Query psy1177
Match_columns 283
No_of_seqs 182 out of 1461
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 18:29:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5257 GCD11 Translation init 100.0 3.6E-57 7.8E-62 416.2 26.3 253 2-260 159-412 (415)
2 PTZ00327 eukaryotic translatio 100.0 3.4E-53 7.4E-58 414.4 32.6 260 2-261 190-451 (460)
3 KOG0466|consensus 100.0 3.2E-52 7E-57 381.4 11.0 261 2-262 198-459 (466)
4 TIGR03680 eif2g_arch translati 100.0 8.5E-49 1.8E-53 378.7 31.4 251 3-259 154-405 (406)
5 PRK04000 translation initiatio 100.0 2E-46 4.4E-51 362.8 31.6 251 3-259 159-410 (411)
6 PRK10512 selenocysteinyl-tRNA- 100.0 2E-43 4.4E-48 356.4 27.3 224 3-270 124-348 (614)
7 KOG0460|consensus 100.0 1.8E-42 3.8E-47 320.9 14.0 227 2-264 190-438 (449)
8 TIGR00475 selB selenocysteine- 100.0 1.3E-39 2.8E-44 327.3 27.9 218 4-269 124-344 (581)
9 PRK12736 elongation factor Tu; 100.0 3.9E-38 8.4E-43 303.4 29.1 220 5-262 151-392 (394)
10 COG3276 SelB Selenocysteine-sp 100.0 4.8E-39 1E-43 306.8 21.8 224 3-267 120-344 (447)
11 COG0050 TufB GTPases - transla 100.0 2.3E-39 5E-44 295.7 18.7 223 2-260 148-390 (394)
12 PRK12735 elongation factor Tu; 100.0 1.3E-37 2.8E-42 299.9 28.6 219 5-261 151-393 (396)
13 PRK00049 elongation factor Tu; 100.0 4.8E-37 1E-41 296.0 30.0 220 5-262 151-394 (396)
14 TIGR00485 EF-Tu translation el 100.0 4.2E-37 9.2E-42 296.0 29.0 219 5-261 151-391 (394)
15 PLN03126 Elongation factor Tu; 100.0 3.4E-37 7.5E-42 303.2 28.9 220 6-261 221-475 (478)
16 PLN03127 Elongation factor Tu; 100.0 3E-37 6.4E-42 301.6 27.9 222 6-261 201-444 (447)
17 PRK12317 elongation factor 1-a 100.0 3.1E-37 6.7E-42 299.3 27.0 217 5-264 163-422 (425)
18 TIGR00483 EF-1_alpha translati 100.0 5.7E-37 1.2E-41 297.6 26.9 217 4-263 164-423 (426)
19 PTZ00141 elongation factor 1- 100.0 4.3E-37 9.4E-42 300.5 25.9 214 5-261 171-428 (446)
20 CHL00071 tufA elongation facto 100.0 1.5E-36 3.3E-41 293.6 27.9 220 5-262 151-407 (409)
21 PLN00043 elongation factor 1-a 100.0 2.6E-35 5.6E-40 288.0 26.9 214 5-261 171-428 (447)
22 TIGR02034 CysN sulfate adenyly 100.0 2.9E-34 6.2E-39 277.6 25.5 210 6-259 158-406 (406)
23 COG5256 TEF1 Translation elong 100.0 2.2E-34 4.7E-39 273.3 21.8 217 2-262 162-426 (428)
24 PRK05124 cysN sulfate adenylyl 100.0 1.6E-33 3.4E-38 277.3 26.4 213 7-263 186-438 (474)
25 COG2895 CysN GTPases - Sulfate 100.0 4.6E-34 1E-38 266.1 19.5 217 2-263 156-416 (431)
26 PRK05506 bifunctional sulfate 100.0 7.8E-33 1.7E-37 280.8 27.6 215 6-264 182-435 (632)
27 cd03688 eIF2_gamma_II eIF2_gam 100.0 3E-32 6.6E-37 217.3 13.1 113 50-163 1-113 (113)
28 KOG0461|consensus 100.0 7.6E-29 1.7E-33 230.8 12.5 218 6-263 149-408 (522)
29 COG5258 GTPBP1 GTPase [General 99.9 4.4E-24 9.6E-29 201.2 19.8 203 19-262 313-526 (527)
30 KOG0459|consensus 99.9 1.2E-22 2.6E-27 192.3 18.7 215 2-261 236-498 (501)
31 KOG0458|consensus 99.9 2E-22 4.4E-27 197.8 20.0 217 2-261 332-600 (603)
32 cd03693 EF1_alpha_II EF1_alpha 99.9 2.4E-21 5.2E-26 150.6 10.7 89 52-164 2-90 (91)
33 cd03698 eRF3_II_like eRF3_II_l 99.8 1.5E-20 3.3E-25 143.5 10.8 83 54-161 1-83 (83)
34 cd03694 GTPBP_II Domain II of 99.8 3.1E-20 6.7E-25 143.3 10.3 83 55-161 1-87 (87)
35 cd03697 EFTU_II EFTU_II: Elong 99.8 3.1E-20 6.8E-25 143.1 9.0 85 55-163 1-87 (87)
36 cd04089 eRF3_II eRF3_II: domai 99.8 7.4E-20 1.6E-24 139.5 10.9 82 54-161 1-82 (82)
37 cd03696 selB_II selB_II: this 99.8 1.5E-18 3.2E-23 132.3 10.2 83 55-161 1-83 (83)
38 cd03695 CysN_NodQ_II CysN_NodQ 99.7 1.2E-17 2.6E-22 127.3 10.8 81 55-161 1-81 (81)
39 cd04094 selB_III This family r 99.7 1.1E-16 2.3E-21 125.7 11.7 88 156-259 1-97 (97)
40 PF09173 eIF2_C: Initiation fa 99.7 2.1E-16 4.5E-21 122.0 11.4 87 169-259 1-88 (88)
41 KOG0463|consensus 99.7 5.1E-16 1.1E-20 146.8 15.9 205 19-263 332-547 (641)
42 TIGR01394 TypA_BipA GTP-bindin 99.6 3.8E-14 8.2E-19 143.4 17.0 137 3-164 135-289 (594)
43 TIGR01393 lepA GTP-binding pro 99.6 6.3E-14 1.4E-18 142.0 16.7 124 16-164 151-278 (595)
44 PRK05433 GTP-binding protein L 99.5 3.8E-13 8.3E-18 136.4 17.0 124 16-164 155-282 (600)
45 PRK10218 GTP-binding protein; 99.5 9.1E-13 2E-17 133.6 16.5 135 3-163 139-292 (607)
46 cd03706 mtEFTU_III Domain III 99.4 5.6E-12 1.2E-16 98.0 11.3 80 169-261 3-92 (93)
47 cd03707 EFTU_III Domain III of 99.4 6.5E-12 1.4E-16 96.9 10.5 78 169-259 3-90 (90)
48 KOG1143|consensus 99.4 2.9E-11 6.2E-16 114.8 16.4 204 20-263 363-583 (591)
49 TIGR00491 aIF-2 translation in 99.3 1.2E-11 2.6E-16 125.1 14.3 90 18-126 189-283 (590)
50 TIGR00487 IF-2 translation ini 99.3 1.4E-11 3E-16 124.8 14.3 100 18-140 223-325 (587)
51 PRK14845 translation initiatio 99.3 4.3E-11 9.3E-16 127.2 14.5 104 18-140 646-766 (1049)
52 cd03692 mtIF2_IVc mtIF2_IVc: t 99.2 1.2E-10 2.7E-15 89.2 10.4 80 57-159 3-82 (84)
53 PRK04004 translation initiatio 99.2 1.9E-10 4.1E-15 116.5 13.6 104 18-140 191-311 (586)
54 PRK05306 infB translation init 99.1 6.3E-10 1.4E-14 115.8 14.8 100 18-140 425-527 (787)
55 COG0481 LepA Membrane GTPase L 99.1 9.5E-10 2.1E-14 107.2 11.4 110 5-125 149-258 (603)
56 KOG0462|consensus 99.0 1E-09 2.3E-14 108.3 9.8 98 16-121 206-303 (650)
57 PF03144 GTP_EFTU_D2: Elongati 99.0 2.3E-09 5E-14 79.2 8.9 73 77-160 1-74 (74)
58 cd01513 Translation_factor_III 99.0 3.5E-09 7.6E-14 82.7 9.9 72 170-259 4-102 (102)
59 cd01342 Translation_Factor_II_ 99.0 6.8E-09 1.5E-13 75.6 10.7 80 55-160 1-82 (83)
60 PF03143 GTP_EFTU_D3: Elongati 98.9 1.8E-08 4E-13 79.3 10.8 76 167-260 3-96 (99)
61 CHL00189 infB translation init 98.9 3.3E-08 7.1E-13 102.4 15.0 100 18-140 383-485 (742)
62 cd03708 GTPBP_III Domain III o 98.9 2.5E-08 5.5E-13 76.1 10.2 73 169-260 3-85 (87)
63 COG1217 TypA Predicted membran 98.9 5.9E-08 1.3E-12 94.7 14.9 138 3-165 139-294 (603)
64 PF14578 GTP_EFTU_D4: Elongati 98.8 5E-08 1.1E-12 74.3 11.1 77 53-159 3-79 (81)
65 PRK12740 elongation factor G; 98.8 5.5E-08 1.2E-12 99.9 13.1 120 19-163 236-373 (668)
66 PRK13351 elongation factor G; 98.7 1.2E-07 2.6E-12 97.9 13.6 116 20-163 253-390 (687)
67 PRK07560 elongation factor EF- 98.7 1.4E-07 3.1E-12 98.1 14.2 118 19-164 196-376 (731)
68 cd04093 HBS1_C HBS1_C: this fa 98.7 1.2E-07 2.5E-12 75.2 10.0 74 169-260 3-105 (107)
69 cd03705 EF1_alpha_III Domain I 98.7 8.2E-08 1.8E-12 75.7 8.6 73 169-259 3-104 (104)
70 TIGR00490 aEF-2 translation el 98.6 6.1E-07 1.3E-11 93.2 12.5 103 33-163 243-374 (720)
71 cd04095 CysN_NoDQ_III TCysN_No 98.5 6.5E-07 1.4E-11 70.6 9.1 73 169-259 3-103 (103)
72 cd03704 eRF3c_III This family 98.5 1.1E-06 2.4E-11 69.9 9.8 74 169-260 3-106 (108)
73 TIGR00503 prfC peptide chain r 98.4 6.4E-06 1.4E-10 82.8 13.5 119 18-162 248-380 (527)
74 PRK00741 prfC peptide chain re 98.3 9E-06 2E-10 81.8 12.9 120 19-163 248-380 (526)
75 TIGR00484 EF-G translation elo 98.3 1.1E-05 2.4E-10 83.5 13.7 117 19-163 253-392 (689)
76 PRK12739 elongation factor G; 98.3 1E-05 2.2E-10 83.8 13.3 116 20-163 253-391 (691)
77 PRK00007 elongation factor G; 98.3 1.2E-05 2.6E-10 83.3 13.4 116 20-163 255-394 (693)
78 KOG1145|consensus 98.1 7.2E-06 1.6E-10 81.6 7.0 100 18-140 289-391 (683)
79 cd04088 EFG_mtEFG_II EFG_mtEFG 97.8 0.00015 3.3E-09 54.6 8.9 75 61-160 4-82 (83)
80 cd04092 mtEFG2_II_like mtEFG2_ 97.8 0.00017 3.7E-09 54.5 8.2 69 72-160 10-82 (83)
81 COG0480 FusA Translation elong 97.7 0.00053 1.2E-08 71.1 13.8 116 19-163 252-392 (697)
82 COG0532 InfB Translation initi 97.6 0.0003 6.6E-09 70.0 9.0 103 15-140 140-245 (509)
83 cd04091 mtEFG1_II_like mtEFG1_ 97.5 0.0005 1.1E-08 51.8 7.9 66 74-160 11-80 (81)
84 cd03699 lepA_II lepA_II: This 97.5 0.00097 2.1E-08 50.8 8.9 74 71-160 9-85 (86)
85 cd03691 BipA_TypA_II BipA_TypA 97.5 0.0011 2.4E-08 50.3 8.9 73 71-160 9-85 (86)
86 KOG0052|consensus 97.4 0.00028 6E-09 68.0 6.0 144 84-261 197-370 (391)
87 cd03689 RF3_II RF3_II: this su 97.3 0.0017 3.7E-08 49.6 8.5 66 75-160 14-83 (85)
88 cd03690 Tet_II Tet_II: This su 97.3 0.0018 3.9E-08 49.4 8.6 79 53-160 2-84 (85)
89 COG4108 PrfC Peptide chain rel 97.2 0.00086 1.9E-08 65.7 6.8 109 18-141 249-367 (528)
90 KOG0465|consensus 96.9 0.0034 7.4E-08 63.6 8.6 119 20-165 283-423 (721)
91 TIGR00487 IF-2 translation ini 96.8 0.0068 1.5E-07 62.0 9.3 81 56-159 494-574 (587)
92 PRK05306 infB translation init 96.6 0.015 3.3E-07 61.3 10.9 81 56-159 696-776 (787)
93 cd03700 eEF2_snRNP_like_II EF2 96.3 0.031 6.7E-07 43.1 8.4 62 75-140 14-79 (93)
94 CHL00189 infB translation init 96.3 0.022 4.9E-07 59.7 9.7 82 54-159 649-730 (742)
95 cd03703 aeIF5B_II aeIF5B_II: T 96.1 0.041 9E-07 44.4 8.4 56 74-140 12-80 (110)
96 cd03702 IF2_mtIF2_II This fami 95.9 0.031 6.7E-07 43.9 6.5 51 75-140 13-64 (95)
97 COG0532 InfB Translation initi 95.8 0.074 1.6E-06 53.3 10.3 78 58-159 417-495 (509)
98 TIGR00491 aIF-2 translation in 95.4 0.12 2.5E-06 53.1 10.4 77 61-161 473-549 (590)
99 cd03701 IF2_IF5B_II IF2_IF5B_I 95.4 0.056 1.2E-06 42.2 6.3 52 74-140 12-64 (95)
100 cd04090 eEF2_II_snRNP Loc2 eEF 95.3 0.17 3.8E-06 39.0 8.9 60 77-140 16-79 (94)
101 PRK15467 ethanolamine utilizat 95.0 0.044 9.5E-07 46.1 5.1 40 5-45 108-147 (158)
102 KOG1144|consensus 95.0 0.032 6.9E-07 58.1 4.9 131 2-140 632-793 (1064)
103 PLN00116 translation elongatio 94.2 0.23 5E-06 53.0 9.5 102 20-140 323-454 (843)
104 TIGR00436 era GTP-binding prot 94.2 0.078 1.7E-06 48.5 5.2 25 21-45 140-164 (270)
105 PRK04004 translation initiatio 94.1 0.35 7.7E-06 49.6 10.0 74 61-159 475-549 (586)
106 PTZ00416 elongation factor 2; 94.0 0.46 1E-05 50.7 11.0 96 33-140 325-450 (836)
107 COG1159 Era GTPase [General fu 93.7 0.099 2.2E-06 49.0 4.7 46 7-60 135-181 (298)
108 PRK14845 translation initiatio 93.5 0.46 9.9E-06 51.8 10.0 77 61-161 931-1007(1049)
109 PRK14664 tRNA-specific 2-thiou 91.6 1.2 2.7E-05 43.0 9.4 112 128-259 227-345 (362)
110 cd04143 Rhes_like Rhes_like su 90.2 0.55 1.2E-05 42.7 5.3 42 5-48 133-174 (247)
111 PRK15494 era GTPase Era; Provi 90.1 0.44 9.6E-06 45.4 4.7 39 6-45 178-216 (339)
112 PRK09435 membrane ATPase/prote 89.9 0.49 1.1E-05 45.2 4.9 42 4-45 215-260 (332)
113 cd01855 YqeH YqeH. YqeH is an 89.8 0.53 1.1E-05 40.4 4.7 27 19-45 99-125 (190)
114 KOG0092|consensus 88.0 1 2.2E-05 39.9 5.1 44 2-48 127-170 (200)
115 PRK14665 mnmA tRNA-specific 2- 87.9 3.8 8.2E-05 39.6 9.5 111 128-259 240-358 (360)
116 cd04142 RRP22 RRP22 subfamily. 87.5 1.1 2.4E-05 39.0 5.2 39 7-47 138-176 (198)
117 cd04144 Ras2 Ras2 subfamily. 86.3 0.89 1.9E-05 38.8 3.9 36 7-45 128-163 (190)
118 cd04126 Rab20 Rab20 subfamily. 86.0 1.1 2.5E-05 39.9 4.5 40 5-44 139-189 (220)
119 PRK00143 mnmA tRNA-specific 2- 85.9 5 0.00011 38.4 9.1 112 127-259 226-345 (346)
120 cd04112 Rab26 Rab26 subfamily. 85.7 1.7 3.7E-05 37.1 5.3 36 6-44 127-162 (191)
121 cd04118 Rab24 Rab24 subfamily. 85.5 1.3 2.8E-05 37.7 4.4 36 6-44 130-165 (193)
122 TIGR03594 GTPase_EngA ribosome 85.4 1.6 3.6E-05 42.2 5.6 40 4-43 301-342 (429)
123 cd04107 Rab32_Rab38 Rab38/Rab3 85.2 1.4 2.9E-05 38.1 4.5 38 5-44 130-167 (201)
124 KOG1144|consensus 85.1 2 4.4E-05 45.3 6.2 54 78-142 952-1005(1064)
125 cd01859 MJ1464 MJ1464. This f 85.0 0.87 1.9E-05 37.6 3.1 27 19-45 70-96 (156)
126 PTZ00099 rab6; Provisional 85.0 1.5 3.3E-05 37.5 4.7 27 19-45 116-142 (176)
127 PRK09866 hypothetical protein; 83.8 2.3 5E-05 44.4 6.0 38 6-43 310-351 (741)
128 PRK00089 era GTPase Era; Revie 83.8 2.5 5.5E-05 38.8 5.8 28 18-45 144-171 (292)
129 cd04128 Spg1 Spg1p. Spg1p (se 83.7 1 2.2E-05 38.6 3.0 27 18-44 139-165 (182)
130 COG1160 Predicted GTPases [Gen 83.4 1.5 3.3E-05 43.4 4.3 26 17-42 323-348 (444)
131 PRK12298 obgE GTPase CgtA; Rev 83.2 2 4.4E-05 41.9 5.1 26 20-45 308-333 (390)
132 TIGR00420 trmU tRNA (5-methyla 83.2 8.2 0.00018 37.1 9.2 113 128-259 232-352 (352)
133 cd01882 BMS1 Bms1. Bms1 is an 83.0 4.2 9.1E-05 36.2 6.8 63 6-68 157-224 (225)
134 cd04109 Rab28 Rab28 subfamily. 83.0 1.8 3.9E-05 37.9 4.4 36 6-44 130-165 (215)
135 PRK12296 obgE GTPase CgtA; Rev 82.5 1.9 4.2E-05 43.4 4.8 37 6-45 304-340 (500)
136 PRK00093 GTP-binding protein D 82.1 1.9 4.1E-05 41.9 4.6 26 17-42 316-341 (435)
137 PF03054 tRNA_Me_trans: tRNA m 81.4 4.8 0.0001 38.9 6.9 113 129-259 234-356 (356)
138 cd04110 Rab35 Rab35 subfamily. 81.2 2.3 5E-05 36.6 4.3 36 6-44 131-166 (199)
139 KOG0469|consensus 81.1 3 6.4E-05 42.3 5.4 126 3-140 291-456 (842)
140 PTZ00369 Ras-like protein; Pro 80.6 2.2 4.8E-05 36.3 4.0 26 19-44 141-166 (189)
141 cd04147 Ras_dva Ras-dva subfam 80.5 1.8 4E-05 37.2 3.4 27 19-45 137-163 (198)
142 cd04121 Rab40 Rab40 subfamily. 80.4 3.2 6.9E-05 36.0 4.9 37 5-44 130-166 (189)
143 PRK12297 obgE GTPase CgtA; Rev 80.4 2.1 4.5E-05 42.3 4.1 26 20-45 302-327 (424)
144 cd04111 Rab39 Rab39 subfamily. 80.4 2.5 5.4E-05 37.1 4.3 36 6-44 130-165 (211)
145 cd01998 tRNA_Me_trans tRNA met 79.1 14 0.00029 35.5 9.2 114 127-259 227-349 (349)
146 cd04125 RabA_like RabA-like su 78.7 3.3 7.1E-05 35.0 4.4 35 7-44 127-161 (188)
147 PRK03003 GTP-binding protein D 78.6 3.5 7.5E-05 41.0 5.1 27 18-44 355-381 (472)
148 COG0482 TrmU Predicted tRNA(5- 78.3 16 0.00034 35.4 9.2 112 129-259 231-352 (356)
149 PF03308 ArgK: ArgK protein; 77.9 4.8 0.0001 37.4 5.4 41 3-43 184-228 (266)
150 cd04132 Rho4_like Rho4-like su 77.9 3.3 7.2E-05 34.8 4.2 38 5-44 129-166 (187)
151 PLN03110 Rab GTPase; Provision 76.5 3.9 8.4E-05 35.9 4.3 26 19-44 148-173 (216)
152 cd04134 Rho3 Rho3 subfamily. 76.1 3.3 7.2E-05 35.3 3.7 28 18-45 147-174 (189)
153 KOG1423|consensus 74.8 3.4 7.3E-05 39.5 3.6 23 22-44 248-270 (379)
154 cd04148 RGK RGK subfamily. Th 73.4 3.1 6.7E-05 36.8 2.9 27 19-45 137-163 (221)
155 cd01849 YlqF_related_GTPase Yl 73.2 4.2 9.2E-05 33.6 3.6 25 19-43 59-83 (155)
156 cd04120 Rab12 Rab12 subfamily. 72.7 5.7 0.00012 34.8 4.4 36 7-44 127-162 (202)
157 COG1160 Predicted GTPases [Gen 72.5 8.5 0.00018 38.3 5.9 45 14-60 136-184 (444)
158 PLN03118 Rab family protein; P 72.0 3.6 7.8E-05 35.7 3.0 26 19-44 151-176 (211)
159 TIGR03597 GTPase_YqeH ribosome 72.0 7.6 0.00017 37.3 5.4 34 10-43 118-151 (360)
160 cd01856 YlqF YlqF. Proteins o 70.3 4.8 0.0001 33.9 3.3 26 20-45 76-101 (171)
161 TIGR00437 feoB ferrous iron tr 69.8 5.7 0.00012 40.8 4.3 25 19-43 129-153 (591)
162 cd04137 RheB Rheb (Ras Homolog 69.3 4.6 0.0001 33.6 3.0 27 19-45 137-163 (180)
163 PLN03108 Rab family protein; P 69.1 7.3 0.00016 34.0 4.3 36 6-44 132-167 (210)
164 PRK00098 GTPase RsgA; Reviewed 69.0 7.1 0.00015 36.4 4.4 23 19-41 141-163 (298)
165 TIGR00750 lao LAO/AO transport 68.7 5.4 0.00012 37.2 3.5 25 20-44 213-237 (300)
166 PRK12288 GTPase RsgA; Reviewed 67.4 6.3 0.00014 37.8 3.8 24 19-42 182-205 (347)
167 PRK12289 GTPase RsgA; Reviewed 66.0 5.6 0.00012 38.3 3.1 24 19-42 149-172 (352)
168 COG2262 HflX GTPases [General 65.9 5.3 0.00011 39.3 2.9 25 21-45 332-356 (411)
169 PRK09518 bifunctional cytidyla 65.8 10 0.00022 39.8 5.2 28 17-44 593-620 (712)
170 PRK13796 GTPase YqeH; Provisio 64.9 14 0.00029 35.7 5.6 32 12-43 126-157 (365)
171 cd01899 Ygr210 Ygr210 subfamil 63.9 11 0.00023 35.9 4.5 28 18-45 241-269 (318)
172 PRK05291 trmE tRNA modificatio 62.6 6.6 0.00014 38.9 3.0 27 19-45 344-370 (449)
173 smart00176 RAN Ran (Ras-relate 62.4 7.3 0.00016 34.1 3.0 27 18-44 127-153 (200)
174 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 60.7 12 0.00027 33.7 4.2 36 5-43 149-186 (232)
175 PLN03071 GTP-binding nuclear p 58.2 9 0.0002 33.8 2.8 27 18-44 145-171 (219)
176 COG0486 ThdF Predicted GTPase 58.1 9.3 0.0002 38.1 3.1 28 18-45 349-376 (454)
177 TIGR00157 ribosome small subun 57.7 16 0.00034 33.1 4.4 24 19-42 97-120 (245)
178 COG1326 Uncharacterized archae 57.7 19 0.00042 31.9 4.7 41 88-143 74-115 (201)
179 smart00785 AARP2CN AARP2CN (NU 56.5 86 0.0019 23.8 9.3 77 34-126 3-80 (83)
180 PRK09554 feoB ferrous iron tra 56.4 14 0.0003 39.4 4.2 26 19-44 142-167 (772)
181 cd01858 NGP_1 NGP-1. Autoanti 56.1 19 0.00041 29.7 4.3 23 22-44 72-94 (157)
182 COG0370 FeoB Fe2+ transport sy 54.9 12 0.00026 39.0 3.4 27 19-45 138-164 (653)
183 TIGR03594 GTPase_EngA ribosome 54.9 21 0.00045 34.5 4.9 26 21-46 136-161 (429)
184 TIGR03596 GTPase_YlqF ribosome 52.2 22 0.00048 32.6 4.5 27 19-45 77-103 (276)
185 PRK11058 GTPase HflX; Provisio 52.0 13 0.00029 36.6 3.2 24 22-45 339-362 (426)
186 PRK03003 GTP-binding protein D 51.9 20 0.00044 35.5 4.4 25 22-46 176-200 (472)
187 COG4013 Uncharacterized protei 51.6 38 0.00082 26.1 4.8 39 197-235 19-57 (91)
188 PRK01889 GTPase RsgA; Reviewed 51.5 21 0.00046 34.2 4.4 24 18-41 170-193 (356)
189 PF03193 DUF258: Protein of un 51.1 21 0.00045 30.7 3.8 33 7-42 3-35 (161)
190 cd00754 MoaD Ubiquitin domain 50.6 35 0.00076 24.7 4.6 59 23-100 18-76 (80)
191 PRK11130 moaD molybdopterin sy 50.1 66 0.0014 23.8 6.0 58 23-100 19-77 (81)
192 PF03473 MOSC: MOSC domain; I 49.4 26 0.00055 28.2 4.0 20 78-97 114-133 (133)
193 PRK09602 translation-associate 48.5 19 0.0004 35.3 3.5 28 18-45 243-271 (396)
194 PF08142 AARP2CN: AARP2CN (NUC 48.0 1.2E+02 0.0026 23.0 9.4 78 35-126 4-82 (85)
195 PRK00093 GTP-binding protein D 47.8 26 0.00057 34.0 4.4 25 21-45 138-162 (435)
196 cd01854 YjeQ_engC YjeQ/EngC. 45.6 18 0.00039 33.5 2.8 23 19-41 138-160 (287)
197 KOG0091|consensus 45.2 31 0.00067 30.3 3.9 38 3-43 134-171 (213)
198 cd01764 Urm1 Urm1-like ubuitin 44.6 48 0.001 25.6 4.6 61 29-100 27-90 (94)
199 KOG0464|consensus 43.9 10 0.00022 37.8 0.8 74 18-97 291-369 (753)
200 KOG0410|consensus 43.8 15 0.00032 35.6 1.9 58 22-101 318-375 (410)
201 COG1703 ArgK Putative periplas 43.4 24 0.00051 33.6 3.2 28 17-44 226-253 (323)
202 COG0536 Obg Predicted GTPase [ 43.1 33 0.00071 33.3 4.1 41 3-44 292-332 (369)
203 PRK09563 rbgA GTPase YlqF; Rev 42.1 21 0.00046 33.0 2.7 27 19-45 80-106 (287)
204 PRK09518 bifunctional cytidyla 42.1 36 0.00077 35.8 4.6 25 22-46 413-437 (712)
205 COG1163 DRG Predicted GTPase [ 41.8 39 0.00085 32.6 4.4 24 21-44 265-288 (365)
206 PRK04950 ProP expression regul 39.9 41 0.00089 30.3 4.0 41 196-236 164-204 (213)
207 KOG0094|consensus 35.2 46 0.00099 29.9 3.5 29 19-47 159-187 (221)
208 PF13496 DUF4120: Domain of un 32.3 1.2E+02 0.0026 23.5 4.9 70 2-88 5-76 (95)
209 COG1047 SlpA FKBP-type peptidy 31.5 1.2E+02 0.0026 26.4 5.5 44 198-244 90-133 (174)
210 PF09870 DUF2097: Uncharacteri 29.5 1.4E+02 0.003 23.1 4.9 40 196-235 16-55 (86)
211 PLN02799 Molybdopterin synthas 29.2 1.4E+02 0.0031 21.8 4.9 57 24-100 22-78 (82)
212 KOG1532|consensus 28.6 37 0.00081 32.2 1.9 30 15-44 234-263 (366)
213 PRK15452 putative protease; Pr 28.2 92 0.002 31.0 4.8 43 88-142 382-427 (443)
214 KOG0097|consensus 27.7 62 0.0013 27.6 2.9 33 4-39 135-168 (215)
215 KOG0078|consensus 27.4 77 0.0017 28.4 3.6 32 10-44 142-173 (207)
216 TIGR00739 yajC preprotein tran 26.3 1.6E+02 0.0034 22.4 4.7 23 88-124 37-59 (84)
217 TIGR01682 moaD molybdopterin c 26.0 1.1E+02 0.0025 22.3 3.9 51 30-100 26-76 (80)
218 COG0198 RplX Ribosomal protein 25.7 79 0.0017 25.3 3.0 35 88-123 4-39 (104)
219 PRK10737 FKBP-type peptidyl-pr 24.9 2.4E+02 0.0051 25.0 6.2 44 197-243 88-131 (196)
220 PTZ00132 GTP-binding nuclear p 24.4 77 0.0017 27.3 3.1 26 19-44 142-167 (215)
221 TIGR01080 rplX_A_E ribosomal p 24.4 1.2E+02 0.0025 24.7 3.9 11 88-98 41-51 (114)
222 KOG1980|consensus 23.9 5.8E+02 0.013 27.0 9.5 123 131-265 520-659 (754)
223 COG3596 Predicted GTPase [Gene 23.5 1.6E+02 0.0034 27.9 5.0 32 18-49 195-226 (296)
224 KOG1145|consensus 23.1 1.7E+02 0.0037 30.4 5.5 105 34-159 559-664 (683)
225 COG1908 FrhD Coenzyme F420-red 23.0 85 0.0019 26.0 2.8 41 2-42 77-119 (132)
226 PRK14498 putative molybdopteri 22.2 1.2E+02 0.0025 31.4 4.4 24 80-103 84-112 (633)
227 KOG1487|consensus 21.1 79 0.0017 29.9 2.5 27 18-44 254-280 (358)
228 KOG0084|consensus 20.4 1.5E+02 0.0032 26.6 4.0 35 5-42 134-169 (205)
No 1
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-57 Score=416.15 Aligned_cols=253 Identities=50% Similarity=0.833 Sum_probs=242.8
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEE
Q psy1177 2 QVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81 (283)
Q Consensus 2 ~~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvt 81 (283)
.+.|++|++|+++|..+|+||||+||+.+.|||.|+++|++++|+|.||.+.|++|+|.|||+||+|||.+++++|+|++
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViG 238 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIG 238 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceec
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeecc
Q psy1177 82 GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 82 Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
|++.+|.+++|||+||+|+... .++|+..|+|+.++|.||+..++++++|.||+.+|+.+++||.++|+|.+.|+|+++
T Consensus 239 Gsl~~G~l~vGDEIEIrPGi~v-~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~ 317 (415)
T COG5257 239 GSLVQGVLRVGDEIEIRPGIVV-EKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGK 317 (415)
T ss_pred ceeeeeeEecCCeEEecCCeEe-ecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccC
Confidence 9999999999999999998766 567789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCE
Q psy1177 162 VGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEK 241 (283)
Q Consensus 162 ~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr 241 (283)
||++|+++..|++++++|++..|...+ .+..||+.++.++|++||+++.|.|...+++.+++.|..|+|++.|+|
T Consensus 318 pG~lPpv~~~~~ie~~LL~RvvG~~~e-----~kvepik~~E~Lml~VGtatT~GvV~~~k~d~~ev~Lk~Pvcae~g~r 392 (415)
T COG5257 318 PGTLPPVWTSIRIEYHLLERVVGTKEE-----LKVEPIKTNEVLMLNVGTATTVGVVTSAKKDEIEVKLKRPVCAEIGER 392 (415)
T ss_pred CCCCCCceEEEEEEeeehhhhhCcccc-----cccccccCCCeEEEEeecceeEEEEEEecCceEEEEeccceecCCCCE
Confidence 999999999999999999999886543 347899999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCcEEEE-EEEe
Q psy1177 242 IALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 242 ~ii~R~~~~~~~tiG-G~v~ 260 (283)
++|+|+..+.||+|| |.|-
T Consensus 393 vaisRri~~rWRLIG~G~ik 412 (415)
T COG5257 393 VAISRRIGNRWRLIGYGTIK 412 (415)
T ss_pred EEEEeeecceEEEEeEEEEe
Confidence 999999999999999 9873
No 2
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=3.4e-53 Score=414.38 Aligned_cols=260 Identities=65% Similarity=1.064 Sum_probs=237.8
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEE
Q psy1177 2 QVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81 (283)
Q Consensus 2 ~~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvt 81 (283)
++++++|+++++++..+++||||+||++|+||++|+++|++.++.|.|+.++||||||||+|+|+|||.++++++|||++
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~ 269 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAG 269 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEE
Confidence 46789999999988889999999999999999999999998799998988999999999999999999888999999999
Q ss_pred EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeecc
Q psy1177 82 GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 82 Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
|||.+|.+++||+|+++|++..+..+|++.++|+.++|+|||+|++++++|.|||+|||+|.+|++++++|+.||+||++
T Consensus 270 G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~ 349 (460)
T PTZ00327 270 GSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGY 349 (460)
T ss_pred EEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEc
Confidence 99999999999999999997655568889999999999999999999999999999999999989999999999999999
Q ss_pred CCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCC-eEEEEeCCeEecccCC
Q psy1177 162 VGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKAD-LAKISLTNPVCTEVNE 240 (283)
Q Consensus 162 ~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~-~~~l~L~~Pv~~~~gd 240 (283)
+++.|++++.|+|+++||++..|...+++|+..+..||++|+.+++|+||+++.|+|..++.+ .++|+|++|+|+.+||
T Consensus 350 ~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~~~~~~~l~l~~P~~~~~gd 429 (460)
T PTZ00327 350 PGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIKDDGIAKLELTTPVCTSVGE 429 (460)
T ss_pred CCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEEEEEEeCCCeEEEEEECccEeccCCC
Confidence 999998888999999999986565555554433358999999999999999999999999988 9999999999999999
Q ss_pred EEEEEeecCCCcEEEE-EEEec
Q psy1177 241 KIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 241 r~ii~R~~~~~~~tiG-G~v~~ 261 (283)
||+|||+.+..|+||| |.|..
T Consensus 430 r~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 430 KIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EEEEEeccCCCcEEEEEEEEcC
Confidence 9999877555599999 88754
No 3
>KOG0466|consensus
Probab=100.00 E-value=3.2e-52 Score=381.44 Aligned_cols=261 Identities=76% Similarity=1.197 Sum_probs=255.2
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEE
Q psy1177 2 QVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81 (283)
Q Consensus 2 ~~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvt 81 (283)
.+.|++|..|+.+|..+++||||+||+.+.|||.++++|.+++|+|.||...|+||-|.|||+||+||++.++++|+|.+
T Consensus 198 ~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvag 277 (466)
T KOG0466|consen 198 LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAG 277 (466)
T ss_pred HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeecc
Q psy1177 82 GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 82 Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
|++..|.+++||++||+|+...+..+|+..|+|+.++|.|+.+..+++++|.||+.+|++++.||.+.|+|.+.|+||++
T Consensus 278 gsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~ 357 (466)
T KOG0466|consen 278 GSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGA 357 (466)
T ss_pred chhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHhh
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCE
Q psy1177 162 VGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEK 241 (283)
Q Consensus 162 ~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr 241 (283)
.|.+|.++.++++.|++|.++.|.++.|+++..+.+.|..++.+++++|+.++.|+|..++.+.+.+.|..|+|.+.|++
T Consensus 358 ~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~d~~k~~Lt~P~CteigEk 437 (466)
T KOG0466|consen 358 VGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKADMAKIQLTSPVCTEIGEK 437 (466)
T ss_pred ccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecccccCceEEEEecceeeeEecCchhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCcEEEE-EEEecC
Q psy1177 242 IALSRRVEKHWSWIE-GTVSAK 262 (283)
Q Consensus 242 ~ii~R~~~~~~~tiG-G~v~~~ 262 (283)
+++||+.+.+||+|| |.|-+.
T Consensus 438 iAlSRrvekhWRLIGwg~I~~G 459 (466)
T KOG0466|consen 438 IALSRRVEKHWRLIGWGQIKAG 459 (466)
T ss_pred hhhhhhhhhheEEecceeEeCC
Confidence 999999999999999 998554
No 4
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=8.5e-49 Score=378.67 Aligned_cols=251 Identities=45% Similarity=0.759 Sum_probs=228.9
Q ss_pred hHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEE
Q psy1177 3 VKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGG 82 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtG 82 (283)
+++++++++++.+..++.|++|+||++|+|+++|+++|++.++.|.++.+.||||||||+|+|+|+|+++.+++|||++|
T Consensus 154 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G 233 (406)
T TIGR03680 154 ENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGG 233 (406)
T ss_pred HHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEE
Confidence 45788888888877788999999999999999999999987888888889999999999999999999899999999999
Q ss_pred EEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeeccC
Q psy1177 83 SILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAV 162 (283)
Q Consensus 83 tv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~ 162 (283)
+|++|.+++||+|.++|++. +.++|+..++|..++|+|||++++++++|.|||+|||+|+++++++++|+.||+||+++
T Consensus 234 ~v~~G~i~~gd~v~i~P~~~-~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~ 312 (406)
T TIGR03680 234 SLIQGKLKVGDEIEIRPGIK-VEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKP 312 (406)
T ss_pred EEEeCEEeCCCEEEEccCcc-ccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcC
Confidence 99999999999999999854 34567788999999999999999999999999999999987778999999999999999
Q ss_pred CCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCEE
Q psy1177 163 GALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKI 242 (283)
Q Consensus 163 g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr~ 242 (283)
++.|++++.|+|+++||....++.. ..+..||+.|+.+++++||+++.|+|..++++.++|+|++|+|+.+||||
T Consensus 313 ~~~~~~~~~f~a~i~~l~~~~~~~~-----~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~~~~~l~l~~p~~~~~g~r~ 387 (406)
T TIGR03680 313 GTLPPVWESLELEVHLLERVVGTEE-----ELKVEPIKTGEVLMLNVGTATTVGVVTSARKDEIEVKLKRPVCAEEGDRV 387 (406)
T ss_pred CCCCCceeEEEEEEEEEecccCccc-----ccccccCCCCCEEEEEEccceEEEEEEEcCCcEEEEEECCcEEcCCCCEE
Confidence 9988888899999999986543321 12257999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCcEEEE-EEE
Q psy1177 243 ALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 243 ii~R~~~~~~~tiG-G~v 259 (283)
+|+|+.++.||+|| |.|
T Consensus 388 ~~~~~~~~~~~~~g~g~~ 405 (406)
T TIGR03680 388 AISRRVGGRWRLIGYGII 405 (406)
T ss_pred EEEEecCCceEEEEEEEe
Confidence 99998999999999 986
No 5
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=2e-46 Score=362.75 Aligned_cols=251 Identities=46% Similarity=0.776 Sum_probs=226.8
Q ss_pred hHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEE
Q psy1177 3 VKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGG 82 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtG 82 (283)
+.+++++++++.+...+.|++|+||++|+||++|+++|.+.++.|.++.++||||||||+|+|+|+|+.+++++|+|++|
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G 238 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGG 238 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEE
Confidence 35678888888766678999999999999999999999987888888889999999999999999999889999999999
Q ss_pred EEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeeccC
Q psy1177 83 SILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAV 162 (283)
Q Consensus 83 tv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~ 162 (283)
+|++|.+++||+|.++|++. .+.+|+..++|..++|+|||+|++++++|.|||+|+|+|+++.+++++|+.||+||+.+
T Consensus 239 ~v~~G~l~~gd~v~i~P~~~-~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~ 317 (411)
T PRK04000 239 SLIQGVLKVGDEIEIRPGIK-VEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKP 317 (411)
T ss_pred EEEeCEEecCCEEEEcCCcc-eecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcC
Confidence 99999999999999999864 23456677888889999999999999999999999999977678999999999999999
Q ss_pred CCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCEE
Q psy1177 163 GALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKI 242 (283)
Q Consensus 163 g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr~ 242 (283)
++.|++.+.|+|++.||.+.+++++ .....+|++|+.+++|+||+++.|+|..++.+.++|+|.+|+|+++||||
T Consensus 318 ~~~~~~~~~f~a~v~~l~~~~~~~~-----~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~~~~~~l~~p~~~~~g~r~ 392 (411)
T PRK04000 318 GTLPPVWESLTIEVHLLERVVGTKE-----ELKVEPIKTGEPLMLNVGTATTVGVVTSARKDEAEVKLKRPVCAEEGDRV 392 (411)
T ss_pred CCCCCceEEEEEEEEEEEhhcCccc-----cccCCCCCCCCEEEEEEeccEEEEEEEEcCCcEEEEEECCcEecCCCCEE
Confidence 9988888899999999987654432 22357999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCcEEEE-EEE
Q psy1177 243 ALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 243 ii~R~~~~~~~tiG-G~v 259 (283)
+|+|+.+..||++| |.|
T Consensus 393 ~~~~~~~~~~~~~~~~~~ 410 (411)
T PRK04000 393 AISRRVGGRWRLIGYGII 410 (411)
T ss_pred EEEEecCCcEEEEEEEEe
Confidence 99888888999999 986
No 6
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=2e-43 Score=356.41 Aligned_cols=224 Identities=20% Similarity=0.160 Sum_probs=197.5
Q ss_pred hHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEE
Q psy1177 3 VKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGG 82 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtG 82 (283)
.+.+++++++++++++++|+||+||++|+||++|+++|++ ++.|.++.++||||||||+|+++|. ||||||
T Consensus 124 ~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~-~~~~~~~~~~~~rl~Id~vf~v~G~--------GtVvtG 194 (614)
T PRK10512 124 EVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ-LPEREHAAQHRFRLAIDRAFTVKGA--------GLVVTG 194 (614)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH-hhccccCcCCCceEEEEEEeccCCC--------eEEEEE
Confidence 3457788888888888999999999999999999999996 6666666789999999999999875 799999
Q ss_pred EEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeeccC
Q psy1177 83 SILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAV 162 (283)
Q Consensus 83 tv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~ 162 (283)
||.+|++++||+|+++|++.. ++|++||+|++++++|.||||||+|+.. +++++++.|||||+.+
T Consensus 195 tv~sG~l~~Gd~v~i~p~~~~-------------~~VrsIq~~~~~v~~a~aG~rval~l~g--~~~~~~i~rGdvl~~~ 259 (614)
T PRK10512 195 TALSGEVKVGDTLWLTGVNKP-------------MRVRGLHAQNQPTEQAQAGQRIALNIAG--DAEKEQINRGDWLLAD 259 (614)
T ss_pred EEecceEecCCEEEEcCCCCc-------------EEEEEEecCCcCCCEEeCCCeEEEEecC--CCChhhCCCcCEEeCC
Confidence 999999999999999998877 9999999999999999999999999842 2777899999999999
Q ss_pred CCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCEE
Q psy1177 163 GALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKI 242 (283)
Q Consensus 163 g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr~ 242 (283)
+.+.++ +.+++.+. . ..||++|+++++|+||+++.|+|..++..+|+|+|++|+|+.+||||
T Consensus 260 ~~~~~~-~~~~~~l~---~--------------~~~l~~~~~~~~~~gt~~~~~~i~~l~~~~~~l~l~~p~~~~~gdr~ 321 (614)
T PRK10512 260 APPEPF-TRVIVELQ---T--------------HTPLTQWQPLHIHHAASHVTGRVSLLEDNLAELVLDTPLWLADNDRL 321 (614)
T ss_pred CCCccc-eeEEEEEc---C--------------CccCCCCCEEEEEEcccEEEEEEEEcCCeEEEEEECCcccccCCCEE
Confidence 776554 46655433 1 46899999999999999999999999889999999999999999999
Q ss_pred EEEeecCCCcEEEE-EEEecCccCccccC
Q psy1177 243 ALSRRVEKHWSWIE-GTVSAKVLSTRKRS 270 (283)
Q Consensus 243 ii~R~~~~~~~tiG-G~v~~~~~~~~~r~ 270 (283)
+|| + .|+.+||| |.|+++.+|++||+
T Consensus 322 ilr-~-~s~~~tigGg~Vld~~~~~~~~~ 348 (614)
T PRK10512 322 VLR-D-ISARNTLAGARVVMLNPPRRGKR 348 (614)
T ss_pred EEE-e-CCCCEEEEEEEEcccCCcccccC
Confidence 995 3 46789999 99999988887643
No 7
>KOG0460|consensus
Probab=100.00 E-value=1.8e-42 Score=320.88 Aligned_cols=227 Identities=22% Similarity=0.243 Sum_probs=201.8
Q ss_pred hhHHHHHHHHHhcCCC--CCCcEEEeecCCCC----------CHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCC
Q psy1177 2 QVKYVTQKWRLERTVA--EGAPVIPISAQLKY----------NIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPG 69 (283)
Q Consensus 2 ~~~~~eIr~~l~~t~~--~~~piIpvSA~~g~----------nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G 69 (283)
+.+.-||||+|+.++| +++|+|..||++.. .|..|++++|+++|+|.|+.+.||.|||+++|+|.|
T Consensus 190 eLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~G-- 267 (449)
T KOG0460|consen 190 ELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPG-- 267 (449)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecC--
Confidence 5678899999996555 89999999998742 378999999999999999999999999999999955
Q ss_pred CcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcc
Q psy1177 70 CEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLC 149 (283)
Q Consensus 70 ~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~ 149 (283)
|||||||||++|.+++||+++|.-. .+.+++.|.+||||++.+++|+|||++|+.+ .+++
T Consensus 268 ------RGTVvtGrlERG~lKkG~e~eivG~-----------~~~lkttvtgiemF~K~ld~a~AGDn~G~Ll---RGik 327 (449)
T KOG0460|consen 268 ------RGTVVTGRLERGVLKKGDEVEIVGH-----------NKTLKTTVTGIEMFRKSLDEAQAGDNLGALL---RGIK 327 (449)
T ss_pred ------CceEEEEEEeecccccCCEEEEecc-----------CcceeeEeehHHHHHHHHHhcccccceehhh---hcCC
Confidence 7999999999999999999999832 2347799999999999999999999999987 7999
Q ss_pred ccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec-------
Q psy1177 150 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK------- 222 (283)
Q Consensus 150 r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~------- 222 (283)
|+|++||||+++||+..+ ++.|+|++|+|++.+|+| ..|+..+++.++++-||.+.|+|...+
T Consensus 328 ~~dvkRGmvl~~pGsvk~-~~k~ea~~YiLsk~EGGR---------~~pf~s~y~~q~fs~TwD~~~~v~~~~~~~mvMP 397 (449)
T KOG0460|consen 328 REDVKRGMVLAKPGSVKP-HNKFEAQLYILSKEEGGR---------HKPFVSGYRPQMFSRTWDVTGRVDIPPEKEMVMP 397 (449)
T ss_pred HHHHhcccEEecCCcccc-cceeeEEEEEEEhhhCCC---------ccchhhccchhheeeecccceEEEccChHhcccC
Confidence 999999999999999755 679999999999999987 789999999999999999999998764
Q ss_pred C--CeEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEecCcc
Q psy1177 223 A--DLAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSAKVL 264 (283)
Q Consensus 223 ~--~~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~~~~ 264 (283)
+ ..+.+.|..||++++|+||.|| .. .+|+| |.|-+-.+
T Consensus 398 Ge~~~~~~~Li~pm~le~GqrFtiR-eG---g~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 398 GENVKVEVTLIRPMPLEKGQRFTLR-EG---GRTVGTGVVTDTLP 438 (449)
T ss_pred CCCeEEEEEEecccccCCCceeeEc-cC---CeeeeeeeEeeeee
Confidence 2 2788999999999999999994 43 37999 99855433
No 8
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1.3e-39 Score=327.30 Aligned_cols=218 Identities=17% Similarity=0.219 Sum_probs=188.0
Q ss_pred HHHHHHHHHhcCCCC-CCcEEEeecCCCCCHHHHHHHHHhhCC-CCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEE
Q psy1177 4 KYVTQKWRLERTVAE-GAPVIPISAQLKYNIEVLCEYITKKIP-IPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81 (283)
Q Consensus 4 ~~~eIr~~l~~t~~~-~~piIpvSA~~g~nI~~Ll~~L~~~i~-~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvt 81 (283)
..++++++++++++. ++|++|+||++|+||++|.+.|.+.++ .+....++||||||||+|+++|. |||||
T Consensus 124 ~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~--------GtVv~ 195 (581)
T TIGR00475 124 TEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGA--------GTVVT 195 (581)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCc--------EEEEE
Confidence 356778888888775 899999999999999999999987543 23333578999999999999886 69999
Q ss_pred EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeecc
Q psy1177 82 GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 82 Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
|||.+|++++||+|.++|++.. ++|++||+|++++++|.||||||||| .+++++++.||.+++.
T Consensus 196 G~v~~G~i~~Gd~l~i~P~~~~-------------~~Vr~iq~~~~~v~~a~aG~rval~L---~~i~~~~i~rG~~~~~ 259 (581)
T TIGR00475 196 GTAFSGEVKVGDNLRLLPINHE-------------VRVKAIQAQNQDVEIAYAGQRIALNL---MDVEPESLKRGLLILT 259 (581)
T ss_pred EEEecceEecCCEEEECCCCce-------------EEEeEEEECCccCCEEECCCEEEEEe---CCCCHHHcCCceEEcC
Confidence 9999999999999999999887 99999999999999999999999999 4788889999988877
Q ss_pred CCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCE
Q psy1177 162 VGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEK 241 (283)
Q Consensus 162 ~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr 241 (283)
+...+ ..+++.+.+ ..+|++|+++++|+||+++.|+|..++.++++++|++|+|+..||+
T Consensus 260 ~~~~~---~~~~~~~~~-----------------~~~l~~~~~~~~~~gt~~~~~~i~~l~~~~~~l~l~~P~~~~~gd~ 319 (581)
T TIGR00475 260 PEDPK---LRVVVKFIA-----------------EVPLLELQPYHIAHGMSVTTGKISLLDKGIALLTLDAPLILAKGDK 319 (581)
T ss_pred CCCCC---ceEEEEEEc-----------------CCccCCCCeEEEEEeceEEEEEEEEccCcEEEEEECCceecCCCCE
Confidence 65432 245555432 3689999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCcEEEE-EEEecCccCcccc
Q psy1177 242 IALSRRVEKHWSWIE-GTVSAKVLSTRKR 269 (283)
Q Consensus 242 ~ii~R~~~~~~~tiG-G~v~~~~~~~~~r 269 (283)
|++| . ++.+|+| |.|+++ +++++|
T Consensus 320 ~i~r-~--~~~~tiggg~vl~~-~~~~~~ 344 (581)
T TIGR00475 320 LVLR-D--SSGNFLAGARVLEP-PVRVKR 344 (581)
T ss_pred EEEE-e--CCCEEEeeeEEecC-Ccccch
Confidence 9994 4 6679999 999999 655554
No 9
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.9e-38 Score=303.38 Aligned_cols=220 Identities=22% Similarity=0.210 Sum_probs=191.6
Q ss_pred HHHHHHHHhcCCC--CCCcEEEeecCCCC--------CHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccC
Q psy1177 5 YVTQKWRLERTVA--EGAPVIPISAQLKY--------NIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDD 74 (283)
Q Consensus 5 ~~eIr~~l~~t~~--~~~piIpvSA~~g~--------nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~ 74 (283)
.++++++|+..++ +++|+||+||++|. ++++|+++|++.++.|.|+.++||||+||++|+++|.
T Consensus 151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~------ 224 (394)
T PRK12736 151 EMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGR------ 224 (394)
T ss_pred HHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCc------
Confidence 3577888887666 47899999999984 6899999999988989998899999999999999764
Q ss_pred CcceEEEEEEEeeEeeCCCEEEEecC--ceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccc
Q psy1177 75 LKGGVAGGSILRGVLKVGMEIEVRPG--LVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRAD 152 (283)
Q Consensus 75 ~rGtVvtGtv~sG~l~vGD~v~i~P~--~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~d 152 (283)
|+|++|||.+|.+++||+|.++|+ ... ++|++||+|++++++|.|||+|+++| .++++++
T Consensus 225 --G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~-------------~~V~sI~~~~~~~~~a~aGd~v~l~l---~~i~~~~ 286 (394)
T PRK12736 225 --GTVVTGRVERGTVKVGDEVEIVGIKETQK-------------TVVTGVEMFRKLLDEGQAGDNVGVLL---RGVDRDE 286 (394)
T ss_pred --EEEEEEEEeecEEecCCEEEEecCCCCeE-------------EEEEEEEECCEEccEECCCCEEEEEE---CCCcHHh
Confidence 799999999999999999999997 444 89999999999999999999999998 4677789
Q ss_pred cccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC---------
Q psy1177 153 RLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA--------- 223 (283)
Q Consensus 153 i~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~--------- 223 (283)
+.||+||+.++.++++ ..|+|+++||+...|++ ..++++|+++++|+||+++.|+|...++
T Consensus 287 i~~G~vl~~~~~~~~~-~~f~a~i~vl~~~~~~~---------~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~ 356 (394)
T PRK12736 287 VERGQVLAKPGSIKPH-TKFKAEVYILTKEEGGR---------HTPFFNNYRPQFYFRTTDVTGSIELPEGTEMVMPGDN 356 (394)
T ss_pred CCcceEEecCCCCCcc-eEEEEEEEEEecccCCC---------CCcccCCceEEEEEccCeEEEEEEecCCcceeCCCCE
Confidence 9999999999877665 69999999998654433 4789999999999999999999986542
Q ss_pred CeEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEecC
Q psy1177 224 DLAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSAK 262 (283)
Q Consensus 224 ~~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~~ 262 (283)
..|+|+|++|+|+++|+||+|| .. .+|+| |.|++.
T Consensus 357 a~v~l~~~~p~~~~~~~rfilR-~~---g~tv~~G~V~~v 392 (394)
T PRK12736 357 VTITVELIHPIAMEQGLKFAIR-EG---GRTVGAGTVTEI 392 (394)
T ss_pred EEEEEEECceEEEeeCCEEEEe-cC---CcEEEEEEEEEe
Confidence 2799999999999999999995 32 38999 998653
No 10
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-39 Score=306.80 Aligned_cols=224 Identities=21% Similarity=0.235 Sum_probs=201.1
Q ss_pred hHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEE
Q psy1177 3 VKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGG 82 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtG 82 (283)
...+.|++.++.|.++++|++++||.+|+||++|.++|.+....+.++.++|||+||||+|+|+|. ||||||
T Consensus 120 r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGv--------GTVVtG 191 (447)
T COG3276 120 RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGV--------GTVVTG 191 (447)
T ss_pred HHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccc--------cEEEEe
Confidence 345567788888889999999999999999999999999844467889999999999999999997 699999
Q ss_pred EEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeeccC
Q psy1177 83 SILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAV 162 (283)
Q Consensus 83 tv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~ 162 (283)
|+.||++++||++.++|-++. ++|||||+|++++++|.||+|||++|+ +++++++.||++|..+
T Consensus 192 tv~sG~V~v~D~L~l~p~~k~-------------v~VRsIq~~d~d~~~a~AG~RVgLaL~---~v~~eei~RG~~L~~~ 255 (447)
T COG3276 192 TVLSGEVKVGDKLYLSPINKE-------------VRVRSIQAHDVDVEEAKAGQRVGLALK---GVEKEEIERGDWLLKP 255 (447)
T ss_pred EEeeeeEEECCEEEEecCCCe-------------EEEEeeeecCcchhhccccceeeeecC---CCCHHHhhcccEeccC
Confidence 999999999999999999998 999999999999999999999999994 5678899999999999
Q ss_pred CCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCEE
Q psy1177 163 GALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKI 242 (283)
Q Consensus 163 g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr~ 242 (283)
+.++++ +.+++.+.|.+.. ..++.+|+.+|||+|+.++.|++..++++ +++.+.+|+..-.++++
T Consensus 256 ~~~~v~-~~~~~~~~i~~~~-------------~~~l~~~~~~hi~~g~~~~~~~i~~l~~~-~~l~~~k~i~~~~~~~l 320 (447)
T COG3276 256 EPLEVT-TRLIVELEIDPLF-------------KKTLKQGQPVHIHVGLRSVTGRIVPLEKN-AELNLVKPIALGDNDRL 320 (447)
T ss_pred CCCCcc-eEEEEEEEecccc-------------ccccCCCceEEEEEeccccceEeeecccc-ceeeeecccccccCceE
Confidence 998664 6899999987643 68999999999999999999999999876 99999999999999999
Q ss_pred EEEeecCCCcEEEE-EEEecCccCcc
Q psy1177 243 ALSRRVEKHWSWIE-GTVSAKVLSTR 267 (283)
Q Consensus 243 ii~R~~~~~~~tiG-G~v~~~~~~~~ 267 (283)
++| .. ++..+.+ ++|+....+.+
T Consensus 321 ~lr-~~-~a~~~~~g~rvl~~~~~~~ 344 (447)
T COG3276 321 VLR-DN-SAVIKLAGARVLSLNLPLR 344 (447)
T ss_pred EEE-cc-cceeeeccceEEecCCCCC
Confidence 995 44 5567777 78888777766
No 11
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-39 Score=295.65 Aligned_cols=223 Identities=22% Similarity=0.272 Sum_probs=200.3
Q ss_pred hhHHHHHHHHHhcCCC--CCCcEEEeecCCCC--------CHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCc
Q psy1177 2 QVKYVTQKWRLERTVA--EGAPVIPISAQLKY--------NIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCE 71 (283)
Q Consensus 2 ~~~~~eIr~~l~~t~~--~~~piIpvSA~~g~--------nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~ 71 (283)
+.+..|+|++|+.++| +++|||..||+... .|.+|++++++++|.|+|+.++||+|||.++|+|.|
T Consensus 148 elVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsg---- 223 (394)
T COG0050 148 ELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISG---- 223 (394)
T ss_pred HHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcC----
Confidence 5678899999998877 58999999998643 488999999999999999999999999999999976
Q ss_pred ccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcccc
Q psy1177 72 VDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRA 151 (283)
Q Consensus 72 ~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~ 151 (283)
|||||||+|++|.+++||+++|. +.+. +.++.|.+++||.+.++++.||++|++.| .++.|+
T Consensus 224 ----rgtvvtGrVeRG~lkvg~eveiv-G~~~----------~~kttvtgvemfrk~ld~~~AGdnvg~ll---Rg~~r~ 285 (394)
T COG0050 224 ----RGTVVTGRVERGILKVGEEVEIV-GIKE----------TQKTTVTGVEMFRKLLDEGQAGDNVGVLL---RGVKRE 285 (394)
T ss_pred ----ceeEEEEEEeeeeeccCCEEEEe-cccc----------cceeEEEhHHHHHHHHhccccCCCcceEE---Eecccc
Confidence 68999999999999999999996 5543 34589999999999999999999999988 789999
Q ss_pred ccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC-------C
Q psy1177 152 DRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA-------D 224 (283)
Q Consensus 152 di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~-------~ 224 (283)
++.|||||++||++.+- +.|++++|.|++.+|+| ..|+.++++.++++.|+++.+.+.+..+ |
T Consensus 286 ~veRGqvLakpgsi~ph-~kfeaevyvL~keeggr---------htpff~~yrpqfyfRttDVtg~i~l~eg~emvmpgd 355 (394)
T COG0050 286 DVERGQVLAKPGSIKPH-TKFEAEVYVLSKEEGGR---------HTPFFHGYRPQFYFRTTDVTGAITLPEGVEMVMPGD 355 (394)
T ss_pred ceecceEeecCCccccc-ceeeEEEEEEecccCCC---------CCCcccCccceeEEEeeeeeeeEeccCCcceecCCC
Confidence 99999999999999875 59999999999999887 7899999999999999999998876433 3
Q ss_pred --eEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEe
Q psy1177 225 --LAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 225 --~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~ 260 (283)
.+.+.|..|++++.|+||.|| . ..||+| |.|.
T Consensus 356 nv~~~veLi~pia~e~G~rFaIr-e---GgrtvgaGvV~ 390 (394)
T COG0050 356 NVKMVVELIHPIAMEEGLRFAIR-E---GGRTVGAGVVT 390 (394)
T ss_pred ceEEEEEEeeeeecCCCCEEEEE-e---CCeeeeeeEEe
Confidence 677899999999999999995 3 359999 9873
No 12
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.3e-37 Score=299.89 Aligned_cols=219 Identities=20% Similarity=0.206 Sum_probs=190.1
Q ss_pred HHHHHHHHhcCCC--CCCcEEEeecCCCC----------CHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcc
Q psy1177 5 YVTQKWRLERTVA--EGAPVIPISAQLKY----------NIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEV 72 (283)
Q Consensus 5 ~~eIr~~l~~t~~--~~~piIpvSA~~g~----------nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~ 72 (283)
.++++++++.+.+ +++|++|+||++|+ ++++|+++|++.+|.|.++.++||||+|||+|+++|.
T Consensus 151 ~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~---- 226 (396)
T PRK12735 151 EMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGR---- 226 (396)
T ss_pred HHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCc----
Confidence 3467788887766 46999999999995 6899999999878888888899999999999999764
Q ss_pred cCCcceEEEEEEEeeEeeCCCEEEEecCc--eeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccc
Q psy1177 73 DDLKGGVAGGSILRGVLKVGMEIEVRPGL--VSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCR 150 (283)
Q Consensus 73 ~~~rGtVvtGtv~sG~l~vGD~v~i~P~~--~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r 150 (283)
|||++|+|.+|++++||+|.++|.+ .. ++|++||+|++++++|.|||+|+++| .++++
T Consensus 227 ----Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~-------------~~VksI~~~~~~v~~a~aGd~v~l~L---~~i~~ 286 (396)
T PRK12735 227 ----GTVVTGRVERGIVKVGDEVEIVGIKETQK-------------TTVTGVEMFRKLLDEGQAGDNVGVLL---RGTKR 286 (396)
T ss_pred ----eEEEEEEEEecEEeCCCEEEEecCCCCeE-------------EEEEEEEECCeEeCEECCCCEEEEEe---CCCcH
Confidence 7999999999999999999999963 34 89999999999999999999999998 46777
Q ss_pred cccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC-------
Q psy1177 151 ADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA------- 223 (283)
Q Consensus 151 ~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~------- 223 (283)
.++.||+||++++.++++ +.|+|++.||+...|++ ..+|++|+++++|+||.++.|++...+.
T Consensus 287 ~~i~rG~vl~~~~~~~~~-~~f~a~i~vl~~~~~~~---------~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g 356 (396)
T PRK12735 287 EDVERGQVLAKPGSIKPH-TKFEAEVYVLSKEEGGR---------HTPFFNGYRPQFYFRTTDVTGTIELPEGVEMVMPG 356 (396)
T ss_pred HHCCcceEEEcCCCCCcc-eEEEEEEEEEecccCCC---------CCcccCCCeeEEEeccceEEEEEEccCCCceeCCC
Confidence 899999999999877664 79999999998644332 4789999999999999999999986532
Q ss_pred --CeEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEec
Q psy1177 224 --DLAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 224 --~~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
..|+|+|++|+|+++|+||++| .. .+|+| |.|+.
T Consensus 357 ~~a~v~l~~~~p~~~~~~~rfilR-~~---g~tv~~G~V~~ 393 (396)
T PRK12735 357 DNVKMTVELIAPIAMEEGLRFAIR-EG---GRTVGAGVVAK 393 (396)
T ss_pred CEEEEEEEECceEEEeECCEEEEE-cC---CcEEEEEEEEE
Confidence 2799999999999999999995 32 37999 99854
No 13
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.8e-37 Score=296.03 Aligned_cols=220 Identities=20% Similarity=0.209 Sum_probs=190.1
Q ss_pred HHHHHHHHhcCCC--CCCcEEEeecCCCC----------CHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcc
Q psy1177 5 YVTQKWRLERTVA--EGAPVIPISAQLKY----------NIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEV 72 (283)
Q Consensus 5 ~~eIr~~l~~t~~--~~~piIpvSA~~g~----------nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~ 72 (283)
.++++++|+.+++ +++|++|+||++|. ++++|+++|++.++.|.|+.++|||||||++|+++|.
T Consensus 151 ~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~---- 226 (396)
T PRK00049 151 EMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGR---- 226 (396)
T ss_pred HHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCc----
Confidence 3567788887766 67999999999986 5789999999878888888899999999999999764
Q ss_pred cCCcceEEEEEEEeeEeeCCCEEEEecC--ceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccc
Q psy1177 73 DDLKGGVAGGSILRGVLKVGMEIEVRPG--LVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCR 150 (283)
Q Consensus 73 ~~~rGtVvtGtv~sG~l~vGD~v~i~P~--~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r 150 (283)
|||++|+|.+|.+++||+|.++|. +.. ++|+|||++++++++|.|||+|+++| .++++
T Consensus 227 ----G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~-------------~~VksI~~~~~~~~~a~~Gd~v~l~l---~~i~~ 286 (396)
T PRK00049 227 ----GTVVTGRVERGIIKVGEEVEIVGIRDTQK-------------TTVTGVEMFRKLLDEGQAGDNVGALL---RGIKR 286 (396)
T ss_pred ----eEEEEEEEeeeEEecCCEEEEeecCCCce-------------EEEEEEEECCcEeCEEcCCCEEEEEe---CCCCH
Confidence 799999999999999999999986 444 89999999999999999999999998 46777
Q ss_pred cccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC-------
Q psy1177 151 ADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA------- 223 (283)
Q Consensus 151 ~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~------- 223 (283)
.|+.||+||++++.++++ ..|+|++.+|+...|++ ..+|++|+++++|+||+++.|+|.+.+.
T Consensus 287 ~~i~~G~vl~~~~~~~~~-~~f~a~i~vl~~~~~g~---------~~~i~~g~~~~~~~~t~~~~~~i~l~~~~~~l~~g 356 (396)
T PRK00049 287 EDVERGQVLAKPGSITPH-TKFEAEVYVLSKEEGGR---------HTPFFNGYRPQFYFRTTDVTGVIELPEGVEMVMPG 356 (396)
T ss_pred HHCCcceEEecCCCCCcc-eEEEEEEEEEecCcCCC---------CCcccCCCEEEEEEecCcEEEEEEecCCCcccCCC
Confidence 899999999999877664 69999999998543332 5799999999999999999999965421
Q ss_pred --CeEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEecC
Q psy1177 224 --DLAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSAK 262 (283)
Q Consensus 224 --~~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~~ 262 (283)
..|+|+|++|+|+++|+||+|| +. .+|+| |+|++-
T Consensus 357 ~~a~v~i~~~~p~~~e~~~RfilR-~~---g~t~~~G~V~~v 394 (396)
T PRK00049 357 DNVEMTVELIAPIAMEEGLRFAIR-EG---GRTVGAGVVTKI 394 (396)
T ss_pred CEEEEEEEECceEEEeeCCEEEEe-cC---CcEEEEEEEEEe
Confidence 2799999999999999999995 32 37999 998653
No 14
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=4.2e-37 Score=296.01 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=189.0
Q ss_pred HHHHHHHHhcCCC--CCCcEEEeecCCCC--------CHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccC
Q psy1177 5 YVTQKWRLERTVA--EGAPVIPISAQLKY--------NIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDD 74 (283)
Q Consensus 5 ~~eIr~~l~~t~~--~~~piIpvSA~~g~--------nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~ 74 (283)
.++++++++...+ +++|+||+||++|. ++.+|+++|++.++.|.++.++|||||||++|+++|.
T Consensus 151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~------ 224 (394)
T TIGR00485 151 EMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGR------ 224 (394)
T ss_pred HHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCc------
Confidence 3467888887766 45999999999885 4678999999877888888899999999999999764
Q ss_pred CcceEEEEEEEeeEeeCCCEEEEecC--ceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccc
Q psy1177 75 LKGGVAGGSILRGVLKVGMEIEVRPG--LVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRAD 152 (283)
Q Consensus 75 ~rGtVvtGtv~sG~l~vGD~v~i~P~--~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~d 152 (283)
|||++|+|.+|.+++||+|.++|. +.. ++|++||++++++++|.|||+|+|+| .++++.+
T Consensus 225 --G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~-------------~~VksI~~~~~~~~~a~aGd~v~l~l---~~i~~~~ 286 (394)
T TIGR00485 225 --GTVVTGRVERGIVKVGEEVEIVGLKDTRK-------------TTVTGVEMFRKELDEGRAGDNVGLLL---RGIKREE 286 (394)
T ss_pred --eEEEEEEEEeeEEeCCCEEEEecCCCCcE-------------EEEEEEEECCeEEEEECCCCEEEEEe---CCccHHH
Confidence 799999999999999999999985 444 89999999999999999999999988 4576779
Q ss_pred cccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC---------
Q psy1177 153 RLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA--------- 223 (283)
Q Consensus 153 i~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~--------- 223 (283)
+.||+||++++.++++ +.|+|++.||+...|++ ..+|++|+++++|+||.++.|++..++.
T Consensus 287 i~rG~vl~~~~~~~~~-~~f~a~i~vl~~~~g~~---------~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~ 356 (394)
T TIGR00485 287 IERGMVLAKPGSIKPH-TKFEAEVYVLKKEEGGR---------HTPFFSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDN 356 (394)
T ss_pred CCccEEEecCCCCCcc-eEEEEEEEEEecCCCCC---------CCccccCceEEEEEecceEEEEEEecCCcceeCCCCE
Confidence 9999999999877664 79999999998654443 5799999999999999999999987542
Q ss_pred CeEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEec
Q psy1177 224 DLAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 224 ~~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
..|+|+|++|+|+++++||++| .. .+|+| |.|+.
T Consensus 357 a~v~~~~~~p~~~~~~~rfilR-~~---g~tv~~G~V~~ 391 (394)
T TIGR00485 357 VKMTVELISPIALEQGMRFAIR-EG---GRTVGAGVVSK 391 (394)
T ss_pred EEEEEEECceEEEeECCEEEEe-cC---CcEEEEEEEEE
Confidence 2799999999999999999995 32 38999 98854
No 15
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.4e-37 Score=303.17 Aligned_cols=220 Identities=22% Similarity=0.229 Sum_probs=189.2
Q ss_pred HHHHHHHhcCCC--CCCcEEEeecCCCCC------------------HHHHHHHHHhhCCCCCCCCCCCceEEEEEEeec
Q psy1177 6 VTQKWRLERTVA--EGAPVIPISAQLKYN------------------IEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDV 65 (283)
Q Consensus 6 ~eIr~~l~~t~~--~~~piIpvSA~~g~n------------------I~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V 65 (283)
++++++|+.+++ +++|+||+||++|+| +++|+++|++.++.|.|+.++|||||||++|++
T Consensus 221 ~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v 300 (478)
T PLN03126 221 LEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSI 300 (478)
T ss_pred HHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEe
Confidence 467788888766 489999999999853 568999999867788888899999999999999
Q ss_pred CCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccC
Q psy1177 66 NKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIE 145 (283)
Q Consensus 66 ~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld 145 (283)
+|. |||++|+|++|.+++||+|.++|.+.. ..++|++||++++++++|.|||+|+|+|
T Consensus 301 ~g~--------GtVv~G~V~sG~i~~Gd~v~i~p~~~~-----------~~~~VksI~~~~~~v~~A~aG~~v~l~L--- 358 (478)
T PLN03126 301 TGR--------GTVATGRVERGTVKVGETVDIVGLRET-----------RSTTVTGVEMFQKILDEALAGDNVGLLL--- 358 (478)
T ss_pred CCc--------eEEEEEEEEcCeEecCCEEEEecCCCc-----------eEEEEEEEEECCeECCEEeCCceeeeec---
Confidence 764 799999999999999999999997521 1189999999999999999999999998
Q ss_pred CCccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC--
Q psy1177 146 PTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA-- 223 (283)
Q Consensus 146 ~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~-- 223 (283)
.++++.|+.||+||+.++.++++ +.|+|+++||+...|++ ..||++|+++++|+||.++.|+|..+..
T Consensus 359 ~~i~~~di~rG~VL~~~~~~~~~-~~F~A~i~vL~~~~gg~---------~~~I~~G~~~~lhigt~~~~~~I~~i~~~~ 428 (478)
T PLN03126 359 RGIQKADIQRGMVLAKPGSITPH-TKFEAIVYVLKKEEGGR---------HSPFFAGYRPQFYMRTTDVTGKVTSIMNDK 428 (478)
T ss_pred cCCcHHHcCCccEEecCCCCCce-EEEEEEEEEecccccCC---------cccccCCcEEEEEEEecEEEEEEEEEeccc
Confidence 46777899999999999876664 69999999998654333 5799999999999999999999998852
Q ss_pred ------------CeEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEec
Q psy1177 224 ------------DLAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 224 ------------~~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
..|+|+|++|+|+++++||++| .. .+|+| |+|..
T Consensus 429 ~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR-~~---~~Tva~G~V~~ 475 (478)
T PLN03126 429 DEESKMVMPGDRVKMVVELIVPVACEQGMRFAIR-EG---GKTVGAGVIQS 475 (478)
T ss_pred CCCccEeCCCCEEEEEEEECCeEEEccCCEEEEe-cC---CceEEEEEEEE
Confidence 1688999999999999999995 32 38999 98854
No 16
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=3e-37 Score=301.64 Aligned_cols=222 Identities=23% Similarity=0.253 Sum_probs=187.0
Q ss_pred HHHHHHHhcCCC--CCCcEEEeecC---CCCC-------HHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCccc
Q psy1177 6 VTQKWRLERTVA--EGAPVIPISAQ---LKYN-------IEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVD 73 (283)
Q Consensus 6 ~eIr~~l~~t~~--~~~piIpvSA~---~g~n-------I~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~ 73 (283)
+++++++..+.+ +++|+||+||+ +|+| +++|+++|++.+|.|.|+.++|||||||++|+++|.
T Consensus 201 ~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~----- 275 (447)
T PLN03127 201 MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGR----- 275 (447)
T ss_pred HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCc-----
Confidence 356677775554 57999999987 5556 789999999888888888899999999999999774
Q ss_pred CCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcccccc
Q psy1177 74 DLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADR 153 (283)
Q Consensus 74 ~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di 153 (283)
|||++|+|.+|.+++||+|.++|.... | ...++|++||+|++++++|.|||+|+++| .++++.++
T Consensus 276 ---GtVvtG~v~~G~i~~Gd~v~i~p~~~~----g-----~~~~~VksI~~~~~~v~~a~aGd~v~l~L---~~i~~~~i 340 (447)
T PLN03127 276 ---GTVATGRVEQGTIKVGEEVEIVGLRPG----G-----PLKTTVTGVEMFKKILDQGQAGDNVGLLL---RGLKREDV 340 (447)
T ss_pred ---eEEEEEEEEccEEecCCEEEEcccCCC----C-----cEEEEEEEEEEECcEeCEEcCCCEEEEEe---CCCCHHHC
Confidence 799999999999999999999975210 0 01299999999999999999999999998 46888899
Q ss_pred ccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC---------C
Q psy1177 154 LVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA---------D 224 (283)
Q Consensus 154 ~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~---------~ 224 (283)
.||+||++++.++ .++.|+|+++||+...|++ ..||.+|+++++|+||+++.|+|...+. .
T Consensus 341 ~rG~Vl~~~~~~~-~~~~F~A~i~vl~~~~gg~---------~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~gd~a 410 (447)
T PLN03127 341 QRGQVICKPGSIK-TYKKFEAEIYVLTKDEGGR---------HTPFFSNYRPQFYLRTADVTGKVELPEGVKMVMPGDNV 410 (447)
T ss_pred CCccEEecCCCCc-eeEEEEEEEEEEccccccc---------CcccccCceeEEEeeecceeEEEEeccCccccCCCCEE
Confidence 9999999997764 4679999999998654443 5789999999999999999999986532 2
Q ss_pred eEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEec
Q psy1177 225 LAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 225 ~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
.|+|+|++|+|+++|+||++| .. .+|+| |+|..
T Consensus 411 ~v~l~~~~p~~le~g~RfilR-~~---g~Tvg~G~V~~ 444 (447)
T PLN03127 411 TAVFELISPVPLEPGQRFALR-EG---GRTVGAGVVSK 444 (447)
T ss_pred EEEEEECceEEEeeCCEEEEE-eC---CcEEEEEEEEE
Confidence 799999999999999999995 42 27999 98843
No 17
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=3.1e-37 Score=299.29 Aligned_cols=217 Identities=22% Similarity=0.232 Sum_probs=189.8
Q ss_pred HHHHHHHHhcCCCC--CCcEEEeecCCCCCHH------------HHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCC
Q psy1177 5 YVTQKWRLERTVAE--GAPVIPISAQLKYNIE------------VLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGC 70 (283)
Q Consensus 5 ~~eIr~~l~~t~~~--~~piIpvSA~~g~nI~------------~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~ 70 (283)
.++++++++..++. ++|++|+||++|+||+ +|+++|+. ++.|.++.++|||||||++|.++|.
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~~~g~-- 239 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEKPTDKPLRIPIQDVYSISGV-- 239 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCccccCCCcEEEEEEEEeeCCC--
Confidence 35677777766654 6899999999999996 49999985 8888888899999999999999875
Q ss_pred cccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccc
Q psy1177 71 EVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCR 150 (283)
Q Consensus 71 ~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r 150 (283)
|||++|+|.+|.+++||+|.++|++.. ++|++||+|++++++|.|||+|+++| .++++
T Consensus 240 ------G~vv~G~v~~G~v~~Gd~v~i~P~~~~-------------~~VksI~~~~~~~~~a~aG~~v~i~l---~~~~~ 297 (425)
T PRK12317 240 ------GTVPVGRVETGVLKVGDKVVFMPAGVV-------------GEVKSIEMHHEELPQAEPGDNIGFNV---RGVGK 297 (425)
T ss_pred ------eEEEEEEEeeccEecCCEEEECCCCCe-------------EEEEEEEECCcccCEECCCCeEEEEE---CCCCH
Confidence 799999999999999999999999887 99999999999999999999999988 45777
Q ss_pred cccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC-------
Q psy1177 151 ADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA------- 223 (283)
Q Consensus 151 ~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~------- 223 (283)
.++.||+||+.++..|++.+.|+|++.||+. ..+++.|+.+.+|+||+++.|+|..+..
T Consensus 298 ~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~--------------~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~ 363 (425)
T PRK12317 298 KDIKRGDVCGHPDNPPTVAEEFTAQIVVLQH--------------PSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTG 363 (425)
T ss_pred HHccCccEecCCCCCCCcccEEEEEEEEECC--------------CCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccc
Confidence 8999999999998877777899999999973 4789999999999999999999987631
Q ss_pred ---------------CeEEEEeCCeEecccC------CEEEEEeecCCCcEEEE-EEEecCcc
Q psy1177 224 ---------------DLAKISLTNPVCTEVN------EKIALSRRVEKHWSWIE-GTVSAKVL 264 (283)
Q Consensus 224 ---------------~~~~l~L~~Pv~~~~g------dr~ii~R~~~~~~~tiG-G~v~~~~~ 264 (283)
..|+|.|++|+|++++ +||+|| +. .+|+| |.|.+...
T Consensus 364 ~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~~~~~lgrfilr-~~---g~tv~~G~i~~v~~ 422 (425)
T PRK12317 364 QVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIPQLGRFAIR-DM---GQTIAAGMVIDVKP 422 (425)
T ss_pred cccCCCCcEECCCCEEEEEEEECCeeEEEeCCcCCCCccEEEE-EC---CCeEEEEEEEEecc
Confidence 1788999999999986 799995 42 27999 99876653
No 18
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=5.7e-37 Score=297.63 Aligned_cols=217 Identities=20% Similarity=0.239 Sum_probs=189.2
Q ss_pred HHHHHHHHHhcCCC--CCCcEEEeecCCCCCHH------------HHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCC
Q psy1177 4 KYVTQKWRLERTVA--EGAPVIPISAQLKYNIE------------VLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPG 69 (283)
Q Consensus 4 ~~~eIr~~l~~t~~--~~~piIpvSA~~g~nI~------------~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G 69 (283)
..++++++++..++ ++.+++|+||++|+||+ +|+++|++ ++.|.++.++||||+||++|.++|.
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~g~- 241 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEKPTDKPLRIPIQDVYSITGV- 241 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCCccCCCcEEEEEEEEecCCC-
Confidence 34567778876665 46899999999999997 59999985 8888888889999999999999775
Q ss_pred CcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcc
Q psy1177 70 CEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLC 149 (283)
Q Consensus 70 ~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~ 149 (283)
|||++|+|.+|.+++||+|.++|++.. ++|++||+|++++++|.|||+|+++| .+++
T Consensus 242 -------G~vv~G~v~~G~i~~gd~v~i~P~~~~-------------~~VksI~~~~~~~~~a~aG~~v~i~l---~~i~ 298 (426)
T TIGR00483 242 -------GTVPVGRVETGVLKPGDKVVFEPAGVS-------------GEVKSIEMHHEQIEQAEPGDNIGFNV---RGVS 298 (426)
T ss_pred -------eEEEEEEEccceeecCCEEEECCCCcE-------------EEEEEEEECCcccCEEcCCCEEEEEE---CCCC
Confidence 799999999999999999999999887 99999999999999999999999998 4677
Q ss_pred ccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC------
Q psy1177 150 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA------ 223 (283)
Q Consensus 150 r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~------ 223 (283)
+.++.||+||+.++..++..+.|+|++.||+. ..|++.|+.+.+|+||.++.|+|..+..
T Consensus 299 ~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~--------------~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t 364 (426)
T TIGR00483 299 KKDIRRGDVCGHPDNPPKVAKEFTAQIVVLQH--------------PGAITVGYTPVFHCHTAQIACRFDELLKKNDPRT 364 (426)
T ss_pred hhhcccceEEecCCCCCceeeEEEEEEEEECC--------------CCccCCCCeEEEEecCcEEEEEEEEEEEEecCcc
Confidence 78999999999998766667799999999973 5799999999999999999999987621
Q ss_pred ----------------CeEEEEeCCeEeccc------CCEEEEEeecCCCcEEEE-EEEecCc
Q psy1177 224 ----------------DLAKISLTNPVCTEV------NEKIALSRRVEKHWSWIE-GTVSAKV 263 (283)
Q Consensus 224 ----------------~~~~l~L~~Pv~~~~------gdr~ii~R~~~~~~~tiG-G~v~~~~ 263 (283)
..|+|+|++|+|++. ++||+|| +. .+|+| |.|.+..
T Consensus 365 ~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~~grf~lr-~~---g~tv~~G~v~~~~ 423 (426)
T TIGR00483 365 GQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEIPPLGRFAIR-DM---GQTVAAGMIIDVD 423 (426)
T ss_pred ccccCCCCceeCCCCEEEEEEEECCeeEEeecccCCCCccEEEE-EC---CCEEEEEEEEEee
Confidence 279999999999996 7899995 43 27999 9987654
No 19
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=4.3e-37 Score=300.50 Aligned_cols=214 Identities=20% Similarity=0.272 Sum_probs=185.0
Q ss_pred HHHHHHHHhcCCC--CCCcEEEeecCCCCCHH------------HHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCC
Q psy1177 5 YVTQKWRLERTVA--EGAPVIPISAQLKYNIE------------VLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGC 70 (283)
Q Consensus 5 ~~eIr~~l~~t~~--~~~piIpvSA~~g~nI~------------~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~ 70 (283)
.++|+++|..+++ +++|+||+||++|+||. +|+++|++ ++.|.++.++|||||||++|+++|.
T Consensus 171 ~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~-~~~~~~~~~~p~r~~I~~v~~v~g~-- 247 (446)
T PTZ00141 171 KKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT-LEPPKRPVDKPLRLPLQDVYKIGGI-- 247 (446)
T ss_pred HHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC-CCCCCcCCCCCeEEEEEEEEecCCc--
Confidence 4455567776666 58999999999999995 59999996 7788888899999999999999775
Q ss_pred cccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccc
Q psy1177 71 EVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCR 150 (283)
Q Consensus 71 ~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r 150 (283)
|||++|+|.+|.+++||+|.++|++.. ++|++||+|++++++|.|||+|+|+| .+++.
T Consensus 248 ------Gtvv~G~V~~G~l~~Gd~v~i~P~~~~-------------~~VksI~~~~~~~~~a~aG~~v~i~L---~~i~~ 305 (446)
T PTZ00141 248 ------GTVPVGRVETGILKPGMVVTFAPSGVT-------------TEVKSVEMHHEQLAEAVPGDNVGFNV---KNVSV 305 (446)
T ss_pred ------eEEEEEEEEcceEecCCEEEEccCCcE-------------EEEEEEEecCcccCEECCCCEEEEEE---CCCCH
Confidence 799999999999999999999999887 99999999999999999999999998 46777
Q ss_pred cccccceeeccCCC-CCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec-------
Q psy1177 151 ADRLVGQVLGAVGA-LPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK------- 222 (283)
Q Consensus 151 ~di~rG~vl~~~g~-l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~------- 222 (283)
.++.||+||+.++. .+...++|+|++.||+. ..+|++|+.+.+|+||.++.|+|..+.
T Consensus 306 ~~v~rG~vl~~~~~~p~~~~~~f~a~i~~l~~--------------~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t 371 (446)
T PTZ00141 306 KDIKRGYVASDSKNDPAKECADFTAQVIVLNH--------------PGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRS 371 (446)
T ss_pred HHcCCceEEecCCCCCCccceEEEEEEEEECC--------------CCccCCCCeEEEEEeceEEEEEEEEEEEEecccc
Confidence 89999999999853 33456799999999973 578999999999999999999998871
Q ss_pred -------------C--CeEEEEeCCeEecc------cCCEEEEEeecCCCcEEEE-EEEec
Q psy1177 223 -------------A--DLAKISLTNPVCTE------VNEKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 223 -------------~--~~~~l~L~~Pv~~~------~gdr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
+ ..|+|+|++|+|++ ..+||+|| +. ..|+| |.|.+
T Consensus 372 ~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~lgrfilr-d~---g~tva~G~I~~ 428 (446)
T PTZ00141 372 GKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFNEYPPLGRFAVR-DM---KQTVAVGVIKS 428 (446)
T ss_pred ccccCCCCcEECCCCEEEEEEEECCceEEeecccCCCCccEEEE-EC---CCEEEEEEEEE
Confidence 1 28899999999999 57899995 43 27999 98855
No 20
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.5e-36 Score=293.57 Aligned_cols=220 Identities=21% Similarity=0.234 Sum_probs=189.6
Q ss_pred HHHHHHHHhcCCCC--CCcEEEeecCCCCC------------------HHHHHHHHHhhCCCCCCCCCCCceEEEEEEee
Q psy1177 5 YVTQKWRLERTVAE--GAPVIPISAQLKYN------------------IEVLCEYITKKIPIPIRDFTSSPRLIVIRSFD 64 (283)
Q Consensus 5 ~~eIr~~l~~t~~~--~~piIpvSA~~g~n------------------I~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~ 64 (283)
.++++++|+.++++ ++|++|+||++|+| +++|+++|++.++.|.++.++|||||||++|.
T Consensus 151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~ 230 (409)
T CHL00071 151 ELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFS 230 (409)
T ss_pred HHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEE
Confidence 35777888877663 59999999999973 58999999987888888889999999999999
Q ss_pred cCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecC--ceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEec
Q psy1177 65 VNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPG--LVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGT 142 (283)
Q Consensus 65 V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~--~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l 142 (283)
++|. |+|++|+|.+|.+++||+|.++|. +.. ++|++||++++++++|.|||+|+|+|
T Consensus 231 ~~g~--------G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~-------------~~VksI~~~~~~v~~a~aGd~v~i~l 289 (409)
T CHL00071 231 ITGR--------GTVATGRIERGTVKVGDTVEIVGLRETKT-------------TTVTGLEMFQKTLDEGLAGDNVGILL 289 (409)
T ss_pred eCCC--------eEEEEEEEecCEEeeCCEEEEeeCCCCcE-------------EEEEEEEEcCcCCCEECCCceeEEEE
Confidence 9764 799999999999999999999874 333 89999999999999999999999988
Q ss_pred ccCCCccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec
Q psy1177 143 KIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK 222 (283)
Q Consensus 143 ~ld~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~ 222 (283)
.++++.++.+|+||+.++.+++ .+.|+|++.||+...|++ ..||.+|+.+++|+||.++.|+|..+.
T Consensus 290 ---~~i~~~~i~~G~vl~~~~~~~~-~~~f~a~i~~l~~~~~~~---------~~~i~~g~~~~~~~gt~~~~~~i~~i~ 356 (409)
T CHL00071 290 ---RGIQKEDIERGMVLAKPGTITP-HTKFEAQVYILTKEEGGR---------HTPFFPGYRPQFYVRTTDVTGKIESFT 356 (409)
T ss_pred ---cCCCHHHcCCeEEEecCCCCCc-ceEEEEEEEEEecccCCc---------cccccCCceEEEEEcccEEEEEEEEEc
Confidence 3577789999999999987655 579999999998643221 578999999999999999999999885
Q ss_pred C--------------CeEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEecC
Q psy1177 223 A--------------DLAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSAK 262 (283)
Q Consensus 223 ~--------------~~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~~ 262 (283)
. ..|+|+|++|+|++.++||+|| +. ++|+| |.|++.
T Consensus 357 ~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR-~~---~~tig~G~V~~~ 407 (409)
T CHL00071 357 ADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIR-EG---GRTVGAGVVSKI 407 (409)
T ss_pred ccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEEe-cC---CeEEEEEEEEEe
Confidence 3 2799999999999999999995 32 58999 998653
No 21
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.6e-35 Score=288.05 Aligned_cols=214 Identities=18% Similarity=0.230 Sum_probs=183.6
Q ss_pred HHHHHHHHhcCCC--CCCcEEEeecCCCCCHH------------HHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCC
Q psy1177 5 YVTQKWRLERTVA--EGAPVIPISAQLKYNIE------------VLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGC 70 (283)
Q Consensus 5 ~~eIr~~l~~t~~--~~~piIpvSA~~g~nI~------------~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~ 70 (283)
.++++++++..++ +++|+||+||++|+||. +|+++|++ ++.|.|+.+.||||||+++|.++|.
T Consensus 171 ~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~~~~~plr~~I~~v~~~~g~-- 247 (447)
T PLN00043 171 VKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGI-- 247 (447)
T ss_pred HHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCccccCCCcEEEEEEEEEeCCc--
Confidence 3445577776555 57999999999999983 69999996 8888888999999999999999764
Q ss_pred cccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccc
Q psy1177 71 EVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCR 150 (283)
Q Consensus 71 ~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r 150 (283)
|+|++|+|++|.+++||+|.++|++.. ++|++||++++++++|.|||+|+|+| .++++
T Consensus 248 ------G~vv~G~V~~G~l~~Gd~v~~~P~~~~-------------~~VksI~~~~~~v~~a~aGd~v~i~l---~~~~~ 305 (447)
T PLN00043 248 ------GTVPVGRVETGVIKPGMVVTFGPTGLT-------------TEVKSVEMHHESLQEALPGDNVGFNV---KNVAV 305 (447)
T ss_pred ------EEEEEEEEECCEEeeCCEEEEcCCCCE-------------EEEEEEEECCeEeCEecCCCeEEEEE---CCCCH
Confidence 799999999999999999999999887 99999999999999999999999998 46777
Q ss_pred cccccceeeccC-CCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec-------
Q psy1177 151 ADRLVGQVLGAV-GALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK------- 222 (283)
Q Consensus 151 ~di~rG~vl~~~-g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~------- 222 (283)
.++.||+||+.+ +..+...+.|+|+++||+. ..++..|+.+.+|++|+.+.|+|..+.
T Consensus 306 ~~i~rG~vl~~~~~~p~~~~~~F~A~i~~l~~--------------~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t 371 (447)
T PLN00043 306 KDLKRGYVASNSKDDPAKEAANFTSQVIIMNH--------------PGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRS 371 (447)
T ss_pred hhCCCccEEccCCCCCCccccEEEEEEEEECC--------------CCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCC
Confidence 899999999997 4554667899999999973 578999999999999999999987641
Q ss_pred -----C----------CeEEEEeCCeEeccc------CCEEEEEeecCCCcEEEE-EEEec
Q psy1177 223 -----A----------DLAKISLTNPVCTEV------NEKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 223 -----~----------~~~~l~L~~Pv~~~~------gdr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
. ..|+|.|.+|+|++. ..||+|| +. ..|+| |.|..
T Consensus 372 ~~~~~~~p~~l~~~~~a~v~i~~~~pi~~e~~~~~~~lGrf~lr-d~---~~Tva~G~v~~ 428 (447)
T PLN00043 372 GKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR-DM---RQTVAVGVIKS 428 (447)
T ss_pred ccccccCcccccCCCEEEEEEEECCcEEEEecccCCCCceEEEE-EC---CCeEEEEEEEE
Confidence 0 178899999999995 5699995 43 37999 98844
No 22
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=2.9e-34 Score=277.59 Aligned_cols=210 Identities=20% Similarity=0.218 Sum_probs=179.6
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHH------------HHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCccc
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIE------------VLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVD 73 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~------------~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~ 73 (283)
+++.++++.++++++|+||+||++|+||+ +|+++|+. ++.|.++.++|||||||++|.++.+
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~~~~~p~r~~i~~v~~~~~~----- 231 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERDAQDLPLRFPVQYVNRPNLD----- 231 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCCcCCCCcccceEEEeecCCC-----
Confidence 44556677788889999999999999986 48999996 8888888889999999999866432
Q ss_pred CCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcccccc
Q psy1177 74 DLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADR 153 (283)
Q Consensus 74 ~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di 153 (283)
+.| ++|||.+|++++||+|.++|++.. ++|++||+|++++++|.|||+|++++.. ..++
T Consensus 232 -~~g--~~G~v~~G~l~~gd~v~i~P~~~~-------------~~VksI~~~~~~~~~a~~G~~v~l~l~~-----~~~i 290 (406)
T TIGR02034 232 -FRG--YAGTIASGSVHVGDEVVVLPSGRS-------------SRVARIVTFDGDLEQARAGQAVTLTLDD-----EIDI 290 (406)
T ss_pred -cEE--EEEEEecceeecCCEEEEeCCCcE-------------EEEEEEEECCcccCEeCCCCEEEEEECC-----cccc
Confidence 234 699999999999999999999887 9999999999999999999999999852 2578
Q ss_pred ccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC----------
Q psy1177 154 LVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA---------- 223 (283)
Q Consensus 154 ~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~---------- 223 (283)
.||+||+.+++.++..+.|+|++.|+. ..+|++|+.+++|+||+++.|+|..+..
T Consensus 291 ~rG~vl~~~~~~~~~~~~f~a~i~~l~---------------~~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~ 355 (406)
T TIGR02034 291 SRGDLLAAADSAPEVADQFAATLVWMA---------------EEPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKG 355 (406)
T ss_pred CCccEEEcCCCCCCcceEEEEEEEEeC---------------hhhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCccc
Confidence 999999999997777789999999986 4689999999999999999999998742
Q ss_pred ----------CeEEEEeCCeEecccCC------EEEEEeecCCCcEEEE-EEE
Q psy1177 224 ----------DLAKISLTNPVCTEVNE------KIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 224 ----------~~~~l~L~~Pv~~~~gd------r~ii~R~~~~~~~tiG-G~v 259 (283)
..|+|+|++|+|++..+ ||+|+... ..+|+| |.|
T Consensus 356 ~~~~l~~~~~~~v~l~~~~p~~~~~~~~~~~lGr~~l~d~~--~~~tva~G~I 406 (406)
T TIGR02034 356 AAKSLELNEIGRVNLSLDEPIAFDPYAENRTTGAFILIDRL--SNRTVGAGMI 406 (406)
T ss_pred CCcccCCCCEEEEEEEECCeeccCcccCCCcceeEEEEECC--CCCeEEEEeC
Confidence 27999999999999877 99884222 247999 864
No 23
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-34 Score=273.32 Aligned_cols=217 Identities=22% Similarity=0.297 Sum_probs=193.1
Q ss_pred hhHHHHHHH----HHhcCCC--CCCcEEEeecCCCCCH------------HHHHHHHHhhCCCCCCCCCCCceEEEEEEe
Q psy1177 2 QVKYVTQKW----RLERTVA--EGAPVIPISAQLKYNI------------EVLCEYITKKIPIPIRDFTSSPRLIVIRSF 63 (283)
Q Consensus 2 ~~~~~eIr~----~l~~t~~--~~~piIpvSA~~g~nI------------~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F 63 (283)
|+||+||++ +++..++ +++++||+||++|+|+ ++|+++|+ .++.|+|..++||||||+.+|
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~~d~Plr~pI~~v~ 240 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDVY 240 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCCCCCCeEeEeeeEE
Confidence 679999984 4454555 4899999999999998 59999999 599999999999999999999
Q ss_pred ecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecc
Q psy1177 64 DVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTK 143 (283)
Q Consensus 64 ~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ 143 (283)
+|.|- |||..|+|++|.|++||.|.++|++.. +.|+||++|++++++|.|||+|++++
T Consensus 241 ~i~~~--------gtv~vGrVEsG~i~~g~~v~~~p~~~~-------------~evksie~~~~~~~~a~~GD~i~~~v- 298 (428)
T COG5256 241 SISGI--------GTVPVGRVESGVIKPGQKVTFMPAGVV-------------GEVKSIEMHHEEISQAEPGDNVGFNV- 298 (428)
T ss_pred EecCC--------ceEEEEEEeeeeeccCCEEEEecCcce-------------EEEeeeeecccccccCCCCCeEEEEe-
Confidence 99775 699999999999999999999999988 99999999999999999999999999
Q ss_pred cCCCccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec-
Q psy1177 144 IEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK- 222 (283)
Q Consensus 144 ld~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~- 222 (283)
+++..+|+.||||+++++..+.+...|.+++..|.. ..+|..|+...+|++|+++.|++..+.
T Consensus 299 --rgv~~~dI~~Gdv~~~~~n~~t~s~~f~a~i~vl~~--------------p~~i~~Gyt~vlh~hta~~a~~~~~l~~ 362 (428)
T COG5256 299 --RGVEKNDIRRGDVIGHSDNPPTVSPEFTAQIIVLWH--------------PGIITSGYTPVLHAHTAQVACRIAELLS 362 (428)
T ss_pred --cCCchhccCCccEeccCCCCcccccceEEEEEEEec--------------CccccCCCccEEEecccceeeeHHHHHH
Confidence 678889999999999999999888899999988873 688999999999999999999995431
Q ss_pred ---C------------------CeEEEEeCCeEecc-------cCCEEEEEeecCCCcEEEE-EEEecC
Q psy1177 223 ---A------------------DLAKISLTNPVCTE-------VNEKIALSRRVEKHWSWIE-GTVSAK 262 (283)
Q Consensus 223 ---~------------------~~~~l~L~~Pv~~~-------~gdr~ii~R~~~~~~~tiG-G~v~~~ 262 (283)
. ..+.++.++|+|++ .| ||+|| +. |+||+ |+|++.
T Consensus 363 k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~e~~~~~~~Lg-rfalr-d~---g~tIA~G~v~~v 426 (428)
T COG5256 363 KLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCLEKVSEIPQLG-RFALR-DM---GQTIAAGKVLEV 426 (428)
T ss_pred hhCcccccccccChhhhhcCceEEEEEEecCceEeeecccCCccc-eEEEE-eC---CCeEEeEEEEec
Confidence 0 17889999999998 57 99995 32 57999 999764
No 24
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.6e-33 Score=277.31 Aligned_cols=213 Identities=20% Similarity=0.187 Sum_probs=179.4
Q ss_pred HHHHHHhcCC-CCCCcEEEeecCCCCCHH------------HHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCccc
Q psy1177 7 TQKWRLERTV-AEGAPVIPISAQLKYNIE------------VLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVD 73 (283)
Q Consensus 7 eIr~~l~~t~-~~~~piIpvSA~~g~nI~------------~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~ 73 (283)
+++++++.+. +.++|+||+||++|+||+ +|+++|+. ++.|.++.++|||||||++|.++.
T Consensus 186 ~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~-i~~~~~~~~~p~r~~I~~v~~~~~------ 258 (474)
T PRK05124 186 DYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLET-VDIQRVVDAQPFRFPVQYVNRPNL------ 258 (474)
T ss_pred HHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhh-cCCCCCCCCCCceeeEEEEEecCC------
Confidence 3445555555 568999999999999985 48888885 888888888999999999975421
Q ss_pred CCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcccccc
Q psy1177 74 DLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADR 153 (283)
Q Consensus 74 ~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di 153 (283)
+++| ++|+|.+|.|++||+|.++|++.. ++|++||+|++++++|.|||+|+|+|.. ..++
T Consensus 259 ~~~g--~~G~V~sG~l~~Gd~v~i~P~~~~-------------~~VksI~~~~~~v~~A~aG~~V~l~L~~-----~~~i 318 (474)
T PRK05124 259 DFRG--YAGTLASGVVKVGDRVKVLPSGKE-------------SNVARIVTFDGDLEEAFAGEAITLVLED-----EIDI 318 (474)
T ss_pred cccc--eEEEEEeEEEecCCEEEEecCCce-------------EEEEEEEEcCccccCcCCCCEEEEEeCC-----cccc
Confidence 1234 589999999999999999999887 9999999999999999999999999852 3578
Q ss_pred ccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC----------
Q psy1177 154 LVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA---------- 223 (283)
Q Consensus 154 ~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~---------- 223 (283)
.||+||+.++..+...+.|+|++.||. ..||++|+.+++|+||.++.|+|..+..
T Consensus 319 ~rG~VL~~~~~~~~~~~~f~a~i~~l~---------------~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~ 383 (474)
T PRK05124 319 SRGDLLVAADEALQAVQHASADVVWMA---------------EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQR 383 (474)
T ss_pred CCccEEECCCCCCccceEEEEEEEEeC---------------CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCccc
Confidence 999999999888777789999999996 4689999999999999999999998741
Q ss_pred ----------CeEEEEeCCeEecccCCE------EEEEeecCCCcEEEE-EEEecCc
Q psy1177 224 ----------DLAKISLTNPVCTEVNEK------IALSRRVEKHWSWIE-GTVSAKV 263 (283)
Q Consensus 224 ----------~~~~l~L~~Pv~~~~gdr------~ii~R~~~~~~~tiG-G~v~~~~ 263 (283)
..|+|+|++|+|+++.++ |+|+.+ ....|+| |.|.++.
T Consensus 384 ~~~~l~~g~~a~v~l~~~~pv~~e~~~~~~~lGRfil~dr--~~~~tva~G~V~~~~ 438 (474)
T PRK05124 384 EAENLPLNGIGLVELTFDEPLVLDPYQQNRVTGGFIFIDR--LTNVTVGAGMVREPL 438 (474)
T ss_pred CccccCCCCEEEEEEEECCeeccccCCcCCcceeEEEEEC--CCCceEEEEEEeccc
Confidence 279999999999999877 998522 2348999 9998876
No 25
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-34 Score=266.14 Aligned_cols=217 Identities=23% Similarity=0.263 Sum_probs=191.6
Q ss_pred hhHHHHHH----HHHhcCCCCCCcEEEeecCCCCCH------------HHHHHHHHhhCCCCCCCCCCCceEEEEEEeec
Q psy1177 2 QVKYVTQK----WRLERTVAEGAPVIPISAQLKYNI------------EVLCEYITKKIPIPIRDFTSSPRLIVIRSFDV 65 (283)
Q Consensus 2 ~~~~~eIr----~~l~~t~~~~~piIpvSA~~g~nI------------~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V 65 (283)
|++|++|+ .|++.+++....+||+||+.|+|+ +.|++.|+. +++......++|||||+ .|
T Consensus 156 e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~-v~i~~~~~~~~~RfPVQ---~V 231 (431)
T COG2895 156 EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILET-VEIADDRSAKAFRFPVQ---YV 231 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhh-ccccccccccceeeceE---Ee
Confidence 78999998 466799999999999999999998 599999996 77766666788999999 57
Q ss_pred CCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccC
Q psy1177 66 NKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIE 145 (283)
Q Consensus 66 ~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld 145 (283)
++|+. |+|| +.|||.+|++++||+|.++|+|+. ++|++|..|+.++++|.||+.|++.|..
T Consensus 232 ~Rp~~---dfRG--yaGtiasG~v~~Gd~vvvlPsG~~-------------s~V~~Ivt~dg~~~~A~aG~aVtl~L~d- 292 (431)
T COG2895 232 NRPNL---DFRG--YAGTIASGSVKVGDEVVVLPSGKT-------------SRVKRIVTFDGELAQASAGEAVTLVLAD- 292 (431)
T ss_pred cCCCC---cccc--cceeeeccceecCCeEEEccCCCe-------------eeEEEEeccCCchhhccCCceEEEEEcc-
Confidence 88875 4557 599999999999999999999999 9999999999999999999999997754
Q ss_pred CCccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC--
Q psy1177 146 PTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA-- 223 (283)
Q Consensus 146 ~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~-- 223 (283)
.+ |+.||+++++++..|.+.+.|+|.++||. +.||.+|++|.+.++|..+.|+|..++.
T Consensus 293 -ei---disRGd~i~~~~~~~~~~~~f~A~vvWm~---------------~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~l 353 (431)
T COG2895 293 -EI---DISRGDLIVAADAPPAVADAFDADVVWMD---------------EEPLLPGRSYDLKIATRTVRARVEEIKHQL 353 (431)
T ss_pred -ee---ecccCcEEEccCCCcchhhhcceeEEEec---------------CCCCCCCceEEEEecceEEEEEeeeeEEEE
Confidence 44 67889999999999998999999999998 6899999999999999999999998752
Q ss_pred ------------------CeEEEEeCCeEecc-------cCCEEEEEeecCCCcEEEE-EEEecCc
Q psy1177 224 ------------------DLAKISLTNPVCTE-------VNEKIALSRRVEKHWSWIE-GTVSAKV 263 (283)
Q Consensus 224 ------------------~~~~l~L~~Pv~~~-------~gdr~ii~R~~~~~~~tiG-G~v~~~~ 263 (283)
..|.|.+.+|++++ .|.+++|+|.. ..|+| |+|....
T Consensus 354 dvntl~~~~a~~l~lN~Ig~v~i~~~~pi~fd~Y~~N~atG~FIlID~~t---n~TVgaGmI~~~l 416 (431)
T COG2895 354 DVNTLEQEGAESLPLNEIGRVRISFDKPIAFDAYAENRATGSFILIDRLT---NGTVGAGMILASL 416 (431)
T ss_pred eccccccccccccCCCcceEEEEecCCceeecccccCcccccEEEEEcCC---CCceeceeeechh
Confidence 38999999999998 58899998653 37999 9996654
No 26
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=7.8e-33 Score=280.78 Aligned_cols=215 Identities=19% Similarity=0.204 Sum_probs=183.3
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHH------------HHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCccc
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIE------------VLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVD 73 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~------------~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~ 73 (283)
++++++++.++++++|+||+||++|+||+ +|+++|+. ++.|.++.++||||||+++|..+-
T Consensus 182 ~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~~------ 254 (632)
T PRK05506 182 ADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET-VEIASDRNLKDFRFPVQYVNRPNL------ 254 (632)
T ss_pred HHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc-CCCCCCcCCCCceeeEEEEEecCC------
Confidence 44556777888899999999999999986 69999996 777777788999999999986431
Q ss_pred CCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcccccc
Q psy1177 74 DLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADR 153 (283)
Q Consensus 74 ~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di 153 (283)
+++| ++|+|.+|.+++||+|.++|++.. ++|+|||+|++++++|.|||+|+|++.. ..++
T Consensus 255 ~~~g--~~G~v~~G~l~~gd~v~i~P~~~~-------------~~VksI~~~~~~~~~a~aG~~v~i~l~~-----~~~i 314 (632)
T PRK05506 255 DFRG--FAGTVASGVVRPGDEVVVLPSGKT-------------SRVKRIVTPDGDLDEAFAGQAVTLTLAD-----EIDI 314 (632)
T ss_pred CceE--EEEEEecceeecCCEEEEcCCCce-------------EEEEEEEECCceeCEEcCCCeEEEEecC-----cccc
Confidence 1134 689999999999999999999877 9999999999999999999999999852 2479
Q ss_pred ccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC----------
Q psy1177 154 LVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA---------- 223 (283)
Q Consensus 154 ~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~---------- 223 (283)
.||+||+++++.+++++.|+|+++||+ ..++.+|+.+++|+||.++.|+|..+..
T Consensus 315 ~rG~vL~~~~~~~~~~~~f~a~i~~l~---------------~~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~ 379 (632)
T PRK05506 315 SRGDMLARADNRPEVADQFDATVVWMA---------------EEPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERL 379 (632)
T ss_pred CCccEEecCCCCCcceeEEEEEEEEec---------------ccccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccC
Confidence 999999999988887889999999997 3568899999999999999999987631
Q ss_pred ----------CeEEEEeCCeEecccCCE------EEEEeecCCCcEEEE-EEEecCcc
Q psy1177 224 ----------DLAKISLTNPVCTEVNEK------IALSRRVEKHWSWIE-GTVSAKVL 264 (283)
Q Consensus 224 ----------~~~~l~L~~Pv~~~~gdr------~ii~R~~~~~~~tiG-G~v~~~~~ 264 (283)
..|+|+|++|+|++++++ |+|+ +. +...|+| |.|+++..
T Consensus 380 ~p~~l~~g~~~~v~l~~~~pi~~e~~~~~~~lGRfilr-dr-~~~~Tva~G~I~~~~~ 435 (632)
T PRK05506 380 AAKTLELNEIGRCNLSTDAPIAFDPYARNRTTGSFILI-DR-LTNATVGAGMIDFALR 435 (632)
T ss_pred CcceeCCCCEEEEEEEECCEEeeeeccccccCceEEEE-ec-cCCceEEEEEECcccc
Confidence 278999999999999877 9995 22 3358999 99977754
No 27
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.98 E-value=3e-32 Score=217.33 Aligned_cols=113 Identities=77% Similarity=1.243 Sum_probs=106.8
Q ss_pred CCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCcee
Q psy1177 50 DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNEL 129 (283)
Q Consensus 50 ~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v 129 (283)
+.++||+|+|.|||+||+||+++++++|||++|+|++|.+++||+|||+|+...+ .+|+..|+|+.++|.||+++++++
T Consensus 1 d~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~-~~~~~~~~pi~T~I~sl~~~~~~l 79 (113)
T cd03688 1 DFTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVK-DEGKIKCRPIFTKIVSLKAENNDL 79 (113)
T ss_pred CCCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeee-cCCCeeEEEEEEEEEEEEecCccc
Confidence 4678999999999999999999999999999999999999999999999987653 367788999999999999999999
Q ss_pred cEEecCceEEEecccCCCccccccccceeeccCC
Q psy1177 130 QFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVG 163 (283)
Q Consensus 130 ~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g 163 (283)
++|.||++|||.+++||+++|+|.++|+|+++|+
T Consensus 80 ~~a~pGgliGvgT~Ldpsltk~D~l~GqV~g~pG 113 (113)
T cd03688 80 QEAVPGGLIGVGTKLDPTLTKADRLVGQVVGEPG 113 (113)
T ss_pred cEEeCCCeEEEccccCccccccceeeEEEeecCC
Confidence 9999999999999999999999999999999975
No 28
>KOG0461|consensus
Probab=99.96 E-value=7.6e-29 Score=230.79 Aligned_cols=218 Identities=20% Similarity=0.198 Sum_probs=180.7
Q ss_pred HHHHHHHhcCCCC-CCcEEEeecCCC----CCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEE
Q psy1177 6 VTQKWRLERTVAE-GAPVIPISAQLK----YNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVA 80 (283)
Q Consensus 6 ~eIr~~l~~t~~~-~~piIpvSA~~g----~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVv 80 (283)
..+++-|+.|.+. |+||+++||..| ++|.+|.++|+..+-.|.||..+||.|+||+||.|+|. |||.
T Consensus 149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQ--------GTV~ 220 (522)
T KOG0461|consen 149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQ--------GTVL 220 (522)
T ss_pred HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccC--------ceEE
Confidence 4455677788874 699999999999 89999999999999999999999999999999999885 7999
Q ss_pred EEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecc-cCCCccccccccceee
Q psy1177 81 GGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTK-IEPTLCRADRLVGQVL 159 (283)
Q Consensus 81 tGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~-ld~~i~r~di~rG~vl 159 (283)
||||++|.+++||+||+..-+.. -||+|||||++++..|.+|+|+|+... .|+. -+.|| +.
T Consensus 221 TGTvl~G~~~ln~~iE~PAL~e~-------------rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~k----lleRg-i~ 282 (522)
T KOG0461|consen 221 TGTVLRGVLRLNTEIEFPALNEK-------------RKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEK----LLERG-IC 282 (522)
T ss_pred eeeEEEeEEecCcEEeecccchh-------------hhhhhHHHHhhhhhhhhcccceeeeeeccCHH----HHhcc-cc
Confidence 99999999999999999655554 799999999999999999999999764 3332 35555 67
Q ss_pred ccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC----------------
Q psy1177 160 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA---------------- 223 (283)
Q Consensus 160 ~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~---------------- 223 (283)
+.||++.+++ ..-+.+.-+... .++++...++|+.+|..+|+|++.++.+
T Consensus 283 ~~pg~Lk~~~-avl~~vepI~yf-------------r~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~ 348 (522)
T KOG0461|consen 283 GPPGTLKSTK-AVLATVEPIQYF-------------RKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYEN 348 (522)
T ss_pred CCCcccceee-eeeEeecchHHH-------------hhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhc
Confidence 8999998876 455555544432 5789999999999999999999998752
Q ss_pred ------------C---eEEEEeCCeEecccCCEEEEEeec----CCCcEEEE-EEEecCc
Q psy1177 224 ------------D---LAKISLTNPVCTEVNEKIALSRRV----EKHWSWIE-GTVSAKV 263 (283)
Q Consensus 224 ------------~---~~~l~L~~Pv~~~~gdr~ii~R~~----~~~~~tiG-G~v~~~~ 263 (283)
+ +|-+.+++||.+.+-...+.++.+ ++.+|++. |++.-..
T Consensus 349 ~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~~i~s~ld~d~h~~~CRlAF~Gi~~~~l 408 (522)
T KOG0461|consen 349 GEFDMLPALLAPCDVIQALFSFEKPVFLPEYSNPIMSALDEDQHGSGCRLAFSGIFSQIL 408 (522)
T ss_pred cccccChhhcCCchheeeeeeecccccCcccccHHHHhhhhhcCCCceEEEeeeehhhhC
Confidence 1 788999999999876666655544 56789999 9875443
No 29
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.92 E-value=4.4e-24 Score=201.23 Aligned_cols=203 Identities=19% Similarity=0.226 Sum_probs=172.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCC-CCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEE
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIR-DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEV 97 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r-~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i 97 (283)
=+||+-+||.+|+|++-|.+.+. .+|...+ +..+||+|+||+.|+|.|. |||+.|+|.+|.+.+||++.+
T Consensus 313 vvPi~~tSsVTg~GldlL~e~f~-~Lp~rr~~~d~g~flmYId~iYsVtGV--------GtVvsGsV~~G~l~~gd~vll 383 (527)
T COG5258 313 VVPIFYTSSVTGEGLDLLDEFFL-LLPKRRRWDDEGPFLMYIDKIYSVTGV--------GTVVSGSVKSGILHVGDTVLL 383 (527)
T ss_pred eEEEEEEecccCccHHHHHHHHH-hCCcccccCCCCCeEEEEEeeEEEeee--------EEEEeeeEEeeeeccCCEEEE
Confidence 36999999999999987777776 4665433 5678999999999999997 699999999999999999999
Q ss_pred ecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeeccCCCCCceeeEEEEEEE
Q psy1177 98 RPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYH 177 (283)
Q Consensus 98 ~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~ 177 (283)
-|-. +|+ -..++|+|||||+-.++.|.||.=+++.+ .+++++++.|||||+++ ..|....+|+|+++
T Consensus 384 GP~~-----~G~----fr~v~vkSIemh~~rvdsa~aG~iig~Al---~gv~~e~lerGMVl~~~-~~pkaVref~AeV~ 450 (527)
T COG5258 384 GPFK-----DGK----FREVVVKSIEMHHYRVDSAKAGSIIGIAL---KGVEKEELERGMVLSAG-ADPKAVREFDAEVL 450 (527)
T ss_pred ccCC-----CCc----EEEEEEEEEEEeeEEeccccCCcEEEEEe---cccCHHHHhcceEecCC-CCchhhheecceEE
Confidence 8842 222 23399999999999999999999999988 58999999999999997 55566679999999
Q ss_pred EeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCC--------eEEEEeC-CeEecccCCEEEEEeec
Q psy1177 178 LLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKAD--------LAKISLT-NPVCTEVNEKIALSRRV 248 (283)
Q Consensus 178 ~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~--------~~~l~L~-~Pv~~~~gdr~ii~R~~ 248 (283)
+|.. +.-++.|+.-.+|+-|....+++..++++ .+.++|. +|=.++.||+|+.| ..
T Consensus 451 vl~H--------------PT~I~aGye~v~H~etI~e~~~f~~id~~~L~~GD~g~vr~~fkyrP~~v~eGQ~fvFR-eG 515 (527)
T COG5258 451 VLRH--------------PTTIRAGYEPVFHYETIREAVYFEEIDKGFLMPGDRGVVRMRFKYRPHHVEEGQKFVFR-EG 515 (527)
T ss_pred EEeC--------------CcEEecCceeeeEeeEeeheeEEEEcccccccCCCcceEEEEEEeCchhhccCcEEEEe-cC
Confidence 9974 67899999999999999999999888653 6788998 99999999999984 43
Q ss_pred CCCcEEEE-EEEecC
Q psy1177 249 EKHWSWIE-GTVSAK 262 (283)
Q Consensus 249 ~~~~~tiG-G~v~~~ 262 (283)
++=| |.|+..
T Consensus 516 ----rskgvG~v~~~ 526 (527)
T COG5258 516 ----RSKGVGRVIRV 526 (527)
T ss_pred ----CCccceEEecc
Confidence 5567 888654
No 30
>KOG0459|consensus
Probab=99.90 E-value=1.2e-22 Score=192.34 Aligned_cols=215 Identities=19% Similarity=0.271 Sum_probs=180.9
Q ss_pred hhHHHHHH----HHHhcCC---CCCCcEEEeecCCCCCHH-------------HHHHHHHhhCCCCCCCCCCCceEEEEE
Q psy1177 2 QVKYVTQK----WRLERTV---AEGAPVIPISAQLKYNIE-------------VLCEYITKKIPIPIRDFTSSPRLIVIR 61 (283)
Q Consensus 2 ~~~~~eIr----~~l~~t~---~~~~piIpvSA~~g~nI~-------------~Ll~~L~~~i~~p~r~~~~~~r~~IdR 61 (283)
++||+|+. .||..++ +.+..++|+|.++|.|+. .++++|++ ++...|+.++||||||..
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI~~ 314 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPVAN 314 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhc-cCcccccCCCCEEeehhh
Confidence 56788777 5776433 367899999999999985 55678886 787889999999999986
Q ss_pred EeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEe
Q psy1177 62 SFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVG 141 (283)
Q Consensus 62 ~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~ 141 (283)
-|. | .||||.|.|+||.++.||.+.++|.... +.|.+|-..+.+++.+.||+++-|.
T Consensus 315 Kyk---------d-mGTvv~GKvEsGsi~kg~~lvvMPnk~~-------------veV~~I~~ddvE~~~~~pGenvk~r 371 (501)
T KOG0459|consen 315 KYK---------D-MGTVVGGKVESGSIKKGQQLVVMPNKTN-------------VEVLGIYSDDVETDRVAPGENVKLR 371 (501)
T ss_pred hcc---------c-cceEEEEEecccceecCCeEEEccCCcc-------------eEEEEEecccceeeeccCCcceEEE
Confidence 543 2 4899999999999999999999998877 9999999999999999999999998
Q ss_pred cccCCCccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEe
Q psy1177 142 TKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLAT 221 (283)
Q Consensus 142 l~ld~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~ 221 (283)
| .++..+|++.|.|||.|.++..+.+.|+|++.+|.. ..=+..|+...+|++|.---+.|.++
T Consensus 372 l---kgieeedi~~GfiL~~~~n~~~s~~~F~aqi~IlE~--------------~sIi~~GY~~VlHIht~ieEv~i~li 434 (501)
T KOG0459|consen 372 L---KGIEEEDISPGFILCSPNNPCKSGRTFDAQIVILEH--------------KSIICAGYSCVLHIHTAVEEVEIKLI 434 (501)
T ss_pred e---cccchhhccCceEEecCCCccccccEEEEEEEEEec--------------CceeccCcceEeeeeeehhheeeeee
Confidence 8 578888999999999999999999999999999973 45689999999999988777777654
Q ss_pred ---cC------------------CeEEEEeCCeEeccc------CCEEEEEeecCCCcEEEE-EEEec
Q psy1177 222 ---KA------------------DLAKISLTNPVCTEV------NEKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 222 ---~~------------------~~~~l~L~~Pv~~~~------gdr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
+. ..|+|+.+.|+|++. =.||.| |+. ..||+ |.|+.
T Consensus 435 ~~idkktg~ksKkrprFvkq~~~~iarl~t~~~iCle~fkd~pqmgRFtL-Rde---gkTIAiGkV~k 498 (501)
T KOG0459|consen 435 HLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPICLETFKDYPQMGRFTL-RDE---GKTIAIGKVLK 498 (501)
T ss_pred eeecccccccccCCCeeecCCcEEEEEEecCCcEehhhcccchhhcceEE-ecC---CcEEEEEEEEe
Confidence 21 178899999999983 239999 453 37999 99964
No 31
>KOG0458|consensus
Probab=99.90 E-value=2e-22 Score=197.82 Aligned_cols=217 Identities=19% Similarity=0.248 Sum_probs=182.4
Q ss_pred hhHHHHHH----HHH-hcCCC--CCCcEEEeecCCCCCH---------------HHHHHHHHhhCCCCCCCCCCCceEEE
Q psy1177 2 QVKYVTQK----WRL-ERTVA--EGAPVIPISAQLKYNI---------------EVLCEYITKKIPIPIRDFTSSPRLIV 59 (283)
Q Consensus 2 ~~~~~eIr----~~l-~~t~~--~~~piIpvSA~~g~nI---------------~~Ll~~L~~~i~~p~r~~~~~~r~~I 59 (283)
|+||+||+ .|| +..+| .++.+||+|+++|+|+ ++|++.|+. +..|.++.++||||+|
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltI 410 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTI 410 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEEh
Confidence 78999998 577 55666 4559999999999997 489999997 8899999999999999
Q ss_pred EEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEE
Q psy1177 60 IRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIG 139 (283)
Q Consensus 60 dR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rva 139 (283)
.++|...+- |..++|+|++|.|.+||.|+++|+... +.|++|++.+++...|.|||.|.
T Consensus 411 sdi~~~~~~--------~~~i~gkiesG~iq~gqkl~i~~s~e~-------------~~vk~l~~~~~~~~~a~AGD~Vs 469 (603)
T KOG0458|consen 411 SDIYPLPSS--------GVSISGKIESGYIQPGQKLYIMTSRED-------------ATVKGLTSNDEPKTWAVAGDNVS 469 (603)
T ss_pred hheeecCCC--------eeEEEEEEeccccccCCEEEEecCcce-------------EEEEeeecCCCcceeEeeCCEEE
Confidence 999977543 567899999999999999999999988 99999999999999999999999
Q ss_pred EecccCCCccccccccceeec-cCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEE
Q psy1177 140 VGTKIEPTLCRADRLVGQVLG-AVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRV 218 (283)
Q Consensus 140 i~l~ld~~i~r~di~rG~vl~-~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v 218 (283)
+.| +++.-+.+..|++++ .|...-+....|.+++.|++- ..|+..|..+.+|+|+...+|++
T Consensus 470 l~L---~~i~~n~v~~g~i~~~~~~~~i~~~~~f~~~~~~f~~--------------~~Pi~~g~~l~l~~~~~~~pa~~ 532 (603)
T KOG0458|consen 470 LKL---PGILPNLVQVGDIADSGPQFPISKTTRFVARITTFDI--------------NLPITKGSPLILHFGSLSEPAVL 532 (603)
T ss_pred Eec---CccChhhcccceeeecCCCccccceeEEEEEEEEeec--------------cccccCCcceEEEeccccchhhh
Confidence 987 456667899999999 666655555689999999972 57999999999999999998888
Q ss_pred EEec----C------------------CeEEEEeCCeEecc------cCCEEEEEeecCCCcEEEE-EEEec
Q psy1177 219 LATK----A------------------DLAKISLTNPVCTE------VNEKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 219 ~~~~----~------------------~~~~l~L~~Pv~~~------~gdr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
..+- + ..+.|.++.|+|.+ .--||++| .. .+||+ |+|..
T Consensus 533 ~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~~~pI~~etf~~~~~lgr~vlr-~~---g~TiAaG~V~~ 600 (603)
T KOG0458|consen 533 KKLTSSINKSTGEIVKKKPRCLTSNQSAIVELETERPICLETFAENRALGRVVLR-KS---GSTIAAGKVTE 600 (603)
T ss_pred hhhhhhhccCCCchhhcccceeccCceeeeeccccCchhhhhhhhchhheeEEEe-cc---CceeeeeeEEe
Confidence 7531 0 16778889999988 22389885 33 37999 99854
No 32
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.86 E-value=2.4e-21 Score=150.59 Aligned_cols=89 Identities=26% Similarity=0.393 Sum_probs=82.1
Q ss_pred CCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecE
Q psy1177 52 TSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQF 131 (283)
Q Consensus 52 ~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~ 131 (283)
++||||||+++|.++|. |+|++|+|++|.+++||+|.++|++.. ++|++||+|++++++
T Consensus 2 ~~p~r~~V~~vf~~~g~--------g~vv~G~v~~G~i~~gd~v~i~P~~~~-------------~~V~sI~~~~~~~~~ 60 (91)
T cd03693 2 DKPLRLPIQDVYKIGGI--------GTVPVGRVETGVLKPGMVVTFAPAGVT-------------GEVKSVEMHHEPLEE 60 (91)
T ss_pred CCCeEEEEEEEEEeCCc--------eEEEEEEEecceeecCCEEEECCCCcE-------------EEEEEEEECCcCcCE
Confidence 57999999999999764 789999999999999999999999877 999999999999999
Q ss_pred EecCceEEEecccCCCccccccccceeeccCCC
Q psy1177 132 AVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGA 164 (283)
Q Consensus 132 A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~ 164 (283)
|.|||+|+|+| .+++..++.+|+||+++++
T Consensus 61 a~aG~~v~i~l---~~i~~~~v~~G~vl~~~~~ 90 (91)
T cd03693 61 ALPGDNVGFNV---KNVSKKDIKRGDVAGDSKN 90 (91)
T ss_pred ECCCCEEEEEE---CCCCHHHcCCcCEEccCCC
Confidence 99999999998 4677789999999999864
No 33
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.84 E-value=1.5e-20 Score=143.52 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=76.5
Q ss_pred CceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEe
Q psy1177 54 SPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAV 133 (283)
Q Consensus 54 ~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~ 133 (283)
|||||||++|+++ - |+|++|+|++|.+++||+|.++|++.. ++|++||+|++++++|.
T Consensus 1 p~r~~V~~v~~~~-~--------g~vv~G~v~~G~i~~Gd~v~i~P~~~~-------------~~V~si~~~~~~~~~a~ 58 (83)
T cd03698 1 PFRLPISDKYKDQ-G--------GTVVSGKVESGSIQKGDTLLVMPSKES-------------VEVKSIYVDDEEVDYAV 58 (83)
T ss_pred CeEEEEEeEEEcC-C--------CcEEEEEEeeeEEeCCCEEEEeCCCcE-------------EEEEEEEECCeECCEEC
Confidence 7999999999885 3 789999999999999999999999887 99999999999999999
Q ss_pred cCceEEEecccCCCccccccccceeecc
Q psy1177 134 PGGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 134 aG~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
|||+|+++| .+++..++.||++|+.
T Consensus 59 aGd~v~~~l---~~~~~~~v~~G~vl~~ 83 (83)
T cd03698 59 AGENVRLKL---KGIDEEDISPGDVLCS 83 (83)
T ss_pred CCCEEEEEE---CCCCHHHCCCCCEEeC
Confidence 999999998 4577779999999874
No 34
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.83 E-value=3.1e-20 Score=143.25 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=75.9
Q ss_pred ceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCc----eeecCCCccccccceEEEEEEEeCCceec
Q psy1177 55 PRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGL----VSKDSEGKLTCKPIFSRIVSLFAEQNELQ 130 (283)
Q Consensus 55 ~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~----~~~~~~~~~~~~p~~~kV~sIq~~~~~v~ 130 (283)
|+||||++|+++|. |||++|+|++|.+++||++.++|+. .. ++|++||+|+++++
T Consensus 1 ~~~~I~~vf~v~g~--------GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~-------------~~V~sI~~~~~~~~ 59 (87)
T cd03694 1 AEFQIDEIYSVPGV--------GTVVGGTVSKGVIRLGDTLLLGPDQDGSFRP-------------VTVKSIHRNRSPVR 59 (87)
T ss_pred CEEEEEeEEEcCCc--------ceEEEEEEecCEEeCCCEEEECCCCCCCEeE-------------EEEEEEEECCeECC
Confidence 78999999999764 7999999999999999999999983 34 99999999999999
Q ss_pred EEecCceEEEecccCCCccccccccceeecc
Q psy1177 131 FAVPGGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 131 ~A~aG~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
+|.|||+++++| .+++.+++.||+||++
T Consensus 60 ~a~aGd~v~l~l---~~i~~~~i~~G~vl~~ 87 (87)
T cd03694 60 VVRAGQSASLAL---KKIDRSLLRKGMVLVS 87 (87)
T ss_pred EECCCCEEEEEE---cCCCHHHcCCccEEeC
Confidence 999999999998 4677789999999974
No 35
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.82 E-value=3.1e-20 Score=143.07 Aligned_cols=85 Identities=27% Similarity=0.306 Sum_probs=76.8
Q ss_pred ceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecC--ceeecCCCccccccceEEEEEEEeCCceecEE
Q psy1177 55 PRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPG--LVSKDSEGKLTCKPIFSRIVSLFAEQNELQFA 132 (283)
Q Consensus 55 ~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~--~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A 132 (283)
|||||+++|.+++. |||++|+|++|.+++||+|.++|+ ... ++|++||+|++++++|
T Consensus 1 ~r~~V~~v~~~~g~--------G~vv~G~v~~G~v~~gd~v~~~p~~~~~~-------------~~V~si~~~~~~~~~a 59 (87)
T cd03697 1 FLMPIEDVFSIPGR--------GTVVTGRIERGTIKVGDEVEIVGFGETLK-------------TTVTGIEMFRKTLDEA 59 (87)
T ss_pred CEeeEEEEEeCCCc--------EEEEEEEECCCCCccCCEEEEeCCCCCce-------------EEEEEEEECCcCCCEE
Confidence 79999999999664 799999999999999999999996 334 8999999999999999
Q ss_pred ecCceEEEecccCCCccccccccceeeccCC
Q psy1177 133 VPGGLIGVGTKIEPTLCRADRLVGQVLGAVG 163 (283)
Q Consensus 133 ~aG~rvai~l~ld~~i~r~di~rG~vl~~~g 163 (283)
.|||+|+++| .++++.++.||+||+.++
T Consensus 60 ~~G~~v~l~l---~~~~~~~v~rG~vl~~~~ 87 (87)
T cd03697 60 EAGDNVGVLL---RGVKREDVERGMVLAKPG 87 (87)
T ss_pred CCCCEEEEEE---CCCCHHHcCCccEEecCC
Confidence 9999999998 456678999999999875
No 36
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.82 E-value=7.4e-20 Score=139.50 Aligned_cols=82 Identities=26% Similarity=0.386 Sum_probs=75.5
Q ss_pred CceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEe
Q psy1177 54 SPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAV 133 (283)
Q Consensus 54 ~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~ 133 (283)
||||||+++|..+ |+|++|+|++|.+++||++.++|++.. ++|++||++++++++|.
T Consensus 1 plr~~I~~v~~~~----------g~vv~G~v~~G~i~~G~~v~i~P~~~~-------------~~V~si~~~~~~~~~a~ 57 (82)
T cd04089 1 PLRLPIIDKYKDM----------GTVVLGKVESGTIKKGDKLLVMPNKTQ-------------VEVLSIYNEDVEVRYAR 57 (82)
T ss_pred CeEEEEEeEEEcC----------CEEEEEEEeeeEEecCCEEEEeCCCcE-------------EEEEEEEECCEECCEEC
Confidence 7999999999752 689999999999999999999999887 99999999999999999
Q ss_pred cCceEEEecccCCCccccccccceeecc
Q psy1177 134 PGGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 134 aG~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
|||+|+++| .++++.++.|||+|+.
T Consensus 58 aGd~v~l~l---~~i~~~~v~~G~vl~~ 82 (82)
T cd04089 58 PGENVRLRL---KGIEEEDISPGFVLCS 82 (82)
T ss_pred CCCEEEEEe---cCCCHHHCCCCCEEeC
Confidence 999999998 4677789999999874
No 37
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.78 E-value=1.5e-18 Score=132.33 Aligned_cols=83 Identities=28% Similarity=0.381 Sum_probs=75.4
Q ss_pred ceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEec
Q psy1177 55 PRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVP 134 (283)
Q Consensus 55 ~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~a 134 (283)
|||||+++|.+++. |+|++|+|++|.+++||++.++|++.. ++|++||++++++++|.|
T Consensus 1 lr~~i~~~~~~~~~--------g~vv~G~v~sG~i~~g~~v~~~p~~~~-------------~~V~sI~~~~~~~~~a~a 59 (83)
T cd03696 1 FRLPIDRVFTVKGQ--------GTVVTGTVLSGSVKVGDKVEILPLGEE-------------TRVRSIQVHGKDVEEAKA 59 (83)
T ss_pred CEEEEEEEEEcCCc--------EEEEEEEEeecEEeCCCEEEECCCCce-------------EEEEEEEECCcCcCEEcC
Confidence 79999999998664 789999999999999999999999876 999999999999999999
Q ss_pred CceEEEecccCCCccccccccceeecc
Q psy1177 135 GGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 135 G~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
||+|++.+ .+++..++.+|++|+.
T Consensus 60 Gd~v~i~l---~~~~~~~i~~G~vl~~ 83 (83)
T cd03696 60 GDRVALNL---TGVDAKDLERGDVLSS 83 (83)
T ss_pred CCEEEEEE---cCCCHHHcCCccEEcC
Confidence 99999988 3555679999999873
No 38
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.75 E-value=1.2e-17 Score=127.28 Aligned_cols=81 Identities=27% Similarity=0.245 Sum_probs=72.4
Q ss_pred ceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEec
Q psy1177 55 PRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVP 134 (283)
Q Consensus 55 ~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~a 134 (283)
|||||.++|..++- |++++|+|++|.+++||+|.++|++.. ++|++||+|++++++|.|
T Consensus 1 lr~~V~dv~k~~~~--------~~~v~Gkv~~G~v~~Gd~v~~~P~~~~-------------~~V~si~~~~~~~~~a~a 59 (81)
T cd03695 1 FRFPVQYVIRPNAD--------FRGYAGTIASGSIRVGDEVVVLPSGKT-------------SRVKSIETFDGELDEAGA 59 (81)
T ss_pred CEeeEEEEEeeCCC--------cEEEEEEEccceEECCCEEEEcCCCCe-------------EEEEEEEECCcEeCEEcC
Confidence 79999999987542 456899999999999999999999887 999999999999999999
Q ss_pred CceEEEecccCCCccccccccceeecc
Q psy1177 135 GGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 135 G~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
||+|+|+|. + ..++.||+||+.
T Consensus 60 Gd~v~l~l~-~----~~~i~~G~vl~~ 81 (81)
T cd03695 60 GESVTLTLE-D----EIDVSRGDVIVA 81 (81)
T ss_pred CCEEEEEEC-C----ccccCCCCEEeC
Confidence 999999985 2 458999999974
No 39
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.71 E-value=1.1e-16 Score=125.72 Aligned_cols=88 Identities=20% Similarity=0.300 Sum_probs=77.8
Q ss_pred ceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC--------CeEE
Q psy1177 156 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA--------DLAK 227 (283)
Q Consensus 156 G~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~--------~~~~ 227 (283)
|+|++.|+++++. +.++++++++.+. .+||++|+++++|+||+++.|+|.+++. .+|+
T Consensus 1 G~vl~~~~~~~~~-~~~~~~i~~l~~~-------------~~~l~~~~~v~~~~Gt~~v~~ri~ll~~~~~~pg~~~~a~ 66 (97)
T cd04094 1 GDVLADPGSLLPT-RRLDVRLTVLLSA-------------PRPLKHRQRVHLHHGTSEVLARVVLLDRDELAPGEEALAQ 66 (97)
T ss_pred CCEEecCCCcCCc-eEEEEEEEEECCC-------------CccCCCCCeEEEEeccceEEEEEEeCCccccCCCCEEEEE
Confidence 7899999999885 7999999998753 5789999999999999999999998754 2899
Q ss_pred EEeCCeEecccCCEEEEEeecCCCcEEEE-EEE
Q psy1177 228 ISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 228 l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v 259 (283)
|+|++|+++.+||||+|| . .++|+|+| |+|
T Consensus 67 l~l~~pl~~~~gdrfilR-~-~~~~~tiggG~V 97 (97)
T cd04094 67 LRLEEPLVALRGDRFILR-S-YSPLRTLGGGRV 97 (97)
T ss_pred EEECCcEeecCCCeEEEe-e-CCCCeEEEeEEC
Confidence 999999999999999995 3 47789999 764
No 40
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=99.70 E-value=2.1e-16 Score=121.99 Aligned_cols=87 Identities=48% Similarity=0.891 Sum_probs=73.4
Q ss_pred eeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCEEEEEeec
Q psy1177 169 FIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRV 248 (283)
Q Consensus 169 ~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr~ii~R~~ 248 (283)
|.+++++|++|++..|..+ ++.+.+||+.++.+++++||+++.|+|...++|.+.+.|.+|+|++.|+|++|||+.
T Consensus 1 ~~~l~i~~~Ll~r~vg~~~----~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k~d~~~v~L~~Pvc~~~g~rvaiSRri 76 (88)
T PF09173_consen 1 YTELEIEYHLLERVVGVKE----KEAKVEPIKKGEVLMLNIGSATTGGVVTSVKKDMAEVELKKPVCAEKGERVAISRRI 76 (88)
T ss_dssp EEEEEEEEEE-SSCSSSSS-----CCS-----TTEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEE-STTSEEEEEEEE
T ss_pred CEEEEEEEEEehhhhCccc----cceecccCCCCCEEEEEEccccccEEEEEEECCEEEEEecCCeEcCcCCeeeeehhc
Confidence 3589999999999998764 234578999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEE-EEE
Q psy1177 249 EKHWSWIE-GTV 259 (283)
Q Consensus 249 ~~~~~tiG-G~v 259 (283)
+..||+|| |.|
T Consensus 77 ~~rWRLIG~G~I 88 (88)
T PF09173_consen 77 GNRWRLIGWGII 88 (88)
T ss_dssp TTSEEEEEEEEE
T ss_pred cCeEEEEEEEeC
Confidence 99999999 986
No 41
>KOG0463|consensus
Probab=99.69 E-value=5.1e-16 Score=146.80 Aligned_cols=205 Identities=15% Similarity=0.207 Sum_probs=169.4
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCC-CCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEE
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIR-DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEV 97 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r-~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i 97 (283)
-+||+-||-.+|+|++-|...|. .++.... ..+.|.-|.||+.|+|.|. |||+.||+++|.|+.+|.+.+
T Consensus 332 ~CPIFQvSNVtG~NL~LLkmFLN-lls~R~~~~E~~PAeFQIDD~Y~VpGV--------GTvvSGT~L~GtIrLND~LlL 402 (641)
T KOG0463|consen 332 VCPIFQVSNVTGTNLPLLKMFLN-LLSLRRQLNENDPAEFQIDDIYWVPGV--------GTVVSGTLLSGTIRLNDILLL 402 (641)
T ss_pred ccceEEeccccCCChHHHHHHHh-hcCcccccccCCCcceeecceEecCCc--------ceEeecceeeeeEEeccEEEe
Confidence 36999999999999997777776 4543221 3446888999999999776 799999999999999999999
Q ss_pred ecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeeccCCCCCceeeEEEEEEE
Q psy1177 98 RPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYH 177 (283)
Q Consensus 98 ~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~ 177 (283)
-|.-. +.+-| ..|+||+--.-+|..+.+||.....| ..++|.++..|||+..|..-|..+-+|++++.
T Consensus 403 GPd~~-------G~F~p--I~iKSIHRKRMpV~~VrcGQtASFAL---KKIkr~~vRKGMVmVsp~lkPqAsweFEaEIL 470 (641)
T KOG0463|consen 403 GPDSN-------GDFMP--IPIKSIHRKRMPVGIVRCGQTASFAL---KKIKRKDVRKGMVMVSPKLKPQASWEFEAEIL 470 (641)
T ss_pred cCCCC-------CCeee--eehhhhhhccccceEEeccchhhhHh---hhcchhhhhcceEEecCCCCcceeeEEeeeEE
Confidence 88432 12333 67899988888999999999998877 47899999999999999988888779999999
Q ss_pred EeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC--------CeEEEEe-CCeEecccCCEEEEEeec
Q psy1177 178 LLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA--------DLAKISL-TNPVCTEVNEKIALSRRV 248 (283)
Q Consensus 178 ~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~--------~~~~l~L-~~Pv~~~~gdr~ii~R~~ 248 (283)
.|.. ...+.+++.-++|+|+...+|+|..+.+ +.++++| .+|=.+.+|+|.+.| .
T Consensus 471 VLHH--------------PTTIsprYQAMvHcGSiRQTAtivsM~kdcLRTGDka~V~FrFIkqPEYir~gqrlVFR-E- 534 (641)
T KOG0463|consen 471 VLHH--------------PTTISPRYQAMVHCGSIRQTATIVSMGKDCLRTGDKAKVQFRFIKQPEYIRPGQRLVFR-E- 534 (641)
T ss_pred EEec--------------CCccCcchhheeeeccccceeeeeecChhhhhcCCcceEEEEEecCcceecCCceEEee-c-
Confidence 9874 6789999999999999999999998864 3788876 479999999999984 3
Q ss_pred CCCcEEEE-EEEecCc
Q psy1177 249 EKHWSWIE-GTVSAKV 263 (283)
Q Consensus 249 ~~~~~tiG-G~v~~~~ 263 (283)
.||-+ |.|....
T Consensus 535 ---GRTKAVGti~~~l 547 (641)
T KOG0463|consen 535 ---GRTKAVGTISSVL 547 (641)
T ss_pred ---ccceeeeeecccc
Confidence 27778 8886554
No 42
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.59 E-value=3.8e-14 Score=143.44 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=111.9
Q ss_pred hHHHHHHHHHhcCCCC----CCcEEEeecCCCC----------CHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCC
Q psy1177 3 VKYVTQKWRLERTVAE----GAPVIPISAQLKY----------NIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKP 68 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~~----~~piIpvSA~~g~----------nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~ 68 (283)
++.+++++++..++.. ++|++++||++|. |++.|++.|.+++|.|..+.++||+|+|.++|...+
T Consensus 135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~- 213 (594)
T TIGR01394 135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEY- 213 (594)
T ss_pred HHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCC-
Confidence 3456777777654442 4799999999996 799999999999999988888999999999987643
Q ss_pred CCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEeccc
Q psy1177 69 GCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKI 144 (283)
Q Consensus 69 G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~l 144 (283)
.|+++.|+|.+|+|++||+|.+.|.... ....+|++|+.+ ..++++|.|||.|+|.
T Consensus 214 -------~Grv~~gRV~sG~lk~G~~V~~~~~~~~----------~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--- 273 (594)
T TIGR01394 214 -------LGRIAIGRVHRGTVKKGQQVALMKRDGT----------IENGRISKLLGFEGLERVEIDEAGAGDIVAVA--- 273 (594)
T ss_pred -------CceEEEEEEEeCEEccCCEEEEecCCCc----------eeEEEEEEEEEccCCCceECCEECCCCEEEEe---
Confidence 5899999999999999999999986321 011799999976 5789999999999983
Q ss_pred CCCccccccccceeeccCCC
Q psy1177 145 EPTLCRADRLVGQVLGAVGA 164 (283)
Q Consensus 145 d~~i~r~di~rG~vl~~~g~ 164 (283)
++ +++.+|++|+.++.
T Consensus 274 --gl--~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 274 --GL--EDINIGETIADPEV 289 (594)
T ss_pred --CC--cccCCCCEEeCCCc
Confidence 33 36889999998764
No 43
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.57 E-value=6.3e-14 Score=141.95 Aligned_cols=124 Identities=21% Similarity=0.203 Sum_probs=104.8
Q ss_pred CCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEE
Q psy1177 16 VAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95 (283)
Q Consensus 16 ~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v 95 (283)
++...+++++||++|.||++|+++|.+.+|.|.++.++||+++|..+|... ++|+|+.|+|.+|+|++||+|
T Consensus 151 g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~--------~~G~v~~~rV~sG~lk~Gd~v 222 (595)
T TIGR01393 151 GLDASEAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDN--------YRGVVALVRVFEGTIKPGDKI 222 (595)
T ss_pred CCCcceEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeC--------CCcEEEEEEEECCEEecCCEE
Confidence 344446999999999999999999998899998888999999999988653 368999999999999999999
Q ss_pred EEecCceeecCCCccccccceEEEEEEEeCC---ceecEEecCceEEEecccCCCccc-cccccceeeccCCC
Q psy1177 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQ---NELQFAVPGGLIGVGTKIEPTLCR-ADRLVGQVLGAVGA 164 (283)
Q Consensus 96 ~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~---~~v~~A~aG~rvai~l~ld~~i~r-~di~rG~vl~~~g~ 164 (283)
.++|++.. .+|.+|.+++ .++++|.||| |++.+ .++++ .++..||+|+.++.
T Consensus 223 ~~~~~~~~-------------~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~---~~~~~~~~~~~Gdtl~~~~~ 278 (595)
T TIGR01393 223 RFMSTGKE-------------YEVDEVGVFTPKLTKTDELSAGE-VGYII---AGIKDVSDVRVGDTITHVKN 278 (595)
T ss_pred EEecCCCe-------------eEEeEEEEecCCceECCEEcCCC-EEEEe---ccccccCccCCCCEEECCCC
Confidence 99999877 8999999887 6789999999 76654 23322 57889999987654
No 44
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.51 E-value=3.8e-13 Score=136.38 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=102.8
Q ss_pred CCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEE
Q psy1177 16 VAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95 (283)
Q Consensus 16 ~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v 95 (283)
++...+++++||++|.||++|+++|.+.+|.|.++.++||+++|.+++.. .++|+|+.|+|.+|+|++||+|
T Consensus 155 g~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d--------~~~G~v~~~rV~sG~Lk~Gd~i 226 (600)
T PRK05433 155 GIDASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYD--------NYRGVVVLVRVVDGTLKKGDKI 226 (600)
T ss_pred CCCcceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCceEEEEEEEec--------CCCceEEEEEEEcCEEecCCEE
Confidence 34444699999999999999999999889999888889999999887654 3468999999999999999999
Q ss_pred EEecCceeecCCCccccccceEEEEEEEeC---CceecEEecCceEEEecccCCCcc-ccccccceeeccCCC
Q psy1177 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAE---QNELQFAVPGGLIGVGTKIEPTLC-RADRLVGQVLGAVGA 164 (283)
Q Consensus 96 ~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~---~~~v~~A~aG~rvai~l~ld~~i~-r~di~rG~vl~~~g~ 164 (283)
.++|++.. .+|.+|.++ ..++++|.||| |+..+ .+++ ..++..||+|+.++.
T Consensus 227 ~~~~~~~~-------------~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~---~~ik~~~~~~~Gdtl~~~~~ 282 (600)
T PRK05433 227 KMMSTGKE-------------YEVDEVGVFTPKMVPVDELSAGE-VGYII---AGIKDVRDARVGDTITLAKN 282 (600)
T ss_pred EEecCCce-------------EEEEEeeccCCCceECcEEcCCC-EEEEe---cccccccccCCCCEEECCCC
Confidence 99998877 899999876 47899999999 66544 1232 257889999987654
No 45
>PRK10218 GTP-binding protein; Provisional
Probab=99.48 E-value=9.1e-13 Score=133.62 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=106.7
Q ss_pred hHHHHHHHHHhcCCC----CCCcEEEeecCCCC----------CHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCC
Q psy1177 3 VKYVTQKWRLERTVA----EGAPVIPISAQLKY----------NIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKP 68 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~----~~~piIpvSA~~g~----------nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~ 68 (283)
+..+++++++..... .++|++++||++|. |+..|+++|.+++|.|.++.++||+|+|.++|..
T Consensus 139 ~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d--- 215 (607)
T PRK10218 139 WVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYN--- 215 (607)
T ss_pred HHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEec---
Confidence 345677777754333 25899999999998 5899999999999999888889999999988754
Q ss_pred CCcccCCcceEEEEEEEeeEeeCCCEEEEecC-ceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecc
Q psy1177 69 GCEVDDLKGGVAGGSILRGVLKVGMEIEVRPG-LVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTK 143 (283)
Q Consensus 69 G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~-~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ 143 (283)
.+.|+++.|+|.+|+|++||+|.+.+. +.. ...+|.+|..+ ..++++|.|||-+++.
T Consensus 216 -----~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~-----------~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~-- 277 (607)
T PRK10218 216 -----SYVGVIGIGRIKRGKVKPNQQVTIIDSEGKT-----------RNAKVGKVLGHLGLERIETDLAEAGDIVAIT-- 277 (607)
T ss_pred -----CCCcEEEEEEEEeCcCcCCCEEEEecCCCcE-----------eeEEEEEEEEEecCCceECCEEcCCCEEEEE--
Confidence 335899999999999999999999876 321 01678888655 6689999999999982
Q ss_pred cCCCccccccccceeeccCC
Q psy1177 144 IEPTLCRADRLVGQVLGAVG 163 (283)
Q Consensus 144 ld~~i~r~di~rG~vl~~~g 163 (283)
++ +++..||.|+.++
T Consensus 278 ---gl--~~~~~GdTl~~~~ 292 (607)
T PRK10218 278 ---GL--GELNISDTVCDTQ 292 (607)
T ss_pred ---Cc--cccccCcEEecCC
Confidence 23 3577899887655
No 46
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.38 E-value=5.6e-12 Score=97.98 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=68.7
Q ss_pred eeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC---------CeEEEEeCCeEecccC
Q psy1177 169 FIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA---------DLAKISLTNPVCTEVN 239 (283)
Q Consensus 169 ~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~---------~~~~l~L~~Pv~~~~g 239 (283)
++.|+|+++||+...|++ ..||++|+++++|+||+++.|+|..+++ ..|+|+|++|+|+++|
T Consensus 3 ~~~f~a~i~~L~~~~~g~---------~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~g~~~~v~i~l~~p~~~~~g 73 (93)
T cd03706 3 HDKVEAQVYILSKAEGGR---------HKPFVSNFQPQMFSLTWDCAARIDLPPGKEMVMPGEDTKVTLILRRPMVLEKG 73 (93)
T ss_pred ceEEEEEEEEEcccccCC---------CccccCCCeeEEEeccceEEEEEECCCCCcEeCCCCEEEEEEEECCcEEEeeC
Confidence 368999999999766554 5899999999999999999999998752 2899999999999999
Q ss_pred CEEEEEeecCCCcEEEE-EEEec
Q psy1177 240 EKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 240 dr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
+||+|| .. + +|+| |+|++
T Consensus 74 ~rf~lR-~~-~--~tvg~G~V~~ 92 (93)
T cd03706 74 QRFTLR-DG-N--RTIGTGLVTD 92 (93)
T ss_pred CEEEEE-EC-C--EEEEEEEEEe
Confidence 999994 43 2 8999 99854
No 47
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.36 E-value=6.5e-12 Score=96.89 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=66.7
Q ss_pred eeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC---------CeEEEEeCCeEecccC
Q psy1177 169 FIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA---------DLAKISLTNPVCTEVN 239 (283)
Q Consensus 169 ~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~---------~~~~l~L~~Pv~~~~g 239 (283)
++.|+|+++||+...|++ +.||++|+++++|+||+++.|++..+.+ ..|+|+|++|+|+++|
T Consensus 3 ~~~~~a~i~~l~~~~~g~---------~~~i~~g~~~~l~~gt~~~~~~i~~l~~~~~i~~g~~~~v~l~l~~pv~~~~~ 73 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGR---------HTPFFSGYRPQFYIRTTDVTGSITLPEGTEMVMPGDNVKMTVELIHPIALEKG 73 (90)
T ss_pred eeEEEEEEEEEcccccCC---------CCcccCCceeEEEeccCeEEEEEEccCcccccCCCCEEEEEEEECCcEEEecC
Confidence 468999999999765544 5899999999999999999999998752 2899999999999999
Q ss_pred CEEEEEeecCCCcEEEE-EEE
Q psy1177 240 EKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 240 dr~ii~R~~~~~~~tiG-G~v 259 (283)
+||+|| .. .+|+| |+|
T Consensus 74 ~rf~lR-~~---~~tig~G~V 90 (90)
T cd03707 74 LRFAIR-EG---GRTVGAGVI 90 (90)
T ss_pred CEEEEe-cC---CcEEEEEEC
Confidence 999994 33 37999 864
No 48
>KOG1143|consensus
Probab=99.35 E-value=2.9e-11 Score=114.80 Aligned_cols=204 Identities=17% Similarity=0.197 Sum_probs=160.3
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCCCC----CCC--CCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCC
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIPIP----IRD--FTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGM 93 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~~p----~r~--~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD 93 (283)
+||+.+|+.+|+|++-|...|. .+++- +++ ...+..|.||-.|.|.-. |+||+|++.+|.+..|+
T Consensus 363 vPif~vSsVsGegl~ll~~fLn-~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~V--------G~VVGG~Ls~G~l~Eg~ 433 (591)
T KOG1143|consen 363 VPIFAVSSVSGEGLRLLRTFLN-CLSPAGTAEERIQLVQLPAEFQVDEIYNVPHV--------GQVVGGMLSEGQLHEGA 433 (591)
T ss_pred eeEEEEeecCccchhHHHHHHh-hcCCcCChHHHHHHhcCcceeeHhHeecCCcc--------cccccceeeeceeccCc
Confidence 5999999999999987766665 34321 111 235677999999999544 78999999999999999
Q ss_pred EEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeeccCCCCCceeeEEE
Q psy1177 94 EIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELE 173 (283)
Q Consensus 94 ~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~l~~~~~~~~ 173 (283)
.+.+-|... | +-.+.+|-+|+-..+++.-..|||...+.+++ ++ +--+.+||||+.++.-|++...|+
T Consensus 434 ~~~vGP~~D-----G----~F~~itV~sI~Rnr~acrvvraGqaAslsl~d-~D--~~~LR~GMVl~~~~~nP~~c~~F~ 501 (591)
T KOG1143|consen 434 DVLVGPMKD-----G----TFEKITVGSIRRNRQACRVVRAGQAASLSLND-PD--GVSLRRGMVLAEIDHNPPVCYEFT 501 (591)
T ss_pred eeEeecCCC-----C----ceeEEEeeeeeccccceeeecCccceeeeccC-CC--ccchhcceEEeecCCCCceEEEEe
Confidence 999988532 1 22338999999999999999999999998863 33 346889999999887788877999
Q ss_pred EEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC-------CeEEEE---eCCeEecccCCEEE
Q psy1177 174 ISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA-------DLAKIS---LTNPVCTEVNEKIA 243 (283)
Q Consensus 174 a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~-------~~~~l~---L~~Pv~~~~gdr~i 243 (283)
|++.+|=. ...+..|....+|+|+...+|.|.-+.+ +++.++ +.+|=.+++|.+++
T Consensus 502 A~~~lLfH--------------aT~i~~GFQ~TVhiGsvrqTAvi~~I~~~d~lrtg~~AvV~f~F~~hPEyir~G~~il 567 (591)
T KOG1143|consen 502 ANLLLLFH--------------ATYICEGFQATVHIGSVRQTAVITHIDDADCLRTGKWAVVKFCFAYHPEYIREGSPIL 567 (591)
T ss_pred eeehhhhh--------------hHhheecceEEEEEcceeeeeeeeeecccccccCCceEEEEEEecCCchhccCCCeee
Confidence 99987753 4589999999999999999999988753 244433 45899999999999
Q ss_pred EEeecCCCcEEEE-EEEecCc
Q psy1177 244 LSRRVEKHWSWIE-GTVSAKV 263 (283)
Q Consensus 244 i~R~~~~~~~tiG-G~v~~~~ 263 (283)
.| .. .|=| |.|..-.
T Consensus 568 fR-eG----~tKGiG~Vt~Vf 583 (591)
T KOG1143|consen 568 FR-EG----KTKGIGEVTKVF 583 (591)
T ss_pred ee-cc----cccccceEEEEE
Confidence 94 32 5678 8885543
No 49
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.34 E-value=1.2e-11 Score=125.12 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhh----CC-CCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKK----IP-IPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVG 92 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~----i~-~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vG 92 (283)
.++|+||+||++|+||++|++.|... ++ .-..+.++|++++|+++|.++|. |+|+||+|.+|+|++|
T Consensus 189 ~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~--------G~v~t~~v~~G~l~~G 260 (590)
T TIGR00491 189 KTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEETGL--------GMTIDAVIYDGILRKG 260 (590)
T ss_pred CCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCC--------ceEEEEEEEcCEEeCC
Confidence 47899999999999999999988642 21 11235678999999999999875 7999999999999999
Q ss_pred CEEEEecCceeecCCCccccccceEEEEEEEeCC
Q psy1177 93 MEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQ 126 (283)
Q Consensus 93 D~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~ 126 (283)
|.|.+.|... |+.++||+|....
T Consensus 261 D~iv~~~~~~-----------~i~~kVr~l~~~~ 283 (590)
T TIGR00491 261 DTIAMAGSDD-----------VIVTRVRALLKPR 283 (590)
T ss_pred CEEEEccCCC-----------cccEEEEEecCCC
Confidence 9999998742 4448999997653
No 50
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.34 E-value=1.4e-11 Score=124.76 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=85.7
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhh--CCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEE
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKK--IPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~--i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v 95 (283)
.+.+++|+||++|+||++|+++|... +.....+.+.||+++|+++|..+| +|+|++|+|.+|+|++||.|
T Consensus 223 ~~~~~v~iSAktGeGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g--------~G~v~~~~V~~GtL~~Gd~i 294 (587)
T TIGR00487 223 GDTIFVPVSALTGDGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKG--------RGPVATVLVQSGTLRVGDIV 294 (587)
T ss_pred CCceEEEEECCCCCChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCC--------CcEEEEEEEEeCEEeCCCEE
Confidence 35799999999999999999998642 222334566899999999998866 47999999999999999999
Q ss_pred EEecCceeecCCCccccccceEEEEEEEe-CCceecEEecCceEEE
Q psy1177 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFA-EQNELQFAVPGGLIGV 140 (283)
Q Consensus 96 ~i~P~~~~~~~~~~~~~~p~~~kV~sIq~-~~~~v~~A~aG~rvai 140 (283)
.+.|. . .+|++|+. +++.+++|.||+-|.|
T Consensus 295 v~~~~--~-------------~kVr~l~~~~g~~v~~a~~g~~v~i 325 (587)
T TIGR00487 295 VVGAA--Y-------------GRVRAMIDENGKSVKEAGPSKPVEI 325 (587)
T ss_pred EECCC--c-------------cEEEEEECCCCCCCCEECCCCEEEE
Confidence 99875 2 79999998 7889999999999987
No 51
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.28 E-value=4.3e-11 Score=127.20 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=83.0
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCC-----CCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIP-----IPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVG 92 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~-----~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vG 92 (283)
.++|+||+||++|+||++|+++|....+ ....+.+++++++|+++|.++|. |||++|+|.+|+|++|
T Consensus 646 ~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~--------G~vvt~iv~~G~Lk~G 717 (1049)
T PRK14845 646 RTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGL--------GTTIDAIIYDGTLRRG 717 (1049)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCc--------eeEEEEEEEcCEEecC
Confidence 4789999999999999999999874222 13344678999999999999875 7999999999999999
Q ss_pred CEEEEecCceeecCCCccccccceEEEEEEEeC------------CceecEEecCceEEE
Q psy1177 93 MEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE------------QNELQFAVPGGLIGV 140 (283)
Q Consensus 93 D~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~------------~~~v~~A~aG~rvai 140 (283)
|.|.+.|... |+.++||+|... .+.+++|.|..-|-|
T Consensus 718 D~iv~g~~~~-----------~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki 766 (1049)
T PRK14845 718 DTIVVGGPDD-----------VIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKI 766 (1049)
T ss_pred CEEEEccCCC-----------cceEEEEEecCcccccccccccccccccccccCCCceEE
Confidence 9999988642 455999999742 235677777665655
No 52
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.22 E-value=1.2e-10 Score=89.15 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=66.6
Q ss_pred EEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCc
Q psy1177 57 LIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGG 136 (283)
Q Consensus 57 ~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~ 136 (283)
.-|..+|.+++. |+|++|+|.+|.+++|+.+.++|++.. ....+|+||+.|++++++|.+|+
T Consensus 3 ~~V~~vf~~~~~--------g~vag~kV~~G~l~~g~~v~vlr~~~~----------~~~g~i~sl~~~~~~v~~a~~G~ 64 (84)
T cd03692 3 AEVRAVFKISKV--------GNIAGCYVTDGKIKRNAKVRVLRNGEV----------IYEGKISSLKRFKDDVKEVKKGY 64 (84)
T ss_pred EEEEEEEECCCC--------cEEEEEEEEECEEeCCCEEEEEcCCCE----------EEEEEEEEEEEcCcccCEECCCC
Confidence 357788988643 689999999999999999999999832 01189999999999999999999
Q ss_pred eEEEecccCCCccccccccceee
Q psy1177 137 LIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 137 rvai~l~ld~~i~r~di~rG~vl 159 (283)
.|+|.+. ++. |+.+||++
T Consensus 65 ecgi~l~---~~~--d~~~Gdvi 82 (84)
T cd03692 65 ECGITLE---NFN--DIKVGDII 82 (84)
T ss_pred EEEEEEe---Ccc--cCCCCCEE
Confidence 9999883 443 78888876
No 53
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.20 E-value=1.9e-10 Score=116.54 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=80.9
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhh----CCC-CCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKK----IPI-PIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVG 92 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~----i~~-p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vG 92 (283)
.++|++|+||++|+|+++|++.|... ++. -.++.+.|++++|+++|..+| +|+|++|+|.+|+|++|
T Consensus 191 ~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g--------~G~v~~~~v~~GtL~~G 262 (586)
T PRK04004 191 KTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKEERG--------LGTTIDVILYDGTLRKG 262 (586)
T ss_pred CCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCC--------CceEEEEEEEcCEEECC
Confidence 57899999999999999999887532 222 234567899999999999866 47999999999999999
Q ss_pred CEEEEecCceeecCCCccccccceEEEEEEEeCC------------ceecEEecCceEEE
Q psy1177 93 MEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQ------------NELQFAVPGGLIGV 140 (283)
Q Consensus 93 D~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~------------~~v~~A~aG~rvai 140 (283)
|.|.+.|... |+.++||+|+.+. +.+++|.|..-|-|
T Consensus 263 d~vv~~~~~~-----------~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i 311 (586)
T PRK04004 263 DTIVVGGKDG-----------PIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKI 311 (586)
T ss_pred CEEEECcCCC-----------cceEEEEEEecCcchhhccccccccccccccCCCCceEE
Confidence 9999998752 2338999999863 45666655544433
No 54
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.14 E-value=6.3e-10 Score=115.79 Aligned_cols=100 Identities=21% Similarity=0.190 Sum_probs=84.6
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCC--CCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEE
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIP--IPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~--~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v 95 (283)
.++|++|+||++|.||++|++.|..... .+..+.+.+++..|+++|..+| +|+|++|+|.+|+|++||.|
T Consensus 425 ~~vp~vpvSAktG~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg--------~G~v~~v~V~sGtLk~Gd~v 496 (787)
T PRK05306 425 GDTIFVPVSAKTGEGIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKG--------RGPVATVLVQNGTLKVGDIV 496 (787)
T ss_pred CCceEEEEeCCCCCCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCC--------CeEEEEEEEecCeEecCCEE
Confidence 4689999999999999999999874221 2344567899999999987755 57999999999999999999
Q ss_pred EEecCceeecCCCccccccceEEEEEEEe-CCceecEEecCceEEE
Q psy1177 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFA-EQNELQFAVPGGLIGV 140 (283)
Q Consensus 96 ~i~P~~~~~~~~~~~~~~p~~~kV~sIq~-~~~~v~~A~aG~rvai 140 (283)
.+.| .. .+|++|+. +++++++|.||+-|+|
T Consensus 497 v~g~--~~-------------gkVr~m~~~~~~~v~~A~pGd~V~I 527 (787)
T PRK05306 497 VAGT--TY-------------GRVRAMVDDNGKRVKEAGPSTPVEI 527 (787)
T ss_pred EECC--cE-------------EEEEEEECCCCCCCCEEcCCCeEEE
Confidence 9864 23 89999998 5779999999999998
No 55
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.07 E-value=9.5e-10 Score=107.16 Aligned_cols=110 Identities=22% Similarity=0.186 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEE
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSI 84 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv 84 (283)
.+||.+.+ +++...+|.+||++|.||++|+++|.+.+|.|..+.++|++-.|.+| +|+.|+|.|+--+|
T Consensus 149 k~eIe~~i---Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS--------~yD~Y~GVv~~vRi 217 (603)
T COG0481 149 KQEIEDII---GIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIFDS--------WYDNYLGVVVLVRI 217 (603)
T ss_pred HHHHHHHh---CCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEEec--------cccccceEEEEEEE
Confidence 34444443 56667789999999999999999999999999999999999776554 46789999999999
Q ss_pred EeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC
Q psy1177 85 LRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE 125 (283)
Q Consensus 85 ~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~ 125 (283)
..|.+++||+|.++-.+.+++..+.+++.|..+++.++...
T Consensus 218 ~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aG 258 (603)
T COG0481 218 FDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAG 258 (603)
T ss_pred eeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCC
Confidence 99999999999999999998777777888866666555443
No 56
>KOG0462|consensus
Probab=99.03 E-value=1e-09 Score=108.26 Aligned_cols=98 Identities=24% Similarity=0.310 Sum_probs=82.4
Q ss_pred CCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEE
Q psy1177 16 VAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95 (283)
Q Consensus 16 ~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v 95 (283)
.+...++|-+||++|.|+++|++++.+.+|.|.-..++||||.|.++ +|+.|+|.+..++|..|.+++||.|
T Consensus 206 ~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds--------~yD~y~G~I~~vrv~~G~vrkGdkV 277 (650)
T KOG0462|consen 206 DIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDS--------EYDEYRGVIALVRVVDGVVRKGDKV 277 (650)
T ss_pred cCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhh--------hhhhhcceEEEEEEeeeeeecCCEE
Confidence 45677999999999999999999999999999988999999998654 5778999999999999999999999
Q ss_pred EEecCceeecCCCccccccceEEEEE
Q psy1177 96 EVRPGLVSKDSEGKLTCKPIFSRIVS 121 (283)
Q Consensus 96 ~i~P~~~~~~~~~~~~~~p~~~kV~s 121 (283)
..+-++..+..+..++++|-.+.+..
T Consensus 278 ~~~~t~~~yev~~vgvm~p~~~~~~~ 303 (650)
T KOG0462|consen 278 QSAATGKSYEVKVVGVMRPEMTPVVE 303 (650)
T ss_pred EEeecCcceEeEEeEEeccCceeeee
Confidence 99988887655555555555444443
No 57
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.01 E-value=2.3e-09 Score=79.21 Aligned_cols=73 Identities=32% Similarity=0.353 Sum_probs=59.1
Q ss_pred ceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccc-ccc
Q psy1177 77 GGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRAD-RLV 155 (283)
Q Consensus 77 GtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~d-i~r 155 (283)
|+|++|+|.+|+|++||+|.++|.... .++...+|++|+++++..+++.+|+.+++.+.+ ...++ +.+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~--------~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~---~~~~~~i~~ 69 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTG--------KKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAI---IGLNDAIRR 69 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTT--------EECEEEEEEEEEETTEEESEEETTEEEEEEEES---SSGCSCSST
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCc--------ceeeeeecccccccccCccEeCCceeeEEEEEE---cCCCCCcCc
Confidence 689999999999999999999883211 112448999999999999999999999998753 23345 899
Q ss_pred ceeec
Q psy1177 156 GQVLG 160 (283)
Q Consensus 156 G~vl~ 160 (283)
||+|+
T Consensus 70 Gdtl~ 74 (74)
T PF03144_consen 70 GDTLT 74 (74)
T ss_dssp TEEEE
T ss_pred CCEEC
Confidence 99985
No 58
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.00 E-value=3.5e-09 Score=82.72 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=61.8
Q ss_pred eEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec------------------C--CeEEEE
Q psy1177 170 IELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK------------------A--DLAKIS 229 (283)
Q Consensus 170 ~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~------------------~--~~~~l~ 229 (283)
+.|+|+++||.. +.||+.|+++++|+||+++.|+|..+. + ..|+|+
T Consensus 4 ~~f~a~i~~l~~--------------~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l~ 69 (102)
T cd01513 4 DKFVAEIYVLDH--------------PEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVE 69 (102)
T ss_pred cEEEEEEEEECC--------------CcccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEEE
Confidence 589999998873 579999999999999999999999875 1 288899
Q ss_pred eCCeEecc------cCCEEEEEeecCCCcEEEE-EEE
Q psy1177 230 LTNPVCTE------VNEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 230 L~~Pv~~~------~gdr~ii~R~~~~~~~tiG-G~v 259 (283)
|++|+|++ .++||+|| +.+ +|+| |.|
T Consensus 70 ~~~pi~~e~~~~~~~~grfilr-~~~---~tvg~G~V 102 (102)
T cd01513 70 LQKPVALETFSENQEGGRFALR-DGG---RTVGAGLI 102 (102)
T ss_pred ECCceEEEEhhhCCCcccEEEE-eCC---CEEEEEEC
Confidence 99999999 99999995 432 7999 875
No 59
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.99 E-value=6.8e-09 Score=75.61 Aligned_cols=80 Identities=33% Similarity=0.480 Sum_probs=67.5
Q ss_pred ceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEec--CceeecCCCccccccceEEEEEEEeCCceecEE
Q psy1177 55 PRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRP--GLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFA 132 (283)
Q Consensus 55 ~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P--~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A 132 (283)
++++|.++|...+ .|.+++|+|.+|.+++||.+.+.| .... .+|++|+.++.+++++
T Consensus 1 ~~~~v~~~~~~~~--------~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~-------------~~i~~i~~~~~~~~~~ 59 (83)
T cd01342 1 LRALVFKVFKDKG--------RGTVATGRVESGTLKKGDKVRVGPGGGGVK-------------GKVKSLKRFKGEVDEA 59 (83)
T ss_pred CeeEEEEEEEeCC--------ceEEEEEEEeeCEEecCCEEEEecCCceeE-------------EEEeEeEecCceecee
Confidence 5789999998753 378999999999999999999999 6555 8999999999999999
Q ss_pred ecCceEEEecccCCCccccccccceeec
Q psy1177 133 VPGGLIGVGTKIEPTLCRADRLVGQVLG 160 (283)
Q Consensus 133 ~aG~rvai~l~ld~~i~r~di~rG~vl~ 160 (283)
.||+.+++.+... .++..|++++
T Consensus 60 ~aG~~~~~~~~~~-----~~~~~g~~l~ 82 (83)
T cd01342 60 VAGDIVGIVLKDK-----DDIKIGDTLT 82 (83)
T ss_pred cCCCEEEEEEccc-----cccCCCCEec
Confidence 9999999976321 1677888875
No 60
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=98.90 E-value=1.8e-08 Score=79.32 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=64.3
Q ss_pred ceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEe-----cC------------CeEEEE
Q psy1177 167 KIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLAT-----KA------------DLAKIS 229 (283)
Q Consensus 167 ~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~-----~~------------~~~~l~ 229 (283)
..++.|+|++++|+. ..||..|+.+.+|++|+++.|++..+ ++ ..++|.
T Consensus 3 k~~~~f~A~v~vl~~--------------~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~~~~~~p~~l~~g~~a~v~l~ 68 (99)
T PF03143_consen 3 KAVNRFEAQVIVLDH--------------PKPISPGYQPVLHIHTADVPCRIVKIISKIDTGKKKPKFLKPGDRAVVELE 68 (99)
T ss_dssp EEEEEEEEEEEESSG--------------SS-BETTEEEEEEETTEEEEEEEEEEEEEESTTTEE-SEB-TTEEEEEEEE
T ss_pred cccCEEEEEEEEEcC--------------CccccCCCccceEEeeceeeEEEEeeeecccccccccccccccccccccee
Confidence 345799999999984 68999999999999999999999887 22 278899
Q ss_pred eCCeEecccCCEEEEEeecCCCcEEEE-EEEe
Q psy1177 230 LTNPVCTEVNEKIALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 230 L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~ 260 (283)
|++|+|++.++||+|| +. .+|+| |.|.
T Consensus 69 ~~~pi~ve~~~Rf~lR-~~---~~Tia~G~V~ 96 (99)
T PF03143_consen 69 FQKPICVEPFSRFILR-DG---GKTIAVGVVT 96 (99)
T ss_dssp EEEEEEETTTTEEEEE-ET---TEEEEEEEEE
T ss_pred eccceeeecCceEEEc-cC---CeEEEEEEEE
Confidence 9999999999999995 43 38999 9984
No 61
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.88 E-value=3.3e-08 Score=102.43 Aligned_cols=100 Identities=27% Similarity=0.330 Sum_probs=79.9
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCCC--CCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEE
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIPI--PIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~~--p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v 95 (283)
.++|++++||++|.||++|++.|....+. ...+.+.|+...|..+.-- .++|+|++|+|.+|+|++||.|
T Consensus 383 ~~vpvv~VSAktG~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD--------~~~G~V~~~~V~sGtLr~GD~v 454 (742)
T CHL00189 383 GDTPMIPISASQGTNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLD--------KTKGPVATILVQNGTLHIGDII 454 (742)
T ss_pred CCceEEEEECCCCCCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEc--------CCCceEEEEEEEcCEEecCCEE
Confidence 35899999999999999999999864332 2233456777777665422 2368999999999999999999
Q ss_pred EEecCceeecCCCccccccceEEEEEEE-eCCceecEEecCceEEE
Q psy1177 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLF-AEQNELQFAVPGGLIGV 140 (283)
Q Consensus 96 ~i~P~~~~~~~~~~~~~~p~~~kV~sIq-~~~~~v~~A~aG~rvai 140 (283)
.+.|. . .+|++|. .+++.+++|.||+-|+|
T Consensus 455 v~g~~--~-------------gkVr~m~~~~~~~v~~a~pgdiV~I 485 (742)
T CHL00189 455 VIGTS--Y-------------AKIRGMINSLGNKINLATPSSVVEI 485 (742)
T ss_pred EECCc--c-------------eEEEEEEcCCCcCccEEcCCCceEe
Confidence 98763 3 7999997 66789999999999988
No 62
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.86 E-value=2.5e-08 Score=76.11 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=61.7
Q ss_pred eeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec------C--CeEEEE-eCCeEecccC
Q psy1177 169 FIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK------A--DLAKIS-LTNPVCTEVN 239 (283)
Q Consensus 169 ~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~------~--~~~~l~-L~~Pv~~~~g 239 (283)
.+.|+|+++||+. +.||.+|+++.+|++|+.+.|+|..+. + ..++|+ +.+|+|++.+
T Consensus 3 ~~~f~A~i~il~~--------------~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~l~~g~~~~v~i~f~~~p~~~e~~ 68 (87)
T cd03708 3 CWEFEAEILVLHH--------------PTTISPGYQATVHIGSIRQTARIVSIDKDVLRTGDRALVRFRFLYHPEYLREG 68 (87)
T ss_pred eeEEEEEEEEEcC--------------CCcccCCCEeEEEEcCCEEEEEEEeccHhhccCCCeEEEEEEECCCCcEEccC
Confidence 4689999999973 579999999999999999999998764 2 377888 4799999999
Q ss_pred CEEEEEeecCCCcEEEE-EEEe
Q psy1177 240 EKIALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 240 dr~ii~R~~~~~~~tiG-G~v~ 260 (283)
.||+| |. . +|+| |+|.
T Consensus 69 grf~l-r~---g-~tva~G~I~ 85 (87)
T cd03708 69 QRLIF-RE---G-RTKGVGEVT 85 (87)
T ss_pred CeEEE-EC---C-CcEEEEEEE
Confidence 99999 43 2 7999 9984
No 63
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.86 E-value=5.9e-08 Score=94.66 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=107.6
Q ss_pred hHHHHHHHHHhcCCC----CCCcEEEeecCCCC----------CHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCC
Q psy1177 3 VKYVTQKWRLERTVA----EGAPVIPISAQLKY----------NIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKP 68 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~----~~~piIpvSA~~g~----------nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~ 68 (283)
++-+++-+++..++. =+.|++-.||+.|. ++..|.++|.+++|.|.-+.++||.|-|--
T Consensus 139 ~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~------- 211 (603)
T COG1217 139 EVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQ------- 211 (603)
T ss_pred HHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEe-------
Confidence 345556566654443 25899999999884 788999999999999999999999998852
Q ss_pred CCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEeccc
Q psy1177 69 GCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKI 144 (283)
Q Consensus 69 G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~l 144 (283)
-+|++|-|-+..|+|.+|++++||.|.+.-.... ....||..+-.| ..++++|.|||-|||
T Consensus 212 -Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~----------~~~gri~kllgf~GL~R~ei~eA~AGDIVai---- 276 (603)
T COG1217 212 -LDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGT----------TENGRITKLLGFLGLERIEIEEAEAGDIVAI---- 276 (603)
T ss_pred -eccccccceeEEEEEecCcccCCCeEEEEcCCCc----------EEeeEEEeeeeccceeeeecccccccCEEEE----
Confidence 2778889999999999999999999999853322 122677777666 447899999999999
Q ss_pred CCCccccccccceeeccCCCC
Q psy1177 145 EPTLCRADRLVGQVLGAVGAL 165 (283)
Q Consensus 145 d~~i~r~di~rG~vl~~~g~l 165 (283)
.++ +++..|+-+|.|+..
T Consensus 277 -aG~--~~~~igdTi~d~~~~ 294 (603)
T COG1217 277 -AGL--EDINIGDTICDPDNP 294 (603)
T ss_pred -cCc--ccccccccccCCCCc
Confidence 445 367779998886544
No 64
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.85 E-value=5e-08 Score=74.32 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=57.5
Q ss_pred CCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEE
Q psy1177 53 SSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFA 132 (283)
Q Consensus 53 ~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A 132 (283)
.|-++-|...|-.++. . ++.|+|+.|++++|..+ -+... .+|+|||..++++++|
T Consensus 3 ~p~ki~Ilp~~vFr~~--------~-~IvG~V~~G~ik~G~~l---~G~~i-------------G~I~sIe~~~k~v~~A 57 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQS--------D-AIVGEVLEGIIKPGYPL---DGRKI-------------GRIKSIEDNGKNVDEA 57 (81)
T ss_dssp -SEEEEEEEEEEECTC--------C-EEEEEEEEEEEETT-EE---CSSCE-------------EEEEEEEETTEEESEE
T ss_pred CceEEEECCcCEEecC--------C-eEEEEEeeeEEeCCCcc---CCEEE-------------EEEEEeEECCcCcccc
Confidence 4667888887777653 5 67779999999999999 34333 8999999999999999
Q ss_pred ecCceEEEecccCCCccccccccceee
Q psy1177 133 VPGGLIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 133 ~aG~rvai~l~ld~~i~r~di~rG~vl 159 (283)
.+||.|||.+. +.+ ++..||+|
T Consensus 58 ~~G~eVai~Ie---g~~--~i~eGDiL 79 (81)
T PF14578_consen 58 KKGDEVAISIE---GPT--QIKEGDIL 79 (81)
T ss_dssp ETT-EEEEEEE---T----TB-TT-EE
T ss_pred CCCCEEEEEEe---CCc--cCCCCCEE
Confidence 99999999774 233 67778876
No 65
>PRK12740 elongation factor G; Reviewed
Probab=98.79 E-value=5.5e-08 Score=99.93 Aligned_cols=120 Identities=22% Similarity=0.305 Sum_probs=89.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCC-----------------CCCCCceEEEEEEeecCCCCCcccCCcceEEE
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIR-----------------DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r-----------------~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvt 81 (283)
-+|++.+||++|.|++.|+++|.+++|.|.. +.++++.+.|..++.- .+.|.++.
T Consensus 236 ~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~--------~~~G~i~~ 307 (668)
T PRK12740 236 IVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDD--------PFVGKLSL 307 (668)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeec--------CCCCcEEE
Confidence 3588889999999999999999998987742 3356777888776643 23578999
Q ss_pred EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEe-CCceecEEecCceEEEecccCCCccccccccceeec
Q psy1177 82 GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFA-EQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLG 160 (283)
Q Consensus 82 Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~-~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~ 160 (283)
++|.+|+|++||.|.+.+.+... + ..++..++. +..++++|.||+-++|. ++ .++..|++|+
T Consensus 308 ~RV~sG~L~~g~~v~~~~~~~~~--------~--i~~l~~l~g~~~~~v~~~~aGdI~~i~-----gl--~~~~~Gdtl~ 370 (668)
T PRK12740 308 VRVYSGTLKKGDTLYNSGTGKKE--------R--VGRLYRMHGKQREEVDEAVAGDIVAVA-----KL--KDAATGDTLC 370 (668)
T ss_pred EEEeeeEEcCCCEEEeCCCCCcE--------E--ecceeeecCCCccccCccCCCCEEEEe-----cc--CccCCCCEEe
Confidence 99999999999999998765430 0 124444442 45789999999999983 23 1467788886
Q ss_pred cCC
Q psy1177 161 AVG 163 (283)
Q Consensus 161 ~~g 163 (283)
...
T Consensus 371 ~~~ 373 (668)
T PRK12740 371 DKG 373 (668)
T ss_pred CCC
Confidence 543
No 66
>PRK13351 elongation factor G; Reviewed
Probab=98.74 E-value=1.2e-07 Score=97.85 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=88.2
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCCCCCC------------------CCCCCceEEEEEEeecCCCCCcccCCcceEEE
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIPIPIR------------------DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r------------------~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvt 81 (283)
+|++.+||++|.|++.|+++|.+++|.|.. +.++|+.+.|..++.- .++|.+..
T Consensus 253 ~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d--------~~~G~i~~ 324 (687)
T PRK13351 253 VPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYD--------PYAGKLTY 324 (687)
T ss_pred EEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeec--------CCCceEEE
Confidence 588888999999999999999999988742 2356788888776543 23588999
Q ss_pred EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccccce
Q psy1177 82 GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQ 157 (283)
Q Consensus 82 Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~ 157 (283)
++|.+|+|+.||+|.+.+.+.. .+|..|... ..++++|.|||-++|. +++ +...|+
T Consensus 325 ~RV~sGtl~~g~~v~~~~~~~~-------------~~i~~i~~~~g~~~~~v~~~~aGdI~~i~-----gl~--~~~~gd 384 (687)
T PRK13351 325 LRVYSGTLRAGSQLYNGTGGKR-------------EKVGRLFRLQGNKREEVDRAKAGDIVAVA-----GLK--ELETGD 384 (687)
T ss_pred EEEeEEEEcCCCEEEeCCCCCc-------------eEeeeEEEEccCCeeECCccCCCCEEEEE-----Ccc--cCccCC
Confidence 9999999999999999876544 566666443 4678999999999882 221 344578
Q ss_pred eeccCC
Q psy1177 158 VLGAVG 163 (283)
Q Consensus 158 vl~~~g 163 (283)
.|+..+
T Consensus 385 tl~~~~ 390 (687)
T PRK13351 385 TLHDSA 390 (687)
T ss_pred EEeCCC
Confidence 776543
No 67
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.74 E-value=1.4e-07 Score=98.06 Aligned_cols=118 Identities=24% Similarity=0.316 Sum_probs=90.4
Q ss_pred CCcEEEeecCCCCCHH----------------------------------HHHHHHHhhCCCCCC---------------
Q psy1177 19 GAPVIPISAQLKYNIE----------------------------------VLCEYITKKIPIPIR--------------- 49 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~----------------------------------~Ll~~L~~~i~~p~r--------------- 49 (283)
+..++..||+.+.++. .|++.|.+++|.|..
T Consensus 196 ~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~ 275 (731)
T PRK07560 196 DGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLN 275 (731)
T ss_pred CCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCC
Confidence 4567888999987764 789999988988742
Q ss_pred ----------CCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEE
Q psy1177 50 ----------DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRI 119 (283)
Q Consensus 50 ----------~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV 119 (283)
+.++||.+.|..++. +.++|.++.|+|.||+|++||+|.+.+.+.. .+|
T Consensus 276 ~~~~~~~~~~d~~~p~~a~VfK~~~--------d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~-------------~~v 334 (731)
T PRK07560 276 SEVGKAMLNCDPNGPLVMMVTDIIV--------DPHAGEVATGRVFSGTLRKGQEVYLVGAKKK-------------NRV 334 (731)
T ss_pred ccccceeeccCCCCCEEEEEEeeEE--------cCCCCeEEEEEEEEeEEcCCCEEEEcCCCCc-------------eEe
Confidence 223466676666543 2346899999999999999999999987765 789
Q ss_pred EEEEeC----CceecEEecCceEEEecccCCCccccccccceeeccCCC
Q psy1177 120 VSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGA 164 (283)
Q Consensus 120 ~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~ 164 (283)
..|..+ ..++++|.||+.++|. ++ .+...|++|+.++.
T Consensus 335 ~~i~~~~g~~~~~v~~a~AGdIv~i~-----gl--~~~~~GdtL~~~~~ 376 (731)
T PRK07560 335 QQVGIYMGPEREEVEEIPAGNIAAVT-----GL--KDARAGETVVSVED 376 (731)
T ss_pred heehhhhcCCCceeeeECCCCEEEEE-----cc--cccccCCEEeCCCc
Confidence 999766 4689999999999982 22 24667999986653
No 68
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=98.72 E-value=1.2e-07 Score=75.21 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=60.4
Q ss_pred eeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC----------------------CeE
Q psy1177 169 FIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA----------------------DLA 226 (283)
Q Consensus 169 ~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~----------------------~~~ 226 (283)
.+.|+|+++||+. +.||..|+.+.+|++|+++.|+|..+.. ..|
T Consensus 3 ~~~f~A~v~~l~~--------------~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v 68 (107)
T cd04093 3 STRFEARILTFNV--------------DKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIV 68 (107)
T ss_pred ccEEEEEEEEECC--------------CcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEE
Confidence 4689999999873 5799999999999999999999986420 167
Q ss_pred EEEeCCeEecccC------CEEEEEeecCCCcEEEE-EEEe
Q psy1177 227 KISLTNPVCTEVN------EKIALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 227 ~l~L~~Pv~~~~g------dr~ii~R~~~~~~~tiG-G~v~ 260 (283)
.|.|++|+|+++. -+|+| |.. ..|+| |.|.
T Consensus 69 ~l~~~~pi~~e~~~~~~~~Grfil-r~~---~~Tva~G~I~ 105 (107)
T cd04093 69 EIELERPIPLELFKDNKELGRVVL-RRD---GETIAAGLVT 105 (107)
T ss_pred EEEECCeEEEEEcccCCCcceEEE-EcC---CCEEEEEEEE
Confidence 7888999999985 38999 443 37999 9984
No 69
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=98.70 E-value=8.2e-08 Score=75.70 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=59.9
Q ss_pred eeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC----------------------CeE
Q psy1177 169 FIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA----------------------DLA 226 (283)
Q Consensus 169 ~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~----------------------~~~ 226 (283)
.+.|+|+++||+. ..||..|+.+.+++||+++.|+|..+.. ..+
T Consensus 3 ~~~f~A~v~~l~~--------------~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v 68 (104)
T cd03705 3 AESFTAQVIVLNH--------------PGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIV 68 (104)
T ss_pred ccEEEEEEEEECC--------------CCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEE
Confidence 3689999999983 4899999999999999999999996521 167
Q ss_pred EEEeCCeEecccC------CEEEEEeecCCCcEEEE-EEE
Q psy1177 227 KISLTNPVCTEVN------EKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 227 ~l~L~~Pv~~~~g------dr~ii~R~~~~~~~tiG-G~v 259 (283)
.|.|++|+|+++. .||+|+ +. ..|+| |.|
T Consensus 69 ~l~~~~pi~~e~~~~~~~lgrf~lr-d~---~~Tva~G~v 104 (104)
T cd03705 69 KIVPQKPLVVETFSEYPPLGRFAVR-DM---GQTVAVGIV 104 (104)
T ss_pred EEEECCeeEEEEcccCCCccCEEEE-eC---CCEEEEEEC
Confidence 7888999999984 589994 42 37999 875
No 70
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.56 E-value=6.1e-07 Score=93.23 Aligned_cols=103 Identities=21% Similarity=0.333 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhCCCCCC-------------------------CCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEee
Q psy1177 33 IEVLCEYITKKIPIPIR-------------------------DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRG 87 (283)
Q Consensus 33 I~~Ll~~L~~~i~~p~r-------------------------~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG 87 (283)
++.|++.|.+++|.|.. +.++|+...|..++.- .++|+++.|+|.||
T Consensus 243 ~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~--------~~~G~ia~~RV~sG 314 (720)
T TIGR00490 243 HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVD--------KHAGEVAVGRLYSG 314 (720)
T ss_pred HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEec--------CCCcEEEEEEEEeC
Confidence 57999999998887741 1245677777665532 23689999999999
Q ss_pred EeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccccceeeccCC
Q psy1177 88 VLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVG 163 (283)
Q Consensus 88 ~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g 163 (283)
+|++||.|.+.+.+.. .+|..|..+ ..++++|.||+.++|. ++ .+..+||+|+.++
T Consensus 315 tL~~G~~l~~~~~~~~-------------~kv~~l~~~~g~~~~~v~~a~aGdIv~i~-----gl--~~~~~GdtL~~~~ 374 (720)
T TIGR00490 315 TIRPGMEVYIVDRKAK-------------ARIQQVGVYMGPERVEVDEIPAGNIVAVI-----GL--KDAVAGETICTTV 374 (720)
T ss_pred EEcCCCEEEEcCCCCe-------------eEeeEEEEeccCCccCccEECCCCEEEEE-----Cc--cccccCceeecCC
Confidence 9999999999998876 899999776 3589999999999993 22 2566799987654
No 71
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=98.52 E-value=6.5e-07 Score=70.65 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=57.7
Q ss_pred eeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC--------------------CeEEE
Q psy1177 169 FIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA--------------------DLAKI 228 (283)
Q Consensus 169 ~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~--------------------~~~~l 228 (283)
.+.|.|++.||+ ..||..|+.|.++++|.++.|+|..+.. ..|.|
T Consensus 3 ~~~f~a~i~~l~---------------~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~~~~~l~~n~~a~v~i 67 (103)
T cd04095 3 SDQFAATLVWMD---------------EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVEL 67 (103)
T ss_pred cceeeEEEEEec---------------CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCccCCCEECCCCeEEEEE
Confidence 458999999997 4589999999999999999999987621 27888
Q ss_pred EeCCeEeccc-------CCEEEEEeecCCCcEEEE-EEE
Q psy1177 229 SLTNPVCTEV-------NEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 229 ~L~~Pv~~~~-------gdr~ii~R~~~~~~~tiG-G~v 259 (283)
.+++|+|++. | ||+|+ +..+ ..|+| |.|
T Consensus 68 ~~~~pi~~d~~~~~~~~G-rfili-D~~~-~~tva~G~i 103 (103)
T cd04095 68 SLSKPLAFDPYRENRATG-SFILI-DRLT-NATVGAGMI 103 (103)
T ss_pred EeCCccEecchhhCCCcc-eEEEE-ECCC-CcEEEEEeC
Confidence 9999999985 5 66663 2222 47999 875
No 72
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=98.49 E-value=1.1e-06 Score=69.91 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=60.2
Q ss_pred eeEEEEEEEEeeeeccccccCCCccccc-cCCCCCcEEEEEEecceeeEEEEEec------------C----------Ce
Q psy1177 169 FIELEISYHLLKRLLGVRMEGDKKGAKV-QKLTRNEVLLVNIGSLSTGGRVLATK------------A----------DL 225 (283)
Q Consensus 169 ~~~~~a~~~~l~~~~g~~~~~~~~~~~~-~pl~~~~~~~l~~gt~~v~~~v~~~~------------~----------~~ 225 (283)
.+.|+|+++||+. + .+|..|+.+.+|++|+++.|+|..+. . ..
T Consensus 3 ~~~F~A~i~vl~~--------------~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~ 68 (108)
T cd03704 3 VTEFEAQIAILEL--------------KRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVI 68 (108)
T ss_pred ccEEEEEEEEEeC--------------CCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEE
Confidence 3589999999983 4 67999999999999999999998541 0 16
Q ss_pred EEEEeCCeEecccC------CEEEEEeecCCCcEEEE-EEEe
Q psy1177 226 AKISLTNPVCTEVN------EKIALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 226 ~~l~L~~Pv~~~~g------dr~ii~R~~~~~~~tiG-G~v~ 260 (283)
+.|.+++|+|++.. -||+|| +. .+|+| |.|.
T Consensus 69 v~i~~~~pi~~e~~~~~~~lGRf~lR-~~---g~Tva~G~V~ 106 (108)
T cd03704 69 ARLETTGPICLEKFEDFPQLGRFTLR-DE---GKTIAIGKVL 106 (108)
T ss_pred EEEEeCCcEEEEEcccCCCcccEEEE-eC---CCEEEEEEEE
Confidence 77889999999976 599995 33 37999 9883
No 73
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.35 E-value=6.4e-06 Score=82.84 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=85.6
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCCCCCC-CC--------CCCceEEEEEEeecCCCCCccc-CCcceEEEEEEEee
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIPIPIR-DF--------TSSPRLIVIRSFDVNKPGCEVD-DLKGGVAGGSILRG 87 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r-~~--------~~~~r~~IdR~F~V~g~G~~~~-~~rGtVvtGtv~sG 87 (283)
+=+|++..||+++.||+.||+.|.+++|.|.. .. +.+|. --+|.+.- +.+ .++|-+.-.+|.||
T Consensus 248 ~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~---~~VFK~~~---~mdp~~~griaf~RV~sG 321 (527)
T TIGR00503 248 EMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFS---GFVFKIQA---NMDPKHRDRVAFMRVVSG 321 (527)
T ss_pred CeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCee---EEEEEEEe---ccCcccCceEEEEEEeee
Confidence 34588999999999999999999999987742 11 23333 34566521 111 24788899999999
Q ss_pred EeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccccceeeccC
Q psy1177 88 VLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAV 162 (283)
Q Consensus 88 ~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~ 162 (283)
+++.||+|...-.++. -++..++.+ ..++++|.|||-+|+. ++ ++...||.|+..
T Consensus 322 ~l~~g~~v~~~~~~k~-------------~ri~~~~~~~g~~~~~v~~a~aGDI~~~~-----~~--~~~~~GDtl~~~ 380 (527)
T TIGR00503 322 KYEKGMKLKHVRTGKD-------------VVISDALTFMAGDREHVEEAYAGDIIGLH-----NH--GTIQIGDTFTQG 380 (527)
T ss_pred EEcCCCEEEecCCCCc-------------EEecchhhhhcCCceEcceeCCCCEEEEE-----CC--CCcccCCEecCC
Confidence 9999999987655554 677777544 3578999999999982 22 356678887763
No 74
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.29 E-value=9e-06 Score=81.76 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=84.8
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCC-C--------CCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEe
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIR-D--------FTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVL 89 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r-~--------~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l 89 (283)
-+|++..||+++.||..||++|.+++|.|.. . .+.+| .--+|.+. .+- ...++|-+.-.+|.||++
T Consensus 248 ~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~---~~~VFK~~-~~m-~~~~~grlafvRV~sG~l 322 (526)
T PRK00741 248 LTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKF---SGFVFKIQ-ANM-DPKHRDRIAFVRVCSGKF 322 (526)
T ss_pred eEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCce---EEEEEEEE-ecC-CCCcCceEEEEEEeccEE
Confidence 4699999999999999999999999987742 1 11233 23345552 000 112468889999999999
Q ss_pred eCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccccceeeccCC
Q psy1177 90 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVG 163 (283)
Q Consensus 90 ~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g 163 (283)
+.||+|...-.++. -|+..+..+ ..++++|.|||-+|+. ++ ++...||.|+..+
T Consensus 323 ~~g~~v~~~~~~k~-------------~ri~~~~~~~g~~~~~v~~a~aGDIv~v~-----~l--~~~~~GDTL~~~~ 380 (526)
T PRK00741 323 EKGMKVRHVRTGKD-------------VRISNALTFMAQDREHVEEAYAGDIIGLH-----NH--GTIQIGDTFTQGE 380 (526)
T ss_pred CCCCEEEeccCCce-------------EEecceEEEecCCceECceeCCCCEEEEE-----CC--CCCccCCCccCCC
Confidence 99999987665554 567665433 3578999999999982 22 3566788776544
No 75
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.28 E-value=1.1e-05 Score=83.46 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=82.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCC-------------------CCCCCceEEEEEEeecCCCCCcccCCcceE
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIR-------------------DFTSSPRLIVIRSFDVNKPGCEVDDLKGGV 79 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r-------------------~~~~~~r~~IdR~F~V~g~G~~~~~~rGtV 79 (283)
-.|++..||+++.|++.|+++|..++|.|.. +.+++|.+.|-.+. ++.+.|-+
T Consensus 253 ~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~--------~d~~~G~i 324 (689)
T TIGR00484 253 FFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVA--------TDPFVGQL 324 (689)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEee--------ecCCCCeE
Confidence 3578888999999999999999998987741 11345666554432 23446888
Q ss_pred EEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCcccccccc
Q psy1177 80 AGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLV 155 (283)
Q Consensus 80 vtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~r 155 (283)
.-++|.||+|+.||.|...-.+.. .+|..|... ..++++|.|||-++|. +++ +...
T Consensus 325 ~~~RV~sGtL~~g~~v~~~~~~~~-------------~~i~~l~~~~g~~~~~v~~~~aGdI~~i~-----gl~--~~~~ 384 (689)
T TIGR00484 325 TFVRVYSGVLKSGSYVKNSRKNKK-------------ERVGRLVKMHANNREEIKEVRAGDICAAI-----GLK--DTTT 384 (689)
T ss_pred EEEEEEEeEEcCCCEEEeCCCCce-------------EEecceEEeecCCcccccccCCCCEEEEc-----CCC--CCCC
Confidence 999999999999999985422222 355555433 3578999999999982 221 3456
Q ss_pred ceeeccCC
Q psy1177 156 GQVLGAVG 163 (283)
Q Consensus 156 G~vl~~~g 163 (283)
|+.|+.+.
T Consensus 385 gdtl~~~~ 392 (689)
T TIGR00484 385 GDTLCDPK 392 (689)
T ss_pred CCEEeCCC
Confidence 88887544
No 76
>PRK12739 elongation factor G; Reviewed
Probab=98.28 E-value=1e-05 Score=83.84 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=82.4
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCCCCCC-------------------CCCCCceEEEEEEeecCCCCCcccCCcceEE
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIPIPIR-------------------DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVA 80 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r-------------------~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVv 80 (283)
.|++..||.++.|++.|++.|.+++|.|.. +.++||.+.|-..+ ++.++|.+.
T Consensus 253 ~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~--------~d~~~G~i~ 324 (691)
T PRK12739 253 FPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIM--------TDPFVGRLT 324 (691)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEee--------eCCCCCeEE
Confidence 478888999999999999999998987642 22445655554432 233468889
Q ss_pred EEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccccc
Q psy1177 81 GGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVG 156 (283)
Q Consensus 81 tGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG 156 (283)
-++|.||+|+.||.|...-.+.. .+|..|... ..++++|.|||-++|. +++ +...|
T Consensus 325 ~~RV~sGtL~~g~~v~~~~~~~~-------------~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-----gl~--~~~~g 384 (691)
T PRK12739 325 FFRVYSGVLESGSYVLNTTKGKK-------------ERIGRLLQMHANKREEIKEVYAGDIAAAV-----GLK--DTTTG 384 (691)
T ss_pred EEEEeeeEEcCCCEEEeCCCCce-------------EEecceEEEecCCcccccccCCCCEEEEe-----CCC--cccCC
Confidence 99999999999998875433333 456555332 4578999999999983 221 34568
Q ss_pred eeeccCC
Q psy1177 157 QVLGAVG 163 (283)
Q Consensus 157 ~vl~~~g 163 (283)
+.|+...
T Consensus 385 dtl~~~~ 391 (691)
T PRK12739 385 DTLCDEK 391 (691)
T ss_pred CEEeCCC
Confidence 8886543
No 77
>PRK00007 elongation factor G; Reviewed
Probab=98.26 E-value=1.2e-05 Score=83.26 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=81.5
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCCCCCC--------------------CCCCCceEEEEEEeecCCCCCcccCCcceE
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIPIPIR--------------------DFTSSPRLIVIRSFDVNKPGCEVDDLKGGV 79 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r--------------------~~~~~~r~~IdR~F~V~g~G~~~~~~rGtV 79 (283)
.|++..||+++.|++.|++.|.+++|.|.. +.++|+.+.|- .+ .++.++|-+
T Consensus 255 ~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf---K~-----~~d~~~G~i 326 (693)
T PRK00007 255 VPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAF---KI-----MTDPFVGKL 326 (693)
T ss_pred EEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEE---Ee-----eecCCCCcE
Confidence 477777999999999999999999987742 12345555554 43 123345778
Q ss_pred EEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCcccccccc
Q psy1177 80 AGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLV 155 (283)
Q Consensus 80 vtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~r 155 (283)
..++|.||+|+.||.|...-.+.. .+|..|... ..++++|.||+-++|. +++ +...
T Consensus 327 a~~RV~sGtl~~g~~v~~~~~~~~-------------eki~~l~~~~g~~~~~v~~~~aGdI~~i~-----gl~--~~~~ 386 (693)
T PRK00007 327 TFFRVYSGVLESGSYVLNSTKGKK-------------ERIGRILQMHANKREEIKEVRAGDIAAAV-----GLK--DTTT 386 (693)
T ss_pred EEEEEeeeEEcCCCEEEeCCCCce-------------eEeceeEEeccCCcccccccCCCcEEEEe-----CCc--cCCc
Confidence 999999999999999975322222 466666443 4678999999999982 221 3456
Q ss_pred ceeeccCC
Q psy1177 156 GQVLGAVG 163 (283)
Q Consensus 156 G~vl~~~g 163 (283)
|+.|+.++
T Consensus 387 GdtL~~~~ 394 (693)
T PRK00007 387 GDTLCDEK 394 (693)
T ss_pred CCEeeCCC
Confidence 88886543
No 78
>KOG1145|consensus
Probab=98.08 E-value=7.2e-06 Score=81.64 Aligned_cols=100 Identities=28% Similarity=0.268 Sum_probs=81.5
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCCC--CCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEE
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIPI--PIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~~--p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v 95 (283)
-++++||+||++|+|++.|.+++....+. -+.+.++|+-=+|.-|+.-+| +|-+.|=-|.+|+|+.|+-+
T Consensus 289 GdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg--------~G~~aT~iVkrGTLkKG~vl 360 (683)
T KOG1145|consen 289 GDVQVIPISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKG--------RGPVATVIVKRGTLKKGSVL 360 (683)
T ss_pred CceeEEEeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCC--------ccceeEEEEeccccccccEE
Confidence 57999999999999999999998753221 123467889999999988766 57889999999999999988
Q ss_pred EEecCceeecCCCccccccceEEEEEEEeC-CceecEEecCceEEE
Q psy1177 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAE-QNELQFAVPGGLIGV 140 (283)
Q Consensus 96 ~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~-~~~v~~A~aG~rvai 140 (283)
.. |..- +|||+|.-+ ++++++|.|++-|.|
T Consensus 361 V~--G~~w-------------~KVr~l~D~nGk~i~~A~Ps~pv~V 391 (683)
T KOG1145|consen 361 VA--GKSW-------------CKVRALFDHNGKPIDEATPSQPVEV 391 (683)
T ss_pred EE--echh-------------hhhhhhhhcCCCCccccCCCCceEe
Confidence 76 3322 899999765 678999999999988
No 79
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=97.83 E-value=0.00015 Score=54.58 Aligned_cols=75 Identities=24% Similarity=0.246 Sum_probs=54.1
Q ss_pred EEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCc
Q psy1177 61 RSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGG 136 (283)
Q Consensus 61 R~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~ 136 (283)
.+|++ +++++.|.+..++|.+|.|++||.|.+.-.... .+|..|..+ ..++++|.|||
T Consensus 4 ~Vfk~-----~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~-------------~~v~~l~~~~g~~~~~v~~~~aGd 65 (83)
T cd04088 4 LVFKT-----IHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKK-------------ERVGRLLRMHGKKQEEVEEAGAGD 65 (83)
T ss_pred EEEEc-----ccCCCCceEEEEEEecCEEcCCCEEEECCCCcE-------------EEeeEEEEEcCCCceECCEeCCCC
Confidence 45655 455667889999999999999999988754433 566666332 45789999999
Q ss_pred eEEEecccCCCccccccccceeec
Q psy1177 137 LIGVGTKIEPTLCRADRLVGQVLG 160 (283)
Q Consensus 137 rvai~l~ld~~i~r~di~rG~vl~ 160 (283)
=++|. ++ ++...||.|+
T Consensus 66 I~~i~-----g~--~~~~~Gdtl~ 82 (83)
T cd04088 66 IGAVA-----GL--KDTATGDTLC 82 (83)
T ss_pred EEEEE-----CC--CCCccCCEee
Confidence 99982 22 2355677664
No 80
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=97.77 E-value=0.00017 Score=54.54 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=50.2
Q ss_pred ccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEe----CCceecEEecCceEEEecccCCC
Q psy1177 72 VDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFA----EQNELQFAVPGGLIGVGTKIEPT 147 (283)
Q Consensus 72 ~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~----~~~~v~~A~aG~rvai~l~ld~~ 147 (283)
++++.|-+..++|.+|+|++||.|.+.-.... .+|..|.. ...++++|.|||-++| .+
T Consensus 10 ~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~-------------~~v~~l~~~~g~~~~~v~~~~aGdI~~i-----~g 71 (83)
T cd04092 10 HDPQRGPLTFVRVYSGTLKRGSALYNTNTGKK-------------ERISRLLQPFADQYQEIPSLSAGNIGVI-----TG 71 (83)
T ss_pred cCCCCCeEEEEEEecCEECCCCEEEECCCCCE-------------EEeeEEEEEECCCceECCeeCCCCEEEE-----EC
Confidence 44567888899999999999999987644332 45656533 3468899999999998 22
Q ss_pred ccccccccceeec
Q psy1177 148 LCRADRLVGQVLG 160 (283)
Q Consensus 148 i~r~di~rG~vl~ 160 (283)
+ +++..||.|+
T Consensus 72 l--~~~~~Gdtl~ 82 (83)
T cd04092 72 L--KQTRTGDTLV 82 (83)
T ss_pred C--CCcccCCEEe
Confidence 3 2466787765
No 81
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00053 Score=71.11 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=83.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCC--------------------CCCCCceEEEEEEeecCCCCCcccCCcce
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIR--------------------DFTSSPRLIVIRSFDVNKPGCEVDDLKGG 78 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r--------------------~~~~~~r~~IdR~F~V~g~G~~~~~~rGt 78 (283)
-.|.+..||..+.|++.||+++.+++|-|.. +.++||-+.+-..-+ .| +.|-
T Consensus 252 ~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~--d~------~~g~ 323 (697)
T COG0480 252 IVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMT--DP------FVGK 323 (697)
T ss_pred eeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEe--cC------CCCe
Confidence 5699999999999999999999999987721 225667666654322 12 2354
Q ss_pred EEE-EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC-C---ceecEEecCceEEEecccCCCcccccc
Q psy1177 79 VAG-GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE-Q---NELQFAVPGGLIGVGTKIEPTLCRADR 153 (283)
Q Consensus 79 Vvt-Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~-~---~~v~~A~aG~rvai~l~ld~~i~r~di 153 (283)
++ ++|.||+++.||+|.....+.+ .+|-.|..+ + .+++++.||+-+|+. +++ +.
T Consensus 324 -l~~~RvysGtl~~G~~v~n~~~~~~-------------erv~~l~~~~~~~~~~v~~~~AG~I~a~~-----Gl~--~~ 382 (697)
T COG0480 324 -LTFVRVYSGTLKSGSEVLNSTKGKK-------------ERVGRLLLMHGNEREEVDEVPAGDIVALV-----GLK--DA 382 (697)
T ss_pred -EEEEEEeccEEcCCCEEEeCCCCcc-------------EEEEEEEEccCCceeecccccCccEEEEE-----ccc--cc
Confidence 45 9999999999997777655444 788888543 2 357889999999982 221 34
Q ss_pred ccceeeccCC
Q psy1177 154 LVGQVLGAVG 163 (283)
Q Consensus 154 ~rG~vl~~~g 163 (283)
..|+.|+.+.
T Consensus 383 ~tGdTl~~~~ 392 (697)
T COG0480 383 TTGDTLCDEN 392 (697)
T ss_pred ccCCeeecCC
Confidence 5678777655
No 82
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.0003 Score=69.95 Aligned_cols=103 Identities=20% Similarity=0.127 Sum_probs=71.8
Q ss_pred CCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCC--CCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCC
Q psy1177 15 TVAEGAPVIPISAQLKYNIEVLCEYITKKIPIP--IRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVG 92 (283)
Q Consensus 15 t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p--~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vG 92 (283)
-+..++.+||+||++|+||++|++.|.-..+.- ..+.+.+.+=.|.-+.--+| +|.++|=-|.+|++++|
T Consensus 140 ~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG--------~G~vatviv~~GtL~~G 211 (509)
T COG0532 140 EWGGDVIFVPVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKG--------LGPVATVIVQDGTLKKG 211 (509)
T ss_pred hcCCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccC--------CCceEEEEEecCeEecC
Confidence 344679999999999999999999987432221 22345677777776655444 57889999999999999
Q ss_pred CEEEEecCceeecCCCccccccceEEEEEE-EeCCceecEEecCceEEE
Q psy1177 93 MEIEVRPGLVSKDSEGKLTCKPIFSRIVSL-FAEQNELQFAVPGGLIGV 140 (283)
Q Consensus 93 D~v~i~P~~~~~~~~~~~~~~p~~~kV~sI-q~~~~~v~~A~aG~rvai 140 (283)
|.+.+-... .+|+.+ ...+++++.|.|+..+-+
T Consensus 212 D~iv~g~~~---------------g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 212 DIIVAGGEY---------------GRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred CEEEEccCC---------------CceEEeehhcCCCccccCCCCCeEE
Confidence 999985422 344443 234566666666655544
No 83
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=97.54 E-value=0.0005 Score=51.81 Aligned_cols=66 Identities=21% Similarity=0.158 Sum_probs=48.9
Q ss_pred CCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCcc
Q psy1177 74 DLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLC 149 (283)
Q Consensus 74 ~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~ 149 (283)
|++|-+..++|.+|.|++||+|.....+.. .+|..|..+ ..++++|.|||-+++ .++
T Consensus 11 ~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~-------------~~v~~i~~~~g~~~~~~~~~~aGdI~~i-----~g~- 71 (81)
T cd04091 11 GRFGQLTYMRIYQGKLKKGDTIYNVRTGKK-------------VRVPRLVRMHSNEMEEVEEAGAGDICAI-----FGI- 71 (81)
T ss_pred CCCCCEEEEEEecCEEcCCCEEEEcCCCCE-------------EEEeEEEEEeCCCceEccEECCCCEEEE-----ECC-
Confidence 356888999999999999999998765544 566666433 357899999998886 222
Q ss_pred ccccccceeec
Q psy1177 150 RADRLVGQVLG 160 (283)
Q Consensus 150 r~di~rG~vl~ 160 (283)
+...||.|+
T Consensus 72 --~~~~Gdtl~ 80 (81)
T cd04091 72 --DCASGDTFT 80 (81)
T ss_pred --CcccCCEec
Confidence 255677664
No 84
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=97.48 E-value=0.00097 Score=50.85 Aligned_cols=74 Identities=19% Similarity=0.108 Sum_probs=50.7
Q ss_pred cccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC---CceecEEecCceEEEecccCCC
Q psy1177 71 EVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE---QNELQFAVPGGLIGVGTKIEPT 147 (283)
Q Consensus 71 ~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~---~~~v~~A~aG~rvai~l~ld~~ 147 (283)
+++++.|-+..++|.+|+++.||.|.+.-.+.. .+|..|..+ ..++++|.|||=+++.-.+ .+
T Consensus 9 ~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~-------------~~i~~l~~~~~~~~~~~~~~aGdI~~v~~g~-~~ 74 (86)
T cd03699 9 WYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKE-------------YEVEEVGIFRPEMTPTDELSAGQVGYIIAGI-KT 74 (86)
T ss_pred eccCCCCEEEEEEEEcCEEcCCCEEEEecCCCe-------------EEEEEEEEECCCccCCceECCCCEEEEEccc-cc
Confidence 455667888999999999999999987644332 445555433 3578999999999883211 11
Q ss_pred ccccccccceeec
Q psy1177 148 LCRADRLVGQVLG 160 (283)
Q Consensus 148 i~r~di~rG~vl~ 160 (283)
+ .++..||.|+
T Consensus 75 l--~~~~~Gdtl~ 85 (86)
T cd03699 75 V--KDARVGDTIT 85 (86)
T ss_pred c--CccccccEee
Confidence 2 2566777765
No 85
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=97.45 E-value=0.0011 Score=50.26 Aligned_cols=73 Identities=27% Similarity=0.421 Sum_probs=48.8
Q ss_pred cccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCC
Q psy1177 71 EVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEP 146 (283)
Q Consensus 71 ~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~ 146 (283)
+++.+.|-+..++|.+|.|++||+|.+.-.+.. .-..+|.+|... ..++++|.|||=+++.
T Consensus 9 ~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~----------~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~----- 73 (86)
T cd03691 9 DYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGK----------IEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA----- 73 (86)
T ss_pred EecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCC----------EEEEEEeeEeeeeCCCeeECcEECCCCEEEEE-----
Confidence 344556888999999999999999987643210 000456666322 3578999999988773
Q ss_pred Cccccccccceeec
Q psy1177 147 TLCRADRLVGQVLG 160 (283)
Q Consensus 147 ~i~r~di~rG~vl~ 160 (283)
++ .+...||.|+
T Consensus 74 gl--~~~~~Gdtl~ 85 (86)
T cd03691 74 GI--EDITIGDTIC 85 (86)
T ss_pred CC--CCCcccceec
Confidence 22 2455677664
No 86
>KOG0052|consensus
Probab=97.40 E-value=0.00028 Score=67.98 Aligned_cols=144 Identities=16% Similarity=0.288 Sum_probs=114.7
Q ss_pred EEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeeccCC
Q psy1177 84 ILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVG 163 (283)
Q Consensus 84 v~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g 163 (283)
+.-|.++.++.+...|.... +++++.+||++...++.+|+.|+.+- .++++.++.+|+|+....
T Consensus 197 ~~t~iie~~~~v~~~~~~~~-------------~~vk~~~~~~~a~s~~~p~~~vG~~~---~~v~v~~i~~gnV~~dsK 260 (391)
T KOG0052|consen 197 VETGISEPGMDVTFAPSGVT-------------TEVKSVKVHHEAGSEDLPGDNVGFNV---KNVSVKDIDRGNVVGDSK 260 (391)
T ss_pred eeeeeccCccceeccccccc-------------cccccEEEEeccCccCCCcceeeeec---ccCccCcccccceecccc
Confidence 77889999999999998776 99999999999999999999999986 467778888999999887
Q ss_pred CCCce-eeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC-------------------
Q psy1177 164 ALPKI-FIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA------------------- 223 (283)
Q Consensus 164 ~l~~~-~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~------------------- 223 (283)
++|+. ...|.+++..|.+ ..-+..++...|.++|.+..|++..+..
T Consensus 261 ~~p~~~~~g~t~qviilnh--------------pgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~ 326 (391)
T KOG0052|consen 261 NDPPVEAAGFTAQVIILNH--------------PGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKS 326 (391)
T ss_pred cCCccccccceeeEEEecC--------------ccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccC
Confidence 77665 3467888888864 4568889999999999999999988742
Q ss_pred ---CeEEEEeCCeEecccC------CEEEEEeecCCCcEEEE-EEEec
Q psy1177 224 ---DLAKISLTNPVCTEVN------EKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 224 ---~~~~l~L~~Pv~~~~g------dr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
..+...+.+|||.+.- -||.+ |+.. .|++ |.|-+
T Consensus 327 ~daai~~~vp~kp~~ve~~~~~~~l~rfav-~d~~---~tvavgvika 370 (391)
T KOG0052|consen 327 GDAAIVEMVPGKPLCVESFSDYVPLGRFAV-RDMR---QTVAVGVIKA 370 (391)
T ss_pred CcceeeeeccCCccccccccccccccchhh-hhhh---ccccccceee
Confidence 1456789999999732 36676 3332 4667 66633
No 87
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=97.32 E-value=0.0017 Score=49.65 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=47.2
Q ss_pred CcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEE---eC-CceecEEecCceEEEecccCCCccc
Q psy1177 75 LKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLF---AE-QNELQFAVPGGLIGVGTKIEPTLCR 150 (283)
Q Consensus 75 ~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq---~~-~~~v~~A~aG~rvai~l~ld~~i~r 150 (283)
+.|-+..++|.+|+|+.||.|...-.+.. .+|..|. .. ..++++|.|||=+++. ++
T Consensus 14 ~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~-------------~kv~~l~~~~g~~~~~v~~a~aGdIv~v~-----gl-- 73 (85)
T cd03689 14 HRDRIAFVRVCSGKFERGMKVKHVRLGKE-------------VRLSNPQQFFAQDRETVDEAYPGDIIGLV-----NP-- 73 (85)
T ss_pred CCcEEEEEEEECCEEcCCCEEEEcCCCCE-------------EEeeEeEEEecCCeeEcCEECCCCEEEEE-----CC--
Confidence 35778899999999999999976543322 4555553 22 3578999999999982 22
Q ss_pred cccccceeec
Q psy1177 151 ADRLVGQVLG 160 (283)
Q Consensus 151 ~di~rG~vl~ 160 (283)
.+...||.|+
T Consensus 74 ~~~~~Gdtl~ 83 (85)
T cd03689 74 GNFQIGDTLT 83 (85)
T ss_pred CCccccCEee
Confidence 2466788876
No 88
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=97.32 E-value=0.0018 Score=49.39 Aligned_cols=79 Identities=23% Similarity=0.198 Sum_probs=52.8
Q ss_pred CCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----Cce
Q psy1177 53 SSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNE 128 (283)
Q Consensus 53 ~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~ 128 (283)
+||.+.|-. + +++++.|-+..++|.+|.|+.||.|...- ... .+|..|..+ ..+
T Consensus 2 ~p~~~~Vfk---v-----~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~-------------~~v~~l~~~~g~~~~~ 59 (85)
T cd03690 2 SELSGTVFK---I-----ERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEK-------------IKITELRVFNNGEVVT 59 (85)
T ss_pred CCcEEEEEE---e-----EECCCCCeEEEEEEccCEEcCCCEEEeCC-CcE-------------EEeceeEEEeCCCeEE
Confidence 466666543 3 23345688889999999999999997643 222 455566433 247
Q ss_pred ecEEecCceEEEecccCCCccccccccceeec
Q psy1177 129 LQFAVPGGLIGVGTKIEPTLCRADRLVGQVLG 160 (283)
Q Consensus 129 v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~ 160 (283)
+++|.|||=+|+. ++ ++...||.|+
T Consensus 60 v~~~~aGdI~ai~-----gl--~~~~~Gdtl~ 84 (85)
T cd03690 60 ADTVTAGDIAILT-----GL--KGLRVGDVLG 84 (85)
T ss_pred CcEECCCCEEEEE-----CC--CCCcCccccC
Confidence 8999999999982 22 2455676654
No 89
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00086 Score=65.67 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=77.4
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCCCCC-CCCCCCceEEEEE-----EeecCCCCCcccCCcceEEEEEEEeeEeeC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIPIPI-RDFTSSPRLIVIR-----SFDVNKPGCEVDDLKGGVAGGSILRGVLKV 91 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~-r~~~~~~r~~IdR-----~F~V~g~G~~~~~~rGtVvtGtv~sG~l~v 91 (283)
+-+|++-.||+.+-|++.||+.+.++.|.|. |+.+..-.-|-+. +|.|. .+-++ +-|-.+.==+|.||.+..
T Consensus 249 ~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQ-ANMDp-~HRDRIAFmRv~SGkfer 326 (528)
T COG4108 249 ELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQ-ANMDP-KHRDRIAFMRVCSGKFER 326 (528)
T ss_pred CccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEE-cCCCc-ccccceeEEEeccccccC
Confidence 5689999999999999999999999877764 3333222222333 22232 11111 013356677999999999
Q ss_pred CCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEe
Q psy1177 92 GMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVG 141 (283)
Q Consensus 92 GD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~ 141 (283)
|.++...-.++. .++..-+.| .+.+++|+|||-|||.
T Consensus 327 GMkv~h~rtGK~-------------~~ls~~~~f~A~dRe~ve~A~aGDIIGl~ 367 (528)
T COG4108 327 GMKVTHVRTGKD-------------VKLSDALTFMAQDRETVEEAYAGDIIGLH 367 (528)
T ss_pred CceeeeeecCCc-------------eEecchHhhhhhhhhhhhhccCCCeEecc
Confidence 999999877776 777766655 5578999999999994
No 90
>KOG0465|consensus
Probab=96.94 E-value=0.0034 Score=63.62 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=78.3
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCCCCCCC--------CCCCc--eE--------EEEEEeecCCCCCcccCCcceEEE
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIPIPIRD--------FTSSP--RL--------IVIRSFDVNKPGCEVDDLKGGVAG 81 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~--------~~~~~--r~--------~IdR~F~V~g~G~~~~~~rGtVvt 81 (283)
+|++..||+.+.|++.||+++.+++|-|..- .+.+- .| .|-=.|.+- . ..+ |----
T Consensus 283 vPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle-~----g~f-GqLTy 356 (721)
T KOG0465|consen 283 VPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLE-E----GRF-GQLTY 356 (721)
T ss_pred eeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEee-e----cCc-cceEE
Confidence 5999999999999999999999999866320 01110 11 122234442 0 111 32223
Q ss_pred EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEE-EeC---CceecEEecCceEEEecccCCCccccccccce
Q psy1177 82 GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSL-FAE---QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQ 157 (283)
Q Consensus 82 Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sI-q~~---~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~ 157 (283)
=++.||+|+.||.|.=.-.+++ .||-.+ .|| -++|+++.|||=+|+ -++ |...||
T Consensus 357 vRvYqG~L~kG~~iyN~rtgKK-------------vrv~RL~rmHa~~medV~~v~AG~I~al-----fGi---dcasGD 415 (721)
T KOG0465|consen 357 VRVYQGTLSKGDTIYNVRTGKK-------------VRVGRLVRMHANDMEDVNEVLAGDICAL-----FGI---DCASGD 415 (721)
T ss_pred EEEeeeeecCCcEEEecCCCce-------------eEhHHHhHhcccccchhhhhhccceeee-----ecc---ccccCc
Confidence 4899999999999887656555 666555 344 357899999999998 244 566678
Q ss_pred eeccCCCC
Q psy1177 158 VLGAVGAL 165 (283)
Q Consensus 158 vl~~~g~l 165 (283)
.+....++
T Consensus 416 Tftd~~~~ 423 (721)
T KOG0465|consen 416 TFTDKQNL 423 (721)
T ss_pred eeccCccc
Confidence 77776444
No 91
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.76 E-value=0.0068 Score=61.97 Aligned_cols=81 Identities=27% Similarity=0.324 Sum_probs=64.0
Q ss_pred eEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecC
Q psy1177 56 RLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPG 135 (283)
Q Consensus 56 r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG 135 (283)
..-|..+|.+++. |.|++-.|..|+++.|..+.++..+.. . ...+|.||+-+++++.++..|
T Consensus 494 ~a~v~~vf~~~~~--------~~iaG~~V~~G~i~~~~~~~v~r~~~~-------i---~~g~i~sl~~~k~~v~ev~~g 555 (587)
T TIGR00487 494 QAEVRQVFNVPKI--------GNIAGCYVTEGVIKRGNPLRVIRDGVV-------I---FEGEIDSLKRFKDDVKEVSNG 555 (587)
T ss_pred eEEEEEEEecCCC--------CEEEEEEEecCEEecCCeEEEEeCCEE-------E---EeccchHhhccCccccEECCC
Confidence 4566788988654 577777899999999999999876553 0 115899999999999999999
Q ss_pred ceEEEecccCCCccccccccceee
Q psy1177 136 GLIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 136 ~rvai~l~ld~~i~r~di~rG~vl 159 (283)
+-|||.+. +. .|+..||++
T Consensus 556 ~ecgi~~~---~~--~~~~~gD~i 574 (587)
T TIGR00487 556 YECGIGIK---NY--NDIKEGDII 574 (587)
T ss_pred CEEEEEEe---cc--ccCCCCCEE
Confidence 99999773 22 577788765
No 92
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.61 E-value=0.015 Score=61.27 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=65.6
Q ss_pred eEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecC
Q psy1177 56 RLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPG 135 (283)
Q Consensus 56 r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG 135 (283)
..-|-.+|.+++. |+|.+-.|..|.++.|..+.++-.+.. + ...+|.||+-|..+|.++..|
T Consensus 696 ~a~v~~vF~~~k~--------~~iaGc~V~~G~i~~~~~~rv~R~~~~-------i---~~g~i~slk~~k~~v~ev~~g 757 (787)
T PRK05306 696 QAEVREVFKVSKV--------GTIAGCMVTEGKIKRNAKVRVLRDGVV-------I---YEGELESLKRFKDDVKEVRAG 757 (787)
T ss_pred eEEEEEEEecCCC--------CeEEEEEEeeCEEecCCeEEEEeCCEE-------E---EEeEEehhcccCcCccEeCCC
Confidence 4677789998765 588888899999999999999865552 0 116899999999999999999
Q ss_pred ceEEEecccCCCccccccccceee
Q psy1177 136 GLIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 136 ~rvai~l~ld~~i~r~di~rG~vl 159 (283)
+-|||.+. +. .|+..||+|
T Consensus 758 ~ecgi~~~---~~--~d~~~gD~i 776 (787)
T PRK05306 758 YECGIGLE---NY--NDIKEGDII 776 (787)
T ss_pred CEEEEEee---cc--ccCCCCCEE
Confidence 99999873 23 478888875
No 93
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=96.30 E-value=0.031 Score=43.11 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=40.3
Q ss_pred CcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEE
Q psy1177 75 LKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGV 140 (283)
Q Consensus 75 ~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai 140 (283)
..|....++|.+|.|+.||.+.+...... .+.+. .....+|..|..+ ..++++|.|||-|+|
T Consensus 14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~--~~~~~--~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYS--PEDEE--DLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CCEEEEEEEEeeCeEeCCCEEEEECCCCC--CCccC--cEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 45788899999999999999987642100 00000 0011456666433 246799999999998
No 94
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.27 E-value=0.022 Score=59.67 Aligned_cols=82 Identities=20% Similarity=0.119 Sum_probs=65.0
Q ss_pred CceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEe
Q psy1177 54 SPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAV 133 (283)
Q Consensus 54 ~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~ 133 (283)
.-+.-|..+|.+.. |+|++-.|.+|.++.|..+.++-.+.. + ...+|.||+.+.+++.++.
T Consensus 649 ~g~a~v~~vF~~~k---------~~iaGc~V~~G~i~~~~~~rv~R~~~~-------i---~~G~i~slk~~k~~v~ev~ 709 (742)
T CHL00189 649 IGEAEVKTVFPLAK---------RFVAGCRVTEGKITKNALIKVIRENKL-------I---YEGKITSLKRVKEDVEEAQ 709 (742)
T ss_pred ceeEEeeEEEecCC---------CEEEEEEEecCEEecCCeEEEEeCCeE-------E---EEeEEhhHhhcCccccEeC
Confidence 34567889999854 577777899999999999999876543 0 1268999999999999999
Q ss_pred cCceEEEecccCCCccccccccceee
Q psy1177 134 PGGLIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 134 aG~rvai~l~ld~~i~r~di~rG~vl 159 (283)
.|+-|||.+. +. .|+..||++
T Consensus 710 ~g~ecgi~i~---~~--~d~~~gD~i 730 (742)
T CHL00189 710 EGNECGIFIE---EF--QLWQSGDKI 730 (742)
T ss_pred CCCEEEEEee---CC--CCCCcCCEE
Confidence 9999999763 22 477778765
No 95
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.11 E-value=0.041 Score=44.38 Aligned_cols=56 Identities=21% Similarity=0.193 Sum_probs=44.0
Q ss_pred CCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCc-----------eecEEe--cCceEEE
Q psy1177 74 DLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQN-----------ELQFAV--PGGLIGV 140 (283)
Q Consensus 74 ~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~-----------~v~~A~--aG~rvai 140 (283)
+++|++++=-|.+|+|++||.|.+... +-|+.+|||+|-..+. .+++|. +|-+|..
T Consensus 12 ~G~G~t~dvIl~~GtL~~GD~Iv~g~~-----------~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 12 EGLGTTIDVILYDGTLREGDTIVVCGL-----------NGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred CCCceEEEEEEECCeEecCCEEEEccC-----------CCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 346888899999999999999998632 3477899999988765 888988 5655543
No 96
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=95.86 E-value=0.031 Score=43.88 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=43.4
Q ss_pred CcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC-CceecEEecCceEEE
Q psy1177 75 LKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE-QNELQFAVPGGLIGV 140 (283)
Q Consensus 75 ~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~-~~~v~~A~aG~rvai 140 (283)
.+|.+.|--|.+|+|++||.+..-. .. .|||+|... ++.+++|.|++-|-|
T Consensus 13 g~G~vatviV~~GtL~~Gd~iv~G~--~~-------------gkVr~l~d~~g~~v~~a~Ps~~V~I 64 (95)
T cd03702 13 GRGPVATVLVQNGTLKVGDVLVAGT--TY-------------GKVRAMFDENGKRVKEAGPSTPVEI 64 (95)
T ss_pred CCCccEEEEEEcCeEeCCCEEEEcc--cc-------------cEEEEEECCCCCCCCEECCCCcEEE
Confidence 3688999999999999999998843 22 799999766 579999999998877
No 97
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.074 Score=53.30 Aligned_cols=78 Identities=26% Similarity=0.326 Sum_probs=60.0
Q ss_pred EEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEe-cCceeecCCCccccccceEEEEEEEeCCceecEEecCc
Q psy1177 58 IVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVR-PGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGG 136 (283)
Q Consensus 58 ~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~-P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~ 136 (283)
-+-..|.+.+. |.+++=.|..|.++.|..+.+. .+...+ ..+|.||+.|+.++.++.+|+
T Consensus 417 ~~r~v~~~~k~--------g~IaG~~V~~G~ikr~~~v~~~rd~~vi~-----------~G~i~sLk~~kddv~ev~~G~ 477 (509)
T COG0532 417 EVRAVFKLPKV--------GAIAGCMVTEGVIKRGAPVRVVRDGVVIY-----------EGEVESLKRFKDDVKEVRKGQ 477 (509)
T ss_pred EEEEEEEcCCC--------CeEEEEEEecCEEecCCcEEEEeCCeEEE-----------eeEEEeeeccCccHhHhccCc
Confidence 34446777654 6887888999999999999987 332221 369999999999999999999
Q ss_pred eEEEecccCCCccccccccceee
Q psy1177 137 LIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 137 rvai~l~ld~~i~r~di~rG~vl 159 (283)
-|||.++. .+|+..||+|
T Consensus 478 ecgI~i~~-----~~di~~gD~l 495 (509)
T COG0532 478 ECGIAIEN-----YRDIKEGDIL 495 (509)
T ss_pred EEEEEecC-----cccCCCCCEE
Confidence 99997742 4577777764
No 98
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=95.37 E-value=0.12 Score=53.09 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=57.0
Q ss_pred EEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEE
Q psy1177 61 RSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGV 140 (283)
Q Consensus 61 R~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai 140 (283)
.+|..+. +.|++-.|.+|.++.|-.| +++.+.. ..+|.||+.++++|++|.+|+-|||
T Consensus 473 ~vf~~~~---------~~i~G~~V~~G~i~~~~~v-~r~~~~~------------iG~i~slk~~k~~V~ev~~G~Ecgi 530 (590)
T TIGR00491 473 LVFRQSK---------PAIVGVEVLTGVIRQGYPL-MKDDGET------------VGTVRSMQDKGENVKSASAGQEVAI 530 (590)
T ss_pred eeeeCCC---------CeEEEEEEecCEEecCCeE-EecCCEE------------EEEEchhcccCccccEECCCCEEEE
Confidence 4676654 4677778999999999876 5544432 1799999999999999999999999
Q ss_pred ecccCCCccccccccceeecc
Q psy1177 141 GTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 141 ~l~ld~~i~r~di~rG~vl~~ 161 (283)
.+.. ..+- .++..||+|-.
T Consensus 531 ~i~~-~~~g-~~~~~gD~l~~ 549 (590)
T TIGR00491 531 AIKD-VVYG-RTIHEGDTLYV 549 (590)
T ss_pred EEeC-cccc-CCCCCCCEEEE
Confidence 7732 1111 36777887654
No 99
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=95.36 E-value=0.056 Score=42.24 Aligned_cols=52 Identities=25% Similarity=0.220 Sum_probs=42.9
Q ss_pred CCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC-CceecEEecCceEEE
Q psy1177 74 DLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE-QNELQFAVPGGLIGV 140 (283)
Q Consensus 74 ~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~-~~~v~~A~aG~rvai 140 (283)
+.+|++.|.-|.+|+|++||.+..- ... .+|+++.-. ++.+.+|.|++-|-+
T Consensus 12 ~g~G~vatviV~~GtL~~Gd~iv~G--~~~-------------GkVr~~~d~~g~~v~~a~Ps~~v~i 64 (95)
T cd03701 12 KGRGPVATVIVQNGTLKKGDVIVAG--GTY-------------GKIRTMVDENGKALLEAGPSTPVEI 64 (95)
T ss_pred CCCCeeEEEEEEcCeEecCCEEEEC--Ccc-------------ceEEEEECCCCCCccccCCCCCEEE
Confidence 3478999999999999999999884 333 789998654 678999999998855
No 100
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=95.31 E-value=0.17 Score=39.02 Aligned_cols=60 Identities=25% Similarity=0.211 Sum_probs=38.4
Q ss_pred ceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEE
Q psy1177 77 GGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGV 140 (283)
Q Consensus 77 GtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai 140 (283)
|-+..|+|.||.|+.||.|.+.-.......++. ....+|..|..+ ..++++|.|||=|++
T Consensus 16 ~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~----~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v 79 (94)
T cd04090 16 SFWAFGRIYSGTIKKGQKVKVLGENYSLDDEED----MTICTIGRLWILGGRYKIEVNEAPAGNWVLI 79 (94)
T ss_pred EEEEEEEEeeCeEcCCCEEEEECCCCCCccCCc----EEEEEEeEEEEecCCCEEEcceeCCCCEEEE
Confidence 346899999999999999987511100000000 111566666543 346899999999998
No 101
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=95.01 E-value=0.044 Score=46.07 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.+++.+++...++. .|++++||++|+||++|+++|.+.+.
T Consensus 108 ~~~~~~~~~~~~~~-~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 108 VAATRKLLLETGFE-EPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred HHHHHHHHHHcCCC-CCEEEEECCCccCHHHHHHHHHHhch
Confidence 45667777776653 79999999999999999999997553
No 102
>KOG1144|consensus
Probab=95.01 E-value=0.032 Score=58.05 Aligned_cols=131 Identities=17% Similarity=0.122 Sum_probs=78.1
Q ss_pred hhHHHHHH-HHHh-c----CCCCC------CcEEEeecCCCCCHHHHHHHHHhhCCC--CCC-CCCCCceEEEEEEeecC
Q psy1177 2 QVKYVTQK-WRLE-R----TVAEG------APVIPISAQLKYNIEVLCEYITKKIPI--PIR-DFTSSPRLIVIRSFDVN 66 (283)
Q Consensus 2 ~~~~~eIr-~~l~-~----t~~~~------~piIpvSA~~g~nI~~Ll~~L~~~i~~--p~r-~~~~~~r~~IdR~F~V~ 66 (283)
+.|++.|. +|.. + +.|+| +.+||.||.+|+||+.|+-.|.+.-+. -.+ ..-.-..-.|--+=.|-
T Consensus 632 ~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvie 711 (1064)
T KOG1144|consen 632 KERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIE 711 (1064)
T ss_pred HHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeec
Confidence 45677776 3443 2 33433 579999999999999999998863221 111 11223445565565676
Q ss_pred CCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCcee--ecCCCccccccce-EEEEEEEeCCce-------------ec
Q psy1177 67 KPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVS--KDSEGKLTCKPIF-SRIVSLFAEQNE-------------LQ 130 (283)
Q Consensus 67 g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~--~~~~~~~~~~p~~-~kV~sIq~~~~~-------------v~ 130 (283)
|. ||-+---|..|.++.||.|.+--..-. +....-+.-+|++ -||++=.+|++. ++
T Consensus 712 G~--------GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LE 783 (1064)
T KOG1144|consen 712 GH--------GTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLE 783 (1064)
T ss_pred CC--------CceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchH
Confidence 66 555677899999999999988532110 0000011122333 356555555544 56
Q ss_pred EEecCceEEE
Q psy1177 131 FAVPGGLIGV 140 (283)
Q Consensus 131 ~A~aG~rvai 140 (283)
.|.||-++-|
T Consensus 784 kaiaG~~l~V 793 (1064)
T KOG1144|consen 784 KAIAGTRLLV 793 (1064)
T ss_pred HHhcCCeeEE
Confidence 6778877766
No 103
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=94.24 E-value=0.23 Score=52.97 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=60.8
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCCCCCC-------------------------CCCCCceEEEEEEeecCCCCCcccC
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIPIPIR-------------------------DFTSSPRLIVIRSFDVNKPGCEVDD 74 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r-------------------------~~~~~~r~~IdR~F~V~g~G~~~~~ 74 (283)
.|++|.| +.|++.+.+++|.|.. +.++|+ +-.+|.+-- ..
T Consensus 323 ~pv~~~s-------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl---~a~VfK~~~-----~~ 387 (843)
T PLN00116 323 QTWLPAS-------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPL---MLYVSKMIP-----AS 387 (843)
T ss_pred HhhcCCh-------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCe---EEEEEeeee-----cC
Confidence 3566644 7999999998887731 012344 344555520 11
Q ss_pred Ccce-EEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEE-eC---CceecEEecCceEEE
Q psy1177 75 LKGG-VAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLF-AE---QNELQFAVPGGLIGV 140 (283)
Q Consensus 75 ~rGt-VvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq-~~---~~~v~~A~aG~rvai 140 (283)
..|. +.-++|.||+|+.||.|.+...+...+.... . ...+|..|. ++ ..++++|.||+-+||
T Consensus 388 ~~g~~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai 454 (843)
T PLN00116 388 DKGRFFAFGRVFSGTVATGMKVRIMGPNYVPGEKKD--L--YVKSVQRTVIWMGKKQESVEDVPCGNTVAM 454 (843)
T ss_pred CCCeEEEEEEEEeeeecCCCEEEEeCCCCCCCCccc--c--ceeEhheEEEecCCCceECcEECCCCEEEE
Confidence 2355 6889999999999999987643322110000 0 002443332 22 257899999999988
No 104
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=94.23 E-value=0.078 Score=48.53 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=23.3
Q ss_pred cEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 21 PVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 21 piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+++|+||++|.|+++|+++|.+.++
T Consensus 140 ~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 140 DIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred ceEEEecCCCCCHHHHHHHHHHhCC
Confidence 8999999999999999999998764
No 105
>PRK04004 translation initiation factor IF-2; Validated
Probab=94.06 E-value=0.35 Score=49.56 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=54.3
Q ss_pred EEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEE
Q psy1177 61 RSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGV 140 (283)
Q Consensus 61 R~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai 140 (283)
.+|..+. +.|++=.|.+|+++.|-.| +++.+.. ..+|.||+-++++|++|.+|+-|||
T Consensus 475 ~vf~~~~---------~~IaGc~V~~G~i~~~~~v-~r~~g~~------------iG~i~Slk~~k~~V~ev~~G~Ecgi 532 (586)
T PRK04004 475 YVFRQSD---------PAIVGVEVLGGTIKPGVPL-IKEDGKR------------VGTIKQIQDQGENVKEAKAGMEVAI 532 (586)
T ss_pred eeEecCC---------CeEEEEEEEeCEEecCCEE-EEECCEE------------EEEEehhhccCCcccEeCCCCEEEE
Confidence 4777654 4677778999999999874 4444432 2799999999999999999999999
Q ss_pred ecccCCCcc-ccccccceee
Q psy1177 141 GTKIEPTLC-RADRLVGQVL 159 (283)
Q Consensus 141 ~l~ld~~i~-r~di~rG~vl 159 (283)
.+. +.. =.|+..||+|
T Consensus 533 ~i~---~~~~g~~~~~gD~i 549 (586)
T PRK04004 533 SID---GPTVGRQIKEGDIL 549 (586)
T ss_pred EEe---cccccCCCCCCCEE
Confidence 763 211 0366667664
No 106
>PTZ00416 elongation factor 2; Provisional
Probab=93.95 E-value=0.46 Score=50.70 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhCCCCCC-C------------------------CCCCceEEEEEEeecCCCCCcccCCcce-EEEEEEEe
Q psy1177 33 IEVLCEYITKKIPIPIR-D------------------------FTSSPRLIVIRSFDVNKPGCEVDDLKGG-VAGGSILR 86 (283)
Q Consensus 33 I~~Ll~~L~~~i~~p~r-~------------------------~~~~~r~~IdR~F~V~g~G~~~~~~rGt-VvtGtv~s 86 (283)
++.|+++|.+++|.|.. . .++|+ +-.+|.+.- +...|. +.-.+|.|
T Consensus 325 ~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl---va~VfK~~~-----~~~~g~~~s~~RV~S 396 (836)
T PTZ00416 325 ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPL---MMYISKMVP-----TSDKGRFYAFGRVFS 396 (836)
T ss_pred HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCe---EEEEEeeee-----cCCCCcEEEEEEEEe
Confidence 68999999998987731 0 01233 444555521 122466 68899999
Q ss_pred eEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEE
Q psy1177 87 GVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGV 140 (283)
Q Consensus 87 G~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai 140 (283)
|+|+.||.|.+...+...+..++ -...+|..|... ..++++|.||+-++|
T Consensus 397 GtL~~g~~v~v~~~~~~~~~~e~----~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i 450 (836)
T PTZ00416 397 GTVATGQKVRIQGPNYVPGKKED----LFEKNIQRTVLMMGRYVEQIEDVPCGNTVGL 450 (836)
T ss_pred eeecCCCEEEEeCCCCCCCCccc----chheecceeEEecCCCceECcEECCCCEEEE
Confidence 99999999987644322110110 000124444322 357899999999998
No 107
>COG1159 Era GTPase [General function prediction only]
Probab=93.66 E-value=0.099 Score=49.04 Aligned_cols=46 Identities=22% Similarity=0.160 Sum_probs=33.3
Q ss_pred HHHHHHhc-CCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEE
Q psy1177 7 TQKWRLER-TVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVI 60 (283)
Q Consensus 7 eIr~~l~~-t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~Id 60 (283)
++.+++.. ..|. .++|+||++|.|++.|++.|.+++| .+|+++|-|
T Consensus 135 ~~~~~~~~~~~f~--~ivpiSA~~g~n~~~L~~~i~~~Lp------eg~~~yp~d 181 (298)
T COG1159 135 KLIAFLKKLLPFK--EIVPISALKGDNVDTLLEIIKEYLP------EGPWYYPED 181 (298)
T ss_pred HHHHHHHhhCCcc--eEEEeeccccCCHHHHHHHHHHhCC------CCCCcCChh
Confidence 33444443 3333 8999999999999999999998776 345555555
No 108
>PRK14845 translation initiation factor IF-2; Provisional
Probab=93.46 E-value=0.46 Score=51.84 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=56.3
Q ss_pred EEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEE
Q psy1177 61 RSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGV 140 (283)
Q Consensus 61 R~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai 140 (283)
-+|..+. +.|++-.|.+|++++|-.| +++.+.. ..+|.||+-++++|++|.+|+-|||
T Consensus 931 ~vF~~~~---------~~IaG~~V~~G~i~~~~~l-~r~~~~~------------iG~i~Slk~~k~~V~ev~~G~ecgI 988 (1049)
T PRK14845 931 CIFRRSN---------PAIVGVEVLEGTLRVGVTL-IKEDGMK------------VGTVRSIKDRGENVKEAKAGKAVAI 988 (1049)
T ss_pred eEEeCCC---------CeEEEEEEeeCEEecCcEE-EecCCEE------------EEEEchHhccCccccEeCCCCEEEE
Confidence 5777654 4787888999999999766 4433332 2799999999999999999999999
Q ss_pred ecccCCCccccccccceeecc
Q psy1177 141 GTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 141 ~l~ld~~i~r~di~rG~vl~~ 161 (283)
.+.. ..+-| ++..||+|-.
T Consensus 989 ~i~~-~~~gr-~~~~gD~l~~ 1007 (1049)
T PRK14845 989 AIEG-AILGR-HVDEGETLYV 1007 (1049)
T ss_pred EEec-ccccC-CCCCCCEEEE
Confidence 7732 12222 5666776543
No 109
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=91.64 E-value=1.2 Score=43.00 Aligned_cols=112 Identities=9% Similarity=0.048 Sum_probs=72.2
Q ss_pred eecEEecCceEEEeccc-CC-CccccccccceeeccCCCCCceeeEEE-EEEEEeeeeccccccCCCccccccCCC--CC
Q psy1177 128 ELQFAVPGGLIGVGTKI-EP-TLCRADRLVGQVLGAVGALPKIFIELE-ISYHLLKRLLGVRMEGDKKGAKVQKLT--RN 202 (283)
Q Consensus 128 ~v~~A~aG~rvai~l~l-d~-~i~r~di~rG~vl~~~g~l~~~~~~~~-a~~~~l~~~~g~~~~~~~~~~~~~pl~--~~ 202 (283)
-+..-.-|||-+|++.. +| -+...|.....|+..+..--... .+. ..+.|+.. .++. ..
T Consensus 227 G~~~yTiGQRkglgi~~~~p~yV~~~d~~~n~v~v~~~~~l~~~-~~~~~~~~w~~~---------------~~~~~~~~ 290 (362)
T PRK14664 227 GFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAE-YMLAEQDNIVDE---------------QELFACPD 290 (362)
T ss_pred CEEEEecCCccCCCCCCCCceEEEEEcCCCCEEEEeChhHhcCC-EEEEeccEecCC---------------CCCCCCce
Confidence 34556789998876642 11 25556777777655433222333 443 45778751 1111 13
Q ss_pred cEEEEEEecceeeEEEEEecCCeEEEEeCCeE-ecccCCEEEEEeecCCCcEEEE-EEE
Q psy1177 203 EVLLVNIGSLSTGGRVLATKADLAKISLTNPV-CTEVNEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 203 ~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv-~~~~gdr~ii~R~~~~~~~tiG-G~v 259 (283)
-.+++.+....+.|+|...+.+.+.+.|++|+ ++.+||..++= + . -+.+| |+|
T Consensus 291 ~~~k~R~~~~~~~~~v~~~~~~~~~v~f~~p~~avapGQ~~v~Y-~-~--~~vlGgG~I 345 (362)
T PRK14664 291 LAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFY-E-G--RRVLGGAFI 345 (362)
T ss_pred EEEEEccCCCCcCEEEEEecCCeEEEEeCCCCcCcCCCcEEEEE-E-C--CEEEEEEEE
Confidence 35677778888999998887778999999995 55699999983 2 2 26888 777
No 110
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=90.23 E-value=0.55 Score=42.65 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPI 48 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~ 48 (283)
.+++.+++... .+.+++++||++|.||++|++.|.+....|.
T Consensus 133 ~~ei~~~~~~~--~~~~~~evSAktg~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 133 RDEVEQLVGGD--ENCAYFEVSAKKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred HHHHHHHHHhc--CCCEEEEEeCCCCCCHHHHHHHHHHHhcccc
Confidence 45666666532 3578999999999999999999998655554
No 111
>PRK15494 era GTPase Era; Provisional
Probab=90.07 E-value=0.44 Score=45.36 Aligned_cols=39 Identities=36% Similarity=0.312 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+++.+++... ....+++|+||++|.|+++|+++|.++++
T Consensus 178 ~~~~~~l~~~-~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 178 NDIKAFLTEN-HPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred HHHHHHHHhc-CCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 4555565432 23468999999999999999999998665
No 112
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=89.91 E-value=0.49 Score=45.22 Aligned_cols=42 Identities=17% Similarity=0.062 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCC----CCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 4 KYVTQKWRLERTV----AEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 4 ~~~eIr~~l~~t~----~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
...++++.|.-.. ....|++++||++|.||++|++.|+++++
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455665554322 23479999999999999999999998754
No 113
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=89.83 E-value=0.53 Score=40.40 Aligned_cols=27 Identities=33% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
..+++++||++|.|+++|++.|.++++
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 347999999999999999999998664
No 114
>KOG0092|consensus
Probab=87.99 E-value=1 Score=39.93 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCC
Q psy1177 2 QVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPI 48 (283)
Q Consensus 2 ~~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~ 48 (283)
+..++|.++|.+. .+.+++-.||++|.|+++|...|.+.+|...
T Consensus 127 ~V~~~ea~~yAe~---~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 127 EVEFEEAQAYAES---QGLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred cccHHHHHHHHHh---cCCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 4567888888876 5688999999999999999999998766443
No 115
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=87.92 E-value=3.8 Score=39.61 Aligned_cols=111 Identities=14% Similarity=0.249 Sum_probs=70.0
Q ss_pred eecEEecCceEEEecccC-C-Cccccccccceeec-cCCCCCceeeEEEE-EEEEeeeeccccccCCCccccccCCCC--
Q psy1177 128 ELQFAVPGGLIGVGTKIE-P-TLCRADRLVGQVLG-AVGALPKIFIELEI-SYHLLKRLLGVRMEGDKKGAKVQKLTR-- 201 (283)
Q Consensus 128 ~v~~A~aG~rvai~l~ld-~-~i~r~di~rG~vl~-~~g~l~~~~~~~~a-~~~~l~~~~g~~~~~~~~~~~~~pl~~-- 201 (283)
-+..-.-|||-++++... | -+.+-|.....|+. ....+ .. +.+.+ .+.|+.. .++..
T Consensus 240 G~~~yTiGQRkgl~i~~~~p~yV~~~d~~~n~v~v~~~~~l-~~-~~~~~~~~~w~~~---------------~~~~~~~ 302 (360)
T PRK14665 240 GYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKAL-EK-TEMWLKDWNIVNE---------------SRLLGCD 302 (360)
T ss_pred CEEeeecCCcccCCCCCCCceEEEEEcCCCCEEEEEChHHh-cC-CEEEEEeceEcCC---------------CCCCCCe
Confidence 345557889988766421 1 24555666666543 32333 22 24443 4778741 12222
Q ss_pred CcEEEEEEecceeeEEEEEecCCeEEEEeCCeE-ecccCCEEEEEeecCCCcEEEE-EEE
Q psy1177 202 NEVLLVNIGSLSTGGRVLATKADLAKISLTNPV-CTEVNEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 202 ~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv-~~~~gdr~ii~R~~~~~~~tiG-G~v 259 (283)
.-.+++.+....+.|+|...+.+.+.+.|++|. ++.+||-.++= + . -+.+| |+|
T Consensus 303 ~~~~k~R~~~~~~~~~~~~~~~~~~~v~f~~p~~av~pGQ~~v~Y-~-~--~~vlGgg~I 358 (360)
T PRK14665 303 DIIVKIRYRKQENHCTVTITPDNLLHVQLHEPLTAIAEGQAAAFY-K-D--GLLLGGGII 358 (360)
T ss_pred EEEEEEecCCCCcCEEEEEccCCEEEEEeCCCCcccCCCcEEEEE-E-C--CEEEEEEEE
Confidence 235677778888999998887778999999995 55699999983 2 2 26888 766
No 116
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=87.53 E-value=1.1 Score=39.04 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCC
Q psy1177 7 TQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIP 47 (283)
Q Consensus 7 eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p 47 (283)
+++++.+.. .++|++++||++|.||++|++.+.+.+-..
T Consensus 138 ~~~~~~~~~--~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 138 VLSVLVRKS--WKCGYLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred HHHHHHHHh--cCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 344444432 368999999999999999999998755433
No 117
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=86.33 E-value=0.89 Score=38.85 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 7 TQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 7 eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+..++.... +++++++||++|.||++|++.|.+.+.
T Consensus 128 ~~~~~~~~~---~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 128 EGAALARRL---GCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred HHHHHHHHh---CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 344454443 468999999999999999999987543
No 118
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=85.95 E-value=1.1 Score=39.94 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCC-----------CCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTV-----------AEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~-----------~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++|.+.+..... +.+++++.+||++|.||++|++.|.+.+
T Consensus 139 ~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 139 LEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 456666665433 3458999999999999999999888643
No 119
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=85.90 E-value=5 Score=38.40 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=71.2
Q ss_pred ceecEEecCceEEEecc-c-CC-CccccccccceeeccCCCCCceeeEEE-EEEEEeeeeccccccCCCccccccCCCC-
Q psy1177 127 NELQFAVPGGLIGVGTK-I-EP-TLCRADRLVGQVLGAVGALPKIFIELE-ISYHLLKRLLGVRMEGDKKGAKVQKLTR- 201 (283)
Q Consensus 127 ~~v~~A~aG~rvai~l~-l-d~-~i~r~di~rG~vl~~~g~l~~~~~~~~-a~~~~l~~~~g~~~~~~~~~~~~~pl~~- 201 (283)
+-+..-.-|||-+|++. . +| -+.+.|.....|+..++..-.. +.+. ..+.|+.. .+...
T Consensus 226 ~G~~~yTiGQr~gl~~~~~~~p~yV~~~d~~~n~v~v~~~~~l~~-~~~~~~~~~w~~~---------------~~~~~~ 289 (346)
T PRK00143 226 KGLMYYTIGQRKGLGIGGDGEPWYVVGKDPETNTVVVGQGEALYS-RELIASDLNWVGG---------------EPPEEP 289 (346)
T ss_pred CCEEeEecCCcCCCCCCCCCcceEEEEEcCCCCEEEEEChhHhcc-cEEEEEeeeecCC---------------CCCCCC
Confidence 34555678999888764 1 22 3556677777776555432222 3444 44778752 11121
Q ss_pred -CcEEEEEEecceeeEEEEEecCCeEEEEeCCeEe-cccCCEEEEEeecCCCcEEEE-EEE
Q psy1177 202 -NEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC-TEVNEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 202 -~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~-~~~gdr~ii~R~~~~~~~tiG-G~v 259 (283)
.-.+++.+....+.|+|. .+.+.+.+.|++|.- +.+||..++= .. -+.+| |+|
T Consensus 290 ~~~~~~~R~~~~~~~~~~~-~~~~~~~v~~~~p~~~v~pGQ~~v~Y--~~--~~~lggg~I 345 (346)
T PRK00143 290 FECTAKIRYRQKPVPATVE-LEDDRVEVEFDEPQRAVTPGQAAVFY--DG--DRVLGGGII 345 (346)
T ss_pred EEEEEEEccCCCCcCEEEE-EcCCEEEEEeCCCccccCCCcEEEEE--EC--CEEEEEEEE
Confidence 234566677778899988 777789999999964 5699999983 22 36888 765
No 120
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=85.67 E-value=1.7 Score=37.11 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++.+++.... +.|++++||++|.|+++|++.|.+.+
T Consensus 127 ~~~~~l~~~~---~~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 127 EDGERLAKEY---GVPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred HHHHHHHHHc---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3444554443 36899999999999999999998765
No 121
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=85.45 E-value=1.3 Score=37.65 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++++++.... +++++++||++|.|+++|++.|.+.+
T Consensus 130 ~~~~~~~~~~---~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 130 HDVQDFADEI---KAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred HHHHHHHHHc---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4455555443 47899999999999999999999754
No 122
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=85.36 E-value=1.6 Score=42.19 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHHHHhc-C-CCCCCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 4 KYVTQKWRLER-T-VAEGAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 4 ~~~eIr~~l~~-t-~~~~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
.++++++.+.. + .+..+|++++||++|.|+++|++.|.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 301 TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 34455544432 2 2356899999999999999999888763
No 123
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=85.19 E-value=1.4 Score=38.06 Aligned_cols=38 Identities=18% Similarity=0.027 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+++++++...++ .+++++||++|.||+++++.|.+.+
T Consensus 130 ~~~~~~~~~~~~~--~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 130 GEQMDQFCKENGF--IGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred HHHHHHHHHHcCC--ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4567777766442 5899999999999999999988754
No 124
>KOG1144|consensus
Probab=85.09 E-value=2 Score=45.27 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=44.0
Q ss_pred eEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEec
Q psy1177 78 GVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGT 142 (283)
Q Consensus 78 tVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l 142 (283)
-|++-+|..|++++|-.+-+. +-.. -...+|.||+..+++|++|.-||-|+|.+
T Consensus 952 iv~GV~V~~GilkiGTPiCv~-~r~~----------~~lG~v~Sie~Nh~~vd~akkGqeVaiKi 1005 (1064)
T KOG1144|consen 952 IVLGVDVEEGILKIGTPICVP-KREF----------IDLGRVASIENNHKPVDYAKKGQEVAIKI 1005 (1064)
T ss_pred eEEEEEeecCeeecCCceEEe-ccce----------eeeeeeeeecccCcccchhhcCCeEEEEE
Confidence 456669999999999988764 3211 23479999999999999999999999966
No 125
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=85.02 E-value=0.87 Score=37.62 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=24.4
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.|++++||++|.|+++|++.|.+.++
T Consensus 70 ~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 70 GIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CCcEEEEEccccccHHHHHHHHHHHHh
Confidence 468999999999999999999998665
No 126
>PTZ00099 rab6; Provisional
Probab=85.00 E-value=1.5 Score=37.47 Aligned_cols=27 Identities=33% Similarity=0.365 Sum_probs=23.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.+++++||++|.||++|++.|.+.++
T Consensus 116 ~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 116 NTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998664
No 127
>PRK09866 hypothetical protein; Provisional
Probab=83.84 E-value=2.3 Score=44.40 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=29.3
Q ss_pred HHHHHHHh----cCCCCCCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 6 VTQKWRLE----RTVAEGAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 6 ~eIr~~l~----~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
++++++++ ...+....|+||||+.|.|++.|++.|.++
T Consensus 310 E~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 310 DQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 45555543 334456689999999999999999999975
No 128
>PRK00089 era GTPase Era; Reviewed
Probab=83.76 E-value=2.5 Score=38.77 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=25.0
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
...+++|+||++|.|+++|++.|.++++
T Consensus 144 ~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 144 DFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999999998765
No 129
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=83.74 E-value=1 Score=38.60 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.0
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+++++++||++|.|+++|.+.|.+.+
T Consensus 139 ~~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 139 MKAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999998754
No 130
>COG1160 Predicted GTPases [General function prediction only]
Probab=83.45 E-value=1.5 Score=43.45 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.2
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHh
Q psy1177 17 AEGAPVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 17 ~~~~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
+.-+|++++||++|.|++.|++.+.+
T Consensus 323 l~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 323 LDFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred ccCCeEEEEEecCCCChHHHHHHHHH
Confidence 46689999999999999999998886
No 131
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=83.23 E-value=2 Score=41.87 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.4
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.+++++||+++.||++|++.|.+.++
T Consensus 308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 308 GPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 47999999999999999999998664
No 132
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=83.18 E-value=8.2 Score=37.10 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=70.7
Q ss_pred eecEEecCceEEEecc-c-CC-CccccccccceeeccCCCCCceeeEEEE-EEEEeeeeccccccCCCccccccCC--CC
Q psy1177 128 ELQFAVPGGLIGVGTK-I-EP-TLCRADRLVGQVLGAVGALPKIFIELEI-SYHLLKRLLGVRMEGDKKGAKVQKL--TR 201 (283)
Q Consensus 128 ~v~~A~aG~rvai~l~-l-d~-~i~r~di~rG~vl~~~g~l~~~~~~~~a-~~~~l~~~~g~~~~~~~~~~~~~pl--~~ 201 (283)
-+..-.-|||-+|++. . .| -+.+.|.....|+..++......+.+.+ .+.|+.. .+. .-
T Consensus 232 G~~~yTiGQr~gl~i~~~~~p~yV~~~d~~~n~v~v~~~~~~l~~~~~~~~~~~w~~~---------------~~~~~~~ 296 (352)
T TIGR00420 232 GLWFYTIGQRKGLGIGGAAEPWFVVEKDLETNELIVSHGKPDLASRGLLAQQFHWLDD---------------EPNPFEM 296 (352)
T ss_pred CEEeEecCCcCCCCCCCCCCceEEEEEcCCCCEEEEeCCcHHHccCEEEEEeeEECCC---------------CCCCCCe
Confidence 3555678999888663 1 11 2555677777766555311111234544 4778741 111 11
Q ss_pred CcEEEEEEecceeeEEEEEecCCeEEEEeCCeE-ecccCCEEEEEeecCCCcEEEE-EEE
Q psy1177 202 NEVLLVNIGSLSTGGRVLATKADLAKISLTNPV-CTEVNEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 202 ~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv-~~~~gdr~ii~R~~~~~~~tiG-G~v 259 (283)
.-.+++.+....+.|+|..++.+.+.++|++|. .+.+||..++= + . -+.+| |+|
T Consensus 297 ~~~~k~R~~~~~~~~~~~~~~~~~~~v~f~~p~~~v~pGQ~~v~Y-~-~--~~~lggg~I 352 (352)
T TIGR00420 297 RCTVKIRYRQVPVQCKLKLLDDNLIEVIFDEPQAGVTPGQSAVLY-K-G--DICLGGGII 352 (352)
T ss_pred EEEEEEccCCCCcCEEEEEecCCEEEEEeCCCCcccCCCcEEEEE-E-C--CEEEEeEEC
Confidence 344667777888999998887778999999995 45699999983 2 2 26888 653
No 133
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=83.02 E-value=4.2 Score=36.24 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCH-----HHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNI-----EVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKP 68 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI-----~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~ 68 (283)
+++++.+....+.+.+|+++||++.-.+ ..++-.|+..-+-..+-.+..+.|-+++++.|.-|
T Consensus 157 ~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~~~~ 224 (225)
T cd01882 157 KRLKHRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDITNP 224 (225)
T ss_pred HHHHHHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecccCC
Confidence 4444433333456789999999987433 46666777522333333456678999999887543
No 134
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=82.96 E-value=1.8 Score=37.85 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++.+++.... +.+++.+||++|+||++|++.|.+.+
T Consensus 130 ~~~~~~~~~~---~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 130 DKHARFAQAN---GMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred HHHHHHHHHc---CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555543 36899999999999999999999754
No 135
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=82.51 E-value=1.9 Score=43.43 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.+++.++.. +.+++++||++++||++|+++|.+.+.
T Consensus 304 e~l~~~l~~~---g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 304 EFVRPELEAR---GWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred HHHHHHHHHc---CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444444432 468999999999999999999987653
No 136
>PRK00093 GTP-binding protein Der; Reviewed
Probab=82.14 E-value=1.9 Score=41.93 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHh
Q psy1177 17 AEGAPVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 17 ~~~~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
...+|++++||++|.||++|++.+.+
T Consensus 316 ~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 316 LDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred ccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 35689999999999999999988775
No 137
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=81.40 E-value=4.8 Score=38.91 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=58.6
Q ss_pred ecEEecCceEEEecc-c-CC-CccccccccceeeccCCCC--CceeeEEEE-EEEEeeeeccccccCCCccccccCCCCC
Q psy1177 129 LQFAVPGGLIGVGTK-I-EP-TLCRADRLVGQVLGAVGAL--PKIFIELEI-SYHLLKRLLGVRMEGDKKGAKVQKLTRN 202 (283)
Q Consensus 129 v~~A~aG~rvai~l~-l-d~-~i~r~di~rG~vl~~~g~l--~~~~~~~~a-~~~~l~~~~g~~~~~~~~~~~~~pl~~~ 202 (283)
+..-.-|||=|+++. . .| -+.+-|.....|+..++.- ....+.+.+ ++.|+.. ..+....
T Consensus 234 ~~~yTiGQRkGlgi~g~~~p~yV~~id~~~N~V~Vg~g~~~~~L~~~~~~~~~~~w~~~--------------~~~~~~~ 299 (356)
T PF03054_consen 234 IHFYTIGQRKGLGIAGYGEPLYVVEIDPETNTVVVGPGYDHEDLFSREFTVEDFNWISP--------------ELPDGNP 299 (356)
T ss_dssp CCC--TT-BTTTTTT-TSS-EEEEEEECCCTEEEEEESTT-GGGEEEEEEEECEEETT---------------S--SSCE
T ss_pred eeeEccCCCCCCCCCCCCCeEEEEEEecCCCEEEEeCCcChHHHccCEEEEEeeeeccc--------------cCcccCc
Confidence 444557788666553 1 11 2344566666665444111 112234443 3777752 1112122
Q ss_pred cEEEEE--EecceeeEEEEEecCCeEEEEeCCeE-ecccCCEEEEEeecCCCcEEEE-EEE
Q psy1177 203 EVLLVN--IGSLSTGGRVLATKADLAKISLTNPV-CTEVNEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 203 ~~~~l~--~gt~~v~~~v~~~~~~~~~l~L~~Pv-~~~~gdr~ii~R~~~~~~~tiG-G~v 259 (283)
..+.+. +....+.|+|...+.+.+.++|++|. ++.+||..++= ... +.+| |+|
T Consensus 300 ~~~~vkiR~~~~~~~~~v~~~~~~~~~V~f~eP~~avaPGQ~aVfY--~~d--~vLGgG~I 356 (356)
T PF03054_consen 300 LECQVKIRYRQKPVPCTVEPIGDGRLRVEFDEPQRAVAPGQSAVFY--DGD--RVLGGGII 356 (356)
T ss_dssp EEEEEESSTTS--EEEEEEE-SSS-EEEEEEEEEET--TTSEEEEE--ETT--EEEEEEEE
T ss_pred eEEEEEEccCCCCCCEEEEEecCCeEEEEeCCCCCCCCCCcEEEEE--ECC--EEEEEEEC
Confidence 334443 45666889998888889999999999 45699999873 222 7888 765
No 138
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=81.20 E-value=2.3 Score=36.64 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++..+++... +.+++++||++|.||++|++.|.+.+
T Consensus 131 ~~~~~~~~~~---~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 131 EDAYKFAGQM---GISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred HHHHHHHHHc---CCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 4455555543 47899999999999999999998754
No 139
>KOG0469|consensus
Probab=81.06 E-value=3 Score=42.34 Aligned_cols=126 Identities=19% Similarity=0.213 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhcCCCCCCcEEEeecCCCCCH--------------HHHHHHHHhhCCCCC--------------------
Q psy1177 3 VKYVTQKWRLERTVAEGAPVIPISAQLKYNI--------------EVLCEYITKKIPIPI-------------------- 48 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI--------------~~Ll~~L~~~i~~p~-------------------- 48 (283)
-..+||.++|+.+... +--..++++|- +.|++.|.=++|.|-
T Consensus 291 ~kkeei~~llekl~v~----lk~~~kd~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a 366 (842)
T KOG0469|consen 291 FKKEEIATLLEKLEVT----LKGDEKDLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAA 366 (842)
T ss_pred ccHHHHHHHHHHhcce----eccccccccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHh
Confidence 3457888888865432 11123444442 577777765555431
Q ss_pred -----CCCCCCceEEEEEEeecCCCCCcccCCcc-eEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEE
Q psy1177 49 -----RDFTSSPRLIVIRSFDVNKPGCEVDDLKG-GVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSL 122 (283)
Q Consensus 49 -----r~~~~~~r~~IdR~F~V~g~G~~~~~~rG-tVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sI 122 (283)
=|.++|.-|+|..-- |-+ + +| -+.-|+|.+|.+..|.+++|+--+-..++++-.+.+++.-+|--+
T Consensus 367 ~aik~CD~~aplmmYvSKMv----Pts--D--kgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMM 438 (842)
T KOG0469|consen 367 VAIKNCDPKAPLMMYVSKMV----PTS--D--KGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMM 438 (842)
T ss_pred hHhhccCCCCCeEEeeeecc----ccC--C--CceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 134577788887532 221 1 23 357899999999999999998656554555546666666666555
Q ss_pred EeCCceecEEecCceEEE
Q psy1177 123 FAEQNELQFAVPGGLIGV 140 (283)
Q Consensus 123 q~~~~~v~~A~aG~rvai 140 (283)
--+-++++.+-+|.-+|+
T Consensus 439 Gr~vepied~PaGNIiGl 456 (842)
T KOG0469|consen 439 GRFVEPIEDCPAGNIIGL 456 (842)
T ss_pred cccccccccCCCCcEEEE
Confidence 556678889999988887
No 140
>PTZ00369 Ras-like protein; Provisional
Probab=80.64 E-value=2.2 Score=36.34 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+.|++.+||++|.||++|++.|.+.+
T Consensus 141 ~~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 141 GIPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988654
No 141
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=80.50 E-value=1.8 Score=37.19 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=24.0
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.+++++||++|.||++|++.|.+.+.
T Consensus 137 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 468999999999999999999997654
No 142
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=80.42 E-value=3.2 Score=35.96 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+++++++... +.+++.+||++|.||+++++.|.+.+
T Consensus 130 ~~~~~~~a~~~---~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 130 TEQAQAYAERN---GMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred HHHHHHHHHHc---CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 45677777653 56899999999999999999988644
No 143
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=80.40 E-value=2.1 Score=42.32 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.3
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.+++++||++++|+++|++.|.+.+.
T Consensus 302 ~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 302 PKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987653
No 144
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=80.36 E-value=2.5 Score=37.07 Aligned_cols=36 Identities=22% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++..++.+..+ .+++.+||++|.||+++++.|.+.+
T Consensus 130 ~~~~~~~~~~~---~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 130 EEAEKLAKDLG---MKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred HHHHHHHHHhC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 44555555433 7899999999999999999998754
No 145
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=79.05 E-value=14 Score=35.46 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=71.2
Q ss_pred ceecEEecCceEEEeccc-CC-CccccccccceeeccCCCCCc--eeeEEEE-EEEEeeeeccccccCCCccccccCCCC
Q psy1177 127 NELQFAVPGGLIGVGTKI-EP-TLCRADRLVGQVLGAVGALPK--IFIELEI-SYHLLKRLLGVRMEGDKKGAKVQKLTR 201 (283)
Q Consensus 127 ~~v~~A~aG~rvai~l~l-d~-~i~r~di~rG~vl~~~g~l~~--~~~~~~a-~~~~l~~~~g~~~~~~~~~~~~~pl~~ 201 (283)
+-+..-.-|||-++++.. .| -|.+.|.....|+..++.-.+ ..+.+.+ .+.|+.. .+...
T Consensus 227 ~G~~~yTiGQr~gl~~~~~~p~yV~~~d~~~n~v~v~~~~~~~~l~~~~~~~~~~~w~~~---------------~~~~~ 291 (349)
T cd01998 227 KGLWFYTIGQRKGLGIASGEPWYVVEKDPETNIVVVGPGSDHEALYSDGLIAKDFNWIGD---------------PPPLE 291 (349)
T ss_pred CCEeeEecCCcccCCCCCCCcEEEEEEcCCCCEEEEECCCCChhHhcCEEEEEccEECCC---------------CCCCC
Confidence 335666789998887631 11 255566777776655522111 1234443 4778742 12221
Q ss_pred --CcEEEEEEecceeeEEEEEecCCeEEEEeCCeEe-cccCCEEEEEeecCCCcEEEE-EEE
Q psy1177 202 --NEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC-TEVNEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 202 --~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~-~~~gdr~ii~R~~~~~~~tiG-G~v 259 (283)
.-.+++.+....+.|+|...+.+.+.+.|++|.- +.+||-.++= + . -+.+| |+|
T Consensus 292 ~~~~~~~~R~~~~~~~~~~~~~~~~~~~v~~~~p~~~v~pGQ~~v~Y-~-~--~~~lggg~I 349 (349)
T cd01998 292 PLECEVKIRYRQPPVPCTIEPLDDGRLEVIFDEPQRAVAPGQAAVFY-D-G--DRVLGGGII 349 (349)
T ss_pred CEEEEEEEccCCCCcCEEEEEeCCCeEEEEeCCCCcccCCCCEEEEE-E-C--CEEEeeEEC
Confidence 2345666777789999988887789999999986 5699999983 2 2 37888 654
No 146
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=78.66 E-value=3.3 Score=35.05 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 7 TQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 7 eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+.+++.... +++++.+||++|.||++|++.|.+.+
T Consensus 127 ~~~~~~~~~---~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 127 IAKSFCDSL---NIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred HHHHHHHHc---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 334444433 45899999999999999888887654
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=78.61 E-value=3.5 Score=40.98 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
..+|++++||++|.||++|++.|.+.+
T Consensus 355 ~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 355 PWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999988644
No 148
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=78.29 E-value=16 Score=35.42 Aligned_cols=112 Identities=12% Similarity=0.039 Sum_probs=73.0
Q ss_pred ecEEecCceEEEeccc---CC-CccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcE
Q psy1177 129 LQFAVPGGLIGVGTKI---EP-TLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV 204 (283)
Q Consensus 129 v~~A~aG~rvai~l~l---d~-~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~ 204 (283)
+-.-.-|||-|+++.. ++ -+...|+..+.++..++....+.....-++.|+. ..+....-.
T Consensus 231 ~~~yTiGQR~Gl~I~~~~~~p~yVv~kd~~~n~~~V~~~~~l~~~~l~~~~~~~~~---------------~~~~~~~~~ 295 (356)
T COG0482 231 LMYYTIGQRKGLGIGGLKGEPWYVVGKDLKKNRLYVGQGEALLSVGLIAEDLNWLD---------------DAPPEEPLE 295 (356)
T ss_pred EEEEecccccccCcCCCCCCCEEEEEEecccCeEEEecchhheeeeeeeecccccc---------------cccCCCCce
Confidence 3456789999998863 33 2455677778877777765444433344477775 234555556
Q ss_pred EEEEEecce--eeEEEEEecCC--eEEEEeCCeEec-ccCCEEEEEeecCCCcEEEE-EEE
Q psy1177 205 LLVNIGSLS--TGGRVLATKAD--LAKISLTNPVCT-EVNEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 205 ~~l~~gt~~--v~~~v~~~~~~--~~~l~L~~Pv~~-~~gdr~ii~R~~~~~~~tiG-G~v 259 (283)
+.+.+.... ..+.+..+..+ ...+.|.+|..+ .+||-+++= .+ -+..| |.|
T Consensus 296 ~~~k~R~~~~~~~~~~~~~~~~~~~~~v~f~~~~~avtpGQ~~v~Y--~~--d~~lGgg~I 352 (356)
T COG0482 296 CTAKVRYRQGDEPCKVKVLSDEDVELAVKFDEPQRAVTPGQAAVLY--DG--DICLGGGII 352 (356)
T ss_pred EEEEEeccCCCCceeEEEccCCcceEEEEecCccccccCCcEEEEe--cC--CEEEeeEEe
Confidence 666666666 77887777664 444899999865 489999983 22 37888 554
No 149
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=77.89 E-value=4.8 Score=37.36 Aligned_cols=41 Identities=22% Similarity=0.075 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcC----CCCCCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 3 VKYVTQKWRLERT----VAEGAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 3 ~~~~eIr~~l~~t----~~~~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
..+.|++..+.-. ..-..|++.+||.+|.||++|.++|+++
T Consensus 184 ~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 184 RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456677666521 1124799999999999999999999975
No 150
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=77.86 E-value=3.3 Score=34.79 Aligned_cols=38 Identities=13% Similarity=0.037 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.++.+++....+. .+++.+||++|.||++|++.|.+.+
T Consensus 129 ~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 129 PAQAESVAKKQGA--FAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred HHHHHHHHHHcCC--cEEEEccCCCCCCHHHHHHHHHHHH
Confidence 4556666655432 2899999999999999999888644
No 151
>PLN03110 Rab GTPase; Provisional
Probab=76.51 E-value=3.9 Score=35.94 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+.|++++||++|.||++|++.|.+.+
T Consensus 148 ~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 148 GLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999997655
No 152
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=76.09 E-value=3.3 Score=35.31 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=24.1
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
..++++.+||++|.||+++.+.|.+.+-
T Consensus 147 ~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 147 NALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 3478999999999999999999987553
No 153
>KOG1423|consensus
Probab=74.76 E-value=3.4 Score=39.50 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.4
Q ss_pred EEEeecCCCCCHHHHHHHHHhhC
Q psy1177 22 VIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 22 iIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++++||++|.||++|.++|....
T Consensus 248 vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 248 VFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred EEEEecccccCHHHHHHHHHhcC
Confidence 89999999999999999999754
No 154
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=73.35 E-value=3.1 Score=36.79 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=24.0
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+++++++||++|.||++|++.|.+.+.
T Consensus 137 ~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 137 DCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999997653
No 155
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=73.22 E-value=4.2 Score=33.63 Aligned_cols=25 Identities=28% Similarity=0.072 Sum_probs=22.0
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
..+++++||++|.|+++|++.|.+.
T Consensus 59 ~~~ii~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 59 PTIPFKISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred CceEEEEeccCCcChhhHHHHHHHH
Confidence 4679999999999999999998753
No 156
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=72.69 E-value=5.7 Score=34.82 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 7 TQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 7 eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+..++.+.. .+.+++.+||++|.||+++++.|.+.+
T Consensus 127 ~~~~~a~~~--~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 127 QGEKFAQQI--TGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred HHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 334444432 247899999999999999988887543
No 157
>COG1160 Predicted GTPases [General function prediction only]
Probab=72.50 E-value=8.5 Score=38.28 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=31.5
Q ss_pred cCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCC-CC---CCCceEEEE
Q psy1177 14 RTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIR-DF---TSSPRLIVI 60 (283)
Q Consensus 14 ~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r-~~---~~~~r~~Id 60 (283)
++++. .++|+||.+|.||.+|++++.+.+|.+++ .. +.+.++.|.
T Consensus 136 slG~g--~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaii 184 (444)
T COG1160 136 SLGFG--EPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAII 184 (444)
T ss_pred hcCCC--CceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEE
Confidence 44554 57999999999999999999987752222 11 135666654
No 158
>PLN03118 Rab family protein; Provisional
Probab=71.99 E-value=3.6 Score=35.72 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=23.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+++++++||++|.|+++|++.|.+.+
T Consensus 151 ~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 151 GCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999754
No 159
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=71.98 E-value=7.6 Score=37.28 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=25.9
Q ss_pred HHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 10 WRLERTVAEGAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 10 ~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
++++..++....++++||++|.|+++|++.|.++
T Consensus 118 ~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 118 KRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 4455444433358999999999999999999864
No 160
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=70.35 E-value=4.8 Score=33.94 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=22.9
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.+++++||+++.|+++|++.|.+.++
T Consensus 76 ~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 76 EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 56899999999999999999998653
No 161
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=69.77 E-value=5.7 Score=40.84 Aligned_cols=25 Identities=44% Similarity=0.547 Sum_probs=22.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
++|++|+||++|.|+++|++.|.+.
T Consensus 129 g~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 129 GVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999999864
No 162
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=69.32 E-value=4.6 Score=33.60 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.+++++||++|.|++++++.|.+.+.
T Consensus 137 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 137 GAAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987653
No 163
>PLN03108 Rab family protein; Provisional
Probab=69.15 E-value=7.3 Score=33.98 Aligned_cols=36 Identities=19% Similarity=0.074 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++..++++.. +.+++.+||++|.||+++++.|.+.+
T Consensus 132 ~~~~~~~~~~---~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 132 EEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred HHHHHHHHHc---CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4555666543 46899999999999999887776543
No 164
>PRK00098 GTPase RsgA; Reviewed
Probab=69.03 E-value=7.1 Score=36.42 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHH
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYIT 41 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~ 41 (283)
+.+++++||++|.|+++|++.|.
T Consensus 141 g~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 141 GYDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred CCeEEEEeCCCCccHHHHHhhcc
Confidence 35899999999999999988774
No 165
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=68.66 E-value=5.4 Score=37.17 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.6
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.|++++||++|.|+++|++.|.++.
T Consensus 213 ~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 213 PPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998753
No 166
>PRK12288 GTPase RsgA; Reviewed
Probab=67.41 E-value=6.3 Score=37.81 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHh
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
+.+++++||++|.|+++|++.|..
T Consensus 182 g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 182 GYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred CCeEEEEeCCCCcCHHHHHHHHhh
Confidence 468999999999999999999975
No 167
>PRK12289 GTPase RsgA; Reviewed
Probab=66.00 E-value=5.6 Score=38.32 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.0
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHh
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
+.+++++||++|.||++|++.|..
T Consensus 149 g~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 149 GYQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred CCeEEEEEcCCCCCHHHHhhhhcc
Confidence 357999999999999999998864
No 168
>COG2262 HflX GTPases [General function prediction only]
Probab=65.85 E-value=5.3 Score=39.26 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.8
Q ss_pred cEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 21 PVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 21 piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.|++||++|+|++.|++.|.+.++
T Consensus 332 ~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 332 NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 5899999999999999999998665
No 169
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=65.81 E-value=10 Score=39.83 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=24.3
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 17 AEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 17 ~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
...+|++++||++|.|+++|++.+.+..
T Consensus 593 ~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 593 VTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999999988744
No 170
>PRK13796 GTPase YqeH; Provisional
Probab=64.93 E-value=14 Score=35.65 Aligned_cols=32 Identities=31% Similarity=0.179 Sum_probs=25.0
Q ss_pred HhcCCCCCCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 12 LERTVAEGAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 12 l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
.+..++....++.+||++|.|+++|++.|.++
T Consensus 126 ~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 126 AKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34444443479999999999999999999864
No 171
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=63.89 E-value=11 Score=35.87 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=24.2
Q ss_pred CCCcEEEeecCCCCCHHHHHH-HHHhhCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCE-YITKKIP 45 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~-~L~~~i~ 45 (283)
...++||+||+.+.|+++|.+ .|.+++|
T Consensus 241 ~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 241 PDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred CCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 356899999999999999998 5887776
No 172
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=62.64 E-value=6.6 Score=38.89 Aligned_cols=27 Identities=41% Similarity=0.400 Sum_probs=24.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.+++++||++|.||++|+++|.+.+.
T Consensus 344 ~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 344 GKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred CCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 568999999999999999999998654
No 173
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=62.41 E-value=7.3 Score=34.09 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+++++.+||++|.||+++.+.|.+.+
T Consensus 127 ~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 127 KNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999998754
No 174
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=60.74 E-value=12 Score=33.65 Aligned_cols=36 Identities=14% Similarity=-0.059 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCC-cEEEeecCCCC-CHHHHHHHHHhh
Q psy1177 5 YVTQKWRLERTVAEGA-PVIPISAQLKY-NIEVLCEYITKK 43 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~-piIpvSA~~g~-nI~~Ll~~L~~~ 43 (283)
+++.++|++..+ + +++.+||++|. ||+++.+.|.+.
T Consensus 149 ~~e~~~~a~~~~---~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 149 YEQGCALAKQLG---AEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred HHHHHHHHHHcC---CCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 456667776653 4 68999999998 899988887654
No 175
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=58.23 E-value=9 Score=33.75 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+.+++.+||++|.||+++++.|.+.+
T Consensus 145 ~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 145 KNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred cCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998888654
No 176
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=58.08 E-value=9.3 Score=38.10 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.5
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.+.++|++||++|+||+.|.++|.+.+.
T Consensus 349 ~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 349 NGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred CCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 3458999999999999999999998654
No 177
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=57.75 E-value=16 Score=33.13 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHh
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
+.+++.+||++|.||++|.+.|.+
T Consensus 97 g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 97 GYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCeEEEEecCCchhHHHHHhhhcC
Confidence 578999999999999999988764
No 178
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=57.73 E-value=19 Score=31.88 Aligned_cols=41 Identities=29% Similarity=0.188 Sum_probs=34.1
Q ss_pred EeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC-CceecEEecCceEEEecc
Q psy1177 88 VLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE-QNELQFAVPGGLIGVGTK 143 (283)
Q Consensus 88 ~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~-~~~v~~A~aG~rvai~l~ 143 (283)
.+++||++++- +.. ..|.||+.. ++.+..|.+.+--.+...
T Consensus 74 ~l~vGDei~vd--~e~-------------veITSIE~~~gkRV~~A~veeIeTVWgr 115 (201)
T COG1326 74 TLKVGDEIEVD--GEE-------------VEITSIELGGGKRVKSAKVEEIETVWGR 115 (201)
T ss_pred eEecCCEEEEc--CCE-------------EEEEEEeeCCCccccccccceeeeEeee
Confidence 47899999995 333 899999999 788999999998888653
No 179
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=56.53 E-value=86 Score=23.79 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=48.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcc-eEEEEEEEeeEeeCCCEEEEecCceeecCCCcccc
Q psy1177 34 EVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKG-GVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTC 112 (283)
Q Consensus 34 ~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rG-tVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~ 112 (283)
..|+-.|...-+.|-.--+..+.|-+||+-.+.-. +..+..| .+++|.|-...+++++.|-| |+.-.
T Consensus 3 ~nL~R~i~~~k~~~l~WR~~rpY~lad~~e~~~~~--~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GD--------- 70 (83)
T smart00785 3 LNLLRFLSVMKPRPLSWRDQHPYMLADRVEDITDE--EDPKVDRTLVVYGYVRGTGLNANQLVHI-PGLGD--------- 70 (83)
T ss_pred HHHHHHHHhccCCCCcccCCCCeEEEEEeEecCCC--CCCccCcEEEEEEEEcCCCCCCCCEEEe-CCcCC---------
Confidence 34566666422222222355678999998776421 1111123 45899999999999999888 45444
Q ss_pred ccceEEEEEEEeCC
Q psy1177 113 KPIFSRIVSLFAEQ 126 (283)
Q Consensus 113 ~p~~~kV~sIq~~~ 126 (283)
-.|.+|+.-.
T Consensus 71 ----fqi~~I~~~~ 80 (83)
T smart00785 71 ----FQISKIEALP 80 (83)
T ss_pred ----eEeeEEeecC
Confidence 6788877643
No 180
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=56.43 E-value=14 Score=39.42 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=23.4
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++|++|+||.+|+|+++|++.+.+..
T Consensus 142 G~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 142 GCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 47999999999999999999999743
No 181
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=56.09 E-value=19 Score=29.66 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=20.6
Q ss_pred EEEeecCCCCCHHHHHHHHHhhC
Q psy1177 22 VIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 22 iIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++++||+++.|+++|++.|.++.
T Consensus 72 ~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 72 AFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEeeccccccHHHHHHHHHHHH
Confidence 68999999999999999998754
No 182
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=54.91 E-value=12 Score=39.01 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
++|++|+||.+|.|+++|++.+.+..+
T Consensus 138 GvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 138 GVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred CCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 699999999999999999999987433
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=54.86 E-value=21 Score=34.54 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=23.4
Q ss_pred cEEEeecCCCCCHHHHHHHHHhhCCC
Q psy1177 21 PVIPISAQLKYNIEVLCEYITKKIPI 46 (283)
Q Consensus 21 piIpvSA~~g~nI~~Ll~~L~~~i~~ 46 (283)
+++++||.+|.|+++|++.+.+.++.
T Consensus 136 ~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 136 EPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred CeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 68999999999999999999987654
No 184
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=52.22 E-value=22 Score=32.60 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.+++++||.++.|+++|++.|.+.++
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 368999999999999999999987654
No 185
>PRK11058 GTPase HflX; Provisional
Probab=52.04 E-value=13 Score=36.58 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.7
Q ss_pred EEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 22 VIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 22 iIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
++++||++|.||++|++.|.+.+.
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999998663
No 186
>PRK03003 GTP-binding protein Der; Reviewed
Probab=51.87 E-value=20 Score=35.54 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=21.8
Q ss_pred EEEeecCCCCCHHHHHHHHHhhCCC
Q psy1177 22 VIPISAQLKYNIEVLCEYITKKIPI 46 (283)
Q Consensus 22 iIpvSA~~g~nI~~Ll~~L~~~i~~ 46 (283)
.+++||++|.||++|++.|.+.++.
T Consensus 176 ~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 176 PHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred eEEEEcCCCCCcHHHHHHHHhhccc
Confidence 4699999999999999999986643
No 187
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.64 E-value=38 Score=26.10 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=35.1
Q ss_pred cCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEe
Q psy1177 197 QKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 235 (283)
Q Consensus 197 ~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~ 235 (283)
+.++.|..+.+++|-.+++|+|.-.+....+|..++-|+
T Consensus 19 eeV~~gd~vel~~grVhIpG~vv~~n~g~l~l~~esdmi 57 (91)
T COG4013 19 EEVDVGDYVELYFGRVHIPGRVVHYNDGLLRLVHESDMI 57 (91)
T ss_pred hcCCCCCEEEEEEEEEEeccEEEEeeccEEEEEEecccc
Confidence 468899999999999999999999998899998888665
No 188
>PRK01889 GTPase RsgA; Reviewed
Probab=51.49 E-value=21 Score=34.22 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.7
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHH
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYIT 41 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~ 41 (283)
.+.+++++||++|.|+++|.++|.
T Consensus 170 ~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 170 PGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCcEEEEECCCCccHHHHHHHhh
Confidence 468999999999999999999885
No 189
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=51.14 E-value=21 Score=30.67 Aligned_cols=33 Identities=33% Similarity=0.292 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHh
Q psy1177 7 TQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 7 eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
++.+..+.. +.+++.+|+.+++|+++|.+.|..
T Consensus 3 ~~~~~y~~~---gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 3 ELLEQYEKL---GYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHHHT---TSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHc---CCcEEEEeCCCCcCHHHHHHHhcC
Confidence 444445554 456999999999999999998875
No 190
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=50.61 E-value=35 Score=24.65 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=33.8
Q ss_pred EEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecC
Q psy1177 23 IPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPG 100 (283)
Q Consensus 23 IpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~ 100 (283)
+.++.-.+..+.+|++.|....+..........++. ||| .++. .+=.++-||+|.|+|-
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~------vNg----------~~v~---~~~~l~~gD~v~i~pp 76 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIA------VNG----------EYVR---LDTPLKDGDEVAIIPP 76 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEE------ECC----------eEcC---CCcccCCCCEEEEeCC
Confidence 444444577899999999864432100011122233 443 3333 4456899999999984
No 191
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=50.10 E-value=66 Score=23.82 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=33.5
Q ss_pred EEeecCCCCCHHHHHHHHHhhCCCCCCC-CCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecC
Q psy1177 23 IPISAQLKYNIEVLCEYITKKIPIPIRD-FTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPG 100 (283)
Q Consensus 23 IpvSA~~g~nI~~Ll~~L~~~i~~p~r~-~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~ 100 (283)
+.++ ..+..+.+|++.|.+..+.-... ..+.++..| |+ .++ + .+=.|+.||+|.|.|-
T Consensus 19 ~~v~-~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aV------N~----------~~~-~--~~~~l~dgDeVai~PP 77 (81)
T PRK11130 19 LELA-ADFPTVEALRQHLAQKGDRWALALEDGKLLAAV------NQ----------TLV-S--FDHPLTDGDEVAFFPP 77 (81)
T ss_pred EEec-CCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEE------CC----------EEc-C--CCCCCCCCCEEEEeCC
Confidence 4454 34678999999998754321111 123344444 33 111 1 2335899999999994
No 192
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=49.39 E-value=26 Score=28.21 Aligned_cols=20 Identities=45% Similarity=0.667 Sum_probs=15.7
Q ss_pred eEEEEEEEeeEeeCCCEEEE
Q psy1177 78 GVAGGSILRGVLKVGMEIEV 97 (283)
Q Consensus 78 tVvtGtv~sG~l~vGD~v~i 97 (283)
++..--+..|.|++||+|+|
T Consensus 114 G~~~~V~~~G~I~vGD~V~V 133 (133)
T PF03473_consen 114 GVYARVIKGGTIRVGDEVEV 133 (133)
T ss_dssp -EEEEEEE-EEEETTSEEEE
T ss_pred eEEEEeccCCEEccCCeEEC
Confidence 45677789999999999986
No 193
>PRK09602 translation-associated GTPase; Reviewed
Probab=48.47 E-value=19 Score=35.26 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCCcEEEeecCCCCCHHH-HHHHHHhhCC
Q psy1177 18 EGAPVIPISAQLKYNIEV-LCEYITKKIP 45 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~-Ll~~L~~~i~ 45 (283)
...+++|+||..+.|+++ |++.+.+++|
T Consensus 243 ~~~~vvpISA~~e~~l~~~l~~~i~~~lp 271 (396)
T PRK09602 243 KYYIVVPTSAEAELALRRAAKAGLIDYIP 271 (396)
T ss_pred CCCcEEEEcchhhhhHHHHHHHhHHhhCC
Confidence 346799999999999998 8888888765
No 194
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=47.97 E-value=1.2e+02 Score=23.01 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=47.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcc-eEEEEEEEeeEeeCCCEEEEecCceeecCCCccccc
Q psy1177 35 VLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKG-GVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCK 113 (283)
Q Consensus 35 ~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rG-tVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~ 113 (283)
.|+-.|...-+-+-.--+..+.|-+||+=.+......-.+..| ..|+|.|-...++++..|-|. +.--
T Consensus 4 nl~R~i~~~k~~~i~WR~~r~y~lad~~e~~~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIp-G~GD---------- 72 (85)
T PF08142_consen 4 NLLRFISVQKPRPISWRDQRPYMLADRVEFVPDPEDESENEDGTLKVYGYVRGSPLSVNQLVHIP-GVGD---------- 72 (85)
T ss_pred HHHHHHHhCccCCCccccCCCeEEEEEEEecCCccccccCCceEEEEEEEEccccccCCCEEEeC-CcCC----------
Confidence 4555666422222222345678999998766544321110123 358999999999999999984 5444
Q ss_pred cceEEEEEEEeCC
Q psy1177 114 PIFSRIVSLFAEQ 126 (283)
Q Consensus 114 p~~~kV~sIq~~~ 126 (283)
-.|.+|+...
T Consensus 73 ---Fqi~~I~~~~ 82 (85)
T PF08142_consen 73 ---FQISKIESLP 82 (85)
T ss_pred ---eEeeEeeecC
Confidence 5777776543
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=47.83 E-value=26 Score=33.99 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.4
Q ss_pred cEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 21 PVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 21 piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.++++||.+|.|+++|++.|.+..+
T Consensus 138 ~~~~iSa~~g~gv~~l~~~I~~~~~ 162 (435)
T PRK00093 138 EPYPISAEHGRGIGDLLDAILEELP 162 (435)
T ss_pred CCEEEEeeCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999986443
No 196
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=45.56 E-value=18 Score=33.51 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.5
Q ss_pred CCcEEEeecCCCCCHHHHHHHHH
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYIT 41 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~ 41 (283)
+.+++++||++|.|+++|.+.|.
T Consensus 138 g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 138 GYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred CCeEEEEECCCCccHHHHHhhhc
Confidence 46999999999999999988776
No 197
>KOG0091|consensus
Probab=45.20 E-value=31 Score=30.27 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 3 VKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
..++|-.+|.+..+. .+|..||++|+|+++-.+.|.+.
T Consensus 134 Vt~EEaEklAa~hgM---~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 134 VTAEEAEKLAASHGM---AFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred ccHHHHHHHHHhcCc---eEEEecccCCCcHHHHHHHHHHH
Confidence 346777777776654 48999999999998666666543
No 198
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=44.62 E-value=48 Score=25.65 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHhhCCCCCC---CCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecC
Q psy1177 29 LKYNIEVLCEYITKKIPIPIR---DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPG 100 (283)
Q Consensus 29 ~g~nI~~Ll~~L~~~i~~p~r---~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~ 100 (283)
.+.+|.+|+++|.+..+.... ..++.+|=.|. .-||+-..++- .| ++=.++.||+|.|.|.
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~--VlvN~~di~~l--~g-------~~t~L~dgD~v~i~P~ 90 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGII--VLINDTDWELL--GE-------EDYILEDGDHVVFIST 90 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEE--EEECCcccccc--CC-------cccCCCCcCEEEEECC
Confidence 677999999999876542221 11233331111 12555421111 12 1224789999999985
No 199
>KOG0464|consensus
Probab=43.88 E-value=10 Score=37.78 Aligned_cols=74 Identities=22% Similarity=0.169 Sum_probs=51.5
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEE-EE----EeecCCCCCcccCCcceEEEEEEEeeEeeCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIV-IR----SFDVNKPGCEVDDLKGGVAGGSILRGVLKVG 92 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~I-dR----~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vG 92 (283)
+-+||...||.++.||..|+++..-++|.|+...- .|..|. |+ .|.| -.++-||-.+-=++.+|.++.+
T Consensus 291 ~a~~i~cgsaiknkgiqplldavtmylpspeerny-eflqwykddlcalafkv-----lhdkqrg~l~fmriysgsi~~~ 364 (753)
T KOG0464|consen 291 KAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNY-EFLQWYKDDLCALAFKV-----LHDKQRGPLSFMRIYSGSIHNN 364 (753)
T ss_pred hhcceehhhhhcccCccchhhhhhhccCChhhcch-HHHhhhhhhHHHHhhhh-----hcccccCceeEEEEecccccCc
Confidence 45799999999999999999999988887764332 344433 32 2222 1234578777789999999876
Q ss_pred CEEEE
Q psy1177 93 MEIEV 97 (283)
Q Consensus 93 D~v~i 97 (283)
-.|.=
T Consensus 365 ~ai~n 369 (753)
T KOG0464|consen 365 LAIFN 369 (753)
T ss_pred eeeee
Confidence 55443
No 200
>KOG0410|consensus
Probab=43.81 E-value=15 Score=35.57 Aligned_cols=58 Identities=19% Similarity=0.066 Sum_probs=38.6
Q ss_pred EEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCc
Q psy1177 22 VIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGL 101 (283)
Q Consensus 22 iIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~ 101 (283)
.|++||++|+|+++|++++++.+..... -...+++.|. |-...|-+..+|++...|..
T Consensus 318 ~v~isaltgdgl~el~~a~~~kv~~~t~--~~e~~Lr~d~--------------------gd~~~~wly~e~~vvk~~~i 375 (410)
T KOG0410|consen 318 DVGISALTGDGLEELLKAEETKVASETT--VDEDQLRNDD--------------------GDDADGWLYSEDEVVKVDAI 375 (410)
T ss_pred ccccccccCccHHHHHHHHHHHhhhhhe--eeeEEeecCC--------------------CccchhheeecceEEEeecc
Confidence 7999999999999999999985432111 1223455551 22345667777887777654
No 201
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=43.41 E-value=24 Score=33.63 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=25.2
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 17 AEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 17 ~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.-+.|++-.||.+|+||++|.++++++.
T Consensus 226 ~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 226 GWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred CCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999864
No 202
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=43.05 E-value=33 Score=33.28 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 3 VKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+..++.++.+....... +..+|||++++|+++|+..+.+.+
T Consensus 292 e~~~~~~~~l~~~~~~~-~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 292 EELEELKKALAEALGWE-VFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred HHHHHHHHHHHHhcCCC-cceeeehhcccCHHHHHHHHHHHH
Confidence 34555555555433222 233399999999999998888654
No 203
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=42.11 E-value=21 Score=32.97 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.+++++||.++.|+++|++.|.+.++
T Consensus 80 ~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 80 GIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 368999999999999999999887543
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=42.10 E-value=36 Score=35.79 Aligned_cols=25 Identities=20% Similarity=0.188 Sum_probs=21.8
Q ss_pred EEEeecCCCCCHHHHHHHHHhhCCC
Q psy1177 22 VIPISAQLKYNIEVLCEYITKKIPI 46 (283)
Q Consensus 22 iIpvSA~~g~nI~~Ll~~L~~~i~~ 46 (283)
.+|+||++|.||++|++.|.+.++.
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhccc
Confidence 5799999999999999999986643
No 205
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=41.80 E-value=39 Score=32.61 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.7
Q ss_pred cEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 21 PVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 21 piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
..+|+||..|.|+++|++.|-+.+
T Consensus 265 ~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 265 NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ceEEEecccCCCHHHHHHHHHHhh
Confidence 789999999999999999998743
No 206
>PRK04950 ProP expression regulator; Provisional
Probab=39.92 E-value=41 Score=30.28 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=36.2
Q ss_pred ccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEec
Q psy1177 196 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCT 236 (283)
Q Consensus 196 ~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~ 236 (283)
...|+.|+.+.+.+|..-+.|+|..+.++-+++.|+.=|.+
T Consensus 164 ~~~l~~gq~v~vk~g~~~~~a~i~ei~kd~v~vql~~Gl~~ 204 (213)
T PRK04950 164 ISELTVGQAVKVKAGKSAMDATVLEITKDDVRVQLDSGLSM 204 (213)
T ss_pred HHHhccCCEEEEeccCCCCceEEEEEecCcEEEEcCCCcEE
Confidence 35689999999999999999999999999999999875543
No 207
>KOG0094|consensus
Probab=35.25 E-value=46 Score=29.92 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIP 47 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p 47 (283)
++-++.+||+.|.||.+|...|...+|-+
T Consensus 159 ~a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 159 NAEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 56899999999999999999998766544
No 208
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=32.27 E-value=1.2e+02 Score=23.47 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCC--cccCCcceE
Q psy1177 2 QVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGC--EVDDLKGGV 79 (283)
Q Consensus 2 ~~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~--~~~~~rGtV 79 (283)
|++|+++.++++...-+ .+..-++.|.+.-..| +.|--+-+=.-|.-..+|- .+.|++-++
T Consensus 5 qEhy~kvv~yA~sI~D~-------------tl~~ClerLk~We~n~----~~~ceIELY~DfApySFgF~e~ypdG~~gi 67 (95)
T PF13496_consen 5 QEHYDKVVQYAESIGDS-------------TLQKCLERLKQWEKNP----NHPCEIELYYDFAPYSFGFAERYPDGRRGI 67 (95)
T ss_pred HHHHHHHHHHHHHhcch-------------HHHHHHHHHHHHHhCC----CCCeEEEEEeccCccccceeEEccCCCcce
Confidence 68899999988764321 2344455555432223 3333333333344444553 344665568
Q ss_pred EEEEEEeeE
Q psy1177 80 AGGSILRGV 88 (283)
Q Consensus 80 vtGtv~sG~ 88 (283)
|+|-|..|.
T Consensus 68 vGGllyhg~ 76 (95)
T PF13496_consen 68 VGGLLYHGC 76 (95)
T ss_pred EEeEEecCC
Confidence 899999993
No 209
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=1.2e+02 Score=26.44 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=39.8
Q ss_pred CCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCEEEE
Q psy1177 198 KLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIAL 244 (283)
Q Consensus 198 pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr~ii 244 (283)
++..|..+.+.-+.....++|..+.++.|.+-+++|++ |..+..
T Consensus 90 ~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLA---GktL~f 133 (174)
T COG1047 90 ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLA---GKTLHF 133 (174)
T ss_pred CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCC---CCeEEE
Confidence 78999999998888889999999999999999999999 776654
No 210
>PF09870 DUF2097: Uncharacterized protein conserved in archaea (DUF2097); InterPro: IPR019208 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.52 E-value=1.4e+02 Score=23.07 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=33.8
Q ss_pred ccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEe
Q psy1177 196 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 235 (283)
Q Consensus 196 ~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~ 235 (283)
...++.+..+.+++|-..+.|+|..++...++|.++.-+.
T Consensus 16 ~~nV~e~D~lEisygRv~vpG~V~~~~~~~~~l~~~~~~~ 55 (86)
T PF09870_consen 16 KNNVKEGDYLEISYGRVHVPGEVLSIEDGFLRLQLDGELI 55 (86)
T ss_pred HhcCCCCCEEEEEeeEEEeeeEEEEeeeeEEEEEEcCccc
Confidence 3578999999999999999999999988777777776544
No 211
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=29.18 E-value=1.4e+02 Score=21.81 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=31.7
Q ss_pred EeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecC
Q psy1177 24 PISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPG 100 (283)
Q Consensus 24 pvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~ 100 (283)
.++.-.+..+.+|++.|....|...+ ...... +.+|+ .++. .+=.++-||+|.|.|-
T Consensus 22 ~~~~~~~~tv~~L~~~l~~~~p~l~~-~~~~~~------vavN~----------~~v~---~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 22 TLELPAGSTTADCLAELVAKFPSLEE-VRSCCV------LALNE----------EYTT---ESAALKDGDELAIIPP 78 (82)
T ss_pred EEECCCCCcHHHHHHHHHHHChhHHH-HhhCcE------EEECC----------EEcC---CCcCcCCCCEEEEeCC
Confidence 33334578899999999864321111 011122 33443 1221 2335789999999984
No 212
>KOG1532|consensus
Probab=28.61 E-value=37 Score=32.21 Aligned_cols=30 Identities=3% Similarity=0.062 Sum_probs=25.6
Q ss_pred CCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 15 TVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 15 t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.++.+...+-|||.+|.|.++++.++++.+
T Consensus 234 eFY~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 234 EFYRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred HHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 456889999999999999998888887644
No 213
>PRK15452 putative protease; Provisional
Probab=28.24 E-value=92 Score=31.01 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=31.7
Q ss_pred EeeCCCEEEEe-cCceeecCCCccccccceEEEEEEE-eCCceecEEe-cCceEEEec
Q psy1177 88 VLKVGMEIEVR-PGLVSKDSEGKLTCKPIFSRIVSLF-AEQNELQFAV-PGGLIGVGT 142 (283)
Q Consensus 88 ~l~vGD~v~i~-P~~~~~~~~~~~~~~p~~~kV~sIq-~~~~~v~~A~-aG~rvai~l 142 (283)
.+++||.|+|. |.+. ...+|.+|+ ..++.++.|. +|+.|.+.+
T Consensus 382 ~~~~gd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (443)
T PRK15452 382 KFSVGDSLELMTPQGN------------INFTLERMENRKGEAMEVAPGSGHTVWLPV 427 (443)
T ss_pred CCCCCCEEEEeecCCc------------eEEEeehhccCCCCEeeeecCCCcEEEEeC
Confidence 46899999997 3322 126788886 6688888884 899988854
No 214
>KOG0097|consensus
Probab=27.67 E-value=62 Score=27.63 Aligned_cols=33 Identities=24% Similarity=0.145 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeecCCCCCHH-HHHHH
Q psy1177 4 KYVTQKWRLERTVAEGAPVIPISAQLKYNIE-VLCEY 39 (283)
Q Consensus 4 ~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~-~Ll~~ 39 (283)
.|+|-++|.+..+ .-++..||++|.|++ ..++.
T Consensus 135 ~yeeak~faeeng---l~fle~saktg~nvedafle~ 168 (215)
T KOG0097|consen 135 TYEEAKEFAEENG---LMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred cHHHHHHHHhhcC---eEEEEecccccCcHHHHHHHH
Confidence 4888899988654 357889999999996 33443
No 215
>KOG0078|consensus
Probab=27.42 E-value=77 Score=28.44 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=24.4
Q ss_pred HHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 10 WRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 10 ~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.|+..+ ++++.-+||++|.||++..-.|...+
T Consensus 142 ~lA~e~---G~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 142 ALAREY---GIKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred HHHHHh---CCeEEEccccCCCCHHHHHHHHHHHH
Confidence 444444 68899999999999997777776543
No 216
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=26.34 E-value=1.6e+02 Score=22.41 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=17.7
Q ss_pred EeeCCCEEEEecCceeecCCCccccccceEEEEEEEe
Q psy1177 88 VLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFA 124 (283)
Q Consensus 88 ~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~ 124 (283)
.+++||+|... ||.. .+|.++.-
T Consensus 37 ~L~~Gd~VvT~-gGi~-------------G~V~~i~d 59 (84)
T TIGR00739 37 SLKKGDKVLTI-GGII-------------GTVTKIAE 59 (84)
T ss_pred hCCCCCEEEEC-CCeE-------------EEEEEEeC
Confidence 47889999887 6665 78888863
No 217
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=25.98 E-value=1.1e+02 Score=22.27 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecC
Q psy1177 30 KYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPG 100 (283)
Q Consensus 30 g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~ 100 (283)
+..+.+|++.|.+..|. -.+.....+.. ||+- .+. .+=.++.||+|.|+|-
T Consensus 26 ~~tv~~L~~~L~~~~p~-l~~~~~~~~v~------vn~~----------~v~---~~~~l~dgDevai~Pp 76 (80)
T TIGR01682 26 STTVGELKEHLAKEGPE-LAASRGQVMVA------VNEE----------YVT---DDALLNEGDEVAFIPP 76 (80)
T ss_pred CcCHHHHHHHHHHhCch-hhhhccceEEE------ECCE----------EcC---CCcCcCCCCEEEEeCC
Confidence 47889999999874431 00111122333 3321 222 1346899999999984
No 218
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
Probab=25.72 E-value=79 Score=25.29 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=20.2
Q ss_pred EeeCCCEEEEecCceeecCCCcc-ccccceEEEEEEE
Q psy1177 88 VLKVGMEIEVRPGLVSKDSEGKL-TCKPIFSRIVSLF 123 (283)
Q Consensus 88 ~l~vGD~v~i~P~~~~~~~~~~~-~~~p~~~kV~sIq 123 (283)
.++.||.|.+. +|..+++.|+. ...|..+-|.++.
T Consensus 4 ~IrkGD~V~Vi-~GkdKGk~GkVl~v~~k~V~VEGvn 39 (104)
T COG0198 4 KVKKGDTVKVI-AGKDKGKEGKVLKVLPKKVVVEGVN 39 (104)
T ss_pred ceecCCEEEEE-ecCCCCcceEEEEEecCeEEEECcE
Confidence 37889999999 45555666652 2233334444443
No 219
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=24.91 E-value=2.4e+02 Score=25.03 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=35.1
Q ss_pred cCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCEEE
Q psy1177 197 QKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIA 243 (283)
Q Consensus 197 ~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr~i 243 (283)
..++.|.++.+.-..-.+.++|+.++.+.+.|-++.|++ |..+.
T Consensus 88 ~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLA---G~~L~ 131 (196)
T PRK10737 88 DELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLA---GQNLK 131 (196)
T ss_pred cCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCC---CCEEE
Confidence 357888888776544457899999999999999999999 65443
No 220
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=24.38 E-value=77 Score=27.29 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+.+++++||++|.|+++++..|...+
T Consensus 142 ~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 142 NLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46789999999999998888887644
No 221
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=24.37 E-value=1.2e+02 Score=24.67 Aligned_cols=11 Identities=9% Similarity=0.326 Sum_probs=6.9
Q ss_pred EeeCCCEEEEe
Q psy1177 88 VLKVGMEIEVR 98 (283)
Q Consensus 88 ~l~vGD~v~i~ 98 (283)
.|+.||+|.|.
T Consensus 41 ~IkkGD~V~Vi 51 (114)
T TIGR01080 41 PVRKGDKVRIM 51 (114)
T ss_pred eeecCCEEEEe
Confidence 35666666666
No 222
>KOG1980|consensus
Probab=23.93 E-value=5.8e+02 Score=27.01 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=66.9
Q ss_pred EEecCceEEEecccCCCccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEe
Q psy1177 131 FAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIG 210 (283)
Q Consensus 131 ~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~g 210 (283)
+|.+|+.|.+-+.-=|..--+.+..+..|..=+-+|--. ...+.=..+.+-. .-+.|++..+.+.+++|
T Consensus 520 ~~~~G~~V~v~l~nvP~~i~E~~~~~~~lvvfglL~hEh-KmtV~Nfvl~r~p----------~~e~Plkske~livq~G 588 (754)
T KOG1980|consen 520 EAIPGQYVRVFLRNVPVSILEAIKKQLLLVVFGLLPHEH-KMTVLNFVLQRHP----------GYEEPLKSKEELIVQCG 588 (754)
T ss_pred ccCCCceEEEEeecCcHHHHHHHhhccceeeeeccchhh-hheeeEEEEecCC----------CCCccccccceeEEEec
Confidence 457999999976411211112222233333333343322 2222222232211 12689999999999999
Q ss_pred cceeeEEEEEec---C------------CeEEEEeCCeEecccCCEEEEEeec-CCCcEEEE-EEEecCccC
Q psy1177 211 SLSTGGRVLATK---A------------DLAKISLTNPVCTEVNEKIALSRRV-EKHWSWIE-GTVSAKVLS 265 (283)
Q Consensus 211 t~~v~~~v~~~~---~------------~~~~l~L~~Pv~~~~gdr~ii~R~~-~~~~~tiG-G~v~~~~~~ 265 (283)
.....+.-..-. . ..+-..+-.|+.+-+- ++++=|.. ....+||+ |.+++..+.
T Consensus 589 ~Rrf~i~PlfSs~t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps-~vL~FK~s~~~~~~LiAtG~~l~~dpd 659 (754)
T KOG1980|consen 589 FRRFDINPLFSSHTPNDKHKYERFLPPDEAVVATVIAPITFGPS-PVLIFKKSSDGSLELIATGSLLNCDPD 659 (754)
T ss_pred cceEEeccccccCCccchhhhhhhcCccceEEEEEEeccccCCc-ceEEEEeCCCcccceeeeeeeeccCCc
Confidence 988766644331 1 1445567777776655 44443433 23457888 888766543
No 223
>COG3596 Predicted GTPase [General function prediction only]
Probab=23.49 E-value=1.6e+02 Score=27.86 Aligned_cols=32 Identities=25% Similarity=0.549 Sum_probs=27.3
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCCCCCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIPIPIR 49 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r 49 (283)
+--||+.+|+..+.|+++|+.+|.+.+|...|
T Consensus 195 ~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 195 EVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred hcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 34599999999999999999999998875544
No 224
>KOG1145|consensus
Probab=23.13 E-value=1.7e+02 Score=30.45 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=66.3
Q ss_pred HHHHHHHHhhCCCC-CCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCcccc
Q psy1177 34 EVLCEYITKKIPIP-IRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTC 112 (283)
Q Consensus 34 ~~Ll~~L~~~i~~p-~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~ 112 (283)
++|.+.|...+|.- +...-+. --|--.|+|+.--. |=-|.+=++..|.++..-.+.+.-.+.. +
T Consensus 559 eDv~~~ls~rlp~v~e~~vvGe--a~Vl~~F~i~~~rk-----r~~VAGC~V~~G~~~K~~~~rlvR~g~v-------V- 623 (683)
T KOG1145|consen 559 EDVRELLSERLPPVEEQEVVGE--AEVLATFDIREKRK-----RVPVAGCRVNNGVIKKSCKIRLVRNGKV-------V- 623 (683)
T ss_pred HHHHHHHHhhCCCceEEeeccc--eeeeeeEeeccccc-----cccccceEeecceEeecceEEEEeCCcE-------E-
Confidence 56666666655421 1111111 44556677754100 1124455788999999999998866554 1
Q ss_pred ccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceee
Q psy1177 113 KPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 113 ~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl 159 (283)
....+.|+.-+.++|.++..|.-|||.+... + .+...||.+
T Consensus 624 --~~G~l~SlKh~KedV~~vkkg~ECGl~~~d~-~---~~f~~GD~i 664 (683)
T KOG1145|consen 624 --FEGELDSLKHLKEDVTEVKKGHECGLTFDDG-N---EDFKEGDKI 664 (683)
T ss_pred --EEechhHHhhhhhhhhhhcCCCeeeeEeccC-C---cCCCcCCEE
Confidence 1257888888999999999999999977422 1 256677754
No 225
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=23.02 E-value=85 Score=25.95 Aligned_cols=41 Identities=17% Similarity=-0.023 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhcCCC--CCCcEEEeecCCCCCHHHHHHHHHh
Q psy1177 2 QVKYVTQKWRLERTVA--EGAPVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 2 ~~~~~eIr~~l~~t~~--~~~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
+.|.+-++++|..+++ +-+..+-+||-.++.+.+.++...+
T Consensus 77 ~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~ 119 (132)
T COG1908 77 KRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVE 119 (132)
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHH
Confidence 4677888999997766 5689999999999987654444443
No 226
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=22.19 E-value=1.2e+02 Score=31.39 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=17.4
Q ss_pred EEEEEEee-----EeeCCCEEEEecCcee
Q psy1177 80 AGGSILRG-----VLKVGMEIEVRPGLVS 103 (283)
Q Consensus 80 vtGtv~sG-----~l~vGD~v~i~P~~~~ 103 (283)
|.|++..| .+..|+-+.|+-|...
T Consensus 84 v~~~i~AG~~~~~~~~~g~av~I~TGa~v 112 (633)
T PRK14498 84 LGGEVHAGEAPDVEVEPGEAVEIATGAPI 112 (633)
T ss_pred EeeEEcCCCCCCcccCCCeEEEECCCCCC
Confidence 45666666 4778999999977655
No 227
>KOG1487|consensus
Probab=21.10 E-value=79 Score=29.87 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.....+|+||-++.|+|+|++-+.+++
T Consensus 254 ~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 254 TIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred eccceeecccccccchHHHHHHHhhcc
Confidence 456789999999999999999998764
No 228
>KOG0084|consensus
Probab=20.40 E-value=1.5e+02 Score=26.61 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCCCc-EEEeecCCCCCHHHHHHHHHh
Q psy1177 5 YVTQKWRLERTVAEGAP-VIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~p-iIpvSA~~g~nI~~Ll~~L~~ 42 (283)
+++.++|.... +.| +.+.||+++.|+++....|..
T Consensus 134 ~~~a~~fa~~~---~~~~f~ETSAK~~~NVe~~F~~la~ 169 (205)
T KOG0084|consen 134 TEEAQEFADEL---GIPIFLETSAKDSTNVEDAFLTLAK 169 (205)
T ss_pred HHHHHHHHHhc---CCcceeecccCCccCHHHHHHHHHH
Confidence 45666777654 345 999999999999877776665
Done!