Y+ +E G LLD +R K R G S+ +
Sbjct: 63 PNIINLLGACENRGYLYIAIEYAPYGNLLDFLR-KSRVLETDPAFAKEHGTASTLTSQQL 121
Query: 480 RQLVAAV----HFMHSRGVVHRDLKPENLLFSDPAGDNI--KVVDFGFA-----CLKRES 528
Q + V ++ + +HRDL N+L G+N+ K+ DFG + +K+
Sbjct: 122 LQFASDVATGMQYLSEKQFIHRDLAARNVL----VGENLASKIADFGLSRGEEVYVKKTM 177
Query: 529 LHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
P +++ A E L + S Y D+WS GV+L
Sbjct: 178 GRLP---VRWMAIESL--NYSVYTTKSDVWSFGVLL 208
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 55.0 bits (132), Expect = 7e-08
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 39/232 (16%)
Query: 374 EQYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS------EEINLLRAC 427
E D D +K LG G+ V + K +G A K+I +I + E+ +L C
Sbjct: 1 ELKDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC 60
Query: 428 QGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVH 487
P IV + F + + +E + GG L +++ GR E ++ ++ +
Sbjct: 61 NS-PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR--IPEQILGKVSIAVIKGLT 117
Query: 488 FMHSR-GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL-HTPCFTLQYAAPEVLR 545
++ + ++HRD+KP N+L + IK+ DFG + +S+ ++ T Y +PE
Sbjct: 118 YLREKHKIMHRDVKPSNILVNSRG--EIKLCDFGVSGQLIDSMANSFVGTRSYMSPE--- 172
Query: 546 QDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVP 597
R + Y D+WS+G+ L M GR P
Sbjct: 173 -----------------------RLQGTHYSVQSDIWSMGLSLVEMAIGRYP 201
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 54.2 bits (130), Expect = 8e-08
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 14/163 (8%)
Query: 419 EEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRI 478
EE +++ + H +V L+ V +E Y+V E + G LLD ++ +
Sbjct: 50 EEAQIMKKLR-HDKLVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDM 107
Query: 479 MRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNI--KVVDFGFACLKRESLHT----P 532
Q+ A + ++ +HRDL+ N+L GD + K+ DFG A L ++ +T
Sbjct: 108 AAQVAAGMAYIERMNYIHRDLRSANIL----VGDGLVCKIADFGLARLIEDNEYTARQGA 163
Query: 533 CFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGY 575
F +++ APE + + D+WS G++L ++ + + Y
Sbjct: 164 KFPIKWTAPEAALYGR--FTIKSDVWSFGILLTELVTKGRVPY 204
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 54.3 bits (130), Expect = 8e-08
Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 419 EEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRI 478
+E +++ + H +V L+ V +E Y+V E + G LLD +++ + +
Sbjct: 50 QEAQIMKKLR-HDKLVPLYAVVSEE-PIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDM 107
Query: 479 MRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNI--KVVDFGFACLKRESLHT----P 532
Q+ + ++ +HRDL+ N+L GDN+ K+ DFG A L ++ +T
Sbjct: 108 AAQIADGMAYIERMNYIHRDLRAANIL----VGDNLVCKIADFGLARLIEDNEYTARQGA 163
Query: 533 CFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGY 575
F +++ APE + + D+WS G++L ++ + + Y
Sbjct: 164 KFPIKWTAPEAALYGR--FTIKSDVWSFGILLTELVTKGRVPY 204
Score = 30.0 bits (67), Expect = 6.0
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 896 YLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
Y+V E + G LLD +++ + + Q+ + ++ +HRDL+ N+L+
Sbjct: 76 YIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILV 135
Query: 956 S 956
Sbjct: 136 G 136
>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK
kinase (MEK) subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
and MEK2 are dual-specificity PKs that phosphorylate and
activate the downstream targets, ERK(extracellular
signal-regulated kinase) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1/2, and finally to ERK1/2. The ERK
cascade plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. This cascade has also been
implicated in synaptic plasticity, migration,
morphological determination, and stress response
immunological reactions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1/2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 308
Score = 54.7 bits (132), Expect = 9e-08
Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 39/227 (17%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS------EEINLLRACQGHPN 432
D +K G LG G+ V + + + +G A K+I +I + E+ +L C P
Sbjct: 2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNS-PY 60
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS- 491
IV + F + + +E + GG L +++ GR EN +I ++ + ++
Sbjct: 61 IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR--IPENILGKISIAVLRGLTYLREK 118
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL-HTPCFTLQYAAPEVLRQDKSG 550
++HRD+KP N+L + G+ IK+ DFG + +S+ ++ T Y +PE
Sbjct: 119 HKIMHRDVKPSNILVNS-RGE-IKLCDFGVSGQLIDSMANSFVGTRSYMSPE-------- 168
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVP 597
R + Y D+WSLG+ L M GR P
Sbjct: 169 ------------------RLQGTHYTVQSDIWSLGLSLVEMAIGRYP 197
Score = 35.1 bits (81), Expect = 0.16
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 266 ILKTEPPIPED--LSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPFF 313
I+ PP S + DF+ + L K+P+ R D +EL +HPF
Sbjct: 246 IVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKER-----ADLKELTKHPFI 290
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 54.1 bits (130), Expect = 9e-08
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 385 ILGDGSY-SVCRRCVEKSTGQEYAVKIISRKIDCSE--------EINLLRACQGHPNIVN 435
++G G + VCR ++ +E V I + K +E E +++ HPNI++
Sbjct: 11 VIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD-HPNIIH 69
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIRQK-GRCGFTENEASRIMRQLVAAVHFMHSRGV 494
L V ++ E ++ G L +RQ G+ FT + ++R + A + ++
Sbjct: 70 LEGVVTKSRPVMIITEFMENGALDSFLRQNDGQ--FTVIQLVGMLRGIAAGMKYLSEMNY 127
Query: 495 VHRDLKPENLLFSDPAGDNI--KVVDFGFACLKRESLHTPCFT--------LQYAAPEVL 544
VHRDL N+L + N+ KV DFG + + P +T +++ APE +
Sbjct: 128 VHRDLAARNILVN----SNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAI 183
Query: 545 RQDKSGYDENCDLWSLGVILVNVL 568
K + D+WS G+++ V+
Sbjct: 184 AYRK--FTSASDVWSYGIVMWEVM 205
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 54.0 bits (130), Expect = 1e-07
Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 39/237 (16%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS------EEINLLRACQGHPN 432
DL+ LG G+ + TG A K++ S E+ ++ C+ P
Sbjct: 6 DLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRS-PY 64
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
IV+ + F +E + + +E + G L DRI +KG +I +V + ++++
Sbjct: 65 IVSFYGAFLNENNICMCMEFMDCGSL-DRIYKKGG-PIPVEILGKIAVAVVEGLTYLYNV 122
Query: 493 -GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL-HTPCFTLQYAAPEVLRQDKSG 550
++HRD+KP N+L + + IK+ DFG + S+ T T Y +PE ++ K
Sbjct: 123 HRIMHRDIKPSNILVN--SRGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGK-- 178
Query: 551 YDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVPFHARSRDDSA 607
Y D+WSLG+ + + G+ PF + DD
Sbjct: 179 ------------------------YTVKSDVWSLGISIIELALGKFPFAFSNIDDDG 211
Score = 31.3 bits (71), Expect = 2.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 265 RILKTEPP-IP-EDLSPDVADFISRLLVKDPRRRLGGGELDAEELKRHPF 312
+I++ PP +P D D+ DF+ L+KDP R +L PF
Sbjct: 224 QIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQL----CAMPPF 269
>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase
adapter protein beta. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) beta
subfamily, pseudokinase domain. The STRAD-beta subfamily
is part of a larger superfamily that includes the
catalytic domains of serine/threonine kinases (STKs),
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The pseudokinase domain shows similarity to
protein kinases but lacks crucial residues for catalytic
activity. STRAD forms a complex with the scaffolding
protein MO25, and the STK, LKB1, resulting in the
activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. STRAD-beta is also referred to as ALS2CR2
(Amyotrophic lateral sclerosis 2 chromosomal region
candidate gene 2 protein), since the human gene encoding
it is located within the juvenile ALS2 critical region
on chromosome 2q33-q34. It is not linked to the
development of ALS2.
Length = 328
Score = 54.2 bits (130), Expect = 2e-07
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 402 TGQEYAVKIISRKIDCSEEINLLRACQG---------HPNIVNLHCVFQDEVHTYLVLEL 452
TG V+I + +C+EE L+A Q HPNI+ VF +++
Sbjct: 24 TGTLVTVRITDLE-NCTEE--HLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPF 80
Query: 453 LKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGD 512
+ G ++ G +E I+ + ++++H G +HR++K ++L S
Sbjct: 81 MAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLV 140
Query: 513 NIKVVDFGFACLKRESLHT-----PCFT---LQYAAPEVLRQDKSGYDENCDLWSLGV 562
++ + ++ ++ P F+ L + +PE+LRQD GY+ D++S+G+
Sbjct: 141 SLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGI 198
Score = 33.0 bits (75), Expect = 0.70
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 918 GFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
G +E I+ + ++++H G +HR++K ++L+SG
Sbjct: 97 GMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISG 136
>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tie
subfamily; catalytic (c) domain. The Tie subfamily
consists of Tie1 and Tie2. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie proteins are
receptor tyr kinases (RTKs) containing an extracellular
region, a transmembrane segment, and an intracellular
catalytic domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2, while no specific
ligand has been identified for Tie1. The binding of
Ang-1 to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. In vivo studies of Tie1 show that it is
critical in vascular development.
Length = 270
Score = 52.4 bits (125), Expect = 4e-07
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 44/223 (19%)
Query: 385 ILGDGSYSVCRRCVEKSTG----------QEYAVKIISRKIDCSEEINLLRACQGHPNIV 434
++G+G++ + K G +EYA K R D + E+ +L HPNI+
Sbjct: 2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHR--DFAGELEVLCKLGHHPNII 59
Query: 435 NLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASR--------IMRQLVA-- 484
NL + + YL +E G LLD +R K R T+ + +QL+
Sbjct: 60 NLLGACEHRGYLYLAIEYAPHGNLLDFLR-KSRVLETDPAFAIANSTASTLSSQQLLHFA 118
Query: 485 -----AVHFMHSRGVVHRDLKPENLLFSDPAGDNI--KVVDFGFA-----CLKRESLHTP 532
+ ++ + +HRDL N+L G+N K+ DFG + +K+ P
Sbjct: 119 ADVARGMDYLSQKQFIHRDLAARNIL----VGENYVAKIADFGLSRGQEVYVKKTMGRLP 174
Query: 533 CFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGY 575
+++ A E L + S Y N D+WS GV+L ++ + Y
Sbjct: 175 ---VRWMAIESL--NYSVYTTNSDVWSYGVLLWEIVSLGGTPY 212
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 52.2 bits (125), Expect = 5e-07
Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS------EEINLLRACQGHPN 432
D+ ILG G+ + T + AVK+I I E+ +L C P
Sbjct: 2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDS-PY 60
Query: 433 IVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
I+ + F E + E + GG L D R+ E+ RI +V + ++ S
Sbjct: 61 IIGFYGAFFVENRISICTEFMDGGSL-DVYRK-----IPEHVLGRIAVAVVKGLTYLWSL 114
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL-HTPCFTLQYAAPEVLRQDKSGY 551
++HRD+KP N+L + +K+ DFG + S+ T T Y APE + ++ Y
Sbjct: 115 KILHRDVKPSNMLVNTRG--QVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQ--Y 170
Query: 552 DENCDLWSLGV 562
+ D+WSLG+
Sbjct: 171 GIHSDVWSLGI 181
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 51.6 bits (124), Expect = 6e-07
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 22/199 (11%)
Query: 385 ILGDGSY-SVCRRCVEKSTGQEYAVKIISRKIDCSEE--INLLRACQ-----GHPNIVNL 436
++G G + VCR ++ +E V I + K S++ ++ L HPNI+ L
Sbjct: 11 VIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRL 70
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
V ++ E ++ G L D+ ++ FT + ++R + + + ++ VH
Sbjct: 71 EGVVTKSRPVMIITEYMENGSL-DKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVH 129
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFT-------LQYAAPEVLRQDKS 549
RDL N+L + + KV DFG + +S +T +++ APE + K
Sbjct: 130 RDLAARNILVN--SNLVCKVSDFGLSRRLEDS--EATYTTKGGKIPIRWTAPEAIAYRK- 184
Query: 550 GYDENCDLWSLGVILVNVL 568
+ D+WS G+++ V+
Sbjct: 185 -FTSASDVWSFGIVMWEVM 202
>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
kinase adapter protein alpha. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) alpha
subfamily, pseudokinase domain. The STRAD alpha
subfamily is part of a larger superfamily that includes
the catalytic domains of serine/threonine kinases
(STKs), protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The pseudokinase domain shows
similarity to protein kinases but lacks crucial residues
for catalytic activity. STRAD forms a complex with the
scaffolding protein MO25, and the STK, LKB1, resulting
in the activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. The structure of STRAD-alpha is available and
shows that this protein binds ATP, has an ordered
activation loop, and adopts a closed conformation
typical of fully active protein kinases. It does not
possess activity due to nonconservative substitutions of
essential catalytic residues. ATP binding enhances the
affinity of STRAD for MO25. The conformation of
STRAD-alpha, stabilized through ATP and MO25, may be
needed to activate LKB1. A mutation which results in a
truncation of a C-terminal part of the human STRAD-alpha
pseudokinase domain and disrupts its association with
LKB1, leads to PMSE (polyhydramnios, megalencephaly,
symptomatic epilepsy) syndrome. Several splice variants
of STRAD-alpha exist which exhibit different effects on
the localization and activation of LKB1.
Length = 327
Score = 52.3 bits (125), Expect = 6e-07
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 34/187 (18%)
Query: 400 KSTGQEYAVKIISRKIDCSEEINLLRACQ-------GHPNIVNLHCVFQDEVHTYLVLEL 452
K TG+ V+ I+ + +E + L+ + HPNIV F + ++V
Sbjct: 22 KPTGEYVTVRRINLEACTNEMVTFLQ-GELHVSKLFNHPNIVPYRATFIADNELWVVTSF 80
Query: 453 LKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPA-- 510
+ G D I G +E + I++ ++ A+ ++H G VHR +K ++L S
Sbjct: 81 MAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKV 140
Query: 511 --------------GDNIKVV-DFGFACLKRESLHTPCFTLQYAAPEVLRQDKSGYDENC 555
G ++VV DF +K L + +PEVL+Q+ GYD
Sbjct: 141 YLSGLRSNLSMINHGQRLRVVHDFPKYSVK---------VLPWLSPEVLQQNLQGYDAKS 191
Query: 556 DLWSLGV 562
D++S+G+
Sbjct: 192 DIYSVGI 198
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 51.6 bits (123), Expect = 9e-07
Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 55/240 (22%)
Query: 374 EQYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCS------EEINLLRAC 427
E D D ++ LG G+ V + K +G A K+I +I + E+ +L C
Sbjct: 1 ELKDDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC 60
Query: 428 QGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVH 487
P IV + F + + +E + GG L D++ + EA RI +++ V
Sbjct: 61 NS-PYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLK---------EAKRIPEEILGKVS 109
Query: 488 FMHSRG---------VVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL-HTPCFTLQ 537
RG ++HRD+KP N+L + IK+ DFG + +S+ ++ T
Sbjct: 110 IAVLRGLAYLREKHQIMHRDVKPSNILVNSRG--EIKLCDFGVSGQLIDSMANSFVGTRS 167
Query: 538 YAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRVP 597
Y +PE R + Y D+WS+G+ L + GR P
Sbjct: 168 YMSPE--------------------------RLQGTHYSVQSDIWSMGLSLVELAIGRYP 201
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 51.3 bits (123), Expect = 9e-07
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 34/197 (17%)
Query: 389 GSYSVCR-RCVEKSTGQEYAVKII-----SRKIDCSEEINLLRACQGHPNIVNLH--CVF 440
GS +CR ++ +TG+ AVK + D EI +L++ Q H NIV C
Sbjct: 18 GSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQ-HDNIVKYKGVCYS 76
Query: 441 QDEVHTYLVLELLKGGELLDR-IRQKGRCGFTENEASRIMR---QLVAAVHFMHSRGVVH 496
+ LV+E L G L D + + R + +++ Q+ + ++ S+ VH
Sbjct: 77 AGRRNLRLVMEYLPYGSLRDYLQKHRERL-----DHRKLLLYASQICKGMEYLGSKRYVH 131
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACL---------KRESLHTPCFTLQYAAPEVLRQD 547
RDL N+L +K+ DFG + RE +P F + APE L +
Sbjct: 132 RDLATRNILVESEN--RVKIGDFGLTKVLPQDKEYYKVREPGESPIF---WYAPESLTES 186
Query: 548 KSGYDENCDLWSLGVIL 564
K + D+WS GV+L
Sbjct: 187 K--FSVASDVWSFGVVL 201
>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
Length = 932
Score = 52.5 bits (126), Expect = 1e-06
Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 64/202 (31%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKG---GELLDRIRQKGRCGFTENEAS------RIMR 480
HP IV ++ + D Y + ++G LL + QK E + I
Sbjct: 61 HPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFH 120
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLL---FSDPAGDNIKVVDFGFACLK------------ 525
++ A + ++HS+GV+HRDLKP+N+L F + + ++D+G A K
Sbjct: 121 KICATIEYVHSKGVLHRDLKPDNILLGLFGE-----VVILDWGAAIFKKLEEEDLLDIDV 175
Query: 526 --RESLHTPCF-------TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYD 576
R ++ T Y APE L +
Sbjct: 176 DERNICYSSMTIPGKIVGTPDYMAPERLLGVPA--------------------------S 209
Query: 577 ENCDLWSLGVILYTMLCGRVPF 598
E+ D+++LGVILY ML P+
Sbjct: 210 ESTDIYALGVILYQMLTLSFPY 231
Score = 45.1 bits (107), Expect = 2e-04
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 926 RIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
I ++ A + ++HS+GV+HRDLKP+N+LL
Sbjct: 117 SIFHKICATIEYVHSKGVLHRDLKPDNILL 146
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 50.5 bits (121), Expect = 1e-06
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 31/178 (17%)
Query: 403 GQEYAVKIISRKIDCS--------EEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLK 454
++ AV + + K S +E ++R HP+IV L V + ++V+EL
Sbjct: 32 NEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFD-HPHIVKLIGVITEN-PVWIVMELAP 89
Query: 455 GGELLDRIRQKGRCGFTENEASRIM----RQLVAAVHFMHSRGVVHRDLKPENLLFSDPA 510
GEL ++ + + QL A+ ++ S+ VHRD+ N+L S P
Sbjct: 90 LGELRSYLQVN-----KYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSP- 143
Query: 511 GDNIKVVDFGFA-CLKRESLHTPCFT---LQYAAPEVL--RQDKSGYDENCDLWSLGV 562
D +K+ DFG + L+ ES + +++ APE + R+ S D+W GV
Sbjct: 144 -DCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSA----SDVWMFGV 196
Score = 31.2 bits (71), Expect = 2.2
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 895 TYLVLELLKGGELLDRIRQKGRCGFTENEASRIM----RQLVAAVHFMHSRGVVHRDLKP 950
++V+EL GEL ++ + + QL A+ ++ S+ VHRD+
Sbjct: 81 VWIVMELAPLGELRSYLQVN-----KYSLDLASLILYSYQLSTALAYLESKRFVHRDIAA 135
Query: 951 ENLLLS 956
N+L+S
Sbjct: 136 RNVLVS 141
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 51.2 bits (122), Expect = 1e-06
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 44/222 (19%)
Query: 379 DLDKAGILGDGSYSVCRRCVEKSTG----------QEYAVKIISRKIDCSEEINLLRACQ 428
D+ ++G+G++ + K G +EYA K R D + E+ +L
Sbjct: 8 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHR--DFAGELEVLCKLG 65
Query: 429 GHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRC-------GFTENEASRIMRQ 481
HPNI+NL + + YL +E G LLD +R K R + AS + Q
Sbjct: 66 HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLR-KSRVLETDPAFAIANSTASTLSSQ 124
Query: 482 LVAA--------VHFMHSRGVVHRDLKPENLLFSDPAGDNI--KVVDFGFA-----CLKR 526
+ + ++ + +HRDL N+L G+N K+ DFG + +K+
Sbjct: 125 QLLHFAADVARGMDYLSQKQFIHRDLAARNIL----VGENYVAKIADFGLSRGQEVYVKK 180
Query: 527 ESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVL 568
P +++ A E L + S Y N D+WS GV+L ++
Sbjct: 181 TMGRLP---VRWMAIESL--NYSVYTTNSDVWSYGVLLWEIV 217
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. Syk is important in B-cell
receptor (BCR) signaling, while Zap-70 is primarily
expressed in T-cells and NK cells, and is a crucial
component in T-cell receptor (TCR) signaling. Syk also
plays a central role in Fc receptor-mediated
phagocytosis in the adaptive immune system. Shark is
exclusively expressed in ectodermally derived epithelia,
and is localized preferentially to the apical surface of
the epithelial cells, it may play a role in a signaling
pathway for epithelial cell polarity.
Length = 257
Score = 50.4 bits (121), Expect = 1e-06
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 407 AVKIISRKIDCSEEINLLRACQ-----GHPNIVNLHCVFQDEVHTYLVLELLKGGELLDR 461
AVK + ++ + + LR HP IV L V + E LV+EL G LL
Sbjct: 27 AVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEP-LMLVMELAPLGPLLKY 85
Query: 462 IRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGF 521
++++ ++ + Q+ + ++ S+ VHRDL N+L + K+ DFG
Sbjct: 86 LKKRRE--IPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNR--HQAKISDFGM 141
Query: 522 A-CLKRESLHTPCFT-----LQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+ L S + T L++ APE + K + D+WS GV L
Sbjct: 142 SRALGAGSDYYRATTAGRWPLKWYAPECINYGK--FSSKSDVWSYGVTL 188
Score = 38.1 bits (89), Expect = 0.015
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LV+EL G LL ++++ ++ + Q+ + ++ S+ VHRDL N+LL
Sbjct: 72 LVMELAPLGPLLKYLKKRRE--IPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLL 128
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 50.3 bits (120), Expect = 2e-06
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 32/205 (15%)
Query: 386 LGDGSY---SVCRRCVE-KSTGQEYAVKII------SRKIDCSEEINLLRACQGHPNIVN 435
LG+G + +CR E +TG++ AVK + + D +EI +LR H NIV
Sbjct: 12 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLY-HENIVK 70
Query: 436 LHCVFQDEVHT--YLVLELLKGGELLDRI-RQKGRCGFTENEASRIMRQLVAAVHFMHSR 492
+ ++ L++E L G L + + R K + + + Q+ + ++ SR
Sbjct: 71 YKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINL--KQQLKYAVQICKGMDYLGSR 128
Query: 493 GVVHRDLKPENLLFSDPAGDNIKVVDFGFA---------CLKRESLHTPCFTLQYAAPEV 543
VHRDL N+L +K+ DFG ++ L +P F + APE
Sbjct: 129 QYVHRDLAARNVLVESE--HQVKIGDFGLTKAIETDKEYYTVKDDLDSPVF---WYAPEC 183
Query: 544 LRQDKSGYDENCDLWSLGVILVNVL 568
L Q K + D+WS GV L +L
Sbjct: 184 LIQSK--FYIASDVWSFGVTLYELL 206
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 49.9 bits (119), Expect = 2e-06
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
HPNI++L V +V E ++ G L D +K FT + ++R + + + ++
Sbjct: 64 HPNIIHLEGVVTKSKPVMIVTEYMENGSL-DAFLRKHDGQFTVIQLVGMLRGIASGMKYL 122
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNI--KVVDFGFACLKR---ESLHTPC---FTLQYAAP 541
G VHRDL N+L + N+ KV DFG + + E+ +T +++ AP
Sbjct: 123 SDMGYVHRDLAARNILVN----SNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAP 178
Query: 542 EVLRQDKSGYDENCDLWSLGVILVNVL 568
E + K + D+WS G+++ V+
Sbjct: 179 EAIAYRK--FTSASDVWSYGIVMWEVM 203
Score = 31.4 bits (71), Expect = 2.1
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
+V E ++ G L D +K FT + ++R + + + ++ G VHRDL N+L
Sbjct: 82 IVTEYMENGSL-DAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNIL-- 138
Query: 957 GISGNLI 963
++ NL+
Sbjct: 139 -VNSNLV 144
>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine
Kinase, HER4. Protein Tyrosine Kinase (PTK) family;
HER4 (ErbB4); catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER4 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands that bind HER4 fall into two groups,
the neuregulins (or heregulins) and some EGFR (HER1)
ligands including betacellulin, HBEGF, and epiregulin.
All four neuregulins (NRG1-4) interact with HER4. Upon
ligand binding, HER4 forms homo- or heterodimers with
other HER proteins. HER4 is essential in embryonic
development. It is implicated in mammary gland, cardiac,
and neural development. As a postsynaptic receptor of
NRG1, HER4 plays an important role in synaptic
plasticity and maturation. The impairment of NRG1/HER4
signaling may contribute to schizophrenia.
Length = 303
Score = 50.5 bits (120), Expect = 2e-06
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 28/218 (12%)
Query: 377 DMDLDKAGILGDGSYSVCRRCVEKSTGQEY----AVKIISRKIDCSEEIN-----LLRAC 427
+ +L + +LG G++ + + G+ A+KI++ + L+ A
Sbjct: 6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMAS 65
Query: 428 QGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMR----QLV 483
HP++V L V LV +L+ G LLD + + +N S+++ Q+
Sbjct: 66 MDHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLDYVHEH-----KDNIGSQLLLNWCVQIA 119
Query: 484 AAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACL-----KRESLHTPCFTLQY 538
+ ++ R +VHRDL N+L P +++K+ DFG A L K + +++
Sbjct: 120 KGMMYLEERRLVHRDLAARNVLVKSP--NHVKITDFGLARLLEGDEKEYNADGGKMPIKW 177
Query: 539 AAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYD 576
A E + K + D+WS GV + ++ YD
Sbjct: 178 MALECIHYRK--FTHQSDVWSYGVTIWELMTFGGKPYD 213
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 50.0 bits (119), Expect = 3e-06
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 44/194 (22%)
Query: 407 AVKIISRKIDCSE------EINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLD 460
AVK++ SE E NLL+ HP+++ L+ + L++E K G L
Sbjct: 34 AVKMLKENASSSELRDLLSEFNLLKQVN-HPHVIKLYGACSQDGPLLLIVEYAKYGSLRS 92
Query: 461 RIR--QKGRCGFTENEASRIMR--------------------QLVAAVHFMHSRGVVHRD 498
+R +K + ++ +R Q+ + ++ +VHRD
Sbjct: 93 FLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRD 152
Query: 499 LKPENLLFSDPAGDNIKVVDFGF--------ACLKRESLHTPCFTLQYAAPEVLRQDKSG 550
L N+L ++ G +K+ DFG + +KR P +++ A E L
Sbjct: 153 LAARNVLVAE--GRKMKISDFGLSRDVYEEDSYVKRSKGRIP---VKWMAIESLFDHI-- 205
Query: 551 YDENCDLWSLGVIL 564
Y D+WS GV+L
Sbjct: 206 YTTQSDVWSFGVLL 219
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine
Kinases, Fibroblast Growth Factor Receptors. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor (FGFR) subfamily; catalytic (c) domain. The
FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K).PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with three
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
FGFRs to their ligands, the FGFs, and to heparin/heparan
sulfate (HS) results in the formation of a ternary
complex, which leads to receptor dimerization and
activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on
the cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 50.1 bits (120), Expect = 3e-06
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 39/188 (20%)
Query: 407 AVKIISRKIDCSE--------EINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGEL 458
AVK++ K D +E E+ +++ H NI+NL V E Y+V+E G L
Sbjct: 46 AVKML--KDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNL 103
Query: 459 LDRIRQKGRCGFTEN-EASRIMR-------------QLVAAVHFMHSRGVVHRDLKPENL 504
D +R + G + + R Q+ + F+ S+ +HRDL N+
Sbjct: 104 RDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNV 163
Query: 505 LFSDPAGDNIKVVDFGFA----CL----KRESLHTPCFTLQYAAPEVLRQDKSGYDENCD 556
L ++ +K+ DFG A + K + P +++ APE L Y D
Sbjct: 164 LVTE--DHVMKIADFGLARDIHHIDYYRKTTNGRLP---VKWMAPEAL--FDRVYTHQSD 216
Query: 557 LWSLGVIL 564
+WS GV+L
Sbjct: 217 VWSFGVLL 224
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 48.9 bits (116), Expect = 9e-06
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 473 NEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA 522
N +MRQ++ + +H G+VHRD+KPENLL + +K++DFG A
Sbjct: 309 NVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVT--VDGQVKIIDFGAA 356
Score = 42.8 bits (100), Expect = 7e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 922 NEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
N +MRQ++ + +H G+VHRD+KPENLL++
Sbjct: 309 NVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVT 343
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 49.1 bits (117), Expect = 1e-05
Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 24/214 (11%)
Query: 363 FDKIFKGSLFFEQYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSE-EI 421
FD S+ L + ++ G + G ++ VK I+ EI
Sbjct: 675 FDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEI 734
Query: 422 NLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQ 481
+ Q HPNIV L + + E YL+ E ++G L + +R + +I
Sbjct: 735 ADMGKLQ-HPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR-----NLSWERRRKIAIG 788
Query: 482 LVAAVHFMH---SRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESL---HTPCFT 535
+ A+ F+H S VV +L PE ++ I D L L T CF
Sbjct: 789 IAKALRFLHCRCSPAVVVGNLSPEKII--------IDGKDEPHLRLSLPGLLCTDTKCFI 840
Query: 536 LQ-YAAPEVLRQDKSGYDENCDLWSLGVILVNVL 568
Y APE ++ E D++ G+IL+ +L
Sbjct: 841 SSAYVAPET--RETKDITEKSDIYGFGLILIELL 872
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 48.8 bits (116), Expect = 1e-05
Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 54/237 (22%)
Query: 385 ILGDGSYSVCRRCVEKSTGQEYAVKIISRKI-----DCSEEINLL-RACQGHPN----IV 434
+LG+G++ ++ + AVKI+ R + D EI + + Q P ++
Sbjct: 136 LLGEGTFGKVVEAWDRKRKEYCAVKIV-RNVPKYTRDAKIEIQFMEKVRQADPADRFPLM 194
Query: 435 NLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSR-G 493
+ FQ+E ++ G LLD I + G F+ ++I+ Q A+ + H+
Sbjct: 195 KIQRYFQNETGHMCIVMPKYGPCLLDWIMKHG--PFSHRHLAQIIFQTGVALDYFHTELH 252
Query: 494 VVHRDLKPENLLFS------DPAGDN--------IKVVDFGFACLKRESLHTPCFTLQYA 539
++H DLKPEN+L DP + +++ D G C +R S T Y
Sbjct: 253 LMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYR 312
Query: 540 APEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWSLGVILYTMLCGRV 596
+PEV+ LG+ G+ + D+WS+G I+Y + G++
Sbjct: 313 SPEVV---------------LGL-----------GWMYSTDMWSMGCIIYELYTGKL 343
Score = 38.8 bits (90), Expect = 0.012
Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 34/282 (12%)
Query: 686 KNVSNDNSRSFSSTSSSLSSSSSGTSSLKTPCSSTQPSVPSKPVKRINKDASSGTVFDFA 745
+S + + TS + ++ SG S +ST + + N SG+ D
Sbjct: 6 AGLSAARAGLYQYTSGAPVNALSGNSPKANNSASTGQT----TSRSTNSARRSGSKRDRE 61
Query: 746 EARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQLSPVRKKKKPDLTLPASNKAESE-QLHL 804
A + + S ++ + + +T ++++P KKKK LP ++ E + L
Sbjct: 62 TATSTDSGRTKSHEGAATTKQATTTPTTN-VEVAPPPKKKKVTYALPNQSREEGHFYVVL 120
Query: 805 AEPSTLAGTKRKHKPDTSSQCSKSLPAT-HSTPARKKKKADRQPAKQEEK------QPVP 857
E D S+Q K L T + + DR K++E + VP
Sbjct: 121 GE-----------DIDVSTQRFKILSLLGEGTFGKVVEAWDR---KRKEYCAVKIVRNVP 166
Query: 858 QTTPPTDLVTLFEEQLLGPITRARRRTFVNRSRY--NVHTYLVLELLKGGE-LLDRIRQK 914
+ T + F E++ A R + RY N ++ + + K G LLD I +
Sbjct: 167 KYTRDAKIEIQFMEKVRQA-DPADRFPLMKIQRYFQNETGHMCIVMPKYGPCLLDWIMKH 225
Query: 915 GRCGFTENEASRIMRQLVAAVHFMHSR-GVVHRDLKPENLLL 955
G F+ ++I+ Q A+ + H+ ++H DLKPEN+L+
Sbjct: 226 G--PFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILM 265
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 47.8 bits (114), Expect = 1e-05
Identities = 54/224 (24%), Positives = 83/224 (37%), Gaps = 47/224 (20%)
Query: 363 FDKIFKGSLFFEQYDMDLDKAGILGDGSYSVCRRCVEKSTGQEYAVKIISRKIDCSEEIN 422
F K++KG L G K+ + K+ + + +E
Sbjct: 18 FGKVYKGELT--------------GPNERLSATSVAIKTLKENAEPKV---QQEFRQEAE 60
Query: 423 LLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGEL---LDRIRQKGRCGFTENEAS--- 476
L+ Q HPNIV L V E T ++ E L G+L L R G + +
Sbjct: 61 LMSDLQ-HPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKS 119
Query: 477 --------RIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRE- 527
I Q+ A + ++ S VHRDL N L + G +K+ DFG L R+
Sbjct: 120 SLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGE--GLTVKISDFG---LSRDI 174
Query: 528 -------SLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+++ PE + K + D+WS GV+L
Sbjct: 175 YSADYYRVQSKSLLPVRWMPPEAILYGK--FTTESDIWSFGVVL 216
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 1. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 1 (FGFR1); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR1 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Alternative splicing of
FGFR1 transcripts produces a variety of isoforms, which
are differentially expressed in cells. FGFR1 binds the
ligands, FGF1 and FGF2, with high affinity and has also
been reported to bind FGF4, FGF6, and FGF9. FGFR1
signaling is critical in the control of cell migration
during embryo development. It promotes cell
proliferation in fibroblasts. Nuclear FGFR1 plays a role
in the regulation of transcription. Mutations,
insertions or deletions of FGFR1 have been identified in
patients with Kallman's syndrome (KS), an inherited
disorder characterized by hypogonadotropic hypogonadism
and loss of olfaction. Aberrant FGFR1 expression has
been found in some human cancers including 8P11
myeloproliferative syndrome (EMS), breast cancer, and
pancreatic adenocarcinoma.
Length = 307
Score = 48.1 bits (114), Expect = 1e-05
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 31/183 (16%)
Query: 416 DCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGF----- 470
D E+ +++ H NI+NL + Y+++E G L + +R + G
Sbjct: 69 DLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYN 128
Query: 471 -----TENEASRIM----RQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNI-KVVDFG 520
E + + + Q+ + ++ S+ +HRDL N+L ++ DN+ K+ DFG
Sbjct: 129 PTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTE---DNVMKIADFG 185
Query: 521 FACLKRESLHTPCFT--------LQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDK 572
A R+ H + +++ APE L D+ Y D+WS GV+L +
Sbjct: 186 LA---RDIHHIDYYKKTTNGRLPVKWMAPEALF-DRI-YTHQSDVWSFGVLLWEIFTLGG 240
Query: 573 SGY 575
S Y
Sbjct: 241 SPY 243
>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA10
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). EphA10,
which contains an inactive tyr kinase domain, may
function to attenuate signals of co-clustered active
receptors. EphA10 is mainly expressed in the testis.
Ephrin/EphR interaction results in cell-cell repulsion
or adhesion, making it important in neural development
and plasticity, cell morphogenesis, cell-fate
determination, embryonic development, tissue patterning,
and angiogenesis.
Length = 266
Score = 47.6 bits (113), Expect = 1e-05
Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 21/198 (10%)
Query: 385 ILGDGSY-SVCRRCVEKSTGQEYAVKIISRKIDCSEEIN---LLRACQ----GHPNIVNL 436
ILG G + +CR C++ + +E V I + + CS++ L A H NIV L
Sbjct: 12 ILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRL 71
Query: 437 HCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVH 496
V +V E + G LD +K + ++ L + + ++ G VH
Sbjct: 72 EGVITRGNTMMIVTEYMSNG-ALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVH 130
Query: 497 RDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTLQ------YAAPEVLRQDKSG 550
+ L +L + I GF L+ + T+ +AAPE ++
Sbjct: 131 KGLAAHKVLVNSDLVCKIS----GFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHH-- 184
Query: 551 YDENCDLWSLGVILVNVL 568
+ D+WS G+++ V+
Sbjct: 185 FSSASDVWSFGIVMWEVM 202
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. VEGFR3
preferentially binds the ligands VEGFC and VEGFD. VEGFR3
is essential for lymphatic endothelial cell (EC)
development and function. It has been shown to regulate
adaptive immunity during corneal transplantation. VEGFR3
is upregulated on blood vascular ECs in pathological
conditions such as vascular tumors and the periphery of
solid tumors. It plays a role in cancer progression and
lymph node metastasis. Missense mutations in the VEGFR3
gene are associated with primary human lymphedema.
Length = 338
Score = 47.3 bits (112), Expect = 2e-05
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 15/103 (14%)
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFT----- 535
Q+ + F+ SR +HRDL N+L S+ + +K+ DFG A R+ P +
Sbjct: 182 QVARGMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLA---RDIYKDPDYVRKGSA 236
Query: 536 ---LQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGY 575
L++ APE + DK Y D+WS GV+L + S Y
Sbjct: 237 RLPLKWMAPESIF-DKV-YTTQSDVWSFGVLLWEIFSLGASPY 277
Score = 31.9 bits (72), Expect = 1.8
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLLSGISGNLIKI 965
Q+ + F+ SR +HRDL N+LLS N++KI
Sbjct: 182 QVARGMEFLASRKCIHRDLAARNILLS--ENNVVKI 215
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 47.0 bits (111), Expect = 2e-05
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 32/182 (17%)
Query: 412 SRKIDCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGR---- 467
+RK D E LL Q H +IV + V + +V E +K G+L +R G
Sbjct: 50 ARK-DFHREAELLTNLQ-HEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVL 107
Query: 468 -------CGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDN--IKVVD 518
T+++ I +Q+ A + ++ S+ VHRDL N L G+N +K+ D
Sbjct: 108 MAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCL----VGENLLVKIGD 163
Query: 519 FGFACLKRESLHTPCF--------TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQ 570
FG + R+ T + +++ PE + K + D+WSLGV+L +
Sbjct: 164 FG---MSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRK--FTTESDVWSLGVVLWEIFTY 218
Query: 571 DK 572
K
Sbjct: 219 GK 220
Score = 30.0 bits (67), Expect = 6.2
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 897 LVLELLKGGELLDRIRQKGR-----------CGFTENEASRIMRQLVAAVHFMHSRGVVH 945
+V E +K G+L +R G T+++ I +Q+ A + ++ S+ VH
Sbjct: 84 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVH 143
Query: 946 RDLKPENLLL 955
RDL N L+
Sbjct: 144 RDLATRNCLV 153
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 2.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart,
and respiratory dysfunction. Mutations in human Ror2
result in two different bone development genetic
disorders, recessive Robinow syndrome and brachydactyly
type B. Ror2 is also implicated in neural development.
Length = 283
Score = 46.6 bits (110), Expect = 3e-05
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 28/189 (14%)
Query: 404 QEYAVKIISRKIDCS--EEIN---LLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGEL 458
Q A+K + K + EE ++R+ HPNIV L V E ++ +L
Sbjct: 36 QAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDL 95
Query: 459 LDRIRQKG---RCGFTENEAS-----------RIMRQLVAAVHFMHSRGVVHRDLKPENL 504
+ + + G T+++ + I+ Q+ A + F+ S VVH+DL N+
Sbjct: 96 HEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNV 155
Query: 505 LFSDPAGDNIKVVDFG-----FACLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWS 559
L D N+K+ D G +A + + +++ +PE + K D D+WS
Sbjct: 156 LVFDKL--NVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDS--DIWS 211
Query: 560 LGVILVNVL 568
GV+L V
Sbjct: 212 YGVVLWEVF 220
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 46.3 bits (110), Expect = 3e-05
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 38/186 (20%)
Query: 407 AVKII------SRKIDCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLD 460
AVK + + D E LL Q H NIV + V + +V E ++ G+L
Sbjct: 39 AVKTLKETASNDARKDFEREAELLTNFQ-HENIVKFYGVCTEGDPPIMVFEYMEHGDLNK 97
Query: 461 RIRQKGR-----------CG-FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSD 508
+R G G T ++ +I Q+ + + ++ S+ VHRDL N L
Sbjct: 98 FLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCL--- 154
Query: 509 PAGDN--IKVVDFGFACLKRESLHTPCFT--------LQYAAPEVLRQDKSGYDENCDLW 558
G + +K+ DFG + R+ T + +++ PE + K + D+W
Sbjct: 155 -VGYDLVVKIGDFG---MSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRK--FTTESDVW 208
Query: 559 SLGVIL 564
S GV+L
Sbjct: 209 SFGVVL 214
Score = 30.5 bits (69), Expect = 4.4
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 896 YLVLELLKGGELLDRIRQKGR-----------CG-FTENEASRIMRQLVAAVHFMHSRGV 943
+V E ++ G+L +R G G T ++ +I Q+ + + ++ S+
Sbjct: 84 IMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHF 143
Query: 944 VHRDLKPENLL 954
VHRDL N L
Sbjct: 144 VHRDLATRNCL 154
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 46.6 bits (110), Expect = 4e-05
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 15/103 (14%)
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFT----- 535
Q+ + F+ SR +HRDL N+L S+ + +K+ DFG A R+ P +
Sbjct: 187 QVAKGMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLA---RDIYKDPDYVRKGDA 241
Query: 536 ---LQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGY 575
L++ APE + D+ Y D+WS GV+L + S Y
Sbjct: 242 RLPLKWMAPETIF-DRV-YTIQSDVWSFGVLLWEIFSLGASPY 282
Score = 31.9 bits (72), Expect = 1.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLLSGISGNLIKI 965
Q+ + F+ SR +HRDL N+LLS N++KI
Sbjct: 187 QVAKGMEFLASRKCIHRDLAARNILLS--ENNVVKI 220
Score = 29.6 bits (66), Expect = 7.7
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 660 AFHQAQKEGFRLQDVTSAKLAQRRKNK-NVSNDNSRSFSSTSSSLSSSSSGTSSLKTPCS 718
+ ++++ F A+ Q + ++S D R S +SS SS+SSG K+
Sbjct: 101 NYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSD 160
Query: 719 STQPSVPSKPVKRINKDASSGTVFDFAEARVQEYLSS 755
+ + + + + F A+ E+L+S
Sbjct: 161 VEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLAS 197
>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine
Kinase, Apoptosis-associated tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Aatyk2 is
a member of the Aatyk subfamily of proteins, which are
receptor kinases containing a transmembrane segment and
a long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk2 is also called lemur tyrosine kinase 2
(Lmtk2) or brain-enriched kinase (Brek). It is expressed
at high levels in early postnatal brain, and has been
shown to play a role in nerve growth factor (NGF)
signaling. Studies with knockout mice reveal that Aatyk2
is essential for late stage spermatogenesis. Although it
is classified as a tyr kinase based on sequence
similarity and the phylogenetic tree, Aatyk2 has been
characterized as a serine/threonine kinase.
Length = 268
Score = 46.0 bits (109), Expect = 4e-05
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 430 HPNIVNLHCVFQ--DEVHTYLVLELLKGGELLDRIRQKG--RCGFTENEASRIMRQLVAA 485
HPNI L C+ Q + + LV E + G+L + Q+ R R+ ++ A
Sbjct: 54 HPNI--LQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAG 111
Query: 486 VHFMHSRGVVHRDLKPENLLFSDPAGD-NIKVVDF--GFACLKRESLHTP---CFTLQYA 539
V MH +H DL N + D +KV D+ G + K + + T C L++
Sbjct: 112 VTHMHKHNFLHSDLALRNCFLT---SDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWL 168
Query: 540 APEVL--RQDK---SGYDENCDLWSLGVIL 564
APE++ + + ++W+LGV L
Sbjct: 169 APELVGEFHGGLITAEQTKPSNVWALGVTL 198
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 45.3 bits (107), Expect = 6e-05
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFM 489
H NI+ L V ++ E ++ G L D+ + F+ + ++R + A + ++
Sbjct: 65 HHNIIRLEGVVTKFKPAMIITEYMENGAL-DKYLRDHDGEFSSYQLVGMLRGIAAGMKYL 123
Query: 490 HSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKR---ESLHTPC---FTLQYAAPEV 543
VHRDL N+L + KV DFG + + E +T +++ APE
Sbjct: 124 SDMNYVHRDLAARNILVNSNL--ECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEA 181
Query: 544 LRQDKSGYDENCDLWSLGVILVNVL 568
+ K + D+WS G+++ V+
Sbjct: 182 IAYRK--FTSASDVWSFGIVMWEVM 204
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 4. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 4 (FGFR4); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR4 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Unlike other FGFRs,
there is only one splice form of FGFR4. It binds FGF1,
FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective
ligand for FGFR4. Although disruption of FGFR4 in mice
causes no obvious phenotype, in vivo inhibition of FGFR4
in cultured skeletal muscle cells resulted in an arrest
of muscle progenitor differentiation. FGF6 and FGFR4 are
uniquely expressed in myofibers and satellite cells.
FGF6/FGFR4 signaling appears to play a key role in the
regulation of muscle regeneration. A polymorphism in
FGFR4 is found in head and neck squamous cell carcinoma.
Length = 314
Score = 45.7 bits (108), Expect = 7e-05
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 31/183 (16%)
Query: 416 DCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTEN-- 473
D E+ L++ H NI+NL V E Y+++E G L + +R + G
Sbjct: 63 DLISEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFD 122
Query: 474 -----EASRIMRQLVAAVH-------FMHSRGVVHRDLKPENLLFSDPAGDNI-KVVDFG 520
E + LV+ + ++ SR +HRDL N+L ++ DN+ K+ DFG
Sbjct: 123 ITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTE---DNVMKIADFG 179
Query: 521 FACLKRESLHTPCFT--------LQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDK 572
A R + +++ APE L D+ Y D+WS G+++ +
Sbjct: 180 LA---RGVHDIDYYKKTSNGRLPVKWMAPEALF-DRV-YTHQSDVWSFGILMWEIFTLGG 234
Query: 573 SGY 575
S Y
Sbjct: 235 SPY 237
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 45.8 bits (108), Expect = 7e-05
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 456 GELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIK 515
E+ + + G G T + Q+ + F+ S+ VHRDL N+L + G +K
Sbjct: 220 SEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQ--GKIVK 277
Query: 516 VVDFGFACLKRESLHTPCFT--------LQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+ DFG A R+ +H + +++ APE + + Y D+WS G++L
Sbjct: 278 ICDFGLA---RDIMHDSNYVSKGSTFLPVKWMAPESIFDNL--YTTLSDVWSYGILL 329
Score = 34.2 bits (78), Expect = 0.30
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 905 GELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLSGISGNLIK 964
E+ + + G G T + Q+ + F+ S+ VHRDL N+LL+ G ++K
Sbjct: 220 SEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLA--QGKIVK 277
Query: 965 I 965
I
Sbjct: 278 I 278
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 3. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 3 (FGFR3); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR3 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Many FGFR3 splice
variants have been reported with the IIIb and IIIc
isoforms being the predominant forms. FGFR3 IIIc is the
isoform expressed in chondrocytes, the cells affected in
dwarfism, while IIIb is expressed in epithelial cells.
FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and
FGF23. It is a negative regulator of long bone growth.
In the cochlear duct and in the lens, FGFR3 is involved
in differentiation while it appears to have a role in
cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal
disorders including several forms of dwarfism. Some
missense mutations are associated with multiple myeloma
and carcinomas of the bladder and cervix. Overexpression
of FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 45.8 bits (108), Expect = 8e-05
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 33/184 (17%)
Query: 416 DCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCG------ 469
D E+ +++ H NI+NL + Y+++E G L + +R + G
Sbjct: 63 DLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFD 122
Query: 470 --------FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNI-KVVDFG 520
T + Q+ + ++ S+ +HRDL N+L ++ DN+ K+ DFG
Sbjct: 123 TCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTE---DNVMKIADFG 179
Query: 521 FACLKRESLHTPCF---------TLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQD 571
A +H + +++ APE L D+ Y D+WS GV+L +
Sbjct: 180 LA----RDVHNIDYYKKTTNGRLPVKWMAPEALF-DRV-YTHQSDVWSFGVLLWEIFTLG 233
Query: 572 KSGY 575
S Y
Sbjct: 234 GSPY 237
>gnl|CDD|215917 pfam00433, Pkinase_C, Protein kinase C terminal domain.
Length = 47
Score = 40.3 bits (95), Expect = 9e-05
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 333 KISNELDVSNFSDEFTKMIPADSPAIVPPNF---DKIFKG 369
K+ + D SNF EFT P SP F+G
Sbjct: 1 KVKSPTDTSNFDPEFTSEPPKLSPPDSEVLSSIDQLEFRG 40
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 44.5 bits (105), Expect = 2e-04
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 15/103 (14%)
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFT----- 535
Q+ + F+ SR +HRDL N+L S+ + +K+ DFG A R+ P +
Sbjct: 181 QVARGMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLA---RDIYKDPDYVRKGDA 235
Query: 536 ---LQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGY 575
L++ APE + DK Y D+WS GV+L + S Y
Sbjct: 236 RLPLKWMAPESIF-DKV-YTTQSDVWSFGVLLWEIFSLGASPY 276
Score = 31.7 bits (72), Expect = 1.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLLSGISGNLIKI 965
Q+ + F+ SR +HRDL N+LLS N++KI
Sbjct: 181 QVARGMEFLASRKCIHRDLAARNILLS--ENNVVKI 214
>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine
Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family;
Tyro3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyro3 (or Sky) is a
member of the Axl subfamily, which is composed of
receptor tyr kinases (RTKs) containing an extracellular
ligand-binding region with two immunoglobulin-like
domains followed by two fibronectin type III repeats, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, Gas6 and protein S,
leads to receptor dimerization, autophosphorylation,
activation, and intracellular signaling. Tyro3 is
predominantly expressed in the central nervous system
and the brain, and functions as a neurotrophic factor.
It is also expressed in osteoclasts and has a role in
bone resorption.
Length = 273
Score = 44.1 bits (104), Expect = 2e-04
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 36/228 (15%)
Query: 385 ILGDGSYSVCRRC---VEKSTGQEYAVKIISRKIDCSEEI-NLLR--ACQ---GHPNI-- 433
+LG G + R E + Q+ AVK++ I S +I LR AC HPN+
Sbjct: 6 MLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIK 65
Query: 434 ---VNLHCVFQDEVHTYLV-LELLKGGEL-----LDRIRQKGRCGFTENEAS--RIMRQL 482
V+L + + +V L +K G+L + RI G FT + R M +
Sbjct: 66 LIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRI---GEEPFTLPLQTLVRFMIDI 122
Query: 483 VAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA--CLKRESLHTPCFT---LQ 537
+ + ++ S+ +HRDL N + ++ + V DFG + + C + ++
Sbjct: 123 ASGMEYLSSKNFIHRDLAARNCMLNENM--TVCVADFGLSKKIYSGDYYRQGCASKLPVK 180
Query: 538 YAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYD--ENCDLWS 583
+ A E L + Y + D+W+ GV + ++ + ++ Y EN ++++
Sbjct: 181 WLALESLADNV--YTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYN 226
Score = 29.9 bits (67), Expect = 5.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 123 ILGDGSYSVCRRC---VEKSTGQEYAVKIISRKIDCSEEI-NLLR--ACQ---GHPNICR 173
+LG G + R E + Q+ AVK++ I S +I LR AC HPN+ +
Sbjct: 6 MLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIK 65
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 44.2 bits (104), Expect = 2e-04
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 18/138 (13%)
Query: 448 LVLELLKGGELLDRIRQKGRCGFTENEASRIMR----QLVAAVHFMHSRGVVHRDLKPEN 503
L+ +L+ G LLD +R+ +N S+ + Q+ ++++ R +VHRDL N
Sbjct: 85 LITQLMPFGCLLDYVREH-----KDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARN 139
Query: 504 LLFSDPAGDNIKVVDFGFACL-----KRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLW 558
+L P ++K+ DFG A L K +++ A E + Y D+W
Sbjct: 140 VLVKTP--QHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILH--RIYTHQSDVW 195
Query: 559 SLGVILVNVLRQDKSGYD 576
S GV + ++ YD
Sbjct: 196 SYGVTVWELMTFGSKPYD 213
Score = 32.3 bits (73), Expect = 1.1
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMR----QLVAAVHFMHSRGVVHRDLKPEN 952
L+ +L+ G LLD +R+ +N S+ + Q+ ++++ R +VHRDL N
Sbjct: 85 LITQLMPFGCLLDYVREH-----KDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARN 139
Query: 953 LLLSG 957
+L+
Sbjct: 140 VLVKT 144
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 2. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 2 (FGFR2); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR2 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. There are many splice
variants of FGFR2 which show differential expression and
binding to FGF ligands. Disruption of either FGFR2 or
FGFR2b is lethal in mice, due to defects in the placenta
or severe impairment of tissue development including
lung, limb, and thyroid, respectively. Disruption of
FGFR2c in mice results in defective bone and skull
development. Genetic alterations of FGFR2 are associated
with many human skeletal disorders including Apert
syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and
Pfeiffer syndrome.
Length = 304
Score = 44.2 bits (104), Expect = 2e-04
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 416 DCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCG------ 469
D E+ +++ H NI+NL + Y+++E G L + +R + G
Sbjct: 66 DLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYD 125
Query: 470 --------FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGF 521
T + Q+ + ++ S+ +HRDL N+L ++ + +K+ DFG
Sbjct: 126 IARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTE--NNVMKIADFGL 183
Query: 522 A--------CLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKS 573
A K + P +++ APE L D+ Y D+WS GV++ + S
Sbjct: 184 ARDVNNIDYYKKTTNGRLP---VKWMAPEALF-DRV-YTHQSDVWSFGVLMWEIFTLGGS 238
Query: 574 GY 575
Y
Sbjct: 239 PY 240
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 43.6 bits (103), Expect = 2e-04
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 407 AVKIISRKIDCSEEINLLRACQG-------HPNIVNLHCV-FQDEVHTYLVLELLKGGEL 458
AVK ++R D E L+ +G HPN+++L + E +VL +K G+L
Sbjct: 27 AVKSLNRITDLEEVEQFLK--EGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDL 84
Query: 459 LDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVD 518
+ IR + T + Q+ + ++ S+ VHRDL N + + +KV D
Sbjct: 85 RNFIRSETH-NPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESF--TVKVAD 141
Query: 519 FGFA--CLKRE--SLHTPC---FTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQD 571
FG A +E S+H +++ A E L+ K + D+WS GV+L ++ +
Sbjct: 142 FGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQK--FTTKSDVWSFGVLLWELMTRG 199
Query: 572 KSGY 575
Y
Sbjct: 200 APPY 203
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 44.8 bits (105), Expect = 2e-04
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 28/194 (14%)
Query: 692 NSRSFSSTSSSLSSSSSGTSSLKTPCSSTQPSVP-------SKPVKRINKDASSGTVFDF 744
+S S SS+SSS SS SS S TP S PS P S+ +R +D S F +
Sbjct: 1817 SSSSSSSSSSSSSSPSSRPSRSATPSLSPSPSPPRRAPVDRSRSGRRRERDRPSANPFRW 1876
Query: 745 AEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQLSPVRKK---------KKPDLTLPASN 795
A + S + S GT+ P + + L+ P R + P + P +
Sbjct: 1877 APRQ-------RSRADHSPDGTA-PGDAPLNLEDGPGRGRPIWTPSSATTLPSRSGPEDS 1928
Query: 796 KAESEQLHLAEPSTLA----GTKRKHKPDTSSQCSKSLPATHSTPARKKKKADRQPAKQE 851
E+E A P+ LA T R + S S P +P K + R+P+ ++
Sbjct: 1929 VDETETEDSAPPARLAPSPLETSRAEDSEDSEYPEYSNPRLGKSPPALKSREARRPSSKQ 1988
Query: 852 EKQPVPQTTPPTDL 865
++P TD+
Sbjct: 1989 PRRPSSGKNGHTDV 2002
Score = 34.1 bits (77), Expect = 0.55
Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 18/159 (11%)
Query: 726 SKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQLSPVRKKK 785
S PV+R + A+ G + + R SS SSSSSS + P S+T L SP ++
Sbjct: 1793 SVPVRRRSGAANCGGRWMISAGRSSSSSSSSSSSSSSSPSSRPSRSATPSLSPSPSPPRR 1852
Query: 786 KPDLTLPASNKAESEQLHLAEPSTLAGTKRK---HKPDTSSQCSKSL------------- 829
P + S + A P A +R H PD ++ L
Sbjct: 1853 AP-VDRSRSGRRRERDRPSANPFRWAPRQRSRADHSPDGTAPGDAPLNLEDGPGRGRPIW 1911
Query: 830 -PATHSTPARKKKKADRQPAKQEEKQPVPQTTPPTDLVT 867
P++ +T + D + E P P+ L T
Sbjct: 1912 TPSSATTLPSRSGPEDSVDETETEDSAPPARLAPSPLET 1950
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 43.3 bits (102), Expect = 3e-04
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 35/163 (21%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQK--------------------GRCG 469
HPNIV L V L+ E + G+L + +R +
Sbjct: 67 HPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLP 126
Query: 470 FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA------- 522
+ E I +Q+ A + ++ R VHRDL N L + +K+ DFG +
Sbjct: 127 LSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENM--VVKIADFGLSRNIYSAD 184
Query: 523 -CLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
E+ P +++ PE + ++ Y D+W+ GV+L
Sbjct: 185 YYKASENDAIP---IRWMPPESIFYNR--YTTESDVWAYGVVL 222
Score = 32.1 bits (73), Expect = 1.1
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 868 LFEEQLLGPITRARRRTFVNRSRYNVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRI 927
LFE G + R RS + L R + E I
Sbjct: 86 LFEYMAYGDLNEFLRH----RSPRAQCS------LSHSTSSARKCGLNPLPLSCTEQLCI 135
Query: 928 MRQLVAAVHFMHSRGVVHRDLKPENLLLSGISGNL-IKI 965
+Q+ A + ++ R VHRDL N L + N+ +KI
Sbjct: 136 AKQVAAGMAYLSERKFVHRDLATRNCL---VGENMVVKI 171
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase C. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase C
(TrkC); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkC is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkC
to its ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for
the control of gut peristalsis.
Length = 291
Score = 43.5 bits (102), Expect = 3e-04
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 30/184 (16%)
Query: 411 ISRKIDCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIR------- 463
++ + D E LL Q H +IV + V D +V E +K G+L +R
Sbjct: 48 LAARKDFQREAELLTNLQ-HEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAM 106
Query: 464 ---------QKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNI 514
KG G ++ I Q+ + + ++ S+ VHRDL N L A +
Sbjct: 107 ILVDGQPRQAKGELGLSQ--MLHIASQIASGMVYLASQHFVHRDLATRNCLVG--ANLLV 162
Query: 515 KVVDFGFAC------LKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNVL 568
K+ DFG + R HT +++ PE + K + D+WS GVIL +
Sbjct: 163 KIGDFGMSRDVYSTDYYRVGGHT-MLPIRWMPPESIMYRK--FTTESDVWSFGVILWEIF 219
Query: 569 RQDK 572
K
Sbjct: 220 TYGK 223
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation
motif) sequences of the activated TCR zeta-chain through
its SH2 domains, leading to its phosphorylation and
activation. It then phosphorylates target proteins,
which propagate the signals to downstream pathways.
Zap-70 is hardly detected in normal peripheral B-cells,
but is present in some B-cell malignancies. It is used
as a diagnostic marker for chronic lymphocytic leukemia
(CLL) as it is associated with the more aggressive
subtype of the disease.
Length = 257
Score = 43.0 bits (101), Expect = 4e-04
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
Query: 386 LGDGSYSVCRRCVEKSTGQE--YAVKIISRKIDCSEEINLLRACQ-----GHPNIVNLHC 438
LG G++ ++ V K ++ A+K++ + + S ++R + +P IV +
Sbjct: 3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIG 62
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
V + E LV+E+ GG L + K + T + +M Q+ + ++ + VHRD
Sbjct: 63 VCEAE-ALMLVMEMASGGPLNKFLSGK-KDEITVSNVVELMHQVSMGMKYLEGKNFVHRD 120
Query: 499 LKPENLLFSDPAGDNIKVVDFGF--ACLKRESLHTP----CFTLQYAAPEVLRQDKSGYD 552
L N+L + K+ DFG A +S + + L++ APE + K +
Sbjct: 121 LAARNVLLVNQ--HYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRK--FS 176
Query: 553 ENCDLWSLGVIL 564
D+WS G+ +
Sbjct: 177 SRSDVWSYGITM 188
Score = 31.8 bits (72), Expect = 1.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LV+E+ GG L + K + T + +M Q+ + ++ + VHRDL N+LL
Sbjct: 71 LVMEMASGGPLNKFLSGK-KDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLL 128
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 42.4 bits (100), Expect = 7e-04
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 24/151 (15%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLV------ 483
H NI+ + V ++ VL L Q+ R G N + +QLV
Sbjct: 67 HQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQI 126
Query: 484 -AAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA---------CLKRESLHTPC 533
+ ++H RGV+H+D+ N + + +K+ D + CL ++ + P
Sbjct: 127 ACGMSYLHKRGVIHKDIAARNCVIDEEL--QVKITDNALSRDLFPMDYHCLG-DNENRP- 182
Query: 534 FTLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+++ A E L Y D+WS GV+L
Sbjct: 183 --VKWMALESLV--NKEYSSASDVWSFGVLL 209
>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor beta.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) beta; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
beta is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR beta forms homodimers or heterodimers
with PDGFR alpha, depending on the nature of the PDGF
ligand. PDGF-BB and PDGF-DD induce PDGFR beta
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
beta signaling leads to a variety of cellular effects
including the stimulation of cell growth and chemotaxis,
as well as the inhibition of apoptosis and GAP
junctional communication. It is critical in normal
angiogenesis as it is involved in the recruitment of
pericytes and smooth muscle cells essential for vessel
stability. Aberrant PDGFR beta expression is associated
with some human cancers. The continuously-active fusion
proteins of PDGFR beta with COL1A1 and TEL are
associated with dermatofibrosarcoma protuberans (DFSP)
and a subset of chronic myelomonocytic leukemia (CMML),
respectively.
Length = 401
Score = 42.7 bits (100), Expect = 7e-04
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFT----- 535
Q+ + F+ S+ VHRDL N+L + G +K+ DFG A R+ + +
Sbjct: 247 QVANGMEFLASKNCVHRDLAARNVLICE--GKLVKICDFGLA---RDIMRDSNYISKGST 301
Query: 536 ---LQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYDE 577
L++ APE + + Y D+WS G++L + + Y E
Sbjct: 302 FLPLKWMAPESIFN--NLYTTLSDVWSFGILLWEIFTLGGTPYPE 344
Score = 30.0 bits (67), Expect = 6.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 930 QLVAAVHFMHSRGVVHRDLKPENLLLSGISGNLIKI 965
Q+ + F+ S+ VHRDL N+L+ G L+KI
Sbjct: 247 QVANGMEFLASKNCVHRDLAARNVLIC--EGKLVKI 280
>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 41.4 bits (98), Expect = 8e-04
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 439 VFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRD 498
F D + +V+E ++G L D I G E + R++ V +HS G++H D
Sbjct: 67 YFVDPENFIIVMEYIEGEPLKDLINSNG------MEELELSREIGRLVGKLHSAGIIHGD 120
Query: 499 LKPENLLFSDPAGDNIKVVDFGFA 522
L N++ S G I ++DFG A
Sbjct: 121 LTTSNMILS---GGKIYLIDFGLA 141
Score = 34.1 bits (79), Expect = 0.20
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLLS 956
+V+E ++G L D I G E + R++ V +HS G++H DL N++LS
Sbjct: 76 IVMEYIEGEPLKDLINSNG------MEELELSREIGRLVGKLHSAGIIHGDLTTSNMILS 129
Query: 957 G 957
G
Sbjct: 130 G 130
>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases. Protein
Tyrosine Kinase (PTK) family; Janus kinase (Jak)
subfamily; pseudokinase domain (repeat1). The Jak
subfamily is composed of Jak1, Jak2, Jak3, TYK2, and
similar proteins. The PTKc (catalytic domain) family to
which this subfamily belongs, is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal catalytic tyr
kinase domain. The pseudokinase domain shows similarity
to tyr kinases but lacks crucial residues for catalytic
activity and ATP binding. It modulates the kinase
activity of the C-terminal catalytic domain. Most Jaks
are expressed in a wide variety of tissues, except for
Jak3, which is expressed only in hematopoietic cells.
Jaks are crucial for cytokine receptor signaling. They
are activated by autophosphorylation upon
cytokine-induced receptor aggregation, and subsequently
trigger downstream signaling events such as the
phosphorylation of signal transducers and activators of
transcription (STATs). Jaks are also involved in
regulating the surface expression of some cytokine
receptors. The Jak-STAT pathway is involved in many
biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 259
Score = 41.7 bits (98), Expect = 0.001
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 419 EEINLLRACQGHPNIVNLH--CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEAS 476
E +L+ H ++V L+ CV + +V E +K G L D + + + +
Sbjct: 50 ETASLMS-QLSHKHLVKLYGVCVRDE---NIMVEEYVKFGPL-DVFLHREKNNVSLHWKL 104
Query: 477 RIMRQLVAAVHFMHSRGVVHRDLKPENLLFS--DPAGDN---IKVVDFGFA--CLKRESL 529
+ +QL +A+H++ + +VH ++ +N+L + IK+ D G L RE
Sbjct: 105 DVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREER 164
Query: 530 HTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+ + APE +R ++ D WS G L
Sbjct: 165 VER---IPWIAPECIRNGQASLTIAADKWSFGTTL 196
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 41.5 bits (97), Expect = 0.001
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 448 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFS 507
LV +L G LLD +RQ R Q+ ++++ +VHR+L N+L
Sbjct: 85 LVTQLSPLGSLLDHVRQH-RDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLK 143
Query: 508 DPAGDNIKVVDFGFACL----KRESLHTPCFT-LQYAAPEVLRQDKSGYDENCDLWSLGV 562
+ +++ DFG A L ++ ++ T +++ A E + + Y D+WS GV
Sbjct: 144 SDS--IVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGR--YTHQSDVWSYGV 199
Query: 563 IL 564
+
Sbjct: 200 TV 201
Score = 32.2 bits (73), Expect = 1.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LV +L G LLD +RQ R Q+ ++++ +VHR+L N+LL
Sbjct: 85 LVTQLSPLGSLLDHVRQH-RDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILL 142
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 41.1 bits (96), Expect = 0.001
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 384 GILGDGSYSVCRRCV--EKSTGQEYAVKIISRKI-DCSEEINLLRACQ-----GHPNIVN 435
G LG G++ ++ + K + + AVKI+ D + + LLR +P IV
Sbjct: 1 GELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVR 60
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVV 495
+ + + E LV+EL + G L ++ QK + TE + ++ Q+ + ++ V
Sbjct: 61 MIGICEAE-SWMLVMELAELGPL-NKFLQKNK-HVTEKNITELVHQVSMGMKYLEETNFV 117
Query: 496 HRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLH------TPCFTLQYAAPEVLRQDKS 549
HRDL N+L K+ DFG + + + +++ APE + K
Sbjct: 118 HRDLAARNVLLV--TQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYK- 174
Query: 550 GYDENCDLWSLGVIL 564
+ D+WS GV++
Sbjct: 175 -FSSKSDVWSFGVLM 188
Score = 30.7 bits (69), Expect = 2.8
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LV+EL + G L ++ QK + TE + ++ Q+ + ++ VHRDL N+LL
Sbjct: 72 LVMELAELGPL-NKFLQKNK-HVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLL 128
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 41.5 bits (97), Expect = 0.001
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 30/158 (18%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGR-----CGFTENEASR------- 477
HPNIV L V E ++ E L G+L + + + C E+ +
Sbjct: 66 HPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGD 125
Query: 478 ---IMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF 534
I Q+ A + ++ S VH+DL N+L + ++K+ D G L RE +
Sbjct: 126 FLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQL--HVKISDLG---LSREIYSADYY 180
Query: 535 TLQ--------YAAPEVLRQDKSGYDENCDLWSLGVIL 564
+Q + PE + K + + D+WS GV+L
Sbjct: 181 RVQPKSLLPIRWMPPEAIMYGK--FSSDSDIWSFGVVL 216
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 41.2 bits (96), Expect = 0.002
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 448 LVLELLKGGELLDRIRQ-KGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLF 506
LV +L+ G LLD +R+ K R G + Q+ + ++ +VHRDL N+L
Sbjct: 85 LVTQLMPYGCLLDYVRENKDRIG--SQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLV 142
Query: 507 SDPAGDNIKVVDFGFACL---KRESLHTPC--FTLQYAAPEVLRQDKSGYDENCDLWSLG 561
P +++K+ DFG A L H +++ A E + + + D+WS G
Sbjct: 143 KSP--NHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRR--FTHQSDVWSYG 198
Query: 562 VILVNVLRQDKSGYD 576
V + ++ YD
Sbjct: 199 VTVWELMTFGAKPYD 213
Score = 30.0 bits (67), Expect = 6.1
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 897 LVLELLKGGELLDRIRQ-KGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
LV +L+ G LLD +R+ K R G + Q+ + ++ +VHRDL N+L+
Sbjct: 85 LVTQLMPYGCLLDYVRENKDRIG--SQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLV 142
Query: 956 SGISGNLIKI 965
S N +KI
Sbjct: 143 K--SPNHVKI 150
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused
by abnormalities in InsR signaling, has been described
in diabetes, hypertension, cardiovascular disease,
metabolic syndrome, heart failure, and female
infertility.
Length = 288
Score = 41.1 bits (96), Expect = 0.002
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 35/206 (16%)
Query: 386 LGDGSYS-----VCRRCVEKSTGQEYAVKIISRKIDCSEEINLL------RACQGHPNIV 434
LG GS+ R ++ AVK ++ E I L + H ++V
Sbjct: 14 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-HVV 72
Query: 435 NLHCVFQDEVHTYLVLELLKGGELLDRIR--------QKGRCGFTENEASRIMRQLVAAV 486
L V T +V+EL+ G+L +R GR T E ++ ++ +
Sbjct: 73 RLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGM 132
Query: 487 HFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF--------TLQY 538
+++++ VHRDL N + + +K+ DFG + R+ T + +++
Sbjct: 133 AYLNAKKFVHRDLAARNCMVAH--DFTVKIGDFG---MTRDIYETDYYRKGGKGLLPVRW 187
Query: 539 AAPEVLRQDKSGYDENCDLWSLGVIL 564
APE L+ + + D+WS GV+L
Sbjct: 188 MAPESLKD--GVFTTSSDMWSFGVVL 211
>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine
Kinases, Apoptosis-associated tyrosine kinases. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase (Aatyk) subfamily; catalytic (c) domain.
The Aatyk subfamily is also referred to as the lemur
tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1
(Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Aatyk proteins are mostly receptor tyr kinases (RTKs)
containing a transmembrane segment and a long C-terminal
cytoplasmic tail with a catalytic domain. Aatyk1 does
not contain a transmembrane segment and is a cytoplasmic
(or nonreceptor) kinase. Aatyk proteins are classified
as tyr kinases based on overall sequence similarity and
the phylogenetic tree. However, analysis of catalytic
residues suggests that Aatyk proteins may be
multispecific kinases, functioning also as
serine/threonine kinases. They are involved in neural
differentiation, nerve growth factor (NGF) signaling,
apoptosis, and spermatogenesis.
Length = 269
Score = 40.3 bits (94), Expect = 0.003
Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 44/188 (23%)
Query: 419 EEINLLRACQGHPNIVNLHCVFQ-DEVHTYL-VLELLKGGELLDRIRQKGRCGFTENEAS 476
+E+ R HPN+ L C+ Q E YL VLE G+L + +R + +
Sbjct: 44 QEVQPYRELN-HPNV--LQCLGQCIESIPYLLVLEFCPLGDLKNYLR---SNRGMVAQMA 97
Query: 477 RIMRQL------VAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA-CLKRESL 529
+ + + ++H +H DL N + A ++K+ D+G A E
Sbjct: 98 QKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLT--ADLSVKIGDYGLALEQYPEDY 155
Query: 530 HTP----CFTLQYAAPEVL--RQDKSGYDENCDLWSLGVILVNVLRQDKSGYDENCDLWS 583
+ L++ APE++ R + Q K ++WS
Sbjct: 156 YITKDCHAVPLRWLAPELVEIRGQD----------------LLPKDQTKKS-----NIWS 194
Query: 584 LGVILYTM 591
LGV ++ +
Sbjct: 195 LGVTMWEL 202
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 39.9 bits (93), Expect = 0.003
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 477 RIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACL 524
R++ L+A + + +VH DL P NLL DP G V+DF A L
Sbjct: 151 RLLAALLALLPALP-LVLVHGDLHPGNLLV-DPGGRVTGVIDFEDAGL 196
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase A. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase A
(TrkA); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkA is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkA
to its ligand, nerve growth factor (NGF), results in
receptor oligomerization and activation of the catalytic
domain. TrkA is expressed mainly in neural-crest-derived
sensory and sympathetic neurons of the peripheral
nervous system, and in basal forebrain cholinergic
neurons of the central nervous system. It is critical
for neuronal growth, differentiation and survival.
Alternative TrkA splicing has been implicated as a
pivotal regulator of neuroblastoma (NB) behavior. Normal
TrkA expression is associated with better NB prognosis,
while the hypoxia-regulated TrkAIII splice variant
promotes NB pathogenesis and progression. Aberrant TrkA
expression has also been demonstrated in non-neural
tumors including prostate, breast, lung, and pancreatic
cancers.
Length = 280
Score = 40.0 bits (93), Expect = 0.004
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 39/210 (18%)
Query: 386 LGDGSY-----SVCRRCVEKSTGQEYAVKII-----SRKIDCSEEINLLRACQGHPNIVN 435
LG+G++ + C + + AVK + S + D E LL Q H +IV
Sbjct: 13 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQ-HQHIVR 71
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIRQKG------------RCG-FTENEASRIMRQL 482
+ V + +V E ++ G+L +R G G T + I Q+
Sbjct: 72 FYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQI 131
Query: 483 VAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF-------- 534
+ + ++ S VHRDL N L G +K+ DFG + R+ T +
Sbjct: 132 ASGMVYLASLHFVHRDLATRNCLVGQ--GLVVKIGDFG---MSRDIYSTDYYRVGGRTML 186
Query: 535 TLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+++ PE + K + D+WS GV+L
Sbjct: 187 PIRWMPPESILYRK--FTTESDIWSFGVVL 214
>gnl|CDD|240174 cd05153, HomoserineK_II, Homoserine Kinase, type II. Homoserine
kinase is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of unusual homoserine kinases, from a subset of
bacteria, which have a PK fold. These proteins do not
bear any similarity to the GHMP family homoserine
kinases present in most bacteria and eukaryotes.
Homoserine kinase catalyzes the transfer of the
gamma-phosphoryl group from ATP to L-homoserine
producing L-homoserine phosphate, an intermediate in the
production of the amino acids threonine, methionine, and
isoleucine.
Length = 296
Score = 38.0 bits (89), Expect = 0.019
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 470 FTENEASRIMRQLVAAVHFMHS---RGVVHRDLKPENLLFSDPAGDNIKVV-DFGFAC 523
+ + + + +L F S RGV+H DL +N+LF GD + V DF FAC
Sbjct: 150 LSAEDRALLADELARQDAFDPSDLPRGVIHADLFRDNVLFD---GDELSGVIDFYFAC 204
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival
of normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation,
the suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 37.7 bits (87), Expect = 0.020
Identities = 40/205 (19%), Positives = 84/205 (40%), Gaps = 33/205 (16%)
Query: 386 LGDGSYSVCRRCVEKSTGQE-----YAVKIISRKIDCSEEINLLRACQ-----GHPNIVN 435
LG GS+ + + K ++ A+K ++ E I L ++V
Sbjct: 14 LGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 73
Query: 436 LHCVFQDEVHTYLVLELLKGGELLDRIR-----QKGRCGFTENEASRIMR---QLVAAVH 487
L V T +++EL+ G+L +R + ++++ ++ +
Sbjct: 74 LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMA 133
Query: 488 FMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCF--------TLQYA 539
++++ VHRDL N + ++ +K+ DFG + R+ T + +++
Sbjct: 134 YLNANKFVHRDLAARNCMVAEDF--TVKIGDFG---MTRDIYETDYYRKGGKGLLPVRWM 188
Query: 540 APEVLRQDKSGYDENCDLWSLGVIL 564
+PE L+ + D+WS GV+L
Sbjct: 189 SPESLKD--GVFTTYSDVWSFGVVL 211
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 37.9 bits (87), Expect = 0.020
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 721 QPSVPSKPVK---------RINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSS 771
+ +V S P K ++N DAS AEA +E L + S+ + E G +S
Sbjct: 21 EAAVASSPSKANGQENGHVKVNGDASPAA----AEAGAKEELQANGSAPAEETGKEEAAS 76
Query: 772 STIQLQLSPVRKKKKPDLTLPASNKAESEQLHLAEPSTLAGTKRKHKPDTSSQCSKSLPA 831
+ + +K+ T P AE+E AEP++ A + + T + P+
Sbjct: 77 A------AAAEEKEAAASTEPDKEPAEAEP---AEPASPAEAEGEAATSTEKAEDGATPS 127
Query: 832 THSTPARKKKK 842
S +KKKK
Sbjct: 128 PSSETPKKKKK 138
>gnl|CDD|218977 pfam06293, Kdo, Lipopolysaccharide kinase (Kdo/WaaP) family. These
lipopolysaccharide kinases are related to protein
kinases pfam00069. This family includes waaP (rfaP) gene
product is required for the addition of phosphate to O-4
of the first heptose residue of the lipopolysaccharide
(LPS) inner core region. It has previously been shown
that WaaP is necessary for resistance to hydrophobic and
polycationic antimicrobials in E. coli and that it is
required for virulence in invasive strains of S.
enterica.
Length = 206
Score = 37.3 bits (87), Expect = 0.021
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 448 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFS 507
L+ E L+G + L + E + R + + MH GV H DL N+L
Sbjct: 94 LLTERLEGAQDLVTWLAQWA-DPAEELRRALWRAVGRLIARMHRAGVNHTDLNAHNILL- 151
Query: 508 DPAGDNIKV--VDF 519
D KV +DF
Sbjct: 152 DTGEGGFKVWLIDF 165
Score = 35.4 bits (82), Expect = 0.079
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 897 LVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLL 955
L+ E L+G + L + E + R + + MH GV H DL N+LL
Sbjct: 94 LLTERLEGAQDLVTWLAQWA-DPAEELRRALWRAVGRLIARMHRAGVNHTDLNAHNILL 151
>gnl|CDD|240167 cd05144, RIO2_C, RIO kinase family; RIO2, C-terminal catalytic
domain. The RIO kinase catalytic domain family is part
of a larger superfamily, that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase (PI3K). RIO kinases are
atypical protein serine kinases containing a kinase
catalytic signature, but otherwise show very little
sequence similarity to typical PKs. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. The RIO
catalytic domain is truncated compared to the catalytic
domains of typical PKs, with deletions of the loops
responsible for substrate binding. RIO2 is present in
archaea and eukaryotes. It contains an N-terminal winged
helix (wHTH) domain and a C-terminal RIO kinase
catalytic domain. The wHTH domain is primarily seen in
DNA-binding proteins, although some wHTH domains may be
involved in RNA recognition. RIO2 is essential for
survival and is necessary for rRNA cleavage during 40S
ribosomal subunit maturation. The biological substrates
of RIO2 are still unknown.
Length = 198
Score = 36.7 bits (86), Expect = 0.023
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 25/89 (28%)
Query: 434 VNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEAS---RIMRQLVAAVHFMH 490
N H V V+E + G EL R+R E+ I+ ++V A
Sbjct: 103 WNRHAV---------VMEYIDGVEL-YRVRV------LEDPEEVLDEILEEIVKAYK--- 143
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDF 519
G++H DL N+L D + I ++D+
Sbjct: 144 -HGIIHGDLSEFNILVDD--DEKIYIIDW 169
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 38.0 bits (88), Expect = 0.027
Identities = 38/181 (20%), Positives = 56/181 (30%), Gaps = 27/181 (14%)
Query: 676 SAKLAQRRKNKNVSNDNSRSFSSTSSSLSSSSSGTSSLKTPCSSTQPSVPSKPVKRINKD 735
S+K ++ KN ++ SS S +SS SS + S S K
Sbjct: 745 SSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKE---- 800
Query: 736 ASSGTVFDFAEARVQEYLSSLSSSS-SSEHGTS--PPSSSTIQLQLSPVRKKKKPDLTLP 792
E + S LSSSS EH + P P T
Sbjct: 801 ----------EEMLPSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGP----FSASSTKS 846
Query: 793 ASNKAESEQLHLAEPSTLAGTKRKHK--PDTSSQCSK----SLPATHSTPARKKKKADRQ 846
+S + + + E + +K DT ++ S L S P R K D +
Sbjct: 847 SSKSSSTSKHRKTEGKGSSTSKEHKGSSGDTPNKASSFPVPPLSNGSSKPRRPKLVFDDR 906
Query: 847 P 847
Sbjct: 907 V 907
Score = 38.0 bits (88), Expect = 0.032
Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 48/241 (19%)
Query: 671 LQDVTSAKLAQRRKNKNV-SNDNSRSFSST-------SSSLSSSSSGTSSLKTPCSSTQP 722
Q V+ Q++ + + ++ NS+S +S SSS S + K P +T P
Sbjct: 326 SQHVSPGTQNQKQYDPSSKTSTNSQSGTSMLEDDLKLSSSEDSDEEQATE-KPPSRNTPP 384
Query: 723 SVPS---KPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTS------PPSSST 773
S PS +P + +SS + + + E SS S S +E + PPS++
Sbjct: 385 SAPSSNPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPRTASPEPEPPSTNK 444
Query: 774 IQLQ--LSPVRKKKKP-----DLTLPASNKAESE------------QLHLAEPSTLAGTK 814
QL L+ V K P E E + P + + K
Sbjct: 445 WQLDNWLNKVNPHKVSPAESVSSNPPIKQPMEKEGKVKSSGSQYHPESKEPPPKSSSKEK 504
Query: 815 RKHK-----PDTSSQCSKSLPATHSTPARKK------KKADRQPAKQEEKQPVPQTTPPT 863
R+ + P++ KS + + P R+ KK ++ A E P++ P T
Sbjct: 505 RRPRTAQKGPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGDERTGLRPESEPGT 564
Query: 864 D 864
Sbjct: 565 L 565
Score = 36.4 bits (84), Expect = 0.088
Identities = 55/218 (25%), Positives = 76/218 (34%), Gaps = 52/218 (23%)
Query: 680 AQRRKNKNVSN--DNSRSFSSTSSSLSSSSSGTSSLKTPCSSTQ---------PSVPSKP 728
A++RK K+ S SR F T SS SS S SL P S + + P
Sbjct: 602 AEKRKYKSPSKIVPKSREFIETDSS-SSDSPEDESL-PPSSQSPGNTESSKESCASLRTP 659
Query: 729 VKRINKDASSGTVFD--FAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQLS------- 779
V R + + + D + R E LS L S S +++ L
Sbjct: 660 VCRSSVGSQNDLSKDRLLSPMRETELLSPLRDS-------EERYSLWVKIDLDLLSRIPG 712
Query: 780 -----PVRKKKKPDLTLPASNKAESEQLHLAEPSTLAGTKRKHKPDT------------- 821
V K +L A K S+ A + + KRKHK D
Sbjct: 713 HPYKKGVPPKPAEKDSLSAPKKQTSKT---ASEKSSSKGKRKHKNDEEADKIESKKQRLE 769
Query: 822 --SSQCSKSLPATHSTPARKKKKADRQPAKQEEKQPVP 857
SS CS S ++H + K+ K+EE P P
Sbjct: 770 EKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEEMLPSP 807
Score = 30.3 bits (68), Expect = 5.9
Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 30/226 (13%)
Query: 635 ELTKSLLTVNPAQRIRMMRVKLTFHAFHQAQKEGFRLQDVTSAKLAQRRKNKNVSNDNSR 694
+L L VNP + V +KEG +++ S + ++ S+ +
Sbjct: 446 QLDNWLNKVNPHKVSPAESVSSNPPIKQPMEKEG-KVKSSGSQYHPESKEPPPKSSSKEK 504
Query: 695 SFSSTSSSLSSSSSGTSSLKTPCSSTQP----SVPSKPVKRINKDASSGTVFDFAEARVQ 750
T+ SG K+P S P +V K K+ K ++ + R +
Sbjct: 505 RRPRTAQK--GPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASA---GDERTGLRPE 559
Query: 751 EYLSSLSSSSSSEHGTSPPSSSTIQLQLSPVRKKKKPDLTLPASNKAESEQLHLAEPSTL 810
+L SS + P ++T + RK+ K + A
Sbjct: 560 SEPGTLPYGSSVQTPPDRPKAATKGSRKPSPRKEPKSSVPPAAE---------------- 603
Query: 811 AGTKRKHK-PDTSSQCSKSLPATHSTPARKKKKADRQPAKQEEKQP 855
KRK+K P S+ T S+ + + P+ Q
Sbjct: 604 ---KRKYKSPSKIVPKSREFIETDSSSSDSPEDESLPPSSQSPGNT 646
>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Janus kinase 1. Protein
Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak1 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak1 is widely expressed in
many tissues. Many cytokines are dependent on Jak1 for
signaling, including those that use the shared receptor
subunits common gamma chain (IL-2, IL-4, IL-7, IL-9,
IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M,
G-CSF, and IFNs, among others). The many varied
interactions of Jak1 and its ubiquitous expression
suggest many biological roles. Jak1 is important in
neurological development, as well as in lymphoid
development and function. It also plays a role in the
pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 262
Score = 37.2 bits (86), Expect = 0.031
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 24/183 (13%)
Query: 399 EKSTGQEYAVKIISRKIDCS---------EEINLLRACQGHPNIVNLHCVFQDEVHTYLV 449
+ E +K+I + +D S E +++R H +IV L+ V +V +V
Sbjct: 24 DDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVS-HKHIVLLYGVCVRDVENIMV 82
Query: 450 LELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDP 509
E ++ G L D + T ++ +QL +A+ ++ + +VH ++ +N+L +
Sbjct: 83 EEFVEFGPL-DLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLARE 141
Query: 510 AGDN-----IKVVDFG--FACLKRESLHTPCFT-LQYAAPEVLRQDKSGYDENCDLWSLG 561
D IK+ D G L R+ C + + APE + +D D WS G
Sbjct: 142 GIDGECGPFIKLSDPGIPITVLSRQE----CVERIPWIAPECV-EDSKNLSIAADKWSFG 196
Query: 562 VIL 564
L
Sbjct: 197 TTL 199
>gnl|CDD|226168 COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase
[Signal transduction mechanisms].
Length = 204
Score = 36.1 bits (84), Expect = 0.040
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 26/97 (26%)
Query: 478 IMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA--------------C 523
++R++ V +H G+VH DL N++ S G I +DFG
Sbjct: 97 LLREVGRLVGKLHKAGIVHGDLTTSNIILS---GGRIYFIDFGLGEFSDEVEDKAVDLHV 153
Query: 524 LKR--ESLHTPCFTLQYAAPEVLRQDKSGYDENCDLW 558
L+R ES H A E+ GY E
Sbjct: 154 LERALESTH-------EKAEELFAAFLEGYREEFGEA 183
Score = 30.7 bits (70), Expect = 2.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 927 IMRQLVAAVHFMHSRGVVHRDLKPENLLLSG 957
++R++ V +H G+VH DL N++LSG
Sbjct: 97 LLREVGRLVGKLHKAGIVHGDLTTSNIILSG 127
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 36.4 bits (84), Expect = 0.068
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFT----- 535
Q+ + F+ S+ +HRD+ N+L +D G K+ DFG A R+ ++ +
Sbjct: 220 QVAQGMDFLASKNCIHRDVAARNVLLTD--GRVAKICDFGLA---RDIMNDSNYVVKGNA 274
Query: 536 ---LQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGY 575
+++ APE + Y D+WS G++L + KS Y
Sbjct: 275 RLPVKWMAPESIFD--CVYTVQSDVWSYGILLWEIFSLGKSPY 315
>gnl|CDD|233198 TIGR00938, thrB_alt, homoserine kinase, Neisseria type. Homoserine
kinase is required in the biosynthesis of threonine from
aspartate.The member of this family from Pseudomonas
aeruginosa was shown by direct assay and complementation
to act specifically as a homoserine kinase [Amino acid
biosynthesis, Aspartate family].
Length = 307
Score = 36.3 bits (84), Expect = 0.069
Identities = 19/33 (57%), Positives = 25/33 (75%), Gaps = 4/33 (12%)
Query: 492 RGVVHRDLKPENLLFSDPAGDNIK-VVDFGFAC 523
RGV+H DL P+N+LF GD++K V+DF FAC
Sbjct: 187 RGVIHADLFPDNVLFD---GDSVKGVIDFYFAC 216
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 36.7 bits (85), Expect = 0.071
Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 9/163 (5%)
Query: 700 SSSLSSSSSGTSSLKTPCSSTQPSVPSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSS 759
SS +S +SS + S PS P + ASS + + +E S SSS
Sbjct: 278 PSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASS------SSSSSRE---SSSSS 328
Query: 760 SSSEHGTSPPSSSTIQLQLSPVRKKKKPDLTLPASNKAESEQLHLAEPSTLAGTKRKHKP 819
+SS +S ++ + S +P S+ + + A S A R +
Sbjct: 329 TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388
Query: 820 DTSSQCSKSLPATHSTPARKKKKADRQPAKQEEKQPVPQTTPP 862
+ + +T + P P
Sbjct: 389 RARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYP 431
Score = 31.7 bits (72), Expect = 2.6
Identities = 38/263 (14%), Positives = 61/263 (23%), Gaps = 52/263 (19%)
Query: 594 GRVPFHARSRDDSALSIMARI----------KEGQFNFDAEAWSTVSSEAKELTKSLLTV 643
P A S S + + A + + SSE+
Sbjct: 195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENE 254
Query: 644 NPAQRIRMMRVKLTFHAFHQAQKEGFRLQDVTSAKLAQRR-------------KNKNVSN 690
P R + + R +S+ + R +
Sbjct: 255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRA 314
Query: 691 DNSRSFSSTSSSLSSSSSGTSSLKTPCSSTQPSVPSKPVKRINKDASSGTVFDFAEARVQ 750
+S S S SSS S+SSS SS S S R +
Sbjct: 315 SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR-PPPPADP----------- 362
Query: 751 EYLSSLSSSSSSEHGTSPPSSSTIQLQLSPVRKKKKPDLTLPASNKAESEQLHLAE-PST 809
SS + PSS T + A + + +
Sbjct: 363 ------SSPRKRPRPSRAPSSPAAS----------AGRPTRRRARAAVAGRARRRDATGR 406
Query: 810 LAGTKRKHKPDTSSQCSKSLPAT 832
+ + P + S + A
Sbjct: 407 FPAGRPRPSPLDAGAASGAFYAR 429
>gnl|CDD|225213 COG2334, COG2334, Putative homoserine kinase type II (protein
kinase fold) [General function prediction only].
Length = 331
Score = 35.8 bits (83), Expect = 0.091
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 492 RGVVHRDLKPENLLFSDPAGDNIKVVDFGFAC 523
++H DL P+N+LF D D +DF A
Sbjct: 197 DQIIHGDLHPDNVLF-DDDTDVSGFIDFDDAG 227
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 36.1 bits (83), Expect = 0.12
Identities = 35/144 (24%), Positives = 46/144 (31%), Gaps = 28/144 (19%)
Query: 722 PSVPSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQLSPV 781
P PS+ I D G + R+ ++ L +S + G PP L P
Sbjct: 2509 PPAPSRLAPAILPDEPVG---EPVHPRMLTWIRGLEELASDDAGDPPPP-------LPPA 2558
Query: 782 RKKKKPDLTLPASNKAESEQLHLAEPSTLAGTKRKHKPDTSSQCSKSLPATHSTPARKKK 841
PD ++P A PS A T R +PD Q A P
Sbjct: 2559 APPAAPDRSVPPPRPA-------PRPSEPAVTSRARRPDAPPQ-----SARPRAPV---- 2602
Query: 842 KADR-QPAKQEEKQPVPQTTPPTD 864
DR P P+P T D
Sbjct: 2603 -DDRGDPRGPAPPSPLPPDTHAPD 2625
Score = 34.5 bits (79), Expect = 0.39
Identities = 21/154 (13%), Positives = 36/154 (23%), Gaps = 2/154 (1%)
Query: 709 GTSSLKTPCSSTQPSVPSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSP 768
G + P ++ P P+ P T A +
Sbjct: 2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVL 2812
Query: 769 PSSSTIQLQLSPVRKKKKPDLTLPASNKAESEQLHLAEPSTLAGTKRKHKPDTSSQCSKS 828
++ + SP P P + L G+ S+S
Sbjct: 2813 APAAALPPAASPAGPLPPPTSAQPTAPPPPPGPP--PPSLPLGGSVAPGGDVRRRPPSRS 2870
Query: 829 LPATHSTPARKKKKADRQPAKQEEKQPVPQTTPP 862
A + PAR + +PA +
Sbjct: 2871 PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQ 2904
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 35.3 bits (81), Expect = 0.13
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 894 HTYLVLE--LLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPE 951
+ +++LE + E+ RI+ K + IM+ ++ + ++H G+ H D+KPE
Sbjct: 101 YRFILLEKLVENTKEIFKRIKCKNK-----KLIKNIMKDMLTTLEYIHEHGISHGDIKPE 155
Query: 952 NLLLSG 957
N+++ G
Sbjct: 156 NIMVDG 161
Score = 33.8 bits (77), Expect = 0.43
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 445 HTYLVLE--LLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPE 502
+ +++LE + E+ RI+ K + IM+ ++ + ++H G+ H D+KPE
Sbjct: 101 YRFILLEKLVENTKEIFKRIKCKNK-----KLIKNIMKDMLTTLEYIHEHGISHGDIKPE 155
Query: 503 NLL 505
N++
Sbjct: 156 NIM 158
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 34.8 bits (80), Expect = 0.13
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 8/115 (6%)
Query: 754 SSLSSSSSSEHGTSPPSSSTIQLQLSPVRKKKKPDLTLPASNKAESEQLHLAEPSTLAGT 813
S L ++S + P + + +PV P+ A + + A A
Sbjct: 94 SDLQKATSM---SEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAP 150
Query: 814 KRKHKPDTSSQ---CSKSLPATHSTPARKKKK--ADRQPAKQEEKQPVPQTTPPT 863
K KP S + T + A+K KK A +P + P +TT
Sbjct: 151 KAPAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKK 205
>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine
[Unknown function, General].
Length = 199
Score = 34.5 bits (80), Expect = 0.14
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 489 MHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA 522
+H G+VH DL N++ D D + ++DFG
Sbjct: 106 LHKAGIVHGDLTTSNIIVRD---DKLYLIDFGLG 136
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Discoidin Domain Receptor
(DDR)-like proteins; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR-like
proteins are members of the DDR subfamily, which are
receptor tyr kinases (RTKs) containing an extracellular
discoidin homology domain, a transmembrane segment, an
extended juxtamembrane region, and an intracellular
catalytic domain. The binding of the ligand, collagen,
to DDRs results in a slow but sustained receptor
activation. DDRs regulate cell adhesion, proliferation,
and extracellular matrix remodeling. They have been
linked to a variety of human cancers including breast,
colon, ovarian, brain, and lung. There is no evidence
showing that DDRs act as transforming oncogenes. They
are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 295
Score = 35.0 bits (80), Expect = 0.16
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 430 HPNIVNLHCVFQDEVHTYLVLELLKGGELLDRIRQKG-RCGFTE-NEASRIMR------- 480
+PNI+ L V + ++ E ++ G+L + Q+ FT N +
Sbjct: 76 NPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMA 135
Query: 481 -QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA 522
Q+ + + ++ S VHRDL N L + IK+ DFG +
Sbjct: 136 VQIASGMKYLASLNFVHRDLATRNCLVGNHY--TIKIADFGMS 176
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 34.8 bits (80), Expect = 0.23
Identities = 26/202 (12%), Positives = 53/202 (26%), Gaps = 26/202 (12%)
Query: 673 DVTSAKLAQRRKNKNVSNDNSRSF--------SSTSSSLSSSSSGTSSLKTPCSSTQPSV 724
+ + SND+ S + +++ S+ + T SST S
Sbjct: 30 PQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDS- 88
Query: 725 PSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQLSPVRKK 784
+ + I K+ + + SL++ + + S Q + S
Sbjct: 89 -NNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNS----- 142
Query: 785 KKPDLTLPASNKAESEQLHLAEPSTLAGTKRKHKPDTSSQCSK-SLPATHSTPARKKKKA 843
+ + K D + S T + + K+ +
Sbjct: 143 ---------EKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNS 193
Query: 844 DRQPAK-QEEKQPVPQTTPPTD 864
+ Q QP T
Sbjct: 194 PKPTQPNQSNSQPASDDTANQK 215
Score = 30.1 bits (68), Expect = 7.0
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 1/111 (0%)
Query: 672 QDVTSAKLAQRRKNKNVSNDNSRSFSSTSSSLSSSSSGTSSLKTPCSSTQPSVPSKPVKR 731
+ TS K K + NS+ S +++ SSS S+ + S+ K+
Sbjct: 183 KPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKK 242
Query: 732 INKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQLSPVR 782
KD +S + D L + +H + P S + S R
Sbjct: 243 TQKDYASQSKKD-KTETSNTKNPQLPTQDELKHKSKPAQSFENDVNQSNTR 292
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 34.5 bits (79), Expect = 0.29
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFAC-LKRESLH----TPCFT 535
Q+ + F+ S+ +HRDL N+L + G K+ DFG A ++ +S +
Sbjct: 222 QVAKGMSFLASKNCIHRDLAARNILLTH--GRITKICDFGLARDIRNDSNYVVKGNARLP 279
Query: 536 LQYAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGY 575
+++ APE + Y D+WS G++L + S Y
Sbjct: 280 VKWMAPESIFN--CVYTFESDVWSYGILLWEIFSLGSSPY 317
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 31.9 bits (73), Expect = 0.33
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 663 QAQKEGFRLQDVTSAKLAQRRKNKNVSNDNSRSFSSTSSSLSSSSSGTSSLKT 715
++ G VTS ++ N + S+ NS + S+SSS S SS + + T
Sbjct: 10 NMKRSGSSNTSVTSGSVSSSGSNSSSSSSNSSNGGSSSSSSSGDSSSGTRITT 62
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 34.1 bits (78), Expect = 0.38
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 681 QRRKNKNVSNDNSRSFSSTSSSLSSSSSGTSSLKTPCSSTQPSVPSKPVKRINKDASSGT 740
+ N+N SN + +S SS + S+ SSS + K +S S K + +++GT
Sbjct: 333 AKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDASGMSANGT 392
Query: 741 V 741
V
Sbjct: 393 V 393
Score = 29.9 bits (67), Expect = 8.5
Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 30/228 (13%)
Query: 668 GFRLQDVTSAKLAQRRKNKNVSNDNSRSFS--------STSSSLSSSSSGTSSLKTPC-S 718
GF + S + R K + V +N + +LS + S + +
Sbjct: 167 GFGFKSYVSYRFRLR-KQREVQKENEFYMQLLQQALPKEENHTLSVTDKEKSEASSKGLT 225
Query: 719 STQPSVPSKPVKR--INKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQL 776
ST+ VP + +S+ + + + + G + S
Sbjct: 226 STKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHHSKHADS 285
Query: 777 QLSPV--------RKKKKPDLT------LPASNKAESEQLHLAEPSTLAGTKRKH---KP 819
+L + + + T S+ A + + + + R P
Sbjct: 286 KLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSP 345
Query: 820 DTSSQCSKSLP-ATHSTPARKKKKADRQPAKQEEKQPVPQTTPPTDLV 866
+ S + S+P ++ S K+K+A + + + + V
Sbjct: 346 KSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDASGMSANGTV 393
>gnl|CDD|223584 COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme
transport and metabolism].
Length = 269
Score = 33.1 bits (76), Expect = 0.53
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 494 VVHRDLKPENLLFSDPAGDNIKVVDFGFACL 524
H DL P NLL +D + ++D+ +A L
Sbjct: 155 PCHNDLNPGNLLLTDK--GGLFLIDWEYAGL 183
>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; pseudokinase domain (repeat 1). The
PTKc (catalytic domain) family to which this subfamily
belongs, is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal tyr kinase domain. The pseudokinase
domain shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak2 is widely expressed in
many tissues while Jak3 is expressed only in
hematopoietic cells. Jak2 is essential for the signaling
of hormone-like cytokines such as growth hormone,
erythropoietin, thrombopoietin, and prolactin, as well
as some IFNs and cytokines that signal through the IL-3
and gp130 receptors. Jak3 binds the shared receptor
subunit common gamma chain and thus, is essential in the
signaling of cytokines that use it such as IL-2, IL-4,
IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice
results in an embryonic lethal phenotype with multiple
defects including erythropoietic and cardiac
abnormalities. It is the only Jak gene that results in a
lethal phenotype when disrupted in mice. A mutation in
the pseudokinase domain of Jak2, V617F, is present in
many myeloproliferative diseases, including almost all
patients with polycythemia vera, and 50% of patients
with essential thrombocytosis and myelofibrosis. Jak3 is
important in lymphoid development and myeloid cell
differentiation. Inactivating mutations in Jak3 have
been reported in humans with severe combined
immunodeficiency (SCID).
Length = 258
Score = 32.9 bits (75), Expect = 0.61
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 30/201 (14%)
Query: 386 LGDGS----YSVCRRCVEKSTGQEYAVKIISRKID-----CSE---EINLLRACQGHPNI 433
LG G+ + RR V G+ + +++ + +D SE E + + H ++
Sbjct: 3 LGQGTFTKIFKGIRREV-GDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHL 61
Query: 434 VNLH--CVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHS 491
V + CV DE + +V E +K G L D +K + + + +QL A+HF+
Sbjct: 62 VLNYGVCVCGDE--SIMVQEYVKFGSL-DTYLKKNKNLINISWKLEVAKQLAWALHFLED 118
Query: 492 RGVVHRDLKPENLLFS---DPAGDN---IKVVDFGF--ACLKRESLHTPCFTLQYAAPEV 543
+G+ H ++ +N+L D N IK+ D G L +E L + + PE
Sbjct: 119 KGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLE---RIPWVPPEC 175
Query: 544 LRQDKSGYDENCDLWSLGVIL 564
+ ++ D WS G L
Sbjct: 176 IENPQN-LSLAADKWSFGTTL 195
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 33.5 bits (77), Expect = 0.62
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 24/126 (19%)
Query: 692 NSRSFSSTSSSLSSSSSGTSSLKTPCSSTQPSVPSKPVKRINKDASSGTVFDFAEARVQE 751
+S + +S S S +SSSS +SS +P SST P +
Sbjct: 2 SSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSA-------------------- 41
Query: 752 YLSSLSSSSSSEHGTSPPSSSTIQLQLSPVRKKKKPDLTLPASNKAESEQLHLAEPSTLA 811
SSL + S S S + L P + P L +A + L E + ++
Sbjct: 42 --SSLLHTPSILPLPKLSSPSPPSVTLPPAATTQTPQLNP--LQRAAAAALDAVESALVS 97
Query: 812 GTKRKH 817
+R+H
Sbjct: 98 HLERQH 103
>gnl|CDD|223025 PHA03253, PHA03253, UL35; Provisional.
Length = 609
Score = 33.4 bits (76), Expect = 0.66
Identities = 38/155 (24%), Positives = 54/155 (34%), Gaps = 30/155 (19%)
Query: 664 AQKEGFRLQDVTSAKLAQRRKNKNVSNDNSRSFSSTSSSLSSSSSGTSSLKTPCSSTQPS 723
AQK G L+ V R N N +SR+ S S+S S S TP S +
Sbjct: 445 AQKYGLSLKQVI------ERLNVNEGRSSSRASPSHSTSTIPYSPPQSGRSTPTSILRQR 498
Query: 724 VP------SKPVKRINKDASSGTVFDFAEARVQEY------LSSLSSSSSSEHGTSPPSS 771
P S V D++ D E + +Y L +H SP S
Sbjct: 499 TPIRSNSRSSSVSFSQGDSNRSHYSD--ETNISDYSYPMADLDLEDEEPMEDHPHSPQSI 556
Query: 772 STI--------QLQLSPVRKKKKPDLTLPASNKAE 798
S+ LQ S R + P + +S + +
Sbjct: 557 SSNNSMSRTSRALQNSQRR--RPPTMFPSSSERQQ 589
>gnl|CDD|226380 COG3862, COG3862, Uncharacterized protein with conserved CXXC pairs
[Function unknown].
Length = 117
Score = 31.3 bits (71), Expect = 0.67
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 267 LKTEPPIPEDLSPDVADFISRLLVKDPRRR 296
+KTE PIP++L P++ +SRL V P +
Sbjct: 64 VKTEKPIPKELIPELMKELSRLKVGAPVKI 93
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 33.2 bits (76), Expect = 0.73
Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 26/133 (19%)
Query: 757 SSSSSSEHGTSPPSSS---TIQLQLSPVRKKKKPDLTLPASNKAESEQLHLAEPSTLAGT 813
S + SSE SP S + L K+++ P+ ++ E+E+
Sbjct: 77 SPALSSERLLSPSPSVLDLSPVLASPQTGKRRRSS--SPSDDEDEAERPS---------- 124
Query: 814 KRKHKPDTSSQCSKSLPATHSTPARKKKKADRQPAK--QEEKQPVPQTTPPTDLVTLFEE 871
KR SS S + P P+ PA Q+E PT ++
Sbjct: 125 KRPRSDSISSSSSPAKPPEACLPS---------PAASTQDELSEASAAPLPTPSLSPPHT 175
Query: 872 QLLGPITRARRRT 884
+ R+R
Sbjct: 176 PTDTAPSGKRKRR 188
>gnl|CDD|132697 TIGR03658, IsdH_HarA, haptoglobin-binding heme uptake protein HarA.
HarA is a heme-binding NEAT-domain (NEAr Transporter,
pfam05031) protein which has been shown to bind to the
haptoglobin-hemoglobin complex in order to extract heme
from it. HarA has also been reported to bind hemoglobin
directly. HarA (also known as IsdH) contains three NEAT
domains as well as a sortase A C-terminal signal for
localization to the cell wall. The heme bound at the
third of these NEAT domains has been shown to be
transferred to the IsdA protein also localized at the
cell wall, presumably through an additional specific
protein-protein interaction. Haptoglobin is a hemoglobin
carrier protein involved in scavenging hemoglobin in the
blood following red blood cell lysis and targetting it
to the liver.
Length = 895
Score = 32.9 bits (74), Expect = 0.92
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 16/143 (11%)
Query: 688 VSNDNSRSFSSTSSSLSSSSSGTSSLKT----PCSSTQPSVPSKPVKRINKD-ASSGTVF 742
V+ND S S +S ++ ++S+ TS++ P ++T S P++P N D ASS
Sbjct: 239 VTNDQSSSDASNQTNTNTSNQNTSTINNANNQPQATTNMSQPAQPKSSANADQASSQPAH 298
Query: 743 DFAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQL---SPVRKKKKPDLTLP-----AS 794
+ ++ SS+ S + PP+ ++Q + + + K+ D P +
Sbjct: 299 ETNSNGNTNDKTNESSNQSDVNQQYPPADESLQDAIKNPAIIDKEHTADNWRPIDFQMKN 358
Query: 795 NKAESEQLHLA---EPSTLAGTK 814
+K E + H A EP+T+ TK
Sbjct: 359 DKGERQFYHYASTVEPATVIFTK 381
>gnl|CDD|178145 PLN02530, PLN02530, histidine-tRNA ligase.
Length = 487
Score = 32.8 bits (75), Expect = 0.93
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 675 TSAKLAQRRKNKNVSNDNSRSFSSTSSSLS-SSSSGTSSLKTPCSSTQPSVPSKPVKRIN 733
SA +R S + +S+ ++S+ ++ ++ PSV +I+
Sbjct: 10 VSASAIRRPSLPLSSRCSFLLSASSPRGGRCAASAAAGGGRSGGTTAPPSVQEDGKPKID 69
Query: 734 KDASSGTVFDFA--EARVQEYL 753
+ GT DF + R++ +L
Sbjct: 70 VNPPKGTR-DFPPEDMRLRNWL 90
>gnl|CDD|235369 PRK05231, PRK05231, homoserine kinase; Provisional.
Length = 319
Score = 32.5 bits (75), Expect = 1.1
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 17/76 (22%)
Query: 457 ELLDRIRQKGRCGFTENEASRIMRQLVAA-VHFMHS-------RGVVHRDLKPENLLFSD 508
EL R+ F +E + ++ +AA + F+ S RGV+H DL +N+LF
Sbjct: 149 ELAPRLLP-----FLADEQAALLEAELAAQLAFLASAAWPALPRGVIHADLFRDNVLF-- 201
Query: 509 PAGDNIK-VVDFGFAC 523
GD + +DF FAC
Sbjct: 202 -EGDRLSGFIDFYFAC 216
>gnl|CDD|214801 smart00750, KIND, kinase non-catalytic C-lobe domain. It is an
interaction domain identified as being similar to the
C-terminal protein kinase catalytic fold (C lobe). Its
presence at the N terminus of signalling proteins and
the absence of the active-site residues in the catalytic
and activation loops suggest that it folds independently
and is likely to be non-catalytic. The occurrence of
KIND only in metazoa implies that it has evolved from
the catalytic protein kinase domain into an interaction
domain possibly by keeping the substrate-binding
features.
Length = 176
Score = 31.6 bits (72), Expect = 1.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 574 GYDENCDLWSLGVILYTMLCGRVPFH 599
Y E D++SLG+ LY L +P++
Sbjct: 80 SYTEKADIYSLGITLYEALDYELPYN 105
Score = 28.9 bits (65), Expect = 8.6
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 21/112 (18%)
Query: 456 GELLDRIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIK 515
L D + +GR E E + Q + A+ +H + L + L
Sbjct: 1 VSLADILEVRGRP-LNEEEIWAVCLQCLGALRELHRQAKSGNILLTWDGL---------- 49
Query: 516 VVDFGFACLKRE--SLHTPCFTLQYAAPEVL-RQDKSGYDENCDLWSLGVIL 564
+ G K S P F APEV+ Q Y E D++SLG+ L
Sbjct: 50 LKLDGSVAFKTPEQSRPDPYFM----APEVIQGQS---YTEKADIYSLGITL 94
>gnl|CDD|219071 pfam06525, SoxE, Sulfocyanin (SoxE). This family consists of
several archaeal sulfocyanin (or blue copper protein)
sequences from a number of Sulfolobus species.
Length = 195
Score = 31.7 bits (72), Expect = 1.2
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 697 SSTSSSLSSSSSGTSSLKTPCSSTQPSVPSKPVKRINKDASSGTVFDFAEARVQEYLSSL 756
+ T ++ S SS TS+ T S+T P P + D+S+ TVF YL L
Sbjct: 22 TKTYNTTSMLSSPTSTSTTSSSTTLP--PGA--ITLPYDSSNKTVF--------IYLVVL 69
Query: 757 SSSSSSE-HGTS 767
S+ + +GTS
Sbjct: 70 STGPTFNFNGTS 81
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CCK4,
also called protein tyrosine kinase 7 (PTK7), is an
orphan receptor tyr kinase (RTK) containing an
extracellular region with seven immunoglobulin domains,
a transmembrane segment, and an intracellular inactive
pseudokinase domain. Studies in mice reveal that CCK4 is
essential for neural development. Mouse embryos
containing a truncated CCK4 die perinatally and display
craniorachischisis, a severe form of neural tube defect.
The mechanism of action of the CCK4 pseudokinase is
still unknown. Other pseudokinases such as HER3 rely on
the activity of partner RTKs.
Length = 275
Score = 32.1 bits (73), Expect = 1.3
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 32/188 (17%)
Query: 407 AVKIISRKID---CSE---EINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLD 460
VK + + D SE E+++ R H N+V L + ++ Y++LE G+L
Sbjct: 39 LVKALQKTKDENLQSEFRRELDMFRKLS-HKNVVRLLGLCREAEPHYMILEYTDLGDLKQ 97
Query: 461 RIRQKGRCGFTENEASRIMRQLVAAVHFMHSRGV--------VHRDLKPENLLFSDPAGD 512
+R +Q VA + + G+ VHRDL N L S +
Sbjct: 98 FLRATKSKDEKLKPPPLSTKQKVALCTQI-ALGMDHLSNARFVHRDLAARNCLVS--SQR 154
Query: 513 NIKVVDFGFA--------CLKRESLHTPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVIL 564
+KV + R +L L++ APE +++D + D+WS GV++
Sbjct: 155 EVKVSLLSLSKDVYNSEYYKLRNAL----IPLRWLAPEAVQEDD--FSTKSDVWSFGVLM 208
Query: 565 VNVLRQDK 572
V Q +
Sbjct: 209 WEVFTQGE 216
>gnl|CDD|131667 TIGR02618, tyr_phenol_ly, tyrosine phenol-lyase. This model
describes a group of tyrosine phenol-lyase (4.1.99.2)
(beta-tyrosinase), a pyridoxal-phosphate enzyme closely
related to tryptophanase (4.1.99.1) (see model
TIGR02617). Both belong to the beta-eliminating lyase
family (pfam01212) [Energy metabolism, Amino acids and
amines].
Length = 450
Score = 32.2 bits (73), Expect = 1.5
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 1 MSTREERERREREGAEK----KNKKTRIDLLSNPWTNG-CDVSSTPLMTPDILLGSSNQR 55
M+TREERE++ +E ++ IDLL++ TN D LM D S
Sbjct: 14 MTTREEREKKMQEAGYNTFLLNSEDVYIDLLTDSGTNAMSDKQWAGLMMGDEAYAGSRNF 73
Query: 56 SEKRRRTRREGGYSYVSPSVL--FSENIISNEIFQP 89
R R G+ YV P+ +EN++S +P
Sbjct: 74 YHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKP 109
>gnl|CDD|223554 COG0478, COG0478, RIO-like serine/threonine protein kinase fused to
N-terminal HTH domain [Signal transduction mechanisms].
Length = 304
Score = 31.9 bits (73), Expect = 1.5
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 24/89 (26%)
Query: 434 VNLHCVFQDEVHTYLVLELLKGGELLDRIRQKGRCGFTENEAS---RIMRQLVAAVHFMH 490
N H V V+E ++G EL R+R EN +I+ ++ A
Sbjct: 179 WNRHAV---------VMEYIEGVELY-RLRLD-----VENPDEILDKILEEVRKAYR--- 220
Query: 491 SRGVVHRDLKPENLLFSDPAGDNIKVVDF 519
RG+VH DL N+L ++ I V+D+
Sbjct: 221 -RGIVHGDLSEFNILVTEDGD--IVVIDW 246
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 32.4 bits (73), Expect = 1.6
Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 18/207 (8%)
Query: 672 QDVTSAKLAQRRKNKNVSNDNSRSFSSTSSSLSS---------SSSGTSSLKTPCSSTQP 722
V +A Q + V+N N+ +S S L+S SS TS SS+
Sbjct: 547 TSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHS 606
Query: 723 SVPSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQL----QL 778
+ S + E +E S S++ S P +T Q+
Sbjct: 607 TPRSN--STSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNS 664
Query: 779 SPVRKKKKPDLT--LPASNKAESEQLHLAEPSTLAGTKRKHKPDTSSQCSKSLPATHSTP 836
S R + +T +P N + + T K +++++ + ST
Sbjct: 665 STSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTS 724
Query: 837 ARKKKKADRQPAKQEEKQPVPQTTPPT 863
+ A R +P +T
Sbjct: 725 PHTNEGAFR-TTPYNATTYLPPSTSSK 750
>gnl|CDD|149133 pfam07892, DUF1667, Protein of unknown function (DUF1667).
Hypothetical archaeal and bacterial proteins make up
this family. A few proteins are annotated as being
potential metal-binding proteins, and in fact the
members of this family have four highly conserved
cysteine residues, but no further literature evidence
was found in this regard.
Length = 82
Score = 29.4 bits (67), Expect = 1.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 268 KTEPPIPEDLSPDVADFISRLLVKDP 293
KT PIP++L + + +L+VK P
Sbjct: 35 KTSKPIPKELIFECMKELKKLVVKAP 60
>gnl|CDD|221321 pfam11928, DUF3446, Domain of unknown function (DUF3446). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 80 to 99 amino acids in length. This domain is
found associated with pfam00096. This domain has a
single completely conserved residue P that may be
functionally important.
Length = 84
Score = 29.4 bits (66), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 688 VSNDNSRSFSSTSSSLSSSSSGTSSLKTPCSSTQPS 723
+SN S S+SSS SSSSS + L ++PS
Sbjct: 30 MSNPPPSSSPSSSSSSSSSSSQSPPLSCSVHQSEPS 65
>gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional.
Length = 1467
Score = 32.0 bits (72), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 737 SSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSSST 773
S F F A++Q LS+ SS ++ T PPSSS+
Sbjct: 1214 SGTNTFTFKAAQLQ--LSAASSPPAATTPTPPPSSSS 1248
>gnl|CDD|236613 PRK09693, PRK09693, Cascade antiviral complex protein; Validated.
Length = 489
Score = 31.7 bits (72), Expect = 1.9
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 906 ELLDRIRQKGRCGFTENE-ASRI--MRQLVAAVH----FMHSRGVVHRDLKPENLLLSGI 958
EL DRI TE+E I + H FM ++GVV +D+ P LL+G+
Sbjct: 66 ELKDRIMN----PLTEDEFEEGIAPWIDMFDLNHPEQPFMQTKGVVAKDVTPMTKLLAGL 121
Query: 959 SG 960
G
Sbjct: 122 EG 123
>gnl|CDD|148820 pfam07432, Hc1, Histone H1-like protein Hc1. This family consists
of several bacterial histone H1-like Hc1 proteins. In
Chlamydia, Hc1 is expressed in the late stages of the
life cycle, concomitant with the reorganisation of
chlamydial reticulate bodies into elementary bodies.
This suggests that Hc1 protein plays a role in the
condensation of chromatin during intracellular
differentiation.
Length = 123
Score = 30.1 bits (67), Expect = 2.1
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 784 KKKPDLTLPASNKAESEQLHLAEPSTLAGTKRKHKPDTSSQCSKSLPATHSTPARKKKKA 843
KKKP P + KA + + K P ++ K+ PAT T A+K KK
Sbjct: 62 KKKPAKKAPKAAKAP------KKAAKAPAKKAAAAPAKKAKAVKAKPATKKTAAKKVKKM 115
Query: 844 DRQPA 848
++ +
Sbjct: 116 SKKRS 120
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
DDR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of
the ligand, collagen, to DDRs results in a slow but
sustained receptor activation. DDRs regulate cell
adhesion, proliferation, and extracellular matrix
remodeling. They have been linked to a variety of human
cancers including breast, colon, ovarian, brain, and
lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 296
Score = 31.5 bits (72), Expect = 2.2
Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 31/181 (17%)
Query: 407 AVKII------SRKIDCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGELLD 460
AVK++ + + D +E+ +L PNI L V + +++E ++ G+L
Sbjct: 50 AVKVLRPDASDNAREDFLKEVKILSRLS-DPNIARLLGVCTVDPPLCMIMEYMENGDLNQ 108
Query: 461 RIRQKGRCGFTENEASR---------IMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAG 511
+++ S+ + Q+ + + ++ S VHRDL N L
Sbjct: 109 FLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVG--KN 166
Query: 512 DNIKVVDFGFACLKRESLHTPCFTLQYAAPEVLR--------QDKSGYDENCDLWSLGVI 563
IK+ DFG + R + + +Q AP +R K + D+W+ GV
Sbjct: 167 YTIKIADFG---MSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGK--FTTKSDVWAFGVT 221
Query: 564 L 564
L
Sbjct: 222 L 222
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 31.4 bits (72), Expect = 2.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 489 MHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFA 522
+H G+VH DL N + D D + ++DFG
Sbjct: 444 LHKAGIVHGDLTTSNFIVRD---DRLYLIDFGLG 474
>gnl|CDD|216974 pfam02325, YGGT, YGGT family. This family consists of a repeat
found in conserved hypothetical integral membrane
proteins. The function of this region and the proteins
which possess it is unknown.
Length = 75
Score = 29.0 bits (66), Expect = 2.5
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 17/68 (25%)
Query: 240 SLIIFFIILSFTLSFIH-DYYHIQYRRILK-TEPP-------IPE----DLSPDVA---- 282
++ IF +I+ LS++ D Y+ + + + TEP IP DLSP VA
Sbjct: 6 NIYIFLLIIRVILSWVPADPYNPIVQFLYRLTEPLLRPFRRIIPPIGGIDLSPIVAFLLL 65
Query: 283 DFISRLLV 290
F+ LL+
Sbjct: 66 QFLQILLL 73
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 30.7 bits (70), Expect = 2.6
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 797 AESEQLHLAEPSTLAGTKRKHKPDTSSQCSKSLPATHSTPARKKKKADRQPAKQEEKQPV 856
E + L E +R + + + + K KA R+ K ++P
Sbjct: 96 VEHARKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPE 155
Query: 857 PQTTPPTDLVTL 868
PQ TP +D+ L
Sbjct: 156 PQHTPVSDISEL 167
>gnl|CDD|204766 pfam11877, DUF3397, Protein of unknown function (DUF3397). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 114 to 128 amino acids in
length.
Length = 116
Score = 29.5 bits (67), Expect = 2.7
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 235 VFFSSSLI----IFFIILSFTLSFIHDYYH--IQYRRILKT 269
V F+ SL+ +F +L+ ++ I YR+ K
Sbjct: 53 VLFTHSLLPYLLLFLSLLAIIITLFQARKKKEIYYRKFFKL 93
>gnl|CDD|219288 pfam07077, DUF1345, Protein of unknown function (DUF1345). This
family consists of several hypothetical bacterial
proteins of around 230 residues in length. The function
of this family is unknown.
Length = 181
Score = 30.7 bits (70), Expect = 2.7
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 244 FFIILSFTLSFIHDYYHIQYRRILKTEPPI--PEDLSPDVADFI 285
+ F L + H YY E + P + PD DF+
Sbjct: 98 LLVHTIFALHYAHLYYQ---AGAGGDEGGLDFPGEEEPDYWDFL 138
>gnl|CDD|148443 pfam06836, DUF1240, Protein of unknown function (DUF1240). This
family consists of a number of hypothetical putative
membrane proteins which seem to be specific to Yersinia
pestis. The function of this family is unknown.
Length = 95
Score = 29.2 bits (66), Expect = 2.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 220 DEVIDWDDFSRGIECVFFSSSLIIFFIILSFTLSFIHDYYHIQYRRILK 268
D++ FS + +FFSS L+ +F +LSF S I + + +K
Sbjct: 1 DKIT----FSWSVFIIFFSSPLLFYFSVLSF-YSAIKNKPPKHNDKFVK 44
>gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle.
Length = 519
Score = 31.4 bits (70), Expect = 3.0
Identities = 36/152 (23%), Positives = 53/152 (34%), Gaps = 13/152 (8%)
Query: 711 SSLKTPCSSTQPSVPSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPS 770
+S+ T Q + P P K +G +A VQE S S SE + P+
Sbjct: 339 ASVPTKGPLGQGTAPVPPGK-------TGPAVAQVKAEVQEDSESSEEESDSEEAAATPA 391
Query: 771 SSTIQLQLSPVRKKKKPDLTLPASNKAESE-QLHLAEPSTLAGTKRKHKP--DTSSQCSK 827
++ + P PA A + ++ A + K KP T +
Sbjct: 392 QVKTSVKTPQAKANPAPTRAPPAKGAASAPGKVVAAAAQAKQRSPAKVKPPVRTLQNSTV 451
Query: 828 SLPATHSTPARKKKKADRQPAKQEEKQPVPQT 859
S+ S PA K A A Q + PV T
Sbjct: 452 SVRGQRSVPAVGKAVA---AAAQAQPGPVKGT 480
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional.
Length = 459
Score = 31.1 bits (70), Expect = 3.1
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 669 FRLQDVTSAKLAQRRKNKNVS---NDNSRSFSSTSSSLSSSSSGTSSLKTPCSST---QP 722
F Q + A A+ N N + + NS+SF S SSS T S+ P ++
Sbjct: 243 FPFQQLNYASNARLSTNPNPTLWFSQNSKSFEMNS---EFSSSMTPSILPPSVTSSFLPT 299
Query: 723 SVPSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQ 777
+ KP + D S F R E + S++S+S +G SSS+I+LQ
Sbjct: 300 PMSYKPSISLPSDNPSIPSFTVNGVRNWE-AGAFSNNSNSSNG----SSSSIELQ 349
>gnl|CDD|227404 COG5072, ALK1, Serine/threonine kinase of the haspin family [Cell
division and chromosome partitioning].
Length = 488
Score = 31.0 bits (70), Expect = 3.2
Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 18/141 (12%)
Query: 672 QDVTSAKLAQRRKNKNVSNDNSRSFSSTSSSLSSSSSGTSSLK-TPCSSTQP-------- 722
+ K +N+ N + SS+ S+ S S TSS K
Sbjct: 23 ISARLDERPCALKPRNIEN-SGSQLSSSLESIHSKPSKTSSSKWNFWKKKGSYPENELLA 81
Query: 723 -----SVPSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQ 777
SV + +D +S T+ E L + + SSS + S LQ
Sbjct: 82 KSSFSSVHTVIFPAGPRDEASKTIVSKKEV---TNLLNHKALSSSLSNSLKHKPSHRSLQ 138
Query: 778 LSPVRKKKKPDLTLPASNKAE 798
R+K + + K
Sbjct: 139 KVKQRRKGPFSQFVNSQTKKI 159
>gnl|CDD|240158 cd05119, RIO, RIO kinase family, catalytic domain. The RIO kinase
catalytic domain family is part of a larger superfamily,
that includes the catalytic domains of other kinases
such as the typical serine/threonine/tyrosine protein
kinases (PKs), aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase (PI3K).
RIO kinases are atypical protein serine kinases present
in archaea, bacteria and eukaryotes. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. RIO
kinases contain a kinase catalytic signature, but
otherwise show very little sequence similarity to
typical PKs. The RIO catalytic domain is truncated
compared to the catalytic domains of typical PKs, with
deletions of the loops responsible for substrate
binding. Most organisms contain at least two RIO
kinases, RIO1 and RIO2. A third protein, RIO3, is
present in multicellular eukaryotes. In yeast, RIO1 and
RIO2 are essential for survival. They function as
non-ribosomal factors necessary for late 18S rRNA
processing. RIO1 is also required for proper cell cycle
progression and chromosome maintenance. The biological
substrates for RIO kinases are still unknown.
Length = 187
Score = 30.1 bits (69), Expect = 3.4
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 448 LVLELLKGGE----LLDRIRQKGRCGFTENEASRIMRQLVAAVHFM-HSRGVVHRDLKPE 502
LV+E + G L +R + + Q++ + + G+VH DL
Sbjct: 92 LVMEFIGGDGIPAPRLKDVRL-------LEDPEELYDQILELMRKLYREAGLVHGDLSEY 144
Query: 503 NLLFSDPAGDNIKVVDFG 520
N+L D + ++D
Sbjct: 145 NILVDD---GKVYIIDVP 159
>gnl|CDD|236400 PRK09188, PRK09188, serine/threonine protein kinase; Provisional.
Length = 365
Score = 30.9 bits (70), Expect = 3.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 484 AAVHFMHSRGVVHRDL-KPENLLFSDPAGDNIKVVDFGFA-CLKRES 528
A+ +H G+ H DL KP+N L V+DF A +R
Sbjct: 122 RALRDLHRAGITHNDLAKPQNWLMG--PDGEAAVIDFQLASVFRRRG 166
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 30.6 bits (69), Expect = 3.7
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 408 VKIISRKIDCSEEINLLRACQGHPNIVNLHCVFQDEVHTYLVLELLKGGEL---LDRIRQ 464
+KI+SR D PNI+ L V ++ E ++ G+L L R
Sbjct: 70 IKIMSRLKD--------------PNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEP 115
Query: 465 KGRCGFTENEASR------IMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDN--IKV 516
+ + + Q+ + + ++ S VHRDL N L G N IK+
Sbjct: 116 QEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCL----VGKNYTIKI 171
Query: 517 VDFGFA 522
DFG +
Sbjct: 172 ADFGMS 177
>gnl|CDD|225719 COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr
protein kinases [General function prediction only].
Length = 351
Score = 30.8 bits (70), Expect = 3.7
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 492 RGVVHRDLKPENLLFSDPAG--DNIKVVDF 519
+ +VHRD NL+++ D + V+DF
Sbjct: 200 KVLVHRDFHSRNLMWTADRAGADRVGVLDF 229
>gnl|CDD|240172 cd05151, ChoK, Choline Kinase (ChoK). The ChoK subfamily is part of
a larger superfamily that includes the catalytic domains
of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). It is composed of
bacterial and eukaryotic choline kinases, as well as
eukaryotic ethanolamine kinase. ChoK catalyzes the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to its substrate, choline, producing phosphorylcholine
(PCho), a precursor to the biosynthesis of two major
membrane phospholipids, phosphatidylcholine (PC), and
sphingomyelin (SM). Although choline is the preferred
substrate, ChoK also shows substantial activity towards
ethanolamine and its N-methylated derivatives. Bacterial
ChoK is also referred to as licA protein. ETNK catalyzes
the transfer of the gamma-phosphoryl group from CTP to
ethanolamine (Etn), the first step in the CDP-Etn
pathway for the formation of the major phospholipid,
phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK
shows specific activity for its substrate and displays
negligible activity towards N-methylated derivatives of
Etn. ChoK plays an important role in cell signaling
pathways and the regulation of cell growth.
Length = 170
Score = 29.9 bits (68), Expect = 3.9
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 476 SRIMRQLVAAVHFMHSRGVV--HRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPC 533
+I + L+ +H +V H DL P N L D + ++D+ +A ++ P
Sbjct: 90 EKIAK-LLKKLHSSPLPDLVPCHNDLLPGNFLLDD---GRLWLIDWEYA-----GMNDPL 140
Query: 534 FTL 536
F L
Sbjct: 141 FDL 143
>gnl|CDD|223833 COG0762, COG0762, Predicted integral membrane protein [Function
unknown].
Length = 96
Score = 28.7 bits (65), Expect = 4.5
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 13/62 (20%)
Query: 241 LIIFFIILSFTLSFIHDYYHIQYRRILK--TEPP-------IPE----DLSPDVADFISR 287
I +I + F R+L TEP IP D SP VA I +
Sbjct: 21 YIFLLLIRALLSWFPPAGETNPIGRLLAQLTEPLLRPFRRLIPPLGGIDFSPIVALLILQ 80
Query: 288 LL 289
L
Sbjct: 81 FL 82
>gnl|CDD|234428 TIGR03979, His_Ser_Rich, His-Xaa-Ser repeat protein HxsA. Members
of this protein share two defining regions. One is a
histidine/serine-rich cluster, typically
H-R-S-H-S-S-H-R-S-H-S-S-H. Members are found always in
the context of a pair of radical SAM proteins, HxsB and
HxsC, and a fourth protein HxsD. The system is predicted
to perform peptide modifications, likely in the
His-Xaa-Ser region, to produce some uncharacterized
natural product.
Length = 186
Score = 29.8 bits (67), Expect = 4.6
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 20/84 (23%)
Query: 689 SNDNSRSFSSTSSSLSSSSSGTSSLKTPCSSTQPSVPSKPVKRINKDASSGTVFDFAEAR 748
S+ + RS SS SS S + G+ S+ + +ST S PV S
Sbjct: 55 SHSSHRSHSSHSSH-YSGAGGSYSVPSGDTST----YSYPV----PSPSYSPS------- 98
Query: 749 VQEYLSSLSSSSSSEHGTSPPSSS 772
S S S G P SS+
Sbjct: 99 ----PGSSIQSLPSTTGVRPQSSA 118
>gnl|CDD|226699 COG4248, COG4248, Uncharacterized protein with protein kinase and
helix-hairpin-helix DNA-binding domains [General
function prediction only].
Length = 637
Score = 30.4 bits (68), Expect = 5.2
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 21/104 (20%)
Query: 477 RIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPA------GDNIKVVDFG--FACLKRES 528
R+ R L +A +H G V D+ + L SD + D+ ++ G C
Sbjct: 121 RVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSDSFQINANGTLHLC----- 175
Query: 529 LHTPCFTLQYAAPEVLRQDKS----GYDENCDLWSLGVILVNVL 568
P ++ PE L+ S N D + L V++ ++L
Sbjct: 176 ---PVGVSEFTPPE-LQTLPSFVGFERTANHDNFGLAVLIFHLL 215
>gnl|CDD|182645 PRK10682, PRK10682, putrescine transporter subunit:
periplasmic-binding component of ABC superfamily;
Provisional.
Length = 370
Score = 30.2 bits (68), Expect = 5.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 67 GYSYVSPSVLFSENIISNEIFQPSLDKR--PNTSNL 100
G+ V PS F E ++ +FQP LDK PN NL
Sbjct: 78 GFDLVVPSASFLERQLTAGVFQP-LDKSKLPNWKNL 112
>gnl|CDD|234975 PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase;
Reviewed.
Length = 239
Score = 29.9 bits (68), Expect = 6.2
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 480 RQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDF 519
+ + + H GV H DL N+L DP G ++DF
Sbjct: 149 QAIGQLIARFHDAGVYHADLNAHNILL-DPDG-KFWLIDF 186
>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 1. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
1 (DDR1) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR1 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR1 binds to all collagens tested to date (types I-IV).
It is widely expressed in many tissues. It is abundant
in the brain and is also found in keratinocytes, colonic
mucosa epithelium, lung epithelium, thyroid follicles,
and the islets of Langerhans. During embryonic
development, it is found in the developing
neuroectoderm. DDR1 is a key regulator of cell
morphogenesis, differentiation and proliferation. It is
important in the development of the mammary gland, the
vasculator and the kidney. DDR1 is also found in human
leukocytes, where it facilitates cell adhesion,
migration, maturation, and cytokine production.
Length = 304
Score = 29.9 bits (67), Expect = 6.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 481 QLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDN--IKVVDFGFA 522
Q+ + + ++ S VHRDL N L G+N IK+ DFG +
Sbjct: 146 QIASGMKYLSSLNFVHRDLATRNCL----VGENLTIKIADFGMS 185
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl is a member of the
Axl subfamily, which is composed of receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl is widely expressed in a
variety of organs and cells including epithelial,
mesenchymal, hematopoietic, as well as non-transformed
cells. Axl signaling is important in many cellular
functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and
lung carcinomas.
Length = 272
Score = 29.6 bits (66), Expect = 6.9
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 477 RIMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPAGDNIKVVDFGFACLKRESLHTPCFTL 536
+ M + + + ++ S+ +HRDL N + ++ N+ V DFG + + ++ +
Sbjct: 116 KFMTDIASGMEYLSSKSFIHRDLAARNCMLNENM--NVCVADFGLS----KKIYNGDYYR 169
Query: 537 Q---------YAAPEVLRQDKSGYDENCDLWSLGVILVNVLRQDKSGYD--ENCDLW 582
Q + A E L D+ Y D+WS GV + + + ++ Y EN +++
Sbjct: 170 QGRIAKMPVKWIAIESL-ADRV-YTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIY 224
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 29.7 bits (66), Expect = 7.1
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 797 AESEQLHLAEPSTLAGTKRKHKPDTSSQCSKSLPATHSTPARKKKKADRQPA----KQEE 852
A + Q + T + S S S P ++++K+ A KQE+
Sbjct: 66 ANTRQERTPKLEKAPNT-------NEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQ 118
Query: 853 KQPVPQTTPPTDLVT 867
Q ++T P VT
Sbjct: 119 SQTTTESTTPKTKVT 133
Score = 29.7 bits (66), Expect = 8.1
Identities = 26/153 (16%), Positives = 63/153 (41%), Gaps = 5/153 (3%)
Query: 697 SSTSSSLSSSSSGTSSLKTPCSSTQPSVPSKPVKRINKDASSGTVFDFAEARVQEYLSSL 756
++ + ++++ S +++ P++ ++ + IN A + + A QE L
Sbjct: 17 TTGAITVTTQSVKAEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKL 76
Query: 757 SSSSSSEHGTSPPSSSTIQLQLSPVRKKKKPDLTLPASNKAESEQLHLAEPSTLAGTKRK 816
+ ++ + S ++S +++++ L + A+ + EQ ST TK
Sbjct: 77 EKAPNTNEEKTSASKIE---KISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVT 133
Query: 817 HKPDTSSQ--CSKSLPATHSTPARKKKKADRQP 847
P T++ + T +P K+ + D P
Sbjct: 134 TPPSTNTPQPMQSTKSDTPQSPTIKQAQTDMTP 166
>gnl|CDD|188441 TIGR03926, T7_EssB, type VII secretion protein EssB. Members of
this family are associated with type VII secretion of
WXG100 family targets in the Firmicutes, but not in the
Actinobacteria. This protein is designated YukC in
Bacillus subtilis and EssB is Staphylococcus aureus
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 377
Score = 30.0 bits (68), Expect = 7.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 470 FTENEASRIMRQLVAAVHFMHSRGVVHRDLKPENLLFSD 508
T NE R+ L ++SR + L PENL+F+
Sbjct: 75 KTRNEKLRLALNLADLEEHLNSR--LTFILHPENLVFTK 111
>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Axl subfamily; catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). The Axl subfamily
consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and
similar proteins. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with two
immunoglobulin-like domains followed by two fibronectin
type III repeats, a transmembrane segment, and an
intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl subfamily members are
implicated in a variety of cellular effects including
survival, proliferation, migration, and phagocytosis.
They are also associated with several types of cancer as
well as inflammatory, autoimmune, vascular, and kidney
diseases. Mer is named after its original reported
expression pattern (monocytes, epithelial, and
reproductive tissues). It is required for the ingestion
of apoptotic cells by phagocytes such as macrophages,
retinal pigment epithelial cells, and dendritic cells.
Mer is also important in maintaining immune homeostasis.
Length = 273
Score = 29.8 bits (67), Expect = 7.5
Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 25/159 (15%)
Query: 385 ILGDGSYSVCRRC---VEKSTGQEYAVKIISRKIDCSEEI-NLLR--ACQ---GHPNIVN 435
ILG+G + + + + AVK + I EI L AC HPN++
Sbjct: 6 ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMK 65
Query: 436 LHCV-FQDEVHTYL-----VLELLKGGEL---LDRIRQKGRC-GFTENEASRIMRQLVAA 485
L V F+ + +L +K G+L L R G + M +
Sbjct: 66 LIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG 125
Query: 486 VHFMHSRGVVHRDLKPENLLFSDPAGDNIKVV--DFGFA 522
+ ++ +R +HRDL N + +++ V DFG +
Sbjct: 126 MEYLSNRNFIHRDLAARNCMLR----EDMTVCVADFGLS 160
>gnl|CDD|218825 pfam05956, APC_basic, APC basic domain. This region of the APC
family of proteins is known as the basic domain. It
contains a high proportion of positively charged amino
acids and interacts with microtubules.
Length = 359
Score = 29.7 bits (66), Expect = 7.6
Identities = 37/183 (20%), Positives = 58/183 (31%), Gaps = 29/183 (15%)
Query: 694 RSFSSTSSSLSSSSSGTSSLKTPCSSTQPSVP----------SKPVKRINKDASSGTVFD 743
R+ + S S T S K P TQPS P S+ + R K + +
Sbjct: 6 RTVIYIPGPANRSQSTTPSKKGPPLKTQPSDPPKSPSPGQQRSRSLHRPAKPSELAELSP 65
Query: 744 FAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQLSPVRKKKKPDLTLPASNKAESEQLH 803
+ + + SSSS TS PS P+ + N
Sbjct: 66 PPRSATPPARLAKTPSSSSSQ-TSTPS--------QPLPRPLPRPTQSAGRNSILP---- 112
Query: 804 LAEPSTLAGTKRKHKPDTSS-QCSKSLPATHSTPARK--KKKADRQP--AKQEEKQPVPQ 858
++L+ R P + S S T +P R + + P +K +P P+
Sbjct: 113 -GPGNSLSQVPRTSSPARALLASSGSQHKTQKSPVRIPFMQNPAKPPPLSKNASSRPRPE 171
Query: 859 TTP 861
Sbjct: 172 PGS 174
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 29.8 bits (67), Expect = 7.8
Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 19/165 (11%)
Query: 704 SSSSSGTSSLKTPCSSTQPSVPSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSE 763
+G +++ P+ KR + + + + + S +++E
Sbjct: 135 VKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTE 194
Query: 764 HGTSPPSSSTIQLQLSPVRK--------------KKKPDLTLPASNKAESEQLHLAEPST 809
S L+ +P +K KK+ ++ K ESE+
Sbjct: 195 KTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVI 254
Query: 810 LAGTKRKHKPDTSSQCSKSLPATHSTPARKKKKADRQPAKQEEKQ 854
L + + + + P+ ++ ++ + ++E+++
Sbjct: 255 L-----EDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEK 294
>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tyk2 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Tyk2 is widely expressed in
many tissues. It is involved in signaling via the
cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12,
IL-13, and IL-23. It mediates cell surface urokinase
receptor (uPAR) signaling and plays a role in modulating
vascular smooth muscle cell (VSMC) functional behavior
in response to injury. Tyk2 is also important in
dendritic cell function and T helper (Th)1 cell
differentiation. A homozygous mutation of Tyk2 was found
in a patient with hyper-IgE syndrome (HIES), a primary
immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 274
Score = 29.5 bits (66), Expect = 8.0
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 478 IMRQLVAAVHFMHSRGVVHRDLKPENLLFSDPA-GDN----IKVVDFG--FACLKRESLH 530
+ +QL +A+ ++ + +VH ++ +N+L + + IK+ D G F L RE
Sbjct: 122 VAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREE-- 179
Query: 531 TPCFTLQYAAPEVLRQDKSGYDENCDLWSLGVILVNV 567
+ + APE + + D WS G L+ +
Sbjct: 180 -RVERIPWIAPECV-PGGNSLSTAADKWSFGTTLLEI 214
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 29.6 bits (66), Expect = 8.0
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 812 GTKRKHKPDTSSQCSKSLPATHST-------PARKKKKADRQPAKQEEKQPVPQTTPPTD 864
G + +H P + Q + PA T P ++ ++ QPA+Q Q Q P T+
Sbjct: 194 GHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTE 253
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 30.1 bits (68), Expect = 8.4
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 15/112 (13%)
Query: 724 VPSKPVKRINKDASSGTVFDFAEARVQEYLSSLSSSSSSEHGTSPPSSSTIQLQLSPVRK 783
VP KPVKR D D AE L + S+ P ++ Q + +
Sbjct: 358 VPEKPVKRWQVD-------DPAEIS----LPEGQTPSALAAAVQAPHANEPQFVNAAPAE 406
Query: 784 KKKPDLTLPASNK----AESEQLHLAEPSTLAGTKRKHKPDTSSQCSKSLPA 831
KK + + A +E + A+ S + D S+ +L A
Sbjct: 407 KKTALTEQTTAQQQVQAANAEAVAEADASAEPADTVEQALDDESELLAALNA 458
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family,
translational repressor [Translation, ribosomal
structure and biogenesis].
Length = 777
Score = 29.7 bits (67), Expect = 8.6
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 13/155 (8%)
Query: 669 FRLQDVTSAKLAQRRKNKNVSNDNSRSFSSTSSSLSSSSSGTSSLKT----PCSSTQPSV 724
+S + + +S+ S S S SSS + ++S + SSTQ
Sbjct: 69 KITSSSSSRRKPSGSWSVAISSSTSGSQSLLMELPSSSFNPSTSSRNKSNSALSSTQQGN 128
Query: 725 PSKPVKRINKDASSGTVFDFAEARVQEYLSSLS---SSSSSEHGTSPPSSSTIQLQLSPV 781
+ V + ASS +F+ + + S S + S S +P SSS+ L V
Sbjct: 129 ANSSVTLSSSTASS--MFNSNKLPLPNPNHSNSATTNQSGSSFINTPASSSSQPLTNLVV 186
Query: 782 RKKKKPDLTLPASNKAESEQLHLAEPSTLAGTKRK 816
K P +L +PS+ + T
Sbjct: 187 SSIK----RFPYLTSLSPFFNYLIDPSSDSATASA 217
>gnl|CDD|240168 cd05145, RIO1_like, RIO kinase family; RIO1, RIO3 and similar
proteins, catalytic domain. The RIO kinase catalytic
domain family is part of a larger superfamily, that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). RIO
kinases are atypical protein serine kinases containing a
kinase catalytic signature, but otherwise show very
little sequence similarity to typical PKs. Serine
kinases catalyze the transfer of the gamma-phosphoryl
group from ATP to serine residues in protein substrates.
The RIO catalytic domain is truncated compared to the
catalytic domains of typical PKs, with deletions of the
loops responsible for substrate binding. RIO1 is present
in archaea, bacteria and eukaryotes. In addition, RIO3
is present in multicellular eukaryotes. RIO1 is
essential for survival and is required for 18S rRNA
processing, proper cell cycle progression and chromosome
maintenance. The biological substrates for RIO1 are
unknown. The function of RIO3 is also unknown.
Length = 190
Score = 29.0 bits (66), Expect = 8.6
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 469 GFTENEASRIMRQLVAAVHFMHSR-GVVHRDLKPENLLFSDPAGDNIKVVDFG 520
E EA + Q+V + ++ G+VH DL N+L+ D ++D
Sbjct: 113 PLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYHD---GKPYIIDVS 162
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 29.7 bits (67), Expect = 9.1
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 805 AEPSTLAGTKRKHKPDTSSQCSKSLPATHSTPARKKKKADRQPAKQEEKQPVPQTTPPTD 864
A P+ K + ++ A P K AK E P PPT
Sbjct: 123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAA-KPPPTP 181
Query: 865 LVTLFEEQLLGPITRARRRT 884
+ + P++R R+R
Sbjct: 182 VARADPRETRVPMSRMRQRI 201
>gnl|CDD|221583 pfam12449, DUF3684, Protein of unknown function (DUF3684). This
domain family is found in eukaryotes, and is typically
between 1072 and 1090 amino acids in length.
Length = 1084
Score = 29.6 bits (67), Expect = 9.6
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 21/117 (17%)
Query: 673 DVTSAKLAQRRKNKNVSNDNSRSFSSTSSSLSSS-SSGTSSLKTPCSSTQPSVPSKPVKR 731
D T K+ + + + + T+ SL S S T S SS +P K
Sbjct: 59 DATWMKVVEWKPPAGSARREGQRVPDTTGSLRSFFSRLTGS-----SSPPKPKTPEPAKV 113
Query: 732 INKDA-------SSGTVF-DFAEARVQEYLSSLSSSSSSE--HGT--SPPSSSTIQL 776
S+ +VF A +Q +S+S S ++E T PP ++ + +
Sbjct: 114 EENLDAEDLTEISTSSVFLHIFTANIQ---TSVSQSFAAELERATKKPPPKTTKLAI 167
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,969,173
Number of extensions: 4843411
Number of successful extensions: 7776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6727
Number of HSP's successfully gapped: 965
Length of query: 966
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 860
Effective length of database: 6,236,078
Effective search space: 5363027080
Effective search space used: 5363027080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.5 bits)