Query psy1177
Match_columns 283
No_of_seqs 182 out of 1461
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:30:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sjy_A Translation initiation 100.0 1.5E-50 5E-55 387.6 30.6 252 2-259 148-401 (403)
2 1s0u_A EIF-2-gamma, translatio 100.0 1.3E-48 4.4E-53 374.6 31.1 253 2-260 154-407 (408)
3 1kk1_A EIF2gamma; initiation o 100.0 5.1E-47 1.7E-51 363.5 31.6 252 3-260 157-409 (410)
4 1d2e_A Elongation factor TU (E 100.0 5E-38 1.7E-42 300.4 25.6 223 4-264 141-387 (397)
5 2c78_A Elongation factor TU-A; 100.0 7.2E-38 2.5E-42 299.6 23.7 220 5-262 151-403 (405)
6 2elf_A Protein translation elo 100.0 9.7E-37 3.3E-41 290.0 20.5 214 4-259 133-369 (370)
7 1jny_A EF-1-alpha, elongation 100.0 3.8E-36 1.3E-40 290.7 24.7 217 4-263 169-428 (435)
8 1wb1_A Translation elongation 100.0 2.2E-38 7.5E-43 310.6 8.4 223 3-264 145-395 (482)
9 1f60_A Elongation factor EEF1A 100.0 5.1E-36 1.8E-40 291.9 23.8 218 4-264 168-441 (458)
10 3j2k_7 ERF3, eukaryotic polype 100.0 6.5E-35 2.2E-39 282.7 26.5 212 5-261 181-436 (439)
11 1zun_B Sulfate adenylate trans 100.0 3.6E-35 1.2E-39 283.6 23.0 212 5-260 181-433 (434)
12 3mca_A HBS1, elongation factor 100.0 3E-35 1E-39 294.9 23.2 213 4-260 338-589 (592)
13 3avx_A Elongation factor TS, e 100.0 2.5E-34 8.6E-39 303.2 25.7 223 4-264 434-678 (1289)
14 1r5b_A Eukaryotic peptide chai 100.0 1E-34 3.4E-39 283.4 17.4 212 4-261 206-464 (467)
15 3p26_A Elongation factor 1 alp 100.0 2.8E-33 9.5E-38 273.9 25.7 219 7-264 197-477 (483)
16 3e1y_E Eukaryotic peptide chai 100.0 6.4E-34 2.2E-38 250.4 17.1 169 51-263 3-200 (204)
17 3izq_1 HBS1P, elongation facto 100.0 4E-33 1.4E-37 280.5 22.5 217 6-261 330-608 (611)
18 3izy_P Translation initiation 99.5 3.8E-14 1.3E-18 140.6 6.5 119 18-165 140-261 (537)
19 2ywe_A GTP-binding protein LEP 99.4 2E-12 6.9E-17 129.7 16.2 128 14-165 152-282 (600)
20 3cb4_D GTP-binding protein LEP 99.3 1.9E-11 6.6E-16 122.6 16.0 127 15-165 151-280 (599)
21 1g7s_A Translation initiation 99.3 1.7E-11 5.6E-16 123.0 10.7 120 18-163 190-328 (594)
22 1zo1_I IF2, translation initia 99.2 9.6E-12 3.3E-16 122.4 8.7 117 19-164 140-259 (501)
23 2h5e_A Peptide chain release f 99.2 9.8E-12 3.4E-16 123.0 8.6 122 18-164 250-384 (529)
24 1xe1_A Hypothetical protein PF 99.2 9.2E-11 3.1E-15 93.7 9.2 64 77-160 48-112 (116)
25 2dy1_A Elongation factor G; tr 99.2 9.2E-11 3.1E-15 118.9 10.9 116 19-164 247-367 (665)
26 2rdo_7 EF-G, elongation factor 99.1 8.8E-10 3E-14 112.4 14.3 118 19-164 261-402 (704)
27 3tr5_A RF-3, peptide chain rel 99.0 7.7E-10 2.6E-14 109.4 11.6 119 19-162 250-381 (528)
28 1dar_A EF-G, elongation factor 99.0 2E-09 6.8E-14 109.6 13.5 117 20-164 256-394 (691)
29 2xex_A Elongation factor G; GT 98.9 6.8E-09 2.3E-13 105.7 12.5 117 19-163 253-393 (693)
30 3vqt_A RF-3, peptide chain rel 98.5 3.6E-07 1.2E-11 90.7 11.2 121 19-164 268-401 (548)
31 4fn5_A EF-G 1, elongation fact 98.3 2.3E-06 7.9E-11 87.1 10.9 119 18-164 263-405 (709)
32 3j25_A Tetracycline resistance 98.1 1.9E-07 6.5E-12 94.1 -2.8 100 19-140 212-315 (638)
33 1zo1_I IF2, translation initia 97.0 0.0034 1.2E-07 61.6 11.1 80 57-159 411-490 (501)
34 1n0u_A EF-2, elongation factor 96.6 0.016 5.3E-07 60.2 12.7 96 33-140 331-456 (842)
35 1d1n_A Initiation factor 2; be 96.6 0.0027 9.2E-08 49.2 5.0 80 57-159 9-88 (99)
36 2crv_A IF-2MT, translation ini 96.4 0.011 3.9E-07 47.1 7.8 83 57-159 13-96 (120)
37 3izy_P Translation initiation 95.9 0.037 1.3E-06 54.6 10.3 106 34-159 428-533 (537)
38 1g7s_A Translation initiation 95.5 0.091 3.1E-06 52.4 11.6 85 53-161 462-548 (594)
39 4he6_A Peptidase family U32; u 94.4 0.033 1.1E-06 41.6 3.7 58 85-155 26-86 (89)
40 2hjg_A GTP-binding protein ENG 92.9 0.085 2.9E-06 50.1 4.5 51 18-68 321-393 (436)
41 4dcu_A GTP-binding protein ENG 91.6 0.19 6.6E-06 47.9 5.3 40 4-43 325-366 (456)
42 2bov_A RAla, RAS-related prote 90.3 0.2 6.9E-06 41.0 3.6 37 5-44 139-175 (206)
43 1vg8_A RAS-related protein RAB 89.9 0.3 1E-05 40.1 4.3 38 5-44 136-173 (207)
44 3iev_A GTP-binding protein ERA 89.8 0.31 1.1E-05 44.0 4.7 28 18-45 154-181 (308)
45 4dsu_A GTPase KRAS, isoform 2B 89.7 0.25 8.6E-06 39.6 3.7 37 5-44 128-164 (189)
46 3tkl_A RAS-related protein RAB 89.5 0.34 1.2E-05 39.2 4.4 38 5-45 141-178 (196)
47 2j0v_A RAC-like GTP-binding pr 89.5 0.23 7.8E-06 41.2 3.3 39 5-45 141-179 (212)
48 2f7s_A C25KG, RAS-related prot 89.3 0.34 1.2E-05 40.2 4.4 37 5-44 161-197 (217)
49 1x3s_A RAS-related protein RAB 89.3 0.33 1.1E-05 39.2 4.1 38 5-45 140-177 (195)
50 2bcg_Y Protein YP2, GTP-bindin 89.3 0.35 1.2E-05 39.9 4.3 37 5-44 133-169 (206)
51 4dkx_A RAS-related protein RAB 89.1 0.35 1.2E-05 41.5 4.3 38 5-45 138-175 (216)
52 2gf0_A GTP-binding protein DI- 88.8 0.45 1.5E-05 38.6 4.6 38 5-45 133-170 (199)
53 1zbd_A Rabphilin-3A; G protein 88.2 0.28 9.6E-06 40.2 3.0 37 5-44 133-169 (203)
54 3cph_A RAS-related protein SEC 88.2 0.3 1E-05 40.2 3.2 37 5-44 144-180 (213)
55 3p32_A Probable GTPase RV1496/ 88.0 0.48 1.6E-05 43.6 4.7 27 19-45 257-283 (355)
56 2qu8_A Putative nucleolar GTP- 87.8 0.47 1.6E-05 40.1 4.2 37 7-44 167-203 (228)
57 3cpj_B GTP-binding protein YPT 87.4 0.48 1.6E-05 39.8 4.0 38 5-45 138-175 (223)
58 2yc2_C IFT27, small RAB-relate 87.3 0.32 1.1E-05 39.7 2.8 37 5-44 153-190 (208)
59 1ega_A Protein (GTP-binding pr 85.4 1.1 3.8E-05 40.2 5.6 38 6-45 137-174 (301)
60 4djt_A GTP-binding nuclear pro 84.7 0.64 2.2E-05 38.5 3.4 36 6-44 138-173 (218)
61 3iby_A Ferrous iron transport 84.1 0.56 1.9E-05 41.2 2.9 25 19-43 140-164 (256)
62 2p67_A LAO/AO transport system 83.8 1.2 4.1E-05 40.7 5.1 26 19-44 234-259 (341)
63 3b1v_A Ferrous iron uptake tra 83.5 0.76 2.6E-05 40.8 3.6 26 19-44 137-162 (272)
64 2cjw_A GTP-binding protein GEM 83.5 0.59 2E-05 38.5 2.7 26 19-44 145-170 (192)
65 3i8s_A Ferrous iron transport 83.4 0.43 1.5E-05 42.2 1.9 27 19-45 142-168 (274)
66 2wjg_A FEOB, ferrous iron tran 82.2 0.69 2.4E-05 37.1 2.6 35 8-45 134-168 (188)
67 1wf3_A GTP-binding protein; GT 82.2 0.72 2.4E-05 41.6 2.9 35 10-45 138-172 (301)
68 3a1s_A Iron(II) transport prot 82.0 0.91 3.1E-05 39.8 3.4 26 19-44 140-165 (258)
69 1xzp_A Probable tRNA modificat 81.9 1.4 4.8E-05 42.6 5.0 35 6-44 369-403 (482)
70 3h2y_A GTPase family protein; 81.1 1.9 6.4E-05 40.0 5.4 35 9-43 123-157 (368)
71 1mky_A Probable GTP-binding pr 80.1 1.4 4.8E-05 41.6 4.2 28 17-44 326-353 (439)
72 3ec1_A YQEH GTPase; atnos1, at 79.9 2.4 8.1E-05 39.3 5.7 37 8-44 124-160 (369)
73 2e87_A Hypothetical protein PH 79.8 1.4 4.8E-05 40.3 4.1 36 6-44 299-334 (357)
74 2der_A TRNA-specific 2-thiouri 79.2 6.7 0.00023 36.6 8.6 112 130-260 248-373 (380)
75 1u0l_A Probable GTPase ENGC; p 77.7 1.8 6.2E-05 38.7 4.0 36 6-42 134-169 (301)
76 2www_A Methylmalonic aciduria 77.6 2.9 9.8E-05 38.4 5.4 26 19-44 252-277 (349)
77 2yv5_A YJEQ protein; hydrolase 77.6 1.8 6.3E-05 38.8 4.0 35 5-42 131-165 (302)
78 1udx_A The GTP-binding protein 77.1 2.3 7.9E-05 40.3 4.7 37 5-44 287-323 (416)
79 3k53_A Ferrous iron transport 76.4 1.5 5E-05 38.4 3.0 26 19-44 139-164 (271)
80 3oes_A GTPase rhebl1; small GT 75.9 0.71 2.4E-05 37.9 0.7 29 19-47 160-188 (201)
81 3gee_A MNME, tRNA modification 75.2 1.6 5.4E-05 42.2 3.0 26 20-45 372-397 (476)
82 3gj0_A GTP-binding nuclear pro 74.5 1.2 3.9E-05 37.2 1.7 26 19-44 148-173 (221)
83 2hma_A Probable tRNA (5-methyl 73.8 14 0.00046 34.4 9.0 109 132-260 242-364 (376)
84 3qq5_A Small GTP-binding prote 70.4 1.1 3.7E-05 42.7 0.6 29 19-47 169-197 (423)
85 2qm8_A GTPase/ATPase; G protei 70.3 6.4 0.00022 35.8 5.8 26 19-44 234-259 (337)
86 2hjg_A GTP-binding protein ENG 67.9 4.4 0.00015 38.1 4.3 25 21-45 140-164 (436)
87 2f9l_A RAB11B, member RAS onco 67.8 4.9 0.00017 32.6 4.1 37 5-44 130-166 (199)
88 3geh_A MNME, tRNA modification 67.6 3.5 0.00012 39.5 3.5 28 18-45 356-383 (462)
89 3dpu_A RAB family protein; roc 67.6 2.4 8.2E-05 41.0 2.4 38 5-45 170-207 (535)
90 1mky_A Probable GTP-binding pr 65.6 3.2 0.00011 39.1 2.8 25 21-45 141-165 (439)
91 3r7w_A Gtpase1, GTP-binding pr 61.6 9.3 0.00032 34.0 5.0 39 4-43 140-178 (307)
92 1puj_A YLQF, conserved hypothe 59.8 9.6 0.00033 33.8 4.7 35 7-44 70-104 (282)
93 3t5d_A Septin-7; GTP-binding p 58.1 3.7 0.00013 35.9 1.6 36 7-45 168-203 (274)
94 1tq4_A IIGP1, interferon-induc 52.5 20 0.00068 33.8 5.8 42 5-46 206-253 (413)
95 2qnr_A Septin-2, protein NEDD5 48.3 4 0.00014 36.5 0.2 36 5-44 177-212 (301)
96 2aka_B Dynamin-1; fusion prote 46.1 3.3 0.00011 36.0 -0.7 23 20-42 227-249 (299)
97 4dcu_A GTP-binding protein ENG 44.1 20 0.00068 33.7 4.4 25 21-45 160-184 (456)
98 2xtp_A GTPase IMAP family memb 37.6 2.8 9.7E-05 35.9 -2.5 23 23-45 185-207 (260)
99 3cnl_A YLQF, putative uncharac 34.9 23 0.00078 30.9 3.0 33 7-43 66-98 (262)
100 2j69_A Bacterial dynamin-like 28.7 28 0.00096 34.9 2.8 27 18-44 283-323 (695)
101 2rcn_A Probable GTPase ENGC; Y 26.5 44 0.0015 30.8 3.5 22 19-40 192-213 (358)
102 1wxq_A GTP-binding protein; st 23.9 5.6 0.00019 37.2 -3.3 26 19-44 243-269 (397)
103 3zvr_A Dynamin-1; hydrolase, D 23.6 9.3 0.00032 39.2 -1.9 24 19-42 251-274 (772)
104 2qag_A Septin-2, protein NEDD5 22.0 33 0.0011 31.3 1.7 37 6-45 197-236 (361)
105 1oru_A YUAD protein; structura 20.9 94 0.0032 25.8 4.2 24 75-98 159-182 (195)
No 1
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.5e-50 Score=387.59 Aligned_cols=252 Identities=39% Similarity=0.662 Sum_probs=235.2
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEE
Q psy1177 2 QVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81 (283)
Q Consensus 2 ~~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvt 81 (283)
++.++++++++++++.+++|++|+||++|+||++|+++|.+.++.|.++.+.||+|+|+|+|+|+|||+++++++|+|++
T Consensus 148 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~ 227 (403)
T 3sjy_A 148 LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIG 227 (403)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEE
Confidence 35678899999999999999999999999999999999998899898888999999999999999999999999999999
Q ss_pred EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeecc
Q psy1177 82 GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 82 Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
|+|.+|.+++||+|+++|++... .+|++.|.|+.++|++|+++++++++|.|||+|+++|++|++++++|+.+||||++
T Consensus 228 g~v~~G~~~~gd~v~~~p~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~ 306 (403)
T 3sjy_A 228 GSIIQGLFKVDQEIKVLPGLRVE-KQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITL 306 (403)
T ss_dssp EEEEESCEETTCEEEEEEEEEEE-ETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEE
T ss_pred EEEEeCEEecCCEEEEeCCcccc-cccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEeC
Confidence 99999999999999999987642 57778899999999999999999999999999999999888999999999999999
Q ss_pred CCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCC-
Q psy1177 162 VGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNE- 240 (283)
Q Consensus 162 ~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gd- 240 (283)
|+++|++++.|+|+++||++.+|+++ ..+..||++|++++||+||+++.|+|..++++.++|+|++|+|+..||
T Consensus 307 ~~~~~~~~~~~~a~~~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~~~~~~~l~~p~~~~~g~~ 381 (403)
T 3sjy_A 307 ADAEVPVLWNIRIKYNLLERVVGAKE-----MLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNI 381 (403)
T ss_dssp TTCCCCEEEEEEEEEEECSBCTTCSS-----CCBCCCCCTTCEEEEEETTEEEEEEEEEECSSEEEEEEEEEEECCSSSC
T ss_pred CCCCCcceeEEEEEEEEEeccccccc-----cccCCCCCCCCEEEEEECccEEEEEEEEecCceEEEEeCCcEeeccCCE
Confidence 99999988899999999998776652 233689999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCcEEEE-EEE
Q psy1177 241 KIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 241 r~ii~R~~~~~~~tiG-G~v 259 (283)
||+|+|+.++.||+|| |.|
T Consensus 382 r~~i~r~~~~~~r~~g~g~i 401 (403)
T 3sjy_A 382 RTVISRQIAGRWRMIGWGLV 401 (403)
T ss_dssp EEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeCCcEEEEEEEEE
Confidence 9999998999999999 987
No 2
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.3e-48 Score=374.63 Aligned_cols=253 Identities=46% Similarity=0.774 Sum_probs=227.0
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEE
Q psy1177 2 QVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81 (283)
Q Consensus 2 ~~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvt 81 (283)
++.+++++++++++...++|++|+||++|+||++|+++|.+.++.|.++.++||||||+|+|+|+|||+++++++|+|++
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~ 233 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLG 233 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEE
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEE
Confidence 35789999999998888999999999999999999999998899998989999999999999999999999999999999
Q ss_pred EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeecc
Q psy1177 82 GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 82 Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
|+|.+|.+++||+|+++|++.. ..+|++.|.|..++|++||+|++++++|.|||+|++++++|++++++|+.+||||++
T Consensus 234 g~v~~G~l~~gd~v~~~p~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~ 312 (408)
T 1s0u_A 234 GAIIQGVFKVGDEIEIRPGIKV-TEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGL 312 (408)
T ss_dssp EEEEESCEETTCEEEEEEEEEE-CCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEES
T ss_pred EEEEECeEecCCEEEEcCCccc-ccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEEC
Confidence 9999999999999999997654 346777888999999999999999999999999999998888999999999999999
Q ss_pred CCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCE
Q psy1177 162 VGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEK 241 (283)
Q Consensus 162 ~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr 241 (283)
|+++|+++..|+|+++||++.+|++.+ .+..||++|+.++||+||+++.|+|..++++.++|+|++|+|++.|+|
T Consensus 313 ~~~~~~~~~~~~a~~~~l~~~~g~~~~-----~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~ 387 (408)
T 1s0u_A 313 PGTLPPIREKITIRANLLDRVVGTKEE-----LKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPICAEIGDR 387 (408)
T ss_dssp TTCSCCEEEEEEEEEEECCCCSSCSST-----TCCCCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECCTTCE
T ss_pred CCCCCceeEEEEEEEEEEecccccccc-----ccccCCCCCCEEEEEEcCCEEEEEEEEecCCEEEEEECCcEEecCCCE
Confidence 999999888999999999987665431 225799999999999999999999999998999999999999999999
Q ss_pred EEEEeecCCCcEEEE-EEEe
Q psy1177 242 IALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 242 ~ii~R~~~~~~~tiG-G~v~ 260 (283)
|++|++....||||| |.|.
T Consensus 388 ~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 388 VAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp EEEEEECSSSEEEEEEEEEC
T ss_pred EEEEEecCCCeEEEEEEEEc
Confidence 999887666899999 9873
No 3
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=5.1e-47 Score=363.53 Aligned_cols=252 Identities=44% Similarity=0.730 Sum_probs=226.1
Q ss_pred hHHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEE
Q psy1177 3 VKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGG 82 (283)
Q Consensus 3 ~~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtG 82 (283)
+.+++++++++++...++|++++||++|+||++|+++|.+.++.|.++.+.||+|+|+|+|+|+|||+++++++|+|++|
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g 236 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDG 236 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEE
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEE
Confidence 57889999999888889999999999999999999999988999988889999999999999999999999999999999
Q ss_pred EEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceeeccC
Q psy1177 83 SILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAV 162 (283)
Q Consensus 83 tv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~ 162 (283)
+|.+|.|++||+|.++|++.. ..+|+..|.|..++|++||++++++++|.|||+|++++++|++++++|+.+||||++|
T Consensus 237 ~v~~G~l~~gd~v~~~p~~~~-~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~ 315 (410)
T 1kk1_A 237 SIVQGKLKVGDEIEIRPGVPY-EEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKP 315 (410)
T ss_dssp EEEESCEETTCEEEEEEEEEE-EETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECT
T ss_pred EEEeCeEeeCCEEEECCCCcc-ccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecC
Confidence 999999999999999997653 2366677888889999999999999999999999999988888999999999999999
Q ss_pred CCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecCCeEEEEeCCeEecccCCEE
Q psy1177 163 GALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKI 242 (283)
Q Consensus 163 g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~~~~~l~L~~Pv~~~~gdr~ 242 (283)
+++|+++..|+|+++||+..+|++.+ .+..||++|+.++||+||+++.|+|..++++.++|+|++|+|++.|+||
T Consensus 316 ~~~~~~~~~~~a~~~~l~~~~g~~~~-----~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~~~l~~~~p~~~~~~~~~ 390 (410)
T 1kk1_A 316 GKLPPVWDSLRLEVHLLERVVGTEQE-----LKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRV 390 (410)
T ss_dssp TCSCCEEEEEEEEEEECCCCC--CCC-----CSCCCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECCTTCEE
T ss_pred CCCCceeEEEEEEEEEEecccccccc-----cccccCCCCCEEEEEEcCCEEeEEEEEecCCEEEEEeCCcEEecCCCEE
Confidence 99999888999999999977665431 2247999999999999999999999999989999999999999999999
Q ss_pred EEEeecCCCcEEEE-EEEe
Q psy1177 243 ALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 243 ii~R~~~~~~~tiG-G~v~ 260 (283)
++|++....||||| |.|.
T Consensus 391 ~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 391 AISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEecCCCcEEEEEEEEc
Confidence 99887666799999 9884
No 4
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=5e-38 Score=300.35 Aligned_cols=223 Identities=20% Similarity=0.235 Sum_probs=194.8
Q ss_pred HHHHHHHHHhcCCCC--CCcEEEeecCCCCC----------HHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCc
Q psy1177 4 KYVTQKWRLERTVAE--GAPVIPISAQLKYN----------IEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCE 71 (283)
Q Consensus 4 ~~~eIr~~l~~t~~~--~~piIpvSA~~g~n----------I~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~ 71 (283)
..++++++++.+++. ++|++|+||++|+| |++|+++|+++++.|.++.++||+|||+++|+++|
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~---- 216 (397)
T 1d2e_A 141 VELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPG---- 216 (397)
T ss_dssp HHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETT----
T ss_pred HHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCC----
Confidence 346778899877764 78999999999876 99999999998999999899999999999999965
Q ss_pred ccCCcceEEEEEEEeeEeeCCCEEEEecCc--eeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcc
Q psy1177 72 VDDLKGGVAGGSILRGVLKVGMEIEVRPGL--VSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLC 149 (283)
Q Consensus 72 ~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~--~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~ 149 (283)
+|+|++|+|.+|.|++||+|.++|.+ .. ++|++|++|++++++|.|||+|++++ .+++
T Consensus 217 ----~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~-------------~~V~~i~~~~~~~~~a~aG~~v~~~l---~~i~ 276 (397)
T 1d2e_A 217 ----RGTVVTGTLERGILKKGDECEFLGHSKNIR-------------TVVTGIEMFHKSLDRAEAGDNLGALV---RGLK 276 (397)
T ss_dssp ----TEEEEEEECCBSEEETTCEEEEEETTEEEE-------------EEEEEEEETTEEESEEETTCEEEEEE---SSCC
T ss_pred ----ceEEEEEEEeeceEeCCCEEEEeCCCCCeE-------------EEEEEEEECCcccCEecCCCceEEEe---cccc
Confidence 58999999999999999999999975 44 89999999999999999999999988 4677
Q ss_pred ccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec-------
Q psy1177 150 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK------- 222 (283)
Q Consensus 150 r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~------- 222 (283)
+.|+.|||+|+.++.+++ .+.|+|+++||+...|++ ..||.+|+.+++|+||+++.|+|...+
T Consensus 277 ~~~i~~G~~l~~~~~~~~-~~~f~a~v~~l~~~~~~~---------~~~~~~g~~~~~~~~t~~~~~~i~l~~~~~~l~~ 346 (397)
T 1d2e_A 277 REDLRRGLVMAKPGSIQP-HQKVEAQVYILTKEEGGR---------HKPFVSHFMPVMFSLTWDMACRIILPPGKELAMP 346 (397)
T ss_dssp GGGCCTTCEEESTTSCCC-EEEEEEEEEECCGGGTSC---------SSCBCTTCCCEEEETTEEEEEEEECCSSCCCBCT
T ss_pred hhccCceeEEeCCCCCCc-ccEEEEEEEEeccccccC---------ccccCCCCEEEEEEecCEEEEEEEEcCCcccccC
Confidence 889999999999997655 579999999998654443 569999999999999999999998432
Q ss_pred CC--eEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEecCcc
Q psy1177 223 AD--LAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSAKVL 264 (283)
Q Consensus 223 ~~--~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~~~~ 264 (283)
++ .|+|+|.+|+|++.|+||+|| . .++|+| |+|.....
T Consensus 347 ~~~~~v~~~~~~p~~~~~~~r~~lr-~---~~~ti~~G~i~~~~~ 387 (397)
T 1d2e_A 347 GEDLKLTLILRQPMILEKGQRFTLR-D---GNRTIGTGLVTDTPA 387 (397)
T ss_dssp TCEEEEEEEEEEEECCCTTCEEEEE-E---TTEEEEEEEEEECCC
T ss_pred CCEEEEEEEECCeEEEccCCeEEEE-e---CCeEEEEEEEeeccc
Confidence 12 789999999999999999995 3 369999 99977653
No 5
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=7.2e-38 Score=299.57 Aligned_cols=220 Identities=25% Similarity=0.261 Sum_probs=192.9
Q ss_pred HHHHHHHHhcCCC--CCCcEEEeecCCCCC------------------HHHHHHHHHhhCCCCCCCCCCCceEEEEEEee
Q psy1177 5 YVTQKWRLERTVA--EGAPVIPISAQLKYN------------------IEVLCEYITKKIPIPIRDFTSSPRLIVIRSFD 64 (283)
Q Consensus 5 ~~eIr~~l~~t~~--~~~piIpvSA~~g~n------------------I~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~ 64 (283)
.++++++++.+++ +++|++++||++|+| |++|+++|++++|.|.++.++||+|||+++|.
T Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~ 230 (405)
T 2c78_A 151 EMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230 (405)
T ss_dssp HHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEE
T ss_pred HHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEE
Confidence 4567788887776 468999999999988 89999999998999999889999999999999
Q ss_pred cCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCc---eeecCCCccccccceEEEEEEEeCCceecEEecCceEEEe
Q psy1177 65 VNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGL---VSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVG 141 (283)
Q Consensus 65 V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~---~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~ 141 (283)
++| +|+|++|+|.+|+|++||+|.++|.+ .. ++|++|++|++++++|.|||+|+++
T Consensus 231 ~~~--------~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~-------------~~V~~i~~~~~~~~~a~aG~~v~~~ 289 (405)
T 2c78_A 231 ITG--------RGTVATGRIERGKVKVGDEVEIVGLAPETRK-------------TVVTGVEMHRKTLQEGIAGDNVGVL 289 (405)
T ss_dssp ETT--------TEEEEEEECCBSEEETTCEEEEESSSSSCEE-------------EEEEEEEETTEEESEEETTCEEEEE
T ss_pred cCC--------CceEEEEEEecccccCCCEEEEeCCCCCeee-------------EEEEEEEECCcccCEEcCCCEEEEE
Confidence 965 58999999999999999999999987 34 9999999999999999999999998
Q ss_pred cccCCCccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEe
Q psy1177 142 TKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLAT 221 (283)
Q Consensus 142 l~ld~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~ 221 (283)
+ .++++.|+.|||+|+.++.+ ...+.|+|+++||+...|++ ..||.+|+.+++|+||+++.|+|...
T Consensus 290 l---~g~~~~~i~~G~~l~~~~~~-~~~~~f~a~v~~l~~~~~~~---------~~~~~~g~~~~~~~~t~~~~~~i~~~ 356 (405)
T 2c78_A 290 L---RGVSREEVERGQVLAKPGSI-TPHTKFEASVYVLKKEEGGR---------HTGFFSGYRPQFYFRTTDVTGVVQLP 356 (405)
T ss_dssp E---SSCCTTTCCTTCEEESTTSS-EEEEEEEEEEEECCGGGTSC---------SSCBCTTCCCEEEETTEEEEEEEECC
T ss_pred E---CCCcHhhcCceEEEEcCCCC-ceeEEEEEEEEEecccCCCc---------cccccCCceEEEEEcccEEEEEEEEc
Confidence 8 46778899999999999975 44679999999998654433 46899999999999999999999943
Q ss_pred cC---------CeEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEecC
Q psy1177 222 KA---------DLAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSAK 262 (283)
Q Consensus 222 ~~---------~~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~~ 262 (283)
++ ..|+|+|.+|+|++.|+||+|| . .++|+| |+|.+.
T Consensus 357 ~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~lr-~---~~~ti~~G~i~~~ 403 (405)
T 2c78_A 357 PGVEMVMPGDNVTFTVELIKPVALEEGLRFAIR-E---GGRTVGAGVVTKI 403 (405)
T ss_dssp TTCCCBCTTCEEEEEEEEEEEEEECTTCEEEEE-E---TTEEEEEEEEEEE
T ss_pred cCccccCCCCEEEEEEEECceEEEccCCEEEEE-c---CCeEEEEEEEEec
Confidence 21 2789999999999999999995 3 369999 998653
No 6
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=9.7e-37 Score=289.96 Aligned_cols=214 Identities=16% Similarity=0.151 Sum_probs=184.8
Q ss_pred HHHHHHHHHhcCCCCCCcEEE--eecCC---CCCHHHHHHHHHhhCCCC---CCC-CCCCceEEEEEEeecCCCCCcccC
Q psy1177 4 KYVTQKWRLERTVAEGAPVIP--ISAQL---KYNIEVLCEYITKKIPIP---IRD-FTSSPRLIVIRSFDVNKPGCEVDD 74 (283)
Q Consensus 4 ~~~eIr~~l~~t~~~~~piIp--vSA~~---g~nI~~Ll~~L~~~i~~p---~r~-~~~~~r~~IdR~F~V~g~G~~~~~ 74 (283)
..++++++++.+.++++|++| +||++ |+||++|++.|.+.++.+ .+. ...|+|++|+++|.+++
T Consensus 133 ~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~------- 205 (370)
T 2elf_A 133 LKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTG------- 205 (370)
T ss_dssp HHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC--------
T ss_pred HHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCC-------
Confidence 457888999888888999999 99999 999999999999866543 112 44567888999999965
Q ss_pred CcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccc
Q psy1177 75 LKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRL 154 (283)
Q Consensus 75 ~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~ 154 (283)
+|+|++|+|.+|.+++||+|.++|.+.. ++|++|+++++++++|.|||+|++++ .+++++|+.
T Consensus 206 -~G~v~~g~v~~G~l~~gd~v~~~p~~~~-------------~~V~~i~~~~~~v~~a~aGd~v~i~l---~gv~~~~i~ 268 (370)
T 2elf_A 206 -KGCVVLGVVKQGISKDKDKTKIFPLDRD-------------IEIRSIQSHDVDIDSAPAGTRVGMRL---KNVQAKDIE 268 (370)
T ss_dssp ---CEEEEEEEESEEETTCEEEEETTTEE-------------EEEEEEEETTEEESEEETTCEEEEEE---ESCCGGGCC
T ss_pred -CceEEEEEEECCEEeeCCEEEECCCCcE-------------EEEeEEEECCCCccEEcCCCcceEEE---eccCHHHcC
Confidence 4799999999999999999999999887 99999999999999999999999998 467778999
Q ss_pred cceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEe--cCC--------
Q psy1177 155 VGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLAT--KAD-------- 224 (283)
Q Consensus 155 rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~--~~~-------- 224 (283)
+||+|+. +. ..++.|+|+++||+. ..||++|+.+++++||+++.|+|..+ +.+
T Consensus 269 ~Gdvl~~-~~--~~~~~f~a~v~~l~~--------------~~~i~~g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g 331 (370)
T 2elf_A 269 RGFIISD-KE--IVTTDYTLECTVSKF--------------TKKIEPASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPG 331 (370)
T ss_dssp TTCEEES-CC--EEEEEEEEEEEECTT--------------SCCBCTTCEEEEEETTEEEEEEEEEEEETTEEESCBCTT
T ss_pred CceEEEC-CC--ceeEEEEEEEEEECC--------------CCCCCCCCEEEEEEcCCEEEEEEEEEEeCCCcceeecCC
Confidence 9999999 65 556799999999973 47899999999999999999999988 322
Q ss_pred ---eEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEE
Q psy1177 225 ---LAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTV 259 (283)
Q Consensus 225 ---~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v 259 (283)
.|+|+|++|+|++.|+||+|| +.+.+|+|+| |.+
T Consensus 332 ~~~~v~l~~~~pi~~~~~~rfilr-~~~~~~~tig~G~~ 369 (370)
T 2elf_A 332 STCVLELSGNKKLAYSKQDRFLLA-NLDLTQRFAAYGFS 369 (370)
T ss_dssp CEEEEEEEEEEEEEECTTSCEEEE-CTTSSSCEEEEEEE
T ss_pred CEEEEEEEECcEEEEeCCCEEEEE-ECCCCCEEEEEEEe
Confidence 899999999999999999995 4444589999 875
No 7
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=3.8e-36 Score=290.66 Aligned_cols=217 Identities=20% Similarity=0.270 Sum_probs=190.8
Q ss_pred HHHHHHHHHhcCCCC--CCcEEEeecCCCCCHH------------HHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCC
Q psy1177 4 KYVTQKWRLERTVAE--GAPVIPISAQLKYNIE------------VLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPG 69 (283)
Q Consensus 4 ~~~eIr~~l~~t~~~--~~piIpvSA~~g~nI~------------~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G 69 (283)
..++++++++..++. ++|++|+||++|+||+ +|+++|+. ++.|.++.++||||||+++|.++|
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~~~~~~~~~v~~v~~~~~-- 245 (435)
T 1jny_A 169 IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKPVDKPLRIPIQDVYSISG-- 245 (435)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCGGGSCCBEEEEEEEEETT--
T ss_pred HHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCCCCCCeEEEEEEEEEeCC--
Confidence 356677888877664 5999999999999996 79999986 777887778999999999999965
Q ss_pred CcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcc
Q psy1177 70 CEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLC 149 (283)
Q Consensus 70 ~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~ 149 (283)
.|+|++|+|.+|++++||+|.++|++.. ++|++|++|++++++|.|||+|++++ .+++
T Consensus 246 ------~G~v~~g~v~~G~l~~gd~v~~~p~~~~-------------~~V~~i~~~~~~~~~a~aG~~v~~~l---~g~~ 303 (435)
T 1jny_A 246 ------VGTVPVGRVESGVLKVGDKIVFMPAGKV-------------GEVRSIETHHTKMDKAEPGDNIGFNV---RGVE 303 (435)
T ss_dssp ------TEEEEEEECCBSCEETTCEEEEETTTEE-------------EEEEEEEETTEEESEECTTCEEEEEE---ESSC
T ss_pred ------CcEEEEEEEecCeEEcCCEEEECCceeE-------------EEEEEEEECCcEEeEEcCCCEEEEEE---ecCC
Confidence 4799999999999999999999999887 99999999999999999999999988 4566
Q ss_pred ccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec-------
Q psy1177 150 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK------- 222 (283)
Q Consensus 150 r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~------- 222 (283)
..|+.|||+|+.++..+.....|+|+++||+. ..||++|+.++||+||+++.|+|..+.
T Consensus 304 ~~~i~~Gd~l~~~~~~~~~~~~f~a~v~~l~~--------------~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~ 369 (435)
T 1jny_A 304 KKDIKRGDVVGHPNNPPTVADEFTARIIVVWH--------------PTALANGYTPVLHVHTASVACRVSELVSKLDPRT 369 (435)
T ss_dssp GGGCCTTCEEECTTSCCCEESEEEEEEEECCC--------------SSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTT
T ss_pred HHHcCCccEecCCCCCceEeEEEEEEEEEECC--------------CCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCc
Confidence 78999999999998777778899999999973 478999999999999999999998762
Q ss_pred -------------CC--eEEEEeCCeEecccCC------EEEEEeecCCCcEEEE-EEEecCc
Q psy1177 223 -------------AD--LAKISLTNPVCTEVNE------KIALSRRVEKHWSWIE-GTVSAKV 263 (283)
Q Consensus 223 -------------~~--~~~l~L~~Pv~~~~gd------r~ii~R~~~~~~~tiG-G~v~~~~ 263 (283)
++ .|+|+|.+|+|++.++ ||+|| +. ++|+| |+|++..
T Consensus 370 ~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr-~~---~~tv~~G~i~~~~ 428 (435)
T 1jny_A 370 GQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMR-DM---GKTVGVGIIVDVK 428 (435)
T ss_dssp CSEEEESCSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEE-ET---TEEEEEEEEEEEE
T ss_pred ccccccCccccCCCCEEEEEEEECceEEEecCCcCCcCccEEEE-EC---CeEEEEEEEeeec
Confidence 12 7999999999999999 99995 42 48999 9997654
No 8
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=2.2e-38 Score=310.58 Aligned_cols=223 Identities=20% Similarity=0.269 Sum_probs=196.2
Q ss_pred hHHHHHHHHHhcC-CCCCCcEEEeecCCCCCHHHHHHHHHhhCCCC--CCCCCCCceEEEEEEeecCCCCCcccCCcceE
Q psy1177 3 VKYVTQKWRLERT-VAEGAPVIPISAQLKYNIEVLCEYITKKIPIP--IRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGV 79 (283)
Q Consensus 3 ~~~~eIr~~l~~t-~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p--~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtV 79 (283)
+..++++++++.+ .+.++|++|+||++|+||++|+++|.+.++.| .++.++||+||||++|+++|. |||
T Consensus 145 ~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~--------G~v 216 (482)
T 1wb1_A 145 RTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGA--------GTV 216 (482)
T ss_dssp HHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSC--------CCE
T ss_pred HHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcCccccccccccccccceeEEEecCC--------ceE
Confidence 3466777888887 78889999999999999999999999877666 777888999999999999775 799
Q ss_pred EEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceee
Q psy1177 80 AGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 80 vtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl 159 (283)
++|+|.+|.+++||+|+++|++.. ++|++|++|++++++|.|||+|++++ .++++.++.|||+|
T Consensus 217 ~~g~v~~G~l~~gd~v~~~p~~~~-------------~~V~~i~~~~~~v~~a~~G~~v~~~l---~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 217 VTGTINKGIVKVGDELKVLPINMS-------------TKVRSIQYFKESVMEAKAGDRVGMAI---QGVDAKQIYRGXIL 280 (482)
T ss_dssp ECCCCCBSCCCSSEEECCTTTCCC-------------EEECCBCGGGSCBCCCCSSCCCCEEC---SSCCSSCCCSSCBC
T ss_pred EEEEEEEeEEeeCCEEEECCCCcE-------------EEEeEEEECCeEeeEecCCCEEEEEe---cCCCHhhccccceE
Confidence 999999999999999999999877 99999999999999999999999988 45777799999999
Q ss_pred -ccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec----------------
Q psy1177 160 -GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK---------------- 222 (283)
Q Consensus 160 -~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~---------------- 222 (283)
+.++.++++ +.|+|+++||+.. ..||++|+++++++||+++.|+|..++
T Consensus 281 ~~~~~~~~~~-~~~~a~v~~l~~~-------------~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l 346 (482)
T 1wb1_A 281 TSKDTKLQTV-DKIVAKIKISDIF-------------KYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEV 346 (482)
T ss_dssp CCTTCCCCCE-EEEEECCCCCSSC-------------CSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSS
T ss_pred ecCCCCCcee-eEEEEEEEEeccC-------------CcccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhh
Confidence 888877654 6999999999732 479999999999999999999998886
Q ss_pred ----CCeEEEEeCCeEecccCCEEEEEeecCCC---cEEEE-EEEecCcc
Q psy1177 223 ----ADLAKISLTNPVCTEVNEKIALSRRVEKH---WSWIE-GTVSAKVL 264 (283)
Q Consensus 223 ----~~~~~l~L~~Pv~~~~gdr~ii~R~~~~~---~~tiG-G~v~~~~~ 264 (283)
...|+|+|++|+|++.++||++|+ ..++ ++|+| |.|++...
T Consensus 347 ~~g~~~~v~l~~~~pv~~~~~~rfilr~-~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 347 ISGNEXYXAFELEEKVLAEVGDRVLITR-LDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp CCSSCCCEEEEEEEEECCCSSCCCBEEC-TTSCTTSCCCCCBCCEEECCC
T ss_pred cCCCEEEEEEEcCccEEecCCCeEEEEE-CCCCccCceEeeEEEEEeccc
Confidence 128999999999999999999964 2233 89999 99987744
No 9
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=5.1e-36 Score=291.89 Aligned_cols=218 Identities=20% Similarity=0.272 Sum_probs=190.6
Q ss_pred HHHHHHHHHhcCCCC--CCcEEEeecCCCCCHH------------------------HHHHHHHhhCCCCCCCCCCCceE
Q psy1177 4 KYVTQKWRLERTVAE--GAPVIPISAQLKYNIE------------------------VLCEYITKKIPIPIRDFTSSPRL 57 (283)
Q Consensus 4 ~~~eIr~~l~~t~~~--~~piIpvSA~~g~nI~------------------------~Ll~~L~~~i~~p~r~~~~~~r~ 57 (283)
..++++++++.+++. ++|++|+||++|+||+ +|+++|+. ++.|.++.+.||||
T Consensus 168 i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~~~~~p~r~ 246 (458)
T 1f60_A 168 IVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTDKPLRL 246 (458)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCCCTTSCCEE
T ss_pred HHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcccCCCCcEE
Confidence 345667788777664 6999999999999985 69999995 88888889999999
Q ss_pred EEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCce
Q psy1177 58 IVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGL 137 (283)
Q Consensus 58 ~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~r 137 (283)
||+++|.++| +|+|++|+|++|.+++||+|.++|.+.. ++|++|++|++++++|.|||+
T Consensus 247 ~i~~v~~~~g--------~G~v~~G~v~~G~l~~gd~v~~~p~~~~-------------~~V~~i~~~~~~~~~a~aG~~ 305 (458)
T 1f60_A 247 PLQDVYKIGG--------IGTVPVGRVETGVIKPGMVVTFAPAGVT-------------TEVKSVEMHHEQLEQGVPGDN 305 (458)
T ss_dssp EEEEEEEETT--------TEEEEEEECCBSCBCTTCEEEEETTTEE-------------EEEEEEEETTEECSCBCTTCE
T ss_pred EEEEEEEeCC--------CcEEEEEEEeCCeEcCCCEEEECCCCce-------------EEEeEEEECCeEEEEEcCCCE
Confidence 9999999976 4799999999999999999999999887 999999999999999999999
Q ss_pred EEEecccCCCccccccccceeeccCCC-CCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeE
Q psy1177 138 IGVGTKIEPTLCRADRLVGQVLGAVGA-LPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGG 216 (283)
Q Consensus 138 vai~l~ld~~i~r~di~rG~vl~~~g~-l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~ 216 (283)
|+|++ .++++.|+.||+||+.++. .+...+.|+|+++||+. ..||.+|+.++||+||+++.|
T Consensus 306 v~i~l---~gi~~~~i~rG~vl~~~~~~~~~~~~~f~a~v~~l~~--------------~~~i~~g~~~~~~~~t~~~~~ 368 (458)
T 1f60_A 306 VGFNV---KNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNH--------------PGQISAGYSPVLDCHTAHIAC 368 (458)
T ss_dssp EEEEE---SSCCTTTSCTTCEEEETTSSCCCCCSEEEEEEEECSC--------------SCCBCTTCCCEEEETTEEEEE
T ss_pred EEEEE---cCCcccccCceeEEecCCCCCCceeeEEEEEEEEeCC--------------CCCCCCCCEEEEEeccceEEE
Confidence 99998 4577789999999999985 56667899999999963 578999999999999999999
Q ss_pred EEEEec--------------------CC--eEEEEeCCeEecccCC------EEEEEeecCCCcEEEE-EEEecCcc
Q psy1177 217 RVLATK--------------------AD--LAKISLTNPVCTEVNE------KIALSRRVEKHWSWIE-GTVSAKVL 264 (283)
Q Consensus 217 ~v~~~~--------------------~~--~~~l~L~~Pv~~~~gd------r~ii~R~~~~~~~tiG-G~v~~~~~ 264 (283)
+|..+. ++ .|+|+|.+|+|++.++ ||+|| +. .+|+| |+|++...
T Consensus 369 ~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr-~~---~~tv~~G~v~~~~~ 441 (458)
T 1f60_A 369 RFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVR-DM---RQTVAVGVIKSVDK 441 (458)
T ss_dssp EEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEE-ET---TEEEEEEEEEEEEC
T ss_pred EEEEEEeEecCccccccccCccccCCCCEEEEEEEECCeEEEecCccCCCCCcEEEE-EC---CeEEEEEEEEeecc
Confidence 998762 11 7899999999999999 99995 42 38999 99976543
No 10
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=6.5e-35 Score=282.73 Aligned_cols=212 Identities=15% Similarity=0.217 Sum_probs=183.3
Q ss_pred HHHHHHHHhcCCCC---CCcEEEeecCCCCCHHH------------HHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCC
Q psy1177 5 YVTQKWRLERTVAE---GAPVIPISAQLKYNIEV------------LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPG 69 (283)
Q Consensus 5 ~~eIr~~l~~t~~~---~~piIpvSA~~g~nI~~------------Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G 69 (283)
.+++.++++.+++. ++|+||+||++|+||++ |+++|++ ++.|.++.++||||||+++|. |
T Consensus 181 ~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~r~~v~~~~~--~-- 255 (439)
T 3j2k_7 181 KEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDN-LPNFNRSVDGPIRLPIVDKYK--D-- 255 (439)
T ss_pred HHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHh-CCCCccCCCCCeEEEEEEEEc--C--
Confidence 34455677777764 78999999999999987 7788885 888888889999999999984 3
Q ss_pred CcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcc
Q psy1177 70 CEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLC 149 (283)
Q Consensus 70 ~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~ 149 (283)
.|+|++|+|.+|++++||+|.++|++.. ++|++|++|++++++|.|||+|+++| .+++
T Consensus 256 ------~G~v~~G~v~~G~l~~Gd~v~~~p~~~~-------------~~V~~i~~~~~~~~~a~aG~~v~~~l---~gi~ 313 (439)
T 3j2k_7 256 ------MGTVVLGKLESGSIFKGQQLVMMPNKHN-------------VEVLGILSDDTETDFVAPGENLKIRL---KGIE 313 (439)
T ss_pred ------CCeEEEEEEEeeEEecCCEEEEccCCce-------------EEEEEEEECCeEcCEecCCCcceEEE---eccc
Confidence 4799999999999999999999999987 99999999999999999999999998 5688
Q ss_pred ccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC------
Q psy1177 150 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA------ 223 (283)
Q Consensus 150 r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~------ 223 (283)
+.|+.|||||+.+++.|+....|+|+++||+. ..++..|+.+.+|++|.++.|+|..+..
T Consensus 314 ~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~--------------~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t 379 (439)
T 3j2k_7 314 EEEILPGFILCDPSNLCHSGRTFDVQIVIIEH--------------KSIICPGYNAVLHIHTCIEEVEITALISLVDKKS 379 (439)
T ss_pred hhhcCCcEEecCCCCCCceeeEEEEEEEEeCC--------------CCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCc
Confidence 88999999999999998888899999999973 4579999999999999999999987521
Q ss_pred ----------------CeEEEEeCCeEecccCC------EEEEEeecCCCcEEEE-EEEec
Q psy1177 224 ----------------DLAKISLTNPVCTEVNE------KIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 224 ----------------~~~~l~L~~Pv~~~~gd------r~ii~R~~~~~~~tiG-G~v~~ 261 (283)
..+.+.+.+|||++..+ +|+|+ +. .+|+| |+|..
T Consensus 380 ~~~~~~~~~~l~~~~~~~v~~~~~~p~~~e~~~~~~~~g~f~l~-d~---~~tv~~G~i~~ 436 (439)
T 3j2k_7 380 GEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLR-DE---GKTIAIGKVLK 436 (439)
T ss_pred hhhhccCcceecCCcEEEEEEEeCCeEEEeeccccccCCCEEEE-EC---CceEEEEEEEE
Confidence 15889999999999643 78885 33 37999 99854
No 11
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=3.6e-35 Score=283.58 Aligned_cols=212 Identities=17% Similarity=0.151 Sum_probs=184.9
Q ss_pred HHHHHHHHhcCC--CCCCcEEEeecCCCCCHHH------------HHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCC
Q psy1177 5 YVTQKWRLERTV--AEGAPVIPISAQLKYNIEV------------LCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGC 70 (283)
Q Consensus 5 ~~eIr~~l~~t~--~~~~piIpvSA~~g~nI~~------------Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~ 70 (283)
.++++++++.++ +.++|++|+||++|+||++ |+++|+. ++.|.++.+.||||||+++|..++.
T Consensus 181 ~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~~~~~~v~~v~~~~~~-- 257 (434)
T 1zun_B 181 KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET-VEIASDRNYTDLRFPVQYVNRPNLN-- 257 (434)
T ss_dssp HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH-SCCTTCCCSSSCEEECCEEECSSSS--
T ss_pred HHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhc-CCCcccCCCCCcEEEEEEEeccCCC--
Confidence 456677888777 6789999999999999986 8888885 8888888889999999999987543
Q ss_pred cccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCccc
Q psy1177 71 EVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCR 150 (283)
Q Consensus 71 ~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r 150 (283)
|.+++|||.+|+|++||+|.++|++.. ++|++|++|++++++|.|||+|++++.. .
T Consensus 258 ------~~g~~G~v~~G~l~~gd~v~~~p~~~~-------------~~V~~i~~~~~~~~~a~aG~~v~~~l~~-----~ 313 (434)
T 1zun_B 258 ------FRGFAGTLASGIVHKGDEIVVLPSGKS-------------SRVKSIVTFEGELEQAGPGQAVTLTMED-----E 313 (434)
T ss_dssp ------CCEEEEECCBSCEETTCEEEETTTCCE-------------EEEEEEEETTEEESEECTTCEEEEEESS-----C
T ss_pred ------ceEEEEEEecceEeCCCEEEEecCCeE-------------EEEEEEEEcCcceeEecCCCEEEEEeCC-----c
Confidence 334799999999999999999999877 9999999999999999999999998852 2
Q ss_pred cccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC-------
Q psy1177 151 ADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA------- 223 (283)
Q Consensus 151 ~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~------- 223 (283)
.++.|||+|+.++++|..++.|+|+++||. ..||.+|+.++||+||+++.|+|..+..
T Consensus 314 ~~i~~G~~l~~~~~~~~~~~~f~a~~~~l~---------------~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~ 378 (434)
T 1zun_B 314 IDISRGDLLVHADNVPQVSDAFDAMLVWMA---------------EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTL 378 (434)
T ss_dssp CCCCTTCEEEETTSCCCEEEEEEEEEEECC---------------SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTC
T ss_pred cccCCccEEECCCCCCCcccEEEEEEEEec---------------cccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccc
Confidence 378899999999999888889999999996 4689999999999999999999997641
Q ss_pred -------------CeEEEEeCCeEecccCC------EEEEEeecCCCcEEEE-EEEe
Q psy1177 224 -------------DLAKISLTNPVCTEVNE------KIALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 224 -------------~~~~l~L~~Pv~~~~gd------r~ii~R~~~~~~~tiG-G~v~ 260 (283)
..|+|+|++|+|++.++ ||+|+ +. ++.+|+| |+|.
T Consensus 379 ~~~~~~~l~~~d~~~v~~~~~~p~~~~~~~~~~~~grf~l~-d~-~~~~tv~~G~i~ 433 (434)
T 1zun_B 379 EEGPASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVI-DR-LTNGTVAAGMII 433 (434)
T ss_dssp CCCCCSCBCTTCEEEEEEEEEEEEECCCTTTCTTTTEEEEE-CT-TTCCEEEEEEEE
T ss_pred cccCccEeCCCCEEEEEEEECCeEEEcccccCCccceEEEE-EC-CCCcEEEEEEEe
Confidence 27899999999999998 99995 33 4468999 9884
No 12
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-35 Score=294.94 Aligned_cols=213 Identities=14% Similarity=0.135 Sum_probs=185.3
Q ss_pred HHHHHHHHH-hcCCC--CCCcEEEeecCCCCCHH--------------HHHHHHHhhCCCCCCCCCCCceEEEEEEeecC
Q psy1177 4 KYVTQKWRL-ERTVA--EGAPVIPISAQLKYNIE--------------VLCEYITKKIPIPIRDFTSSPRLIVIRSFDVN 66 (283)
Q Consensus 4 ~~~eIr~~l-~~t~~--~~~piIpvSA~~g~nI~--------------~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~ 66 (283)
..+++++++ ..+++ +++|+||+||++|+||+ +|+++|++.++ |.++.++||||||+++|.+
T Consensus 338 i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~~v~~~- 415 (592)
T 3mca_A 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSIDDVYRS- 415 (592)
T ss_dssp HHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheeeEEEec-
Confidence 345666777 65665 47899999999999997 89999997444 7778889999999999998
Q ss_pred CCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceec-EEecCceEEEecccC
Q psy1177 67 KPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQ-FAVPGGLIGVGTKIE 145 (283)
Q Consensus 67 g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~-~A~aG~rvai~l~ld 145 (283)
|. |+|++|+|.+|+|++||+|.++|++.. ++|++|++|+++++ +|.|||+|+++|
T Consensus 416 ~~--------g~v~~G~v~~G~l~~Gd~v~i~p~~~~-------------~~V~~i~~~~~~~~~~a~aG~~v~~~l--- 471 (592)
T 3mca_A 416 PR--------SVTVTGRVEAGNVQVNQVLYDVSSQED-------------AYVKNVIRNSDPSSTWAVAGDTVTLQL--- 471 (592)
T ss_dssp TT--------EEEEEEEEEESEEETTCEEEETTTTEE-------------EEEEEEECSSSCSCCEEETTCEEEEEE---
T ss_pred CC--------eEEEEEEEeeeeEccCCEEEEccCCce-------------EEEEEEEEcCccCcceecCCCEEEEEE---
Confidence 53 799999999999999999999999988 99999999999999 999999999998
Q ss_pred CCccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec---
Q psy1177 146 PTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK--- 222 (283)
Q Consensus 146 ~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~--- 222 (283)
.+++..++.|||||+.++.++.....|+|+++||.. ..||.+|+.++||+||+++.|+|.+..
T Consensus 472 ~~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~~~~--------------~~pi~~g~~~~l~~~t~~~~~~i~l~~~~~ 537 (592)
T 3mca_A 472 ADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFDI--------------HGPILSGSTLVLHLGRTVTSVSLKIVTVNN 537 (592)
T ss_dssp SSSCGGGCCTTCEEECSSSCCEEESEEEEEEEECSC--------------SSCEETTEEEEEECSSCEEEEEEEEEESSS
T ss_pred ccccccccceEEEeccCCCCccccCeEEEEEEEECC--------------CccCCCCCEEEEEEcCcEEEEEEEEEeccc
Confidence 467778999999999999877778899999999973 479999999999999999999994321
Q ss_pred --------C--CeEEEE-eCCeEec------ccCCEEEEEeecCCCcEEEE-EEEe
Q psy1177 223 --------A--DLAKIS-LTNPVCT------EVNEKIALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 223 --------~--~~~~l~-L~~Pv~~------~~gdr~ii~R~~~~~~~tiG-G~v~ 260 (283)
+ ..|+|+ |.+|+|+ ..++||+|| .. .+|+| |+|.
T Consensus 538 ~~~~~l~~gd~~~v~l~fl~~p~~~e~~~~~~~~~rfilr-~~---~~Tv~~G~i~ 589 (592)
T 3mca_A 538 KRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILR-RS---GDTVAAGIVK 589 (592)
T ss_dssp SCCSEECSSCEEEEEEEESSSCEEECCTTTCHHHHEEEEE-SS---SSEEEEEEEE
T ss_pred cchhccCCCCEEEEEEEECCCcEEEEeccCCCCCCeEEEE-EC---CcEEEEEEEE
Confidence 1 278899 9999999 789999994 42 37999 9874
No 13
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=2.5e-34 Score=303.24 Aligned_cols=223 Identities=19% Similarity=0.208 Sum_probs=194.7
Q ss_pred HHHHHHHHHhcCCC--CCCcEEEeecCCC--------CCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCccc
Q psy1177 4 KYVTQKWRLERTVA--EGAPVIPISAQLK--------YNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVD 73 (283)
Q Consensus 4 ~~~eIr~~l~~t~~--~~~piIpvSA~~g--------~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~ 73 (283)
..++++++++.+++ +++|++|+||++| .||++|+++|+++++.|.++.++||+|||+++|.++|
T Consensus 434 i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G------ 507 (1289)
T 3avx_A 434 VEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISG------ 507 (1289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETT------
T ss_pred HHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccccccceeeeccccccccC------
Confidence 34678888987776 4799999999999 4699999999998999988889999999999999965
Q ss_pred CCcceEEEEEEEeeEeeCCCEEEEecCc--eeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcccc
Q psy1177 74 DLKGGVAGGSILRGVLKVGMEIEVRPGL--VSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRA 151 (283)
Q Consensus 74 ~~rGtVvtGtv~sG~l~vGD~v~i~P~~--~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~ 151 (283)
+|+|++|+|.+|+|++||+|.++|.+ .. ++|++||+|++++++|.|||+|++++ .++++.
T Consensus 508 --~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~-------------~kVksI~~~~~~v~eA~AGd~Vgl~L---~GI~~~ 569 (1289)
T 3avx_A 508 --RGTVVTGRVERGIIKVGEEVEIVGIKETQK-------------STCTGVEMFRKLLDEGRAGENVGVLL---RGIKRE 569 (1289)
T ss_dssp --TEEEEEEECCBSEEETTCEEEEESSSSCEE-------------EEEEEEECSSCEESEEETTCEEEEEE---SSCCGG
T ss_pred --CcEEEEEEEeccEEecCCEEEEecCCCcee-------------EEEEEEeecCceeeEEecCCcceeEe---eecchh
Confidence 58999999999999999999999987 45 89999999999999999999999998 467788
Q ss_pred ccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEecC--------
Q psy1177 152 DRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA-------- 223 (283)
Q Consensus 152 di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~~-------- 223 (283)
|+.|||+|+.++.+++ ...|+++++||.+..|+. ..|+..|+.++++++|+++.|+|.+.+.
T Consensus 570 dI~RGdVL~~~~~~~~-~~~F~A~V~~L~~~egg~---------~~pi~~G~~p~l~igT~~vtg~I~L~~~~~~L~~Gd 639 (1289)
T 3avx_A 570 EIERGQVLAKPGTIKP-HTKFESEVYILSKDEGGR---------HTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGD 639 (1289)
T ss_dssp GCCTTCEEESTTSCCE-EEEEEEEEEECCGGGTSC---------SSCBCTTCCCEEECSSCEEEEEEECCTTCCCBCTTC
T ss_pred cCCcccEEecCCCCcc-ceeEEEEEEEEccccccc---------cccccCCCceEEEEeeeeEEEEEEECCCcccccCCC
Confidence 9999999999998655 569999999998543332 4689999999999999999999985321
Q ss_pred -CeEEEEeCCeEecccCCEEEEEeecCCCcEEEE-EEEecCcc
Q psy1177 224 -DLAKISLTNPVCTEVNEKIALSRRVEKHWSWIE-GTVSAKVL 264 (283)
Q Consensus 224 -~~~~l~L~~Pv~~~~gdr~ii~R~~~~~~~tiG-G~v~~~~~ 264 (283)
..|+|+|.+|+|++.|+||+|| . .++|+| |+|++...
T Consensus 640 ~a~V~L~l~~Pi~ve~g~RFiLR-d---~grTIG~G~V~~v~~ 678 (1289)
T 3avx_A 640 NIKMVVTLIHPIAMDDGLRFAIR-E---GGRTVGAGVVAKVLS 678 (1289)
T ss_dssp CCEEEEEEEEEEECCTTCEEEEE-E---TTEEEEEEEEEEECC
T ss_pred EEEEEEEECceEEEccCCEEEEE-e---CCeEEEEEEEeeech
Confidence 3899999999999999999995 3 359999 99977644
No 14
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1e-34 Score=283.42 Aligned_cols=212 Identities=17% Similarity=0.194 Sum_probs=184.2
Q ss_pred HHHHHHHHHhcC-CCC---CCcEEEeecCCCCCHHH--------------HHHHHHhhCCCCCCCCCCCceEEEEEEeec
Q psy1177 4 KYVTQKWRLERT-VAE---GAPVIPISAQLKYNIEV--------------LCEYITKKIPIPIRDFTSSPRLIVIRSFDV 65 (283)
Q Consensus 4 ~~~eIr~~l~~t-~~~---~~piIpvSA~~g~nI~~--------------Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V 65 (283)
..++++++++.+ ++. ++|++|+||++|+||++ |+++|+. ++.|.++.++||||||+++|.-
T Consensus 206 i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~v~~~~~~ 284 (467)
T 1r5b_A 206 CVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDS-MTHLERKVNAPFIMPIASKYKD 284 (467)
T ss_dssp HHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHH-CCCCHHHHTSCCEEECCEEEES
T ss_pred HHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHh-CCCCcCCCCCCcEEEEEEEEeC
Confidence 344677888877 776 89999999999999964 7889985 8888888889999999999862
Q ss_pred CCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC-CceecEEecCceEEEeccc
Q psy1177 66 NKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE-QNELQFAVPGGLIGVGTKI 144 (283)
Q Consensus 66 ~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~-~~~v~~A~aG~rvai~l~l 144 (283)
+|+|++|+|.+|+|++||+|.++|++.. ++|++|+++ ++++++|.|||+|+++|.
T Consensus 285 ----------~G~v~~G~v~~G~l~~gd~v~~~p~~~~-------------~~V~~i~~~~~~~~~~a~aG~~v~i~l~- 340 (467)
T 1r5b_A 285 ----------LGTILEGKIEAGSIKKNSNVLVMPINQT-------------LEVTAIYDEADEEISSSICGDQVRLRVR- 340 (467)
T ss_dssp ----------SSEEEEEECCBSEEETTEEEEEETTTEE-------------EEEEEEECTTCCEESEEETTCEEEEEEE-
T ss_pred ----------CCeEEEEEEeeeEEeeCCEEEEccCCee-------------EEEEEEeccCCcEeeEEcCCCEEEEEEe-
Confidence 4799999999999999999999999887 999999999 999999999999999984
Q ss_pred CCCccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceeeEEEEEec--
Q psy1177 145 EPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK-- 222 (283)
Q Consensus 145 d~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~~~v~~~~-- 222 (283)
+ ++.|+.|||+|+.++..+..++.|+|+++||+. ..+|..|+.+.||++|+++.|++..+.
T Consensus 341 --g-~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~--------------~~~~~~g~~~~~~~~t~~~~~~~~~i~~~ 403 (467)
T 1r5b_A 341 --G-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILEL--------------PSILTTGYSCVMHIHTAVEEVSFAKLLHK 403 (467)
T ss_dssp --S-CCTTCCTTCEEECSSSCCCEEEEEEEEEEECSS--------------CCCBSSCCCBEEESSSCCCCBEESSCCCC
T ss_pred --c-cHhhCCceEEEeCCCCCCccceEEEEEEEEeCC--------------CCccCCCCEEEEEEeCCEEEEEEEEEEEE
Confidence 4 667999999999999877878899999999973 468999999999999999999986431
Q ss_pred -----------------C--CeEEEEeCCeEecccCC------EEEEEeecCCCcEEEE-EEEec
Q psy1177 223 -----------------A--DLAKISLTNPVCTEVNE------KIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 223 -----------------~--~~~~l~L~~Pv~~~~gd------r~ii~R~~~~~~~tiG-G~v~~ 261 (283)
+ ..|+|+|.+|+|++.++ ||+|| +. .+|+| |+|+.
T Consensus 404 ~d~~~~~~~~~~~~l~~g~~~~v~l~~~~p~~~~~~~~~~~~grf~lr-d~---~~Tv~~G~i~~ 464 (467)
T 1r5b_A 404 LDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLR-DQ---GTTVAVGKVVK 464 (467)
T ss_dssp CCSSCCCCSSCCSBCCTTCBCCEEEEEEEEEECCCTTTCHHHHEEEEE-CS---SSCEEEEEEEE
T ss_pred ecCCccccccCccccCCCCEEEEEEEECcEEEEEEcCcCCCCccEEEE-EC---CeEEEEEEEEE
Confidence 1 27899999999999994 99995 33 27999 99854
No 15
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=2.8e-33 Score=273.87 Aligned_cols=219 Identities=13% Similarity=0.080 Sum_probs=179.4
Q ss_pred HHHHHHhcCCCC--CCcEEEeecCCCCCHH---------------HHHHHHHhh---CCC--CCCCCCCCceEEEEEEee
Q psy1177 7 TQKWRLERTVAE--GAPVIPISAQLKYNIE---------------VLCEYITKK---IPI--PIRDFTSSPRLIVIRSFD 64 (283)
Q Consensus 7 eIr~~l~~t~~~--~~piIpvSA~~g~nI~---------------~Ll~~L~~~---i~~--p~r~~~~~~r~~IdR~F~ 64 (283)
++++++..+++. ++|++|+||++|+||+ +|+++|+.. ++. |.++.+.||||||+++|.
T Consensus 197 ~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~v~~v~~ 276 (483)
T 3p26_A 197 KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIP 276 (483)
T ss_dssp HHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEEEEEEEC
T ss_pred HHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEEEEEEEEc
Confidence 344555555553 7899999999999997 367777753 233 667788999999999999
Q ss_pred cCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCC--------ceecEEecCc
Q psy1177 65 VNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQ--------NELQFAVPGG 136 (283)
Q Consensus 65 V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~--------~~v~~A~aG~ 136 (283)
+++. .+.|+|++|+|.+|.|++||+|.++|++.. ++|++|++|+ +++++|.|||
T Consensus 277 ~~~~-----~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~-------------~~V~~i~~~~~~~~~~~~~~~~~a~aG~ 338 (483)
T 3p26_A 277 SKKT-----SNDLALVSGKLESGSIQPGESLTIYPSEQS-------------CIVDKIQVGSQQGQSTNHEETDVAIKGD 338 (483)
T ss_dssp ---C-----CSCCEEEEEEEEESEECTTCEEEEETTTEE-------------EEEEEEEETTTC-----CCEESCEETTC
T ss_pred cCCc-----CCCceEEEEEEecceEccCCEEEEeCCCCe-------------EEEEEEEEcCccccccccccccEECCCC
Confidence 8742 125899999999999999999999999988 9999999996 8999999999
Q ss_pred eEEEecccCCCccccccccceeeccCCC-CCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEecceee
Q psy1177 137 LIGVGTKIEPTLCRADRLVGQVLGAVGA-LPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTG 215 (283)
Q Consensus 137 rvai~l~ld~~i~r~di~rG~vl~~~g~-l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v~ 215 (283)
+|+|+|+ +++..|+.|||||+.+++ .+..++.|+|+++||.. ..||.+|+.++|++||+++.
T Consensus 339 ~v~~~l~---~~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~--------------~~~l~~g~~~~l~~~t~~~~ 401 (483)
T 3p26_A 339 FVTLKLR---KAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDM--------------NRPLLPGTPFILFIGVKEQP 401 (483)
T ss_dssp EEEEEEE---SCCGGGCCTTCEEECTTCCCCEECSEEEEEEEECSC--------------SSCBCTTCEEEEEETTEEEE
T ss_pred EEEEEEE---ecccccCCceEEEEcCCCCCCceeeEEEEEEEEECC--------------CCCCCCCCEEEEEeCceEEE
Confidence 9999984 567789999999999998 77778899999999962 57999999999999999999
Q ss_pred EEEEEec-----------C----------CeEEEEe---CCeEeccc------CCEEEEEeecCCCcEEEE-EEEecCcc
Q psy1177 216 GRVLATK-----------A----------DLAKISL---TNPVCTEV------NEKIALSRRVEKHWSWIE-GTVSAKVL 264 (283)
Q Consensus 216 ~~v~~~~-----------~----------~~~~l~L---~~Pv~~~~------gdr~ii~R~~~~~~~tiG-G~v~~~~~ 264 (283)
|+|..+. . ..|+|+| .+|||++. --+|+|+ +. .+|+| |+|.....
T Consensus 402 ~~v~~i~~~~d~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~-~~---~~tv~~G~i~~~~~ 477 (483)
T 3p26_A 402 ARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLR-KD---GRTIAAGKISEITQ 477 (483)
T ss_dssp EEEEEEEEEEEETTEECCSCCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEE-ET---TEEEEEEEEEEECC
T ss_pred EEEEEEEEEEcCCCcccccCccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEE-eC---CCEEEEEEEEEecc
Confidence 9999762 1 1788999 77999982 3488984 42 38999 99976543
No 16
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=250.36 Aligned_cols=169 Identities=15% Similarity=0.213 Sum_probs=147.1
Q ss_pred CCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceec
Q psy1177 51 FTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQ 130 (283)
Q Consensus 51 ~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~ 130 (283)
.++|||||||++|+ | .|||++|||++|.+++||+|.++|++.. ++|++||+|+++++
T Consensus 3 ~~~p~rl~v~~v~~--g--------~G~v~~G~v~~G~i~~Gd~v~i~P~~~~-------------~~V~~I~~~~~~~~ 59 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--D--------MGTVVLGKLESGSICKGQQLVMMPNKHN-------------VEVLGILSDDVETD 59 (204)
T ss_dssp ----CBEEEEEEEE--S--------SSEEEEEECCBSCEESSCCEEETTTTEE-------------EEEEEECSSSSCBS
T ss_pred CCCCEEEEEEEEEc--C--------CCEEEEEEEecCEEECCCEEEECCCCCE-------------EEEEEEEECCEEeE
Confidence 57899999999997 4 3799999999999999999999999988 99999999999999
Q ss_pred EEecCceEEEecccCCCccccccccceeeccCCCCCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEe
Q psy1177 131 FAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIG 210 (283)
Q Consensus 131 ~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~g 210 (283)
+|.|||+|+++| .++++.|+.|||||+.++++|+.++.|+|+++||+. ..||.+|+.+++|+|
T Consensus 60 ~A~aGd~V~l~L---~gi~~~di~rG~vl~~~~~~~~~~~~f~a~v~~l~~--------------~~~i~~g~~~~l~~~ 122 (204)
T 3e1y_E 60 TVAPGENLKIRL---KGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIEH--------------KSIICPGYNAVLHIH 122 (204)
T ss_dssp EECTTSEEEEEE---EESSSSCCCTTCEEBCSSSCCCCCSEEEEEEECCSC--------------CSCCCTTEEEEEESS
T ss_pred EECCCCEEEEEE---cCCCHHHCccceEEECCCCCCchhEEEEEEEEEeCC--------------CCccCCCceEEEEEe
Confidence 999999999999 467788999999999999988888899999999973 458999999999999
Q ss_pred cceeeEEEEEecC----------------------CeEEEEeCCeEecccC------CEEEEEeecCCCcEEEE-EEEec
Q psy1177 211 SLSTGGRVLATKA----------------------DLAKISLTNPVCTEVN------EKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 211 t~~v~~~v~~~~~----------------------~~~~l~L~~Pv~~~~g------dr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
|+++.|+|..+.. ..++|+|.+|+|++.. .||+|+ +. .+|+| |+|..
T Consensus 123 t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilr-d~---~~Tva~G~V~~ 198 (204)
T 3e1y_E 123 TCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLR-DE---GKTIAIGKVLK 198 (204)
T ss_dssp SCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEE-CS---SSCCEEEEEEE
T ss_pred CCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEEEEEEECCeEEEEEcccCcCCCCEEEE-EC---CcEEEEEEEEE
Confidence 9999999987621 1689999999999975 599995 33 27999 99876
Q ss_pred Cc
Q psy1177 262 KV 263 (283)
Q Consensus 262 ~~ 263 (283)
..
T Consensus 199 v~ 200 (204)
T 3e1y_E 199 LV 200 (204)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 17
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-33 Score=280.55 Aligned_cols=217 Identities=13% Similarity=0.090 Sum_probs=180.5
Q ss_pred HHHHHHHhcCCC--CCCcEEEeecCCCCCHH---------------HHHHHHHhhC-CC----CCCCCCCCceEEEEEEe
Q psy1177 6 VTQKWRLERTVA--EGAPVIPISAQLKYNIE---------------VLCEYITKKI-PI----PIRDFTSSPRLIVIRSF 63 (283)
Q Consensus 6 ~eIr~~l~~t~~--~~~piIpvSA~~g~nI~---------------~Ll~~L~~~i-~~----p~r~~~~~~r~~IdR~F 63 (283)
+++++++..+++ +++|+||+||++|+||+ +|+++|+... +. |.+..+.||||||+++|
T Consensus 330 ~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~ 409 (611)
T 3izq_1 330 SKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEII 409 (611)
T ss_dssp HHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEECCEEE
T ss_pred HHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhheeeee
Confidence 344456665555 47899999999999997 4788888632 22 44678899999999999
Q ss_pred ecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCC--------ceecEEecC
Q psy1177 64 DVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQ--------NELQFAVPG 135 (283)
Q Consensus 64 ~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~--------~~v~~A~aG 135 (283)
.+++. .+.|||++|+|.+|+|++||+|.++|++.. ++|++|++|+ +++++|.||
T Consensus 410 ~~~~~-----~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~-------------~~VksI~~~~~~~~~~~~~~v~~A~aG 471 (611)
T 3izq_1 410 PSKKT-----SNDLALVSGKLESGSIQPGESLTIYPSEQS-------------CIVDKIQVGSQQGQSTNHEETDVAIKG 471 (611)
T ss_dssp CCSSS-----CSSSSEEEEEEEESEECTTCEEEETTTTEE-------------EEEEEEECSSCCSCSSSCCCCCCEETT
T ss_pred ccCcc-----CCCeeEEEEEEEeceeccCCEEEEecCCce-------------EEEEEEEEcccccccccccccceecCC
Confidence 98742 125899999999999999999999999988 9999999995 899999999
Q ss_pred ceEEEecccCCCccccccccceeeccCCC-CCceeeEEEEEEEEeeeeccccccCCCccccccCCCCCcEEEEEEeccee
Q psy1177 136 GLIGVGTKIEPTLCRADRLVGQVLGAVGA-LPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLST 214 (283)
Q Consensus 136 ~rvai~l~ld~~i~r~di~rG~vl~~~g~-l~~~~~~~~a~~~~l~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~gt~~v 214 (283)
|+|+|+| .++...|+.||+||+.+++ .+..++.|+|+++||.. ..||.+|++++||+||+++
T Consensus 472 d~v~l~l---~~~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~--------------~~~l~~g~~~~l~~~t~~~ 534 (611)
T 3izq_1 472 DFVTLKL---RKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDM--------------NRPLLPGTPFILFIGVKEQ 534 (611)
T ss_dssp CEEEEEE---SSCCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSC--------------SSCBCTTEEEEEESSSCEE
T ss_pred CcceEEe---eeccHhhCcceEEccCCCCCCCceeeEEEEEEEEECC--------------CCCCCCCCEEEEEECCeEe
Confidence 9999998 4577789999999999998 66777899999999962 5799999999999999999
Q ss_pred eEEEEEec----C-----------------CeEEEEe---CCeEeccc------CCEEEEEeecCCCcEEEE-EEEec
Q psy1177 215 GGRVLATK----A-----------------DLAKISL---TNPVCTEV------NEKIALSRRVEKHWSWIE-GTVSA 261 (283)
Q Consensus 215 ~~~v~~~~----~-----------------~~~~l~L---~~Pv~~~~------gdr~ii~R~~~~~~~tiG-G~v~~ 261 (283)
.|+|..+. . ..|+|+| .+|||++. ..||+|| +. .+|+| |+|.+
T Consensus 535 ~~~v~~l~~~~d~~t~~~~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr-~~---~~Tva~G~i~~ 608 (611)
T 3izq_1 535 PARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLR-KD---GRTIAAGKISE 608 (611)
T ss_dssp EEEEEEEEESSSSCCCBCTTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEE-SS---SSEEEEEEEEE
T ss_pred eEEeeeeeeeecccccccccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEE-eC---CCEEEEEEEEE
Confidence 99999862 1 1688999 77999986 2489995 32 37999 99854
No 18
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.46 E-value=3.8e-14 Score=140.59 Aligned_cols=119 Identities=22% Similarity=0.184 Sum_probs=98.0
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCC--CCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEE
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIP--IPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEI 95 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~--~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v 95 (283)
.++|++|+||++|.||++|++.|...++ .+..+.+.|++++|+++|..+| +|+|++|+|.+|.+++||.+
T Consensus 140 ~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g--------~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 140 GDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKG--------RGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp SSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTT--------CCCCEEEEEEEECCSSEEEE
T ss_pred CCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCC--------CceEEEEEEecCEEEcCCEE
Confidence 3579999999999999999999987644 3445667899999999998865 47999999999999999986
Q ss_pred EEecCceeecCCCccccccceEEEEEEEeCC-ceecEEecCceEEEecccCCCccccccccceeeccCCCC
Q psy1177 96 EVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQ-NELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGAL 165 (283)
Q Consensus 96 ~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~-~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~l 165 (283)
.++... ++|++|+.++ +++++|.||++|+|. +++ +...+||+++.+.+-
T Consensus 212 --~~g~~~-------------~kVr~i~~~~g~~v~~A~~G~~V~i~-----g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 212 --VAGKSW-------------AKVRLMFDENGRAVNEAYPSMPVGII-----GWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp --CCSSCC-------------EEEEEEEECCCCCSCCSCCSTTCCCC-----SSE-EEEEEESSCCSCCSS
T ss_pred --EeCCce-------------EEEEEEEcCCCCCCcEEcCCCEEEEE-----CCC-CCCCCCCEEEecCCh
Confidence 445443 8999999985 799999999999982 343 345889999887654
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.43 E-value=2e-12 Score=129.74 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=104.3
Q ss_pred cCCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCC
Q psy1177 14 RTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGM 93 (283)
Q Consensus 14 ~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD 93 (283)
..++...+++++||++|.||++|+++|.+++|.|..+.+.||++.|..++.- .++|+|+.|+|.+|++++||
T Consensus 152 ~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d--------~~~G~v~~~rV~sG~l~~Gd 223 (600)
T 2ywe_A 152 VLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYD--------PYRGAVAFVRIFDGEVKPGD 223 (600)
T ss_dssp TSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEE--------TTTEEEEEEEEEESEECTTC
T ss_pred hhCCCcccEEEEEeecCCCchHHHHHHHHhcccccccccCCcceeEEEEeec--------ccceEEEEEEEEeCEEecCC
Confidence 3455555799999999999999999999999999888889999888776543 34699999999999999999
Q ss_pred EEEEecCceeecCCCccccccceEEEEEEEeCC---ceecEEecCceEEEecccCCCccccccccceeeccCCCC
Q psy1177 94 EIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQ---NELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGAL 165 (283)
Q Consensus 94 ~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~---~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~l 165 (283)
.|.++|.+.. .+|.+|..+. .++++|.|||.+++...+ . ...++.+||.|+.++..
T Consensus 224 ~I~~~~~~~~-------------~~v~~i~~~~~~~~~v~~~~aGdi~~v~~gi-~--~~~~~~~GDtl~~~~~~ 282 (600)
T 2ywe_A 224 KIMLMSTGKE-------------YEVTEVGAQTPKMTKFDKLSAGDVGYIAASI-K--DVRDIRIGDTITHAKNP 282 (600)
T ss_dssp EEEETTTTEE-------------EECCEEEEESSSEEEESCEETTCEEEEESSC-C--CTTSSCTTCEEEESSSC
T ss_pred EEEeccccce-------------EeeecccccCCCceECCEEecCceeeeeccc-c--chhhccCCCEEEeCCCc
Confidence 9999998877 7888888654 679999999977764321 1 23578899999886543
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.33 E-value=1.9e-11 Score=122.63 Aligned_cols=127 Identities=18% Similarity=0.085 Sum_probs=102.8
Q ss_pred CCCCCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCE
Q psy1177 15 TVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGME 94 (283)
Q Consensus 15 t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~ 94 (283)
.++...+++++||++|.||++|+++|.++++.|..+.+.||++.|..++.- .+.|.++.|++.+|++++||+
T Consensus 151 lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d--------~~~G~v~~~rV~sG~l~~Gd~ 222 (599)
T 3cb4_D 151 VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFD--------NYLGVVSLIRIKNGTLRKGDK 222 (599)
T ss_dssp TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEE--------TTTEEEEEEEEEESCEESSCE
T ss_pred hCCCcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeecccc--------ccccEEEEEEEEeCEEecCCE
Confidence 455556799999999999999999999999999888889999998766543 346999999999999999999
Q ss_pred EEEecCceeecCCCccccccceEEEEEEEeC---CceecEEecCceEEEecccCCCccccccccceeeccCCCC
Q psy1177 95 IEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE---QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGAL 165 (283)
Q Consensus 95 v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~---~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~l 165 (283)
+.++|.+.. .+|.+|..+ ..+++++.||+.+++...+ . ...++.+||.|+.++..
T Consensus 223 v~~~~~~~~-------------~~v~~i~~~~~~~~~~~~~~aGdi~~~~~gi-~--~~~~~~~GDtl~~~~~~ 280 (599)
T 3cb4_D 223 VKVMSTGQT-------------YNADRLGIFTPKQVDRTELKCGEVGWLVCAI-K--DIHGAPVGDTLTLARNP 280 (599)
T ss_dssp EEETTTCCE-------------EECCEEEEESSSEEECSEECTTCEEEEECCC-S--SGGGSCTTCEEEESSSC
T ss_pred EEeccccce-------------eEEeeeeeccCCceECCEEcCCCeeEeeccc-c--ccccCccCCEeeecCCc
Confidence 999998876 788888775 4678999999976663221 1 23578899999876543
No 21
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.25 E-value=1.7e-11 Score=123.00 Aligned_cols=120 Identities=23% Similarity=0.216 Sum_probs=92.5
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCC--CC---CCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIP--IP---IRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVG 92 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~--~p---~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vG 92 (283)
..+|++|+||++|.||++|+++|...++ .+ ..+.++|++++|+.+|...| +|++++|+|.+|+|++|
T Consensus 190 ~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g--------~G~v~~~rV~~G~Lk~G 261 (594)
T 1g7s_A 190 SQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETG--------LGMTIDAVIYDGILRKD 261 (594)
T ss_dssp TEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETT--------EEEEEEEEEEESEEETT
T ss_pred CcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccCCCceeEEEEEEEeCC--------cEEEEEEEEeeCEEeeC
Confidence 4569999999999999999999987553 21 12457899999999998754 58999999999999999
Q ss_pred CEEEEecCceeecCCCccccccceEEEEEEEeC------------CceecEEe--cCceEEEecccCCCcccccccccee
Q psy1177 93 MEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE------------QNELQFAV--PGGLIGVGTKIEPTLCRADRLVGQV 158 (283)
Q Consensus 93 D~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~------------~~~v~~A~--aG~rvai~l~ld~~i~r~di~rG~v 158 (283)
|.|.+.|.+.. ..++|++|... ..++++|. +|+.+++ .++ ++...|+.
T Consensus 262 d~v~~~~~~~~-----------~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~-----~~l--~~~~~Gd~ 323 (594)
T 1g7s_A 262 DTIAMMTSKDV-----------ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA-----PGI--DDVMAGSP 323 (594)
T ss_dssp CEEEEEBSSSE-----------EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC-----SSC--TTBCTTCE
T ss_pred CEEEECCCCCc-----------eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE-----ccc--CCCCCCCE
Confidence 99999987542 12799999753 45788898 8888776 122 24567887
Q ss_pred eccCC
Q psy1177 159 LGAVG 163 (283)
Q Consensus 159 l~~~g 163 (283)
|+...
T Consensus 324 l~~~~ 328 (594)
T 1g7s_A 324 LRVVT 328 (594)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 76654
No 22
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.25 E-value=9.6e-12 Score=122.42 Aligned_cols=117 Identities=19% Similarity=0.083 Sum_probs=92.6
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC--CCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEE
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP--IPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIE 96 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~--~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~ 96 (283)
++|++|+||++|.||++|++.|..... .+..+.+.|++++|+++|..+| +|+|++|+|.+|++++||.+.
T Consensus 140 ~~~~v~vSAktG~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g--------~G~v~~~~V~~Gtlk~Gd~v~ 211 (501)
T 1zo1_I 140 ESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKG--------RGPVATVLVREGTLHKGDIVL 211 (501)
T ss_dssp SCEEEECCTTTCTTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSS--------SSEEEEEEEEESBCCTTCEEE
T ss_pred CccEEEEeeeeccCcchhhhhhhhhhhhhccccccccccccceEEEEEeCC--------cEEEEEEEEEeeEEecCCEEE
Confidence 479999999999999999999986433 2334567789999999998754 589999999999999999998
Q ss_pred EecCceeecCCCccccccceEEEEEEEe-CCceecEEecCceEEEecccCCCccccccccceeeccCCC
Q psy1177 97 VRPGLVSKDSEGKLTCKPIFSRIVSLFA-EQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGA 164 (283)
Q Consensus 97 i~P~~~~~~~~~~~~~~p~~~kV~sIq~-~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~ 164 (283)
+.+ .. ++|++|+. +++++++|.||++|+|. +++ +...+|++++...+
T Consensus 212 ~g~--~~-------------~kVr~i~~~~g~~v~~a~~g~~V~i~-----gl~-~~~~~Gd~~~~~~~ 259 (501)
T 1zo1_I 212 CGF--EY-------------GRVRAMRNELGQEVLEAGPSIPVEIL-----GLS-GVPAAGDEVTVVRD 259 (501)
T ss_dssp EEB--SS-------------CEEEEECCTTTTSEEEECCSSCSSSE-----EEC-SCCCTTEEEEEECS
T ss_pred Ecc--ce-------------eEEEEEEecCCCcCcEeccCCcEEEe-----CCC-CCCCCCCEEEecCC
Confidence 754 23 79999985 67899999999999873 221 12467887765443
No 23
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.25 E-value=9.8e-12 Score=123.01 Aligned_cols=122 Identities=15% Similarity=0.198 Sum_probs=93.4
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCCCCCCC-C--------CCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeE
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIPIPIRD-F--------TSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGV 88 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~-~--------~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~ 88 (283)
+-+|++.+||++|.||++|+++|.+++|.|... . +.||... +|.+..- .+ ..++|.++.|+|.||+
T Consensus 250 ~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~---vfKi~~~-~d-~~~~G~i~~~RV~sG~ 324 (529)
T 2h5e_A 250 EITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGF---VFKIQAN-MD-PKHRDRVAFMRVVSGK 324 (529)
T ss_dssp SEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEE---EEEECSS-CC-SSSSCCCEEEEEEESC
T ss_pred ceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEE---EEEEeec-cC-cCCCceEEEEEEecCe
Confidence 457999999999999999999999999877532 1 2455433 5666320 00 1236899999999999
Q ss_pred eeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccccceeeccCCC
Q psy1177 89 LKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGA 164 (283)
Q Consensus 89 l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~ 164 (283)
+++||+|.+.|.+.. .+|.+|+.+ .+++++|.|||-|||. ++ ++...||.|+.++.
T Consensus 325 l~~g~~v~~~~~~~~-------------~~v~~i~~~~g~~~~~v~~a~aGdiv~i~-----~l--~~~~~Gdtl~~~~~ 384 (529)
T 2h5e_A 325 YEKGMKLRQVRTAKD-------------VVISDALTFMAGDRSHVEEAYPGDILGLH-----NH--GTIQIGDTFTQGEM 384 (529)
T ss_dssp EETTCEEEETTTTEE-------------EECSCEECCCC-----CCEECTTCEEEEC-----CS--SCCCTTCEEESSCC
T ss_pred EcCCCEEEEeeCCCE-------------EEeceeeEEeCCCceEcceECCCCEEEEe-----cc--CCCccCCEeecCCc
Confidence 999999999998877 899999976 5689999999999993 22 35677999998654
No 24
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.17 E-value=9.2e-11 Score=93.75 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=56.7
Q ss_pred ceEEEEEEEeeEeeCCCEEEEecCc-eeecCCCccccccceEEEEEEEeCCceecEEecCceEEEecccCCCcccccccc
Q psy1177 77 GGVAGGSILRGVLKVGMEIEVRPGL-VSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLV 155 (283)
Q Consensus 77 GtVvtGtv~sG~l~vGD~v~i~P~~-~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~r 155 (283)
|+++.|+|++|.|++|+.| |+. .. ++|+|||++++++++|.|||+||++++ +++- ++.+
T Consensus 48 gpvivGrVe~G~LK~G~~V---Pg~~~v-------------g~VkSIE~~~e~v~eA~~GdnVai~Ik---g~~~-~I~~ 107 (116)
T 1xe1_A 48 KDVIIGTVESGMIGVGFKV---KGPSGI-------------GGIVRIERNREKVEFAIAGDRIGISIE---GKIG-KVKK 107 (116)
T ss_dssp EEEEEEEEEEEEEETTCEE---ECSSCE-------------EEEEEEEETTEEESEEETTCEEEEEEE---SCCC-CCCT
T ss_pred CCeeEEEEeEEEEcCCCCc---CCCceE-------------EEEEEEEECCcCcCCcCCCCEEEEEEE---CCcc-ccCC
Confidence 5789999999999999999 888 66 899999999999999999999999985 3333 7889
Q ss_pred ceeec
Q psy1177 156 GQVLG 160 (283)
Q Consensus 156 G~vl~ 160 (283)
|++|-
T Consensus 108 GdVLy 112 (116)
T 1xe1_A 108 GDVLE 112 (116)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 99874
No 25
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.16 E-value=9.2e-11 Score=118.89 Aligned_cols=116 Identities=24% Similarity=0.208 Sum_probs=96.1
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCCC-CCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEE
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIRD-FTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEV 97 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~-~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i 97 (283)
-+|++++||++|.||++|++.|.+++|.|... .++||.+.|.+++.-. ++|.++.|+|.+|+|++||+|.+
T Consensus 247 ~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~--------~~G~~~~~rV~sG~l~~g~~v~~ 318 (665)
T 2dy1_A 247 LYPVALASGEREIGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDP--------FMGQVAYLRLYRGRLKPGDSLQS 318 (665)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEET--------TTEEEEEEEEEESEECTTEEEBC
T ss_pred eeEEEEeecccCcCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcC--------CCCeEEEEEEcccEEecCCEEEc
Confidence 36999999999999999999999989887643 6789999999988652 36899999999999999999998
Q ss_pred ecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccccceeeccCCC
Q psy1177 98 RPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGA 164 (283)
Q Consensus 98 ~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~ 164 (283)
.+ .. .+|.+|..+ .+++++|.||+-++|. ++ +++..||.|+.++.
T Consensus 319 ~~--~~-------------~~v~~l~~~~g~~~~~v~~a~aG~iv~i~-----gl--~~~~~Gdtl~~~~~ 367 (665)
T 2dy1_A 319 EA--GQ-------------VRLPHLYVPMGKDLLEVEEAEAGFVLGVP-----KA--EGLHRGMVLWQGEK 367 (665)
T ss_dssp TT--SC-------------EEESSEEEEETTEEEEESCEETTCEEEES-----SC--TTCCTTCEEESSSC
T ss_pred CC--Ce-------------EEEeEEEEEeCCCeeECCEECCCCEEEEe-----CC--ccCccCCEEecCCC
Confidence 76 33 788888753 4589999999999993 23 25678999987654
No 26
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.09 E-value=8.8e-10 Score=112.44 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=96.4
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCC--------------------CCCCCceEEEEEEeecCCCCCcccCCcce
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIR--------------------DFTSSPRLIVIRSFDVNKPGCEVDDLKGG 78 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r--------------------~~~~~~r~~IdR~F~V~g~G~~~~~~rGt 78 (283)
-+|++.+||+++.|++.|+++|.+++|.|.. +.++||.+.|..++.- .++|.
T Consensus 261 ~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d--------~~~G~ 332 (704)
T 2rdo_7 261 IILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATD--------PFVGN 332 (704)
T ss_pred eeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEc--------CCCce
Confidence 3799999999999999999999999987743 2467889999887764 23688
Q ss_pred EEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccc
Q psy1177 79 VAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRL 154 (283)
Q Consensus 79 VvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~ 154 (283)
+..|+|.||+|++||+|...+.+.. .+|.+|..+ ..++++|.||+-++|. ++ ++..
T Consensus 333 ~~~~RV~sG~l~~g~~v~~~~~~~~-------------~~v~~l~~~~g~~~~~v~~~~aGdIv~i~-----gl--~~~~ 392 (704)
T 2rdo_7 333 LTFFRVYSGVVNSGDTVLNSVKAAR-------------ERFGRIVQMHANKREEIKEVRAGDIAAAI-----GL--KDVT 392 (704)
T ss_pred EEEEEEEeeeecCCCEEEeCCCCcE-------------EEeceEEEEeCCCceEcceeCCCCEEEEe-----Cc--ccCc
Confidence 9999999999999999998877665 788888654 4689999999999993 23 2567
Q ss_pred cceeeccCCC
Q psy1177 155 VGQVLGAVGA 164 (283)
Q Consensus 155 rG~vl~~~g~ 164 (283)
.||.|+.++.
T Consensus 393 ~GdTl~~~~~ 402 (704)
T 2rdo_7 393 TGDTLCDPDA 402 (704)
T ss_pred cCCEEeCCCc
Confidence 7999987653
No 27
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.05 E-value=7.7e-10 Score=109.42 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=91.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCCC---------CCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEe
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIRD---------FTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVL 89 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~---------~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l 89 (283)
-+|++++||++|.||++|+++|.+++|.|... .+.||...|..+....-| +++|.+..++|.||++
T Consensus 250 ~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp-----~~~g~l~~~RV~sG~l 324 (528)
T 3tr5_A 250 LTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDP-----GHRDRIAFLRIASGQY 324 (528)
T ss_dssp EEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC------CCCCEEEEEEEEESCE
T ss_pred eeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCc-----cCCceEEEEEEecCeE
Confidence 45999999999999999999999989877532 236776666433221012 1579999999999999
Q ss_pred eCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccccceeeccC
Q psy1177 90 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAV 162 (283)
Q Consensus 90 ~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~ 162 (283)
+.||.|...+.+.. .+|.+++.+ .+++++|.|||-+|+. ++ ++...||.|+..
T Consensus 325 ~~g~~v~~~~~~~~-------------~rv~~~~~~~~~~~~~v~~a~aGdI~~~~-----~l--~~~~~GDtl~~~ 381 (528)
T 3tr5_A 325 QKGMKAYHVRLKKE-------------IQINNALTFMAGKRENAEEAWPGDIIGLH-----NH--GTIQIGDTFTQG 381 (528)
T ss_dssp ETTEEEEETTTTEE-------------EEESSCBCCBTTCSSCCSEECTTCEEEEE-----ES--SSCCTTCEEESS
T ss_pred cCCCEEEecCCCce-------------EEEeeeEEEeCCCeeECCEECCCCEEEEc-----CC--CCCccCCEEcCC
Confidence 99999999998877 899998764 5579999999999982 11 356678888764
No 28
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.02 E-value=2e-09 Score=109.57 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=94.8
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCCCCCC------------------CCCCCceEEEEEEeecCCCCCcccCCcceEEE
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIPIPIR------------------DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r------------------~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvt 81 (283)
+|++++||++|.|++.|+++|.+++|.|.. +.++||.+.|..++.- .++|.+..
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d--------~~~G~~~~ 327 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMAD--------PYVGRLTF 327 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEE--------TTTEEEEE
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEc--------CCCCcEEE
Confidence 699999999999999999999999988764 2567899999887764 23688999
Q ss_pred EEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccccce
Q psy1177 82 GSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQ 157 (283)
Q Consensus 82 Gtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~ 157 (283)
|+|.||+|++||.|.....+.. .+|..|..+ ..++++|.||+-++|. + + ++...||
T Consensus 328 ~RV~sG~l~~g~~v~~~~~~~~-------------~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-g----l--~~~~~Gd 387 (691)
T 1dar_A 328 IRVYSGTLTSGSYVYNTTKGRK-------------ERVARLLRMHANHREEVEELKAGDLGAVV-G----L--KETITGD 387 (691)
T ss_dssp EEEEESEEESSCEEEETTTTEE-------------EECCEEEEECSSCEEEESEEETTCEEEEE-C----C--SSCCTTC
T ss_pred EEEeeeeEecCCEEEecCCCcE-------------EEEceEEEEeCCCceEcceecCCCEEEEe-C----c--ccCccCC
Confidence 9999999999999998776655 677777543 4579999999999993 2 2 2456799
Q ss_pred eeccCCC
Q psy1177 158 VLGAVGA 164 (283)
Q Consensus 158 vl~~~g~ 164 (283)
.|+.++.
T Consensus 388 tl~~~~~ 394 (691)
T 1dar_A 388 TLVGEDA 394 (691)
T ss_dssp EEEETTC
T ss_pred EEecCCC
Confidence 9987654
No 29
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.91 E-value=6.8e-09 Score=105.68 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=94.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCC--------------------CCCCCceEEEEEEeecCCCCCcccCCcce
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIR--------------------DFTSSPRLIVIRSFDVNKPGCEVDDLKGG 78 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r--------------------~~~~~~r~~IdR~F~V~g~G~~~~~~rGt 78 (283)
-+|++.+||++|.|++.|++.|.+++|.|.. +.++||.+.|..++.- .++|.
T Consensus 253 ~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d--------~~~g~ 324 (693)
T 2xex_A 253 FYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTD--------PYVGK 324 (693)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEE--------TTTEE
T ss_pred eeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeec--------CCCce
Confidence 3699999999999999999999999988743 2567899988887653 34688
Q ss_pred EEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccc
Q psy1177 79 VAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRL 154 (283)
Q Consensus 79 VvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~ 154 (283)
+.-|+|.||+|++||+|.....+.. .+|..|..+ ..++++|.||+-++|. + + ++..
T Consensus 325 ~~~~RV~sG~l~~g~~v~~~~~~~~-------------~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-g----l--~~~~ 384 (693)
T 2xex_A 325 LTFFRVYSGTMTSGSYVKNSTKGKR-------------ERVGRLLQMHANSRQEIDTVYSGDIAAAV-G----L--KDTG 384 (693)
T ss_dssp EEEEEEEESEEETTEEEEETTTTEE-------------EEECCEEEECSSCEEECSEEETTCEEEEE-S----C--SSCC
T ss_pred EEEEEEEeeeEecCCEEEecCCCce-------------EEeceEEEEeCCCceEccccCcCCEEEEe-C----c--ccCc
Confidence 9999999999999999998755555 788888544 3578999999999994 2 2 2456
Q ss_pred cceeeccCC
Q psy1177 155 VGQVLGAVG 163 (283)
Q Consensus 155 rG~vl~~~g 163 (283)
.||.|+.++
T Consensus 385 ~GdTl~~~~ 393 (693)
T 2xex_A 385 TGDTLCGEK 393 (693)
T ss_dssp TTCEEEETT
T ss_pred cCCEEecCC
Confidence 799988765
No 30
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.53 E-value=3.6e-07 Score=90.66 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=87.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCC---------CCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEe
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIR---------DFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVL 89 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r---------~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l 89 (283)
-+|++..||+++.||+.||++|.+++|.|.. +.+.||...|-..+. ..+..++|-+.-++|.||+|
T Consensus 268 ~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~-----~~~~~~~Grla~~RV~sG~l 342 (548)
T 3vqt_A 268 LTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQA-----NMDKAHRDRMAFLRICSGTF 342 (548)
T ss_dssp EEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEEC-----C-------CEEEEEEEESCE
T ss_pred cceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEc-----cCCcCCCCeEEEEEEeccee
Confidence 3699999999999999999999999988752 234677665543321 01223568888999999999
Q ss_pred eCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCccccccccceeeccCCC
Q psy1177 90 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGA 164 (283)
Q Consensus 90 ~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl~~~g~ 164 (283)
+.||.|...-.+.. .||..+..+ ..++++|.|||=+||. ++ ++...||.|+.++.
T Consensus 343 ~~g~~v~~~~~~~~-------------~rv~~l~~~~g~~~~~v~~a~AGdIvai~-----gl--~~~~~GDTl~~~~~ 401 (548)
T 3vqt_A 343 TRGMRLKHHRTGKD-------------VTVANATIFMAQDRTGVEEAFPGDIIGIP-----NH--GTIKIGDTFTESKE 401 (548)
T ss_dssp ETTCEEEETTTTEE-------------EECTTCEECCCSSCCSSCEECTTCEEEEE-----CS--SCCCTTCEEESSSS
T ss_pred cCCCEEEeeccccc-------------cccchhhhhccccccccCEEecCCEEEec-----CC--ccCccCCEecCCCC
Confidence 99999998766665 677777654 2468999999999982 22 35677888887543
No 31
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.31 E-value=2.3e-06 Score=87.14 Aligned_cols=119 Identities=15% Similarity=0.217 Sum_probs=88.9
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCCCCC--------------------CCCCCCceEEEEEEeecCCCCCcccCCcc
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIPIPI--------------------RDFTSSPRLIVIRSFDVNKPGCEVDDLKG 77 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~--------------------r~~~~~~r~~IdR~F~V~g~G~~~~~~rG 77 (283)
+-.|++..||+++.|++.|++++.+++|.|. -+.++||.+.|-. + .++.++|
T Consensus 263 ~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK---~-----~~d~~~G 334 (709)
T 4fn5_A 263 EIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFK---I-----ATDPFVG 334 (709)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEE---C-----CCBTTTB
T ss_pred eeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEE---e-----ecccCCC
Confidence 4469999999999999999999999998874 2456788777654 3 2345678
Q ss_pred eEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEEecccCCCcccccc
Q psy1177 78 GVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGVGTKIEPTLCRADR 153 (283)
Q Consensus 78 tVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai~l~ld~~i~r~di 153 (283)
-+.-|+|.||+|++||+|...-.+.. .+|..|..+ ..++++|.||+-++| .++ .++
T Consensus 335 ~la~~RV~sGtl~~G~~v~~~~~~~~-------------~~v~~l~~~~g~~~~~v~~~~aGdIv~i-----~Gl--~~~ 394 (709)
T 4fn5_A 335 TLTFARVYSGVLSSGDSVLNSVKGKK-------------ERVGRMVQMHANQREEIKEVRAGDIAAL-----IGM--KDV 394 (709)
T ss_dssp CCCEEEEEESCEETTCBCBCTTTCCC-------------CBCCCEECCCSSCCCEESEECTTCEEEE-----CSC--SSC
T ss_pred ceEEEeccCCCCCCCCEEEEecCCcE-------------EeecceeEeecceeeEeeeecCCCeeee-----cCC--CcC
Confidence 88899999999999999976544433 455555333 357899999999998 233 256
Q ss_pred ccceeeccCCC
Q psy1177 154 LVGQVLGAVGA 164 (283)
Q Consensus 154 ~rG~vl~~~g~ 164 (283)
..|+.|+..+.
T Consensus 395 ~~gdTl~~~~~ 405 (709)
T 4fn5_A 395 TTGDTLCSIEK 405 (709)
T ss_dssp CTTCEEECSSS
T ss_pred ccCCEecCCCc
Confidence 77888887654
No 32
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.08 E-value=1.9e-07 Score=94.13 Aligned_cols=100 Identities=19% Similarity=0.146 Sum_probs=78.5
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEe
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVR 98 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~ 98 (283)
-.|++..||+++.||+.|+++|.+++|.|..+.+.||.+.|..+ .++.++|.+..++|.||++++||.|.+.
T Consensus 212 ~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~~~~~~~~~Vfk~--------~~d~~~G~la~~RV~sG~l~~g~~v~~~ 283 (638)
T 3j25_A 212 LFPLYHGSAKSNIGIDNLIEVITNKFYSSTHRGPSELCGNVFKI--------EYTKKRQRLAYIRLYSGVLHLRDSVRVS 283 (638)
T ss_dssp CCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGGSCCCCCBEEBCC--------CCCSTTCCCCBCCBSSBCCCSCCCSSSC
T ss_pred cccccccccccCCCchhHhhhhhccccCcccchhhhhcceeeee--------eeeccCceEEEEEEEcCcccCCCccccc
Confidence 36999999999999999999999989988877778888776543 2345678888999999999999998765
Q ss_pred cCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEE
Q psy1177 99 PGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGV 140 (283)
Q Consensus 99 P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai 140 (283)
.... .+|..+..+ ..++++|.||+-++|
T Consensus 284 ~~~~--------------~~v~~l~~~~g~~~~~v~~a~aGdIv~i 315 (638)
T 3j25_A 284 EKEK--------------IKVTEMYTSINGELCKIDRAYSGEIVIL 315 (638)
T ss_dssp CCCC--------------SSBCCCCSSCCCCBSCCCTTBCCCCSCC
T ss_pred cCcc--------------eeEEeeecccccccccccccccceEEEE
Confidence 4322 345444332 346889999999887
No 33
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.04 E-value=0.0034 Score=61.57 Aligned_cols=80 Identities=26% Similarity=0.261 Sum_probs=63.2
Q ss_pred EEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCc
Q psy1177 57 LIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGG 136 (283)
Q Consensus 57 ~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~ 136 (283)
.-|-.+|.+++. |+|++-.|..|.++.|..+.+...+.. . ...+|.||+-|+++++++..|+
T Consensus 411 a~v~~~f~~~~~--------~~iaG~~v~~G~~~~~~~~~~~r~~~~-------i---~~g~i~sl~~~k~~v~e~~~g~ 472 (501)
T 1zo1_I 411 AEVRDVFKSPKF--------GAIAGCMVTEGVVKRHNPIRVLRDNVV-------I---YEGELESLRRFKDDVNEVRNGM 472 (501)
T ss_dssp EEEEECSSCCCS--------SCEEEEEEEEEEEETTCEEECCSSSCC-------C---EEEEBCCEEETTEEESEEETTC
T ss_pred EEEEEEEecCCC--------CEEEEEEEEeCEEecCCeEEEEeCCeE-------E---EEEEEehhcccCccccEECCCC
Confidence 456678887653 688888999999999999999765531 0 1169999999999999999999
Q ss_pred eEEEecccCCCccccccccceee
Q psy1177 137 LIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 137 rvai~l~ld~~i~r~di~rG~vl 159 (283)
-|||.+. +. .|+..||++
T Consensus 473 ecgi~~~---~~--~~~~~gd~~ 490 (501)
T 1zo1_I 473 ECGIGVK---NY--NDVRTGDVI 490 (501)
T ss_dssp CEEEEBC---CC--TTCCTTCEE
T ss_pred EEEEEEc---Cc--CCCCCCCEE
Confidence 9999773 22 378888875
No 34
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.62 E-value=0.016 Score=60.17 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhCCCCC-------------------------CCCCCCceEEEEEEeecCCCCCcccCCcce-EEEEEEEe
Q psy1177 33 IEVLCEYITKKIPIPI-------------------------RDFTSSPRLIVIRSFDVNKPGCEVDDLKGG-VAGGSILR 86 (283)
Q Consensus 33 I~~Ll~~L~~~i~~p~-------------------------r~~~~~~r~~IdR~F~V~g~G~~~~~~rGt-VvtGtv~s 86 (283)
++.|+++|.+++|.|. -+.++||.+.|-..+. +.++|. +.-++|.|
T Consensus 331 ~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~--------~~~~G~~l~~~RV~s 402 (842)
T 1n0u_A 331 ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVP--------TSDKGRFYAFGRVFA 402 (842)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEE--------BSSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeee--------cCCCCceEEEEEEEe
Confidence 4899999999998774 1456788887755443 234685 88999999
Q ss_pred eEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeC----CceecEEecCceEEE
Q psy1177 87 GVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAE----QNELQFAVPGGLIGV 140 (283)
Q Consensus 87 G~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~----~~~v~~A~aG~rvai 140 (283)
|+|+.||+|.++-...... +++ .-...||..|..+ ..++++|.||+-+||
T Consensus 403 G~l~~g~~v~v~~~~~n~~-~~~---~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai 456 (842)
T 1n0u_A 403 GTVKSGQKVRIQGPNYVPG-KKD---DLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGL 456 (842)
T ss_dssp SEEETTCEEEEECTTCCSS-SCT---TEEEEECCEEEEEETTEEEEESEEETTCEEEE
T ss_pred eeecCCCEEEeccccccCC-CCc---ccceEEeeeeEeeccCcccccceeCCCCEEEE
Confidence 9999999998863221000 000 0001577777554 346899999999999
No 35
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=96.57 E-value=0.0027 Score=49.15 Aligned_cols=80 Identities=21% Similarity=0.246 Sum_probs=62.9
Q ss_pred EEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCc
Q psy1177 57 LIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGG 136 (283)
Q Consensus 57 ~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~ 136 (283)
.-|-.+|.+++. |+|.+-.|.+|.++.+..+.++-.+.. .+ ..++.||.-|..++.++.+|.
T Consensus 9 AeVr~vF~isk~--------g~IAGc~V~~G~i~r~~~vRv~Rd~~v-------I~---eG~i~SLkr~KddV~EV~~G~ 70 (99)
T 1d1n_A 9 AEVRQTFKVSKV--------GTIAGCYVTDGKITRDSKVRLIRQGIV-------VY---EGEIDSLKRYKDDVREVAQGY 70 (99)
T ss_dssp EEECCCCCCSSS--------CCCEEEEECSSBCCSSSEEEEECSSSE-------EE---EEECSEEECSSSCCSCCBTTC
T ss_pred EEEEEEEEcCCc--------eEEEEEEEEcCEEEcCCeEEEEECCEE-------EE---EeEEhhhcccccccceECCCc
Confidence 345567888664 677677799999999999999976544 11 258999999999999999999
Q ss_pred eEEEecccCCCccccccccceee
Q psy1177 137 LIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 137 rvai~l~ld~~i~r~di~rG~vl 159 (283)
-|||.+. +. +|+..||++
T Consensus 71 ECGi~l~---~~--~dik~GD~I 88 (99)
T 1d1n_A 71 ECGLTIK---NF--NDIKEGDVI 88 (99)
T ss_dssp EEEEECT---TC--SSCSSCSEE
T ss_pred EEEEEEc---Cc--CCCCCCCEE
Confidence 9999873 22 378888875
No 36
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.40 E-value=0.011 Score=47.13 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=63.9
Q ss_pred EEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceecEEecCc
Q psy1177 57 LIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGG 136 (283)
Q Consensus 57 ~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~~A~aG~ 136 (283)
.-|-.+|.+++.|+ .++|.+-.|.+|.++.+..+.++-.+.. . ...++.||.-|..++.++.+|.
T Consensus 13 AeVr~vF~isk~g~-----~~~IAGC~V~~G~i~r~~~vRviRdg~v-------I---~eG~i~SLkrfKdDVkEV~~G~ 77 (120)
T 2crv_A 13 ASILATFTVTEGKK-----KIPVADCRVQKGQLERHKKFKLIRNGQV-------I---WKGSLTSLKHHKDDISVIKTGM 77 (120)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEESCEETTSCEEEEETTEE-------E---EEECCSEEESSSSCCSEECTTC
T ss_pred EEEeEEEEeCCCCc-----eeEEeEEEEEcCEEEcCCeEEEEECCEE-------E---EEeEehhhcccccccceecCCC
Confidence 56777899876531 1237677899999999999999976654 1 1258999999999999999999
Q ss_pred eEEEecccCCCcccc-ccccceee
Q psy1177 137 LIGVGTKIEPTLCRA-DRLVGQVL 159 (283)
Q Consensus 137 rvai~l~ld~~i~r~-di~rG~vl 159 (283)
-|||.+. +. + |+..||++
T Consensus 78 ECGi~l~---~f--niDik~GDiI 96 (120)
T 2crv_A 78 DCGLSLD---EE--KVEFKPGDQV 96 (120)
T ss_dssp EEEEECS---CT--TSCCCTTEEE
T ss_pred EEEEEEc---cC--CCCCCCCCEE
Confidence 9999873 22 4 67778865
No 37
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=95.89 E-value=0.037 Score=54.65 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=76.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEEEEEEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccc
Q psy1177 34 EVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCK 113 (283)
Q Consensus 34 ~~Ll~~L~~~i~~p~r~~~~~~r~~IdR~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~ 113 (283)
+++.++|...++ |.....-.-..-|--+|.+++ | .-.|+|++-.|..|.++.|..+.++-.+.. .
T Consensus 428 ~~~~~~~~~~l~-~~~~e~~~g~a~v~~~f~~~~-~----~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~-------i-- 492 (537)
T 3izy_P 428 EDLQEELSSRLP-CIVEEHPIGEASILATFSITE-G----KKKVPVAGCRVQKGQIEKQKKFKLIRNGHV-------I-- 492 (537)
T ss_dssp HHHHHHHSSSSS-CSSSCCCSSEEEEEEEESSCS-S----SCCSCEEEEEECSSEEESSSEEEEESSSSE-------E--
T ss_pred HHHHHHHHhccC-CceEEEEEEEEEEcCcEEECC-C----CccCcEEEEEEEeCeEeeCCeEEEecCCEE-------E--
Confidence 567777765443 322222234688888899864 2 013688888999999999999999876542 0
Q ss_pred cceEEEEEEEeCCceecEEecCceEEEecccCCCccccccccceee
Q psy1177 114 PIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVL 159 (283)
Q Consensus 114 p~~~kV~sIq~~~~~v~~A~aG~rvai~l~ld~~i~r~di~rG~vl 159 (283)
...++.||+-|++++.++..|.-|||.+.. .. .|+..||++
T Consensus 493 -~~g~i~slk~~k~~v~ev~~g~ecgi~~~~--~~--~~~~~gd~i 533 (537)
T 3izy_P 493 -WKGSLISLKHHKDDTSVVKTGMDCGLSLDE--EK--IEFKVGDAI 533 (537)
T ss_dssp -EEEECCCCCCSSCCCSEEETTCEEEEESSS--SC--SSCSCCCEE
T ss_pred -EEEEEehhcccCcccceEcCCCEEEEEEcC--cc--cCCCCCCEE
Confidence 126899999999999999999999997742 12 378888875
No 38
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.52 E-value=0.091 Score=52.39 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=63.3
Q ss_pred CCceEEEE--EEeecCCCCCcccCCcceEEEEEEEeeEeeCCCEEEEecCceeecCCCccccccceEEEEEEEeCCceec
Q psy1177 53 SSPRLIVI--RSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQ 130 (283)
Q Consensus 53 ~~~r~~Id--R~F~V~g~G~~~~~~rGtVvtGtv~sG~l~vGD~v~i~P~~~~~~~~~~~~~~p~~~kV~sIq~~~~~v~ 130 (283)
+|-.+-|- .+|.+++ |+|++-.|..|.++.|..+.+ +.+.. ..+|.||+-++++++
T Consensus 462 ~~~~~~i~~~~~f~~~~---------~~i~g~~v~~G~~~~~~~~~~-~~~~~------------~g~i~sl~~~k~~v~ 519 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK---------PAIGGVEVLTGVIRQGYPLMN-DDGET------------VGTVESMQDKGENLK 519 (594)
T ss_dssp CCEEEEEEEEEEEECSS---------SEEEEEEEEEEEEETTCEEEC-TTSCE------------EEEEEEEEETTEEES
T ss_pred eeEEEEEecceEEcCCC---------CeEEEEEEecCEEecCCeEEe-cCCcE------------EEEEehhcccCcccc
Confidence 44444443 5887754 578888999999999999998 55532 279999999999999
Q ss_pred EEecCceEEEecccCCCccccccccceeecc
Q psy1177 131 FAVPGGLIGVGTKIEPTLCRADRLVGQVLGA 161 (283)
Q Consensus 131 ~A~aG~rvai~l~ld~~i~r~di~rG~vl~~ 161 (283)
+|..|+-|||.++. ..+ =.|+..||+|-.
T Consensus 520 ~~~~g~e~gi~~~~-~~~-~~~~~~~d~~~~ 548 (594)
T 1g7s_A 520 SASRGQKVAMAIKD-AVY-GKTIHEGDTLYV 548 (594)
T ss_dssp EEETTCCEEEEEET-CCB-TTTBCTTCEEEE
T ss_pred ccCCCCEEEEEEeC-ccc-CCCCCCCCEEEE
Confidence 99999999997732 111 147777887643
No 39
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=94.36 E-value=0.033 Score=41.59 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=40.5
Q ss_pred EeeEeeCCCEEEEe-cCceeecCCCccccccceEEEEEEE-eCCceecEE-ecCceEEEecccCCCcccccccc
Q psy1177 85 LRGVLKVGMEIEVR-PGLVSKDSEGKLTCKPIFSRIVSLF-AEQNELQFA-VPGGLIGVGTKIEPTLCRADRLV 155 (283)
Q Consensus 85 ~sG~l~vGD~v~i~-P~~~~~~~~~~~~~~p~~~kV~sIq-~~~~~v~~A-~aG~rvai~l~ld~~i~r~di~r 155 (283)
....+++||+|||+ |++. ++..+|..|. ..+++++.| .||+.|-|-+ +..+...|++|
T Consensus 26 ~rN~f~~GD~iEi~~P~g~-----------~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~--~~~~~~~dilR 86 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIE-----------NFTQVIEKIWDEDGNELDAARHPLQIVKFKV--KRPLFPYNMMR 86 (89)
T ss_dssp ESSCBCTTCEEEEESTTSC-----------CEEEECCCEEETTSCEESCBCSTTCEEEEEC--SSCCCTTCEEE
T ss_pred EcCCcCCCCEEEEEcCCCC-----------cEEEEeHHeEcCCCCEeeEcCCCCeEEEEEC--CCCCCCCCEEE
Confidence 37789999999965 5442 2236778887 678899999 9999998855 33344444443
No 40
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.85 E-value=0.085 Score=50.07 Aligned_cols=51 Identities=24% Similarity=0.198 Sum_probs=36.3
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhC----------------------CCCCCCCCCCceEEEEEEeecCCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKI----------------------PIPIRDFTSSPRLIVIRSFDVNKP 68 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i----------------------~~p~r~~~~~~r~~IdR~F~V~g~ 68 (283)
..+|++++||++|.||++|++.|.+.+ ..|++...+++++..-.-+..+.|
T Consensus 321 ~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~~i~y~~q~~~~pp 393 (436)
T 2hjg_A 321 DYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPP 393 (436)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTT
T ss_pred CCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCcceeEEeEecCCCCCC
Confidence 568999999999999987776665322 133444556777777777777665
No 41
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.60 E-value=0.19 Score=47.86 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcC--CCCCCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 4 KYVTQKWRLERT--VAEGAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 4 ~~~eIr~~l~~t--~~~~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
.++++++++... ....+|++++||++|.||++|++.|.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 325 TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 366 (456)
T ss_dssp HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHH
Confidence 345666555532 2356899999999999999888877653
No 42
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.31 E-value=0.2 Score=40.98 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+++++++...+ ++++++||++|.||++|++.|.+.+
T Consensus 139 ~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 139 VEEAKNRAEQWN---VNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp HHHHHHHHHHHT---CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456777776543 5899999999999999999988654
No 43
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.89 E-value=0.3 Score=40.05 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+++++++.. ..+++++++||++|.||++|++.|.+.+
T Consensus 136 ~~~~~~~~~~--~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 136 TKRAQAWCYS--KNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp HHHHHHHHHH--TTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4556666653 2367999999999999999999988654
No 44
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.77 E-value=0.31 Score=43.96 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=25.3
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
...+++|+||++|.|+++|++.|.++++
T Consensus 154 ~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 154 ELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp TCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 4578999999999999999999998775
No 45
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.72 E-value=0.25 Score=39.59 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.++++++.... ++|++++||++|.||++|++.|.+.+
T Consensus 128 ~~~~~~~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 128 TKQAQDLARSY---GIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp HHHHHHHHHHH---TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34555555544 36899999999999999999988754
No 46
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.50 E-value=0.34 Score=39.20 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+++.+++.... ++|++++||++|.||++|++.|.+.+.
T Consensus 141 ~~~~~~~~~~~---~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 141 YTTAKEFADSL---GIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp HHHHHHHHHHT---TCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35556666654 368999999999999999999987653
No 47
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.46 E-value=0.23 Score=41.16 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.+++.++....+ ..+++++||++|.||++|++.|.+.+.
T Consensus 141 ~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 141 STQGEELRKQIG--AAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp HHHHHHHHHHHT--CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 456666666543 258999999999999999999987653
No 48
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.34 E-value=0.34 Score=40.23 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+++++++... +++++++||++|.||++|++.|.+.+
T Consensus 161 ~~~~~~~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 161 ERQARELADKY---GIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHHHHHT---TCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45667777654 36899999999999999999998754
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.31 E-value=0.33 Score=39.21 Aligned_cols=38 Identities=16% Similarity=0.001 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.+++.+++... +++++++||++|.||++|++.|.+.+.
T Consensus 140 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 140 RNEGLKFARKH---SMLFIEASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp HHHHHHHHHHT---TCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 45666666654 468999999999999999999987653
No 50
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.26 E-value=0.35 Score=39.86 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++++++++... ++|++++||++|.||++|++.|.+.+
T Consensus 133 ~~~~~~~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 133 YDVAKEFADAN---KMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp HHHHHHHHHHT---TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45666666554 46899999999999999999888654
No 51
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.05 E-value=0.35 Score=41.46 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
++|.++|.... +++++.+||++|.||++|.+.|.+.+.
T Consensus 138 ~~e~~~~a~~~---~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 138 IEEGERKAKEL---NVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHHHHHHHHHH---TCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred HHHHhhHHHHh---CCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 56677777765 468999999999999999999987664
No 52
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.85 E-value=0.45 Score=38.60 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.++..++.... +++++++||++|.||++|++.|.+.+.
T Consensus 133 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 133 TREAQAVAQEW---KCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp HHHHHHHHHHH---TCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 34455555543 358999999999999999999998664
No 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.19 E-value=0.28 Score=40.22 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+++++++...+ ++++++||++|.||++|++.|.+.+
T Consensus 133 ~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 133 SERGRQLADHLG---FEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp HHHHHHHHHHHT---CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355666665543 5899999999999998888887643
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.18 E-value=0.3 Score=40.20 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+++++++... +++++++||++|.||++|++.|.+.+
T Consensus 144 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 144 ADQGEALAKEL---GIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp HHHHHHHHHHH---TCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34556666544 35899999999999999999887654
No 55
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.97 E-value=0.48 Score=43.62 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.1
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.|++++||++|+||++|++.|.++++
T Consensus 257 ~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 257 RPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp CCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 579999999999999999999987653
No 56
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.76 E-value=0.47 Score=40.07 Aligned_cols=37 Identities=11% Similarity=-0.059 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 7 TQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 7 eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++++++...+ ..++++++||++|.||++|++.|.+.+
T Consensus 167 ~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 167 LIKQILDNVK-NPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp HHHHHHHHCC-SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCceEEEEecccCCCHHHHHHHHHHHH
Confidence 3445544322 237999999999999999999988654
No 57
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=87.39 E-value=0.48 Score=39.82 Aligned_cols=38 Identities=16% Similarity=-0.030 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.+++++++... +++++++||++|.||++|++.|.+.+.
T Consensus 138 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 138 TEESKTFAQEN---QLLFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp HHHHHHHHHHT---TCEEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc---CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45666776654 469999999999999999999987653
No 58
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=87.32 E-value=0.32 Score=39.72 Aligned_cols=37 Identities=8% Similarity=-0.055 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCC-CCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQL-KYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~-g~nI~~Ll~~L~~~i 44 (283)
.+++++++...+ ++++++||++ |.||++|++.|.+.+
T Consensus 153 ~~~~~~~~~~~~---~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 153 LDMAQDWATTNT---LDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp HHHHHHHHHHTT---CEEEECCC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 467777777654 7999999999 999999999988643
No 59
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=85.40 E-value=1.1 Score=40.15 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.+.++.+..++ .+++|+||++|.|+++|++.|.+.++
T Consensus 137 ~~l~~l~~~~~~--~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 137 PHLQFLASQMNF--LDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp HHHHHHHTTSCC--SEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCc--CceEEEECCCCCCHHHHHHHHHHhCC
Confidence 334444443332 47999999999999999999998665
No 60
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=84.71 E-value=0.64 Score=38.54 Aligned_cols=36 Identities=14% Similarity=-0.005 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+++++++.. .+++++++||++|.||++|++.|.+.+
T Consensus 138 ~~~~~~~~~---~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 138 KLVMEVLKG---KNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp HHHHHHTTT---CCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 334444443 357899999999999999999998755
No 61
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=84.09 E-value=0.56 Score=41.18 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=23.1
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
++|++++||++|.||++|++.|.+.
T Consensus 140 g~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 140 GCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4799999999999999999999974
No 62
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=83.77 E-value=1.2 Score=40.72 Aligned_cols=26 Identities=23% Similarity=0.116 Sum_probs=23.1
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
..|++|+||++|.|+++|++.|.+.+
T Consensus 234 ~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 234 QPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp CCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 63
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=83.53 E-value=0.76 Score=40.84 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.6
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++|++++||++|.||++|++.|.+.+
T Consensus 137 g~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 137 GVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp TSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999754
No 64
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=83.50 E-value=0.59 Score=38.46 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=23.0
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+++++++||++|.||++|++.|.+.+
T Consensus 145 ~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 145 DXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCceEEeccccCCCHHHHHHHHHHHH
Confidence 46899999999999999999988754
No 65
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=83.44 E-value=0.43 Score=42.25 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
++|++++||++|.||++|++.|.+.++
T Consensus 142 g~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 142 GCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp TSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 479999999999999999999997654
No 66
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=82.22 E-value=0.69 Score=37.13 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=27.4
Q ss_pred HHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 8 QKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 8 Ir~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.+++.+.. +++++++||++|.||++|++.|.+.+.
T Consensus 134 ~~~~~~~~---~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 134 VDKLEKIL---GVKVVPLSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp HHHHHHHH---TSCEEECBGGGTBSHHHHHHHHHHHHT
T ss_pred HHHHHHHh---CCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 34444443 369999999999999999999987654
No 67
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=82.22 E-value=0.72 Score=41.58 Aligned_cols=35 Identities=14% Similarity=-0.009 Sum_probs=27.3
Q ss_pred HHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 10 WRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 10 ~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
++++.. +...+++|+||++|.|+++|++.|.+.++
T Consensus 138 ~~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 138 KAYHEL-LPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHT-STTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 333333 34468999999999999999999998664
No 68
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=81.97 E-value=0.91 Score=39.81 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++|++++||++|.||++|++.|.+.+
T Consensus 140 g~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 140 GIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 37999999999999999999998754
No 69
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=81.89 E-value=1.4 Score=42.63 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+++++++. .+.|++++||++|.||++|++.|.+.+
T Consensus 369 ~~~~~~~~----~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 369 EEIKNKLG----TDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp HHHHHHHT----CSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred HHHHHHhc----CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555542 247999999999999999999998754
No 70
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=81.09 E-value=1.9 Score=40.00 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=28.1
Q ss_pred HHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 9 KWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 9 r~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
+++++..++...+++.+||++|.||++|++.|.+.
T Consensus 123 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 123 RYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 34455566655689999999999999999999864
No 71
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=80.12 E-value=1.4 Score=41.59 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 17 AEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 17 ~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
...+|++++||++|.||++|++.|.+.+
T Consensus 326 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 326 IDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp GTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999887643
No 72
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=79.87 E-value=2.4 Score=39.28 Aligned_cols=37 Identities=16% Similarity=0.003 Sum_probs=28.8
Q ss_pred HHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 8 QKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 8 Ir~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++++++..++...+++++||++|.|+++|++.|.++.
T Consensus 124 l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 124 MRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3344556666555899999999999999999998743
No 73
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=79.81 E-value=1.4 Score=40.32 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+++.+++.. .+.|++++||++|+||++|++.|.+.+
T Consensus 299 ~~~~~~~~~---~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 299 KRLEKFVKE---KGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHHHHHH---TTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 344555543 257899999999999999999998754
No 74
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=79.24 E-value=6.7 Score=36.64 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=65.1
Q ss_pred cEEecCceEEEeccc------CC-CccccccccceeeccCCCC--CceeeEEE-EEEEEeeeeccccccCCCccccccCC
Q psy1177 130 QFAVPGGLIGVGTKI------EP-TLCRADRLVGQVLGAVGAL--PKIFIELE-ISYHLLKRLLGVRMEGDKKGAKVQKL 199 (283)
Q Consensus 130 ~~A~aG~rvai~l~l------d~-~i~r~di~rG~vl~~~g~l--~~~~~~~~-a~~~~l~~~~g~~~~~~~~~~~~~pl 199 (283)
..-.-|||-+|++.. +| -+...|.....|+..++.- ....+.+. -++.|+.. .++
T Consensus 248 ~~yTiGQr~gl~i~~~~~~~~~p~~V~~~d~~~n~v~v~~~~~~~~l~~~~~~~~~~~w~~~---------------~~~ 312 (380)
T 2der_A 248 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDR---------------EPF 312 (380)
T ss_dssp TTCCTTCCTTSCCCCCSSSTTCCEEEEEEETTTTEEEEEESTTCTTTCEEEEEEEEEEETTC---------------CCC
T ss_pred eeeeecccccCCcCcccCCCCccEEEEEEecCCCEEEEECCCChHHhccCEEEEeccEECCC---------------CCC
Confidence 334567776665432 11 2344466666766553221 11223454 34788751 222
Q ss_pred CCCcEEEEEE--ecceeeEEEEEecCCeEEEEeCCeEec-ccCCEEEEEeecCCCcEEEE-EEEe
Q psy1177 200 TRNEVLLVNI--GSLSTGGRVLATKADLAKISLTNPVCT-EVNEKIALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 200 ~~~~~~~l~~--gt~~v~~~v~~~~~~~~~l~L~~Pv~~-~~gdr~ii~R~~~~~~~tiG-G~v~ 260 (283)
...-.+.+.+ ....+.|+|..++++.+.+.|++|.-+ .+||-.++= .. -+.+| |+|.
T Consensus 313 ~~~~~~~~k~r~~~~~~~~~~~~~~~~~~~v~~~~p~~~v~pGQ~~v~Y--~~--~~~lggg~i~ 373 (380)
T 2der_A 313 TGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--NG--EVCLGGGIIE 373 (380)
T ss_dssp CSEEEEEEESSTTCCCEEEEEECCSSSCEEEEEEEEESCCCTTSEEEEE--ET--TEEEEEEEEE
T ss_pred CCceEEEEEEccCCCCccEEEEEecCCEEEEEECCCCcCcCCCceEEEE--eC--CEEEEEEEEe
Confidence 2223344443 455688888777777899999999855 699999973 22 37888 7764
No 75
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=77.72 E-value=1.8 Score=38.74 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHh
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
++++++++...-. .+++++||++|.||++|.+.+..
T Consensus 134 ~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 134 RKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 3455665543222 79999999999999999987764
No 76
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=77.63 E-value=2.9 Score=38.37 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=23.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+.|++++||++|.|+++|+++|.+.+
T Consensus 252 ~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 252 KPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEecCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998753
No 77
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=77.62 E-value=1.8 Score=38.82 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHh
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
.++..++++.. +.+++++||++|.|+++|.+.+..
T Consensus 131 ~~~~~~~~~~~---g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 131 LERWISIYRDA---GYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HHHHHHHHHHT---TCEEEECCTTTCTTHHHHHHHTTT
T ss_pred HHHHHHHHHHC---CCeEEEEECCCCCCHHHHHhhccC
Confidence 34455555554 358999999999999999887763
No 78
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=77.11 E-value=2.3 Score=40.32 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.++++++++.. +.+++++||++++||++|++.|.+.+
T Consensus 287 ~~~l~~~l~~~---g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 287 VKALADALARE---GLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp HHHHHHHHHTT---TSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCeEEEEECCCccCHHHHHHHHHHHH
Confidence 44555555442 57899999999999999999998765
No 79
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=76.44 E-value=1.5 Score=38.35 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
++|++|+||++|.||++|++.|.+.+
T Consensus 139 g~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 139 GVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp SSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999998754
No 80
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=75.90 E-value=0.71 Score=37.90 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=24.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIP 47 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p 47 (283)
+++++++||++|.||++|++.|.+.+...
T Consensus 160 ~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 160 GATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp TCEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 57899999999999999999998765543
No 81
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=75.24 E-value=1.6 Score=42.16 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=24.0
Q ss_pred CcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 20 APVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.|++++||++|.||++|++.|.+.+.
T Consensus 372 ~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHh
Confidence 68999999999999999999998765
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=74.54 E-value=1.2 Score=37.17 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+++++++||++|.||++|++.|.+.+
T Consensus 148 ~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 148 NLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp TCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 83
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=73.84 E-value=14 Score=34.41 Aligned_cols=109 Identities=11% Similarity=0.056 Sum_probs=63.2
Q ss_pred EecCceEEEeccc------CC-CccccccccceeeccCCCCC--ceeeEEE-EEEEEeeeeccccccCCCccccccCCCC
Q psy1177 132 AVPGGLIGVGTKI------EP-TLCRADRLVGQVLGAVGALP--KIFIELE-ISYHLLKRLLGVRMEGDKKGAKVQKLTR 201 (283)
Q Consensus 132 A~aG~rvai~l~l------d~-~i~r~di~rG~vl~~~g~l~--~~~~~~~-a~~~~l~~~~g~~~~~~~~~~~~~pl~~ 201 (283)
-.-|||-+|++.. +| -+...|.....|+..++.-. ...+.+. -.+.|+.. .++..
T Consensus 242 yTiGQr~gl~i~~~~~~~~~p~~V~~~d~~~n~v~v~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~~~ 306 (376)
T 2hma_A 242 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE---------------MPEEF 306 (376)
T ss_dssp CCTTCBSCTTTTC----CCSCEEEEEEEGGGTEEEEEESTTCGGGEEEEEEEEEEEESSC---------------CCSSE
T ss_pred eccCcccccCCCcccCCCCceEEEEEEecCCCEEEEEcCCChHHhccceEEeecceecCC---------------CCCCC
Confidence 3467777776532 11 13344666677665533221 1223443 34778751 12222
Q ss_pred CcEEEEE--EecceeeEEEEEecCCeEEEEeCCeEec-ccCCEEEEEeecCCCcEEEE-EEEe
Q psy1177 202 NEVLLVN--IGSLSTGGRVLATKADLAKISLTNPVCT-EVNEKIALSRRVEKHWSWIE-GTVS 260 (283)
Q Consensus 202 ~~~~~l~--~gt~~v~~~v~~~~~~~~~l~L~~Pv~~-~~gdr~ii~R~~~~~~~tiG-G~v~ 260 (283)
.-.+.+. .....+.|+|..+ .+.+.+.|++|.-+ .+||-.++= .. -+.+| |+|.
T Consensus 307 ~~~~~~k~r~~~~~~~~~~~~~-~~~~~v~~~~~~~~v~pGQ~~v~Y--~~--~~~lggg~i~ 364 (376)
T 2hma_A 307 TLECTAKFRYRQPDSKVTVHVK-GEKTEVIFAEPQRAITPGQAVVFY--DG--EECLGGGLID 364 (376)
T ss_dssp EEEEEEESSTTSCCEEEEEEEC-SSCEEEEEEEEEECCCTTSEEEEE--ET--TEEEEEEEEE
T ss_pred CeEEEEEEccCCCCCCEEEEEe-CCEEEEEeCCCCCCCCCCceEEEE--eC--CEEEeeEEEe
Confidence 2233333 3455678888766 66899999999865 699999973 22 37888 7774
No 84
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=70.44 E-value=1.1 Score=42.66 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=25.6
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhCCCC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKIPIP 47 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i~~p 47 (283)
+++++++||++|.||++|++.|.+.++.+
T Consensus 169 g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 169 EAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp TCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 46999999999999999999999887543
No 85
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=70.26 E-value=6.4 Score=35.82 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+.|++++||++|.|+++|++.|.+..
T Consensus 234 ~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 234 TPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998754
No 86
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=67.91 E-value=4.4 Score=38.07 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.9
Q ss_pred cEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 21 PVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 21 piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+++++||++|.|+++|++.|.+.++
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred CeEEEeCcCCCChHHHHHHHHHhcC
Confidence 7899999999999999999998665
No 87
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=67.84 E-value=4.9 Score=32.65 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.++.++++... +++++.+||+++.|+++|++.|.+.+
T Consensus 130 ~~~a~~l~~~~---~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKN---NLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHT---TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35566776654 46899999999999999998887654
No 88
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=67.62 E-value=3.5 Score=39.54 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.8
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 18 EGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 18 ~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
...|++++||++|.||++|++.|.+.+.
T Consensus 356 ~~~~~i~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 356 NITQIVHTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp TCCCEEEEBTTTTBSHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999998664
No 89
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=67.57 E-value=2.4 Score=40.98 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
.+++++++... +.|++++||++|.||++|++.|.+.+.
T Consensus 170 ~~~~~~~~~~~---~~~~~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 170 QKKINERFPAI---ENRFHRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp HHHHHHHCGGG---TTCEEECCC-----CTTHHHHHHHHHT
T ss_pred HHHHHHHHHhc---CCceEEEecCcccCHHHHHHHHHHHHh
Confidence 34555655543 468999999999999999999987654
No 90
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=65.56 E-value=3.2 Score=39.08 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.2
Q ss_pred cEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 21 PVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 21 piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+++++||++|.|+++|++.|.+.++
T Consensus 141 ~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 141 EPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp SCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CEEEEeccCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999987654
No 91
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=61.58 E-value=9.3 Score=33.98 Aligned_cols=39 Identities=8% Similarity=-0.239 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 4 KYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 4 ~~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
..++++++.+..++.+++++++||++ .|+.+++..+...
T Consensus 140 ~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 140 MMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp HHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHH
Confidence 34677788888877789999999999 7887777666653
No 92
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=59.83 E-value=9.6 Score=33.78 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 7 TQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 7 eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
+..++++.. +.+++++||.+|.|+++|++.|.+.+
T Consensus 70 ~~~~~~~~~---g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 70 QWKEHFENQ---GIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHHHHHHTT---TCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHHHHhc---CCcEEEEECCCcccHHHHHHHHHHHH
Confidence 334555432 45899999999999999998887644
No 93
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=58.14 E-value=3.7 Score=35.85 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 7 TQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 7 eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+|++.+.. .+++++++||.+++|+++|.+.|.+.+|
T Consensus 168 ~i~~~l~~---~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 168 QIMKEIQE---HKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHH---TTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHH---cCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 44455544 3577999999999999999999987543
No 94
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=52.50 E-value=20 Score=33.83 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=29.7
Q ss_pred HHHHHHHH----hcCCCCCCcEEEeec--CCCCCHHHHHHHHHhhCCC
Q psy1177 5 YVTQKWRL----ERTVAEGAPVIPISA--QLKYNIEVLCEYITKKIPI 46 (283)
Q Consensus 5 ~~eIr~~l----~~t~~~~~piIpvSA--~~g~nI~~Ll~~L~~~i~~ 46 (283)
.+.|+++. ...+.+...+|++|+ +.+.|+++|++.|.+.+|.
T Consensus 206 ~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 206 LQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 34455553 232344568999999 7777899999999987763
No 95
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=48.28 E-value=4 Score=36.50 Aligned_cols=36 Identities=6% Similarity=-0.071 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhhC
Q psy1177 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44 (283)
Q Consensus 5 ~~eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~i 44 (283)
.+++++++... +++++++||++| |++++.+.|.+.+
T Consensus 177 ~~~~~~~~~~~---~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 177 KKRILDEIEEH---NIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHT---TCCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHc---CCeEEecCCccc-cccHHHHHHHHHh
Confidence 45777887765 478999999999 9998888777654
No 96
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=46.07 E-value=3.3 Score=35.99 Aligned_cols=23 Identities=9% Similarity=-0.068 Sum_probs=21.1
Q ss_pred CcEEEeecCCCCCHHHHHHHHHh
Q psy1177 20 APVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 20 ~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
.+++++||++|.|+++|++.|.+
T Consensus 227 ~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 227 IGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp EECCCCCCBCTTSCBCHHHHHHH
T ss_pred EEEECCChhhccccccHHHHHHH
Confidence 58999999999999999999876
No 97
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=44.14 E-value=20 Score=33.71 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.1
Q ss_pred cEEEeecCCCCCHHHHHHHHHhhCC
Q psy1177 21 PVIPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 21 piIpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+.+++||.+|.|+++|++.+.+.++
T Consensus 160 ~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 160 EPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp SEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred ceEEeecccccchHHHHHHHHhhcc
Confidence 5689999999999999999987654
No 98
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=37.64 E-value=2.8 Score=35.91 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=20.6
Q ss_pred EEeecCCCCCHHHHHHHHHhhCC
Q psy1177 23 IPISAQLKYNIEVLCEYITKKIP 45 (283)
Q Consensus 23 IpvSA~~g~nI~~Ll~~L~~~i~ 45 (283)
+++||++|.|+++|++.|.+.++
T Consensus 185 ~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 185 RAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHH
Confidence 89999999999999999987653
No 99
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=34.89 E-value=23 Score=30.90 Aligned_cols=33 Identities=9% Similarity=-0.046 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCCCcEEEeecCCCCCHHHHHHHHHhh
Q psy1177 7 TQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKK 43 (283)
Q Consensus 7 eIr~~l~~t~~~~~piIpvSA~~g~nI~~Ll~~L~~~ 43 (283)
+..++++.. +.|+ ++||.+|.|+++|++.|.+.
T Consensus 66 ~~~~~~~~~---g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 66 KWVEFFKKQ---GKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHHHHT---TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHHHHc---CCeE-EEECCCCcCHHHHHHHHHHh
Confidence 344555543 4577 99999999999999988763
No 100
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=28.72 E-value=28 Score=34.88 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=23.1
Q ss_pred CCCcEEEeecC--------------CCCCHHHHHHHHHhhC
Q psy1177 18 EGAPVIPISAQ--------------LKYNIEVLCEYITKKI 44 (283)
Q Consensus 18 ~~~piIpvSA~--------------~g~nI~~Ll~~L~~~i 44 (283)
.+.+++++||+ +|.|+++|.++|.+.+
T Consensus 283 ~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 283 YDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp GGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 45689999999 9999999999888654
No 101
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=26.49 E-value=44 Score=30.83 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.6
Q ss_pred CCcEEEeecCCCCCHHHHHHHH
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYI 40 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L 40 (283)
+.+++++||.+|.|++.|...+
T Consensus 192 G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 192 GYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TCCEEECBTTTTBTHHHHHHHH
T ss_pred CCcEEEEecCCCcCHHHHHHhc
Confidence 3479999999999999887755
No 102
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=23.87 E-value=5.6 Score=37.25 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=19.9
Q ss_pred CCcEEEeecCCCCCHHHHHH-HHHhhC
Q psy1177 19 GAPVIPISAQLKYNIEVLCE-YITKKI 44 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~-~L~~~i 44 (283)
++++||+||+.+.||++|++ .|.+++
T Consensus 243 ~~~vv~iSA~~e~~l~~L~~~~l~~~~ 269 (397)
T 1wxq_A 243 GYIVIPTSAAAELTLRKAAKAGFIEYI 269 (397)
T ss_dssp TCEEEEECHHHHHHHHSCSSSCCCCSC
T ss_pred CCcEEEEeccchhhHHHHHhhhhhhhc
Confidence 47999999999999987765 444433
No 103
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=23.60 E-value=9.3 Score=39.20 Aligned_cols=24 Identities=8% Similarity=-0.121 Sum_probs=21.0
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHh
Q psy1177 19 GAPVIPISAQLKYNIEVLCEYITK 42 (283)
Q Consensus 19 ~~piIpvSA~~g~nI~~Ll~~L~~ 42 (283)
-++++|+||++|.|+++|+++|.+
T Consensus 251 ~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 251 YIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp EEECCCCCCEESSSSEEHHHHHHH
T ss_pred CCceEEecccccccchhHHHHHHH
Confidence 358999999999999999888875
No 104
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=22.00 E-value=33 Score=31.27 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCCCCcEEEeecCCCCC---HHHHHHHHHhhCC
Q psy1177 6 VTQKWRLERTVAEGAPVIPISAQLKYN---IEVLCEYITKKIP 45 (283)
Q Consensus 6 ~eIr~~l~~t~~~~~piIpvSA~~g~n---I~~Ll~~L~~~i~ 45 (283)
+++++++... ++|++++||++|.| +..|.+.|.+.+|
T Consensus 197 ~~i~~~~~~~---~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 197 KRILDEIEEH---NIKIYHLPDAESDEDEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHTTCC----CCSCCCC---------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHC---CCCEEeCCCcCCCcchhHHHHHHHHHhcCC
Confidence 4666666554 57899999999987 2345555554443
No 105
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=20.93 E-value=94 Score=25.84 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=18.7
Q ss_pred CcceEEEEEEEeeEeeCCCEEEEe
Q psy1177 75 LKGGVAGGSILRGVLKVGMEIEVR 98 (283)
Q Consensus 75 ~rGtVvtGtv~sG~l~vGD~v~i~ 98 (283)
.+.++..=-+..|.|++||+|++.
T Consensus 159 ~r~G~~~rVl~~G~I~~GD~v~l~ 182 (195)
T 1oru_A 159 GIRGIVCIVERPGAVYTGDEIEVH 182 (195)
T ss_dssp TSSCEEEEEEECEEEETTCEEEEE
T ss_pred CCccEEEEEecCceEcCCCEEEEE
Confidence 345566666678999999999986
Done!