BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1177
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 214 bits (544), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/253 (46%), Positives = 166/253 (65%), Gaps = 8/253 (3%)
Query: 4 KYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSF 63
Y K ++ T+AE AP+IPISA + NI+VL + I IP P RD ++PR+ V RSF
Sbjct: 156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSF 215
Query: 64 DVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTC-KPIFSRIVSL 122
D+NKPG E+ DLKGGV GG+I++GV KVG EIE+RPG+ K +EG T KP+ ++IVSL
Sbjct: 216 DINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGI--KVTEGNKTFWKPLTTKIVSL 273
Query: 123 FAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRL 182
A L+ A PGGLIGVGT ++P L ++D L G V+G G LP I ++ I +LL R+
Sbjct: 274 AAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRV 333
Query: 183 LGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKI 242
+G + E K++ L EVL++NIG+ +T G + + + D+A I L P+C E+ +++
Sbjct: 334 VGTKEE-----LKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPICAEIGDRV 388
Query: 243 ALSRRVEKHWSWI 255
A+SRRV W I
Sbjct: 389 AISRRVGSRWRLI 401
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 200 bits (509), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/252 (44%), Positives = 156/252 (61%), Gaps = 6/252 (2%)
Query: 4 KYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSF 63
Y K +E TVAE AP+IPISA NI+VL + I IP P RD P+++V+RSF
Sbjct: 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSF 217
Query: 64 DVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLF 123
DVNKPG + L GGV GGSI++G LKVG EIE+RPG V + G++ +PI + IVSL
Sbjct: 218 DVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQ 276
Query: 124 AEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLL 183
A ++ A PGGL+GVGTK++P L + D + G V+G G LP ++ L + HLL+R++
Sbjct: 277 AGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVV 336
Query: 184 GVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIA 243
G E KV+ + R EVLL+N+G+ T G V D ++ L PVC E +++A
Sbjct: 337 GTEQE-----LKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVA 391
Query: 244 LSRRVEKHWSWI 255
+SR++ W I
Sbjct: 392 ISRQIGSRWRLI 403
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/252 (43%), Positives = 157/252 (62%), Gaps = 6/252 (2%)
Query: 4 KYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSF 63
Y K ++ TVAE AP+IPISA NI+VL + I + IP P RD P+++V+RSF
Sbjct: 159 NYRQIKEFIKGTVAENAPIIPISALHGANIDVLVKAIEEFIPTPKRDSNKPPKMLVLRSF 218
Query: 64 DVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLF 123
DVNKPG + L GGV GSI++G LKVG EIE+RPG V + G++ +PI + IVSL
Sbjct: 219 DVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQ 277
Query: 124 AEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLL 183
A ++ A PGGL+G+GTK++P L + D + G V+G G LP ++ +L + HLL+R++
Sbjct: 278 AGGQFVEEAYPGGLVGIGTKLDPYLTKGDLMAGNVVGKPGKLPPVWTDLRLEVHLLERVV 337
Query: 184 GVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIA 243
G E V+ + R EVLL+N+G+ T G V A D ++ L PVC E E++A
Sbjct: 338 GTEQE-----LNVEPIKRKEVLLLNVGTARTMGLVTALGKDEIELKLQIPVCAEPGERVA 392
Query: 244 LSRRVEKHWSWI 255
+SR++ W I
Sbjct: 393 ISRQIGSRWRLI 404
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/252 (44%), Positives = 154/252 (61%), Gaps = 6/252 (2%)
Query: 4 KYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSF 63
Y K +E TVAE AP+IPISA NI+VL + I IP P RD P+ +V+RSF
Sbjct: 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKXLVLRSF 217
Query: 64 DVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLF 123
DVNKPG + L GGV GGSI++G LKVG EIE+RPG V + G++ +PI + IVSL
Sbjct: 218 DVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQ 276
Query: 124 AEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLL 183
A ++ A PGGL+GVGTK++P L + D G V+G G LP ++ L + HLL+R++
Sbjct: 277 AGGQFVEEAYPGGLVGVGTKLDPYLTKGDLXAGNVVGKPGKLPPVWDSLRLEVHLLERVV 336
Query: 184 GVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIA 243
G E KV+ + R EVLL+N+G+ T G V D ++ L PVC E +++A
Sbjct: 337 GTEQE-----LKVEPIKRKEVLLLNVGTARTXGLVTGLGKDEIEVKLQIPVCAEPGDRVA 391
Query: 244 LSRRVEKHWSWI 255
+SR++ W I
Sbjct: 392 ISRQIGSRWRLI 403
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/252 (44%), Positives = 155/252 (61%), Gaps = 6/252 (2%)
Query: 4 KYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSF 63
Y K +E TVAE AP+IPISA NI+VL + I IP P RD P+++V+RSF
Sbjct: 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSF 217
Query: 64 DVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLF 123
DVNKPG + L GGV GSI++G LKVG EIE+RPG V + G++ +PI + IVSL
Sbjct: 218 DVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQ 276
Query: 124 AEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLL 183
A ++ A PGGL+GVGTK++P L + D + G V+G G LP ++ L + HLL+R++
Sbjct: 277 AGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVV 336
Query: 184 GVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIA 243
G E KV+ + R EVLL+N+G+ T G V D ++ L PVC E +++A
Sbjct: 337 GTEQE-----LKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVA 391
Query: 244 LSRRVEKHWSWI 255
+SR++ W I
Sbjct: 392 ISRQIGSRWRLI 403
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 148/242 (61%), Gaps = 7/242 (2%)
Query: 15 TVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDD 74
T AE P+IP+SA K NI+ L E I + I P RD + P ++VIRSFDVNKPG + ++
Sbjct: 173 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNE 232
Query: 75 LKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVP 134
LKGGV GGSI++G+ KV EI+V PGL + +GK++ +PIF++I S+ E + A P
Sbjct: 233 LKGGVIGGSIIQGLFKVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKEAKP 291
Query: 135 GGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGA 194
GGL+ +GT ++P+L +AD L+G ++ A + + I Y+LL+R++G K+
Sbjct: 292 GGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGA-----KEML 346
Query: 195 KVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNE-KIALSRRVEKHWS 253
KV + E L++++GS +T G V + K D ++ L PV N + +SR++ W
Sbjct: 347 KVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWR 406
Query: 254 WI 255
I
Sbjct: 407 MI 408
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 148/242 (61%), Gaps = 7/242 (2%)
Query: 15 TVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDD 74
T AE P+IP+SA K NI+ L E I + I P RD + P ++VIRSFDVNKPG + ++
Sbjct: 167 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNE 226
Query: 75 LKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVP 134
LKGGV GGSI++G+ KV EI+V PGL + +GK++ +PIF++I S+ E + A P
Sbjct: 227 LKGGVIGGSIIQGLFKVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKEAKP 285
Query: 135 GGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGA 194
GGL+ +GT ++P+L +AD L+G ++ A + + I Y+LL+R++G K+
Sbjct: 286 GGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGA-----KEML 340
Query: 195 KVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNE-KIALSRRVEKHWS 253
KV + E L++++GS +T G V + K D ++ L PV N + +SR++ W
Sbjct: 341 KVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWR 400
Query: 254 WI 255
I
Sbjct: 401 MI 402
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 148/242 (61%), Gaps = 7/242 (2%)
Query: 15 TVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDD 74
T AE P+IP+SA K NI+ L E I + I P RD + P ++VIRSFDVNKPG + ++
Sbjct: 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNE 220
Query: 75 LKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVP 134
LKGGV GGSI++G+ KV EI+V PGL + +GK++ +PIF++I S+ E + A P
Sbjct: 221 LKGGVIGGSIIQGLFKVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKEAKP 279
Query: 135 GGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGA 194
GGL+ +GT ++P+L +AD L+G ++ A + + I Y+LL+R++G K+
Sbjct: 280 GGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGA-----KEML 334
Query: 195 KVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNE-KIALSRRVEKHWS 253
KV + E L++++GS +T G V + K D ++ L PV N + +SR++ W
Sbjct: 335 KVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWR 394
Query: 254 WI 255
I
Sbjct: 395 MI 396
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 148/242 (61%), Gaps = 7/242 (2%)
Query: 15 TVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDD 74
T AE P+IP+SA K NI+ L E I + I P RD + P ++VIRSFDVNKPG + ++
Sbjct: 172 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNE 231
Query: 75 LKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVP 134
LKGGV GGSI++G+ KV EI+V PGL + +GK++ +PIF++I S+ E + A P
Sbjct: 232 LKGGVIGGSIIQGLFKVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKEAKP 290
Query: 135 GGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGA 194
GGL+ +GT ++P+L +AD L+G ++ A + + I Y+LL+R++G K+
Sbjct: 291 GGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGA-----KEML 345
Query: 195 KVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNE-KIALSRRVEKHWS 253
KV + E L++++GS +T G V + K D ++ L PV N + +SR++ W
Sbjct: 346 KVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWR 405
Query: 254 WI 255
I
Sbjct: 406 MI 407
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 36 LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95
L + I + IP P+RD + V F + +G VA G I RG +KVG E+
Sbjct: 203 LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEV 254
Query: 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155
E+ V E + T + + + LQ + G +GV + + R +
Sbjct: 255 EI----VGLAPETRRTV------VTGVEMHRKTLQEGIAGDNVGVLLR---GVSREEVER 301
Query: 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRN 202
GQVL G++ + E S ++LK+ G R G G + Q R
Sbjct: 302 GQVLAKPGSITP-HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRT 347
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 36 LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95
L + I + IP P+RD + V F + +G VA G I RG +KVG E+
Sbjct: 202 LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEV 253
Query: 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155
E+ V E + T + + + LQ + G +GV + + R +
Sbjct: 254 EI----VGLAPETRRTV------VTGVEMHRKTLQEGIAGDNVGVLLR---GVSREEVER 300
Query: 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRN 202
GQVL G++ + E S ++LK+ G R G G + Q R
Sbjct: 301 GQVLAKPGSITP-HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRT 346
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 36 LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95
L + I + IP P+RD + V F + +G VA G I RG +KVG E+
Sbjct: 202 LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEV 253
Query: 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155
E+ V E + T + + + LQ + G +GV + + R +
Sbjct: 254 EI----VGLAPETRRTV------VTGVEMHRKTLQEGIAGDNVGVLLR---GVSREEVER 300
Query: 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRN 202
GQVL G++ + E S ++LK+ G R G G + Q R
Sbjct: 301 GQVLAKPGSITP-HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRT 346
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 36 LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95
L + I + IP P+RD + V F + +G VA G I RG +KVG E+
Sbjct: 202 LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEV 253
Query: 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155
E+ V E + T + + + LQ + G +GV + + R +
Sbjct: 254 EI----VGLAPETRKTV------VTGVEMHRKTLQEGIAGDNVGVLLR---GVSREEVER 300
Query: 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRN 202
GQVL G++ + E S ++LK+ G R G G + Q R
Sbjct: 301 GQVLAKPGSITP-HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRT 346
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 36 LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95
L + I + IP P+RD + V F + +G VA G I RG +KVG E+
Sbjct: 202 LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEV 253
Query: 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155
E+ V E + T + + + LQ + G +GV + + R +
Sbjct: 254 EI----VGLAPETRKTV------VTGVEMHRKTLQEGIAGDNVGVLLR---GVSREEVER 300
Query: 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRN 202
GQVL G++ + E S ++LK+ G R G G + Q R
Sbjct: 301 GQVLAKPGSITP-HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRT 346
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 36 LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95
L + I + IP P+RD + V F + +G VA G I RG +KVG E+
Sbjct: 202 LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEV 253
Query: 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155
E+ V E + T + + + LQ + G +GV + + R +
Sbjct: 254 EI----VGLAPETRKTV------VTGVEMHRKTLQEGIAGDNVGVLLR---GVSREEVER 300
Query: 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRN 202
GQVL G++ + E S ++LK+ G R G G + Q R
Sbjct: 301 GQVLAKPGSITP-HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRT 346
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 36 LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95
L + I + IP P+RD + V F + +G VA G I RG +KVG E+
Sbjct: 202 LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEV 253
Query: 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155
E+ V E + T + + + LQ + G +GV + + R +
Sbjct: 254 EI----VGLAPETRKTV------VTGVEMHRKTLQEGIAGDNVGVLLR---GVSREEVER 300
Query: 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRN 202
GQVL G++ + E S ++LK+ G R G G + Q R
Sbjct: 301 GQVLAKPGSITP-HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRT 346
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 36 LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95
L + I + IP P+RD + V F + +G VA G I RG +KVG E+
Sbjct: 202 LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEV 253
Query: 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155
E+ V E + T + + + LQ + G +G+ + + R +
Sbjct: 254 EI----VGLAPETRKTV------VTGVEMHRKTLQEGIAGDNVGLLLR---GVSREEVER 300
Query: 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRN 202
GQVL G++ + E S ++LK+ G R G G + Q R
Sbjct: 301 GQVLAKPGSITP-HTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRT 346
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 36 LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95
L + I + IP P+RD + V F + +G VA G I RG +KVG E+
Sbjct: 202 LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEV 253
Query: 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155
E+ V E + T + + + LQ + G +G+ + + R +
Sbjct: 254 EI----VGLAPETRKTV------VTGVEMHRKTLQEGIAGDNVGLLLR---GVSREEVER 300
Query: 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRN 202
GQVL G++ + E S ++LK+ G R G G + Q R
Sbjct: 301 GQVLAKPGSITP-HTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRT 346
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 36 LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95
L + I + IP P+RD + V F + +G VA G I RG +KVG E+
Sbjct: 202 LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEV 253
Query: 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155
E+ V E + T + + + LQ + G +G+ + + R +
Sbjct: 254 EI----VGLAPETRKTV------VTGVEMHRKTLQEGIAGDNVGLLLR---GVSREEVER 300
Query: 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRN 202
GQVL G++ + E S ++LK+ G R G G + Q R
Sbjct: 301 GQVLAKPGSITP-HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRT 346
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 76 KGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPG 135
+G VA G I RG +KVG E+E+ GL + T K + + + + LQ + G
Sbjct: 234 RGTVATGRIERGKVKVGDEVEI-VGLARE------TRKTV---VTGVEMHRKTLQEGIAG 283
Query: 136 GLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAK 195
+G+ + + R + GQVL G++ + + E S ++LK+ G R G G +
Sbjct: 284 DNVGL---LLRGVSREEVERGQVLAKRGSITR-HTKFEASVYILKKEEGGRHTGFFTGYR 339
Query: 196 VQ 197
Q
Sbjct: 340 RQ 341
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 2 QVKYVTQKWRLERTVAEGAPV-IPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVI 60
QVK + Q +ERT AEG + +P K ++V+ E I + +P DF P I +
Sbjct: 42 QVKALAQ---VERT-AEGVVLTLPEGTVKKLRLQVMGERIIRVTALPGTDFGIVPESIQV 97
Query: 61 RSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVS-KDSEGKL 110
V KP V AG ++ +V E+ + G VS +D++G +
Sbjct: 98 ----VAKPATNV-PFSVDQAGEKLVLKTSQVSAEVSLLDGTVSFRDAKGNV 143
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 18 EGAPVIPISAQLKYNIEVLCEYITKKIPIP--IRDFTSSPRLIVIRSFDVNKPGCEVDDL 75
+ + +IPISA+ + ++ L I + IR+ S ++ + +F + G
Sbjct: 161 KNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGT----- 215
Query: 76 KGGVAGGSILRGVLKVGMEIEVRP 99
V G+I +G++KVG E++V P
Sbjct: 216 ---VVTGTINKGIVKVGDELKVLP 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,971,897
Number of Sequences: 62578
Number of extensions: 313685
Number of successful extensions: 716
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 26
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)