RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1177
(283 letters)
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 348 bits (894), Expect = e-119
Identities = 107/241 (44%), Positives = 152/241 (63%), Gaps = 6/241 (2%)
Query: 12 LERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCE 71
+E TVAE AP+IPISA NI+VL + I IP P RD P+++V+RSFDVNKPG
Sbjct: 166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTP 225
Query: 72 VDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQF 131
+ L GGV GSI++G LKVG EIE+RPG V + G++ +PI + IVSL A ++
Sbjct: 226 PEKLVGGVLDGSIVQGKLKVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEE 284
Query: 132 AVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDK 191
A PGGL+GVGTK++P L + D + G V+G G LP ++ L + HLL+R++G
Sbjct: 285 AYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTE----- 339
Query: 192 KGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKH 251
+ KV+ + R EVLL+N+G+ T G V D ++ L PVC E +++A+SR++
Sbjct: 340 QELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGSR 399
Query: 252 W 252
W
Sbjct: 400 W 400
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 342 bits (880), Expect = e-117
Identities = 95/242 (39%), Positives = 148/242 (61%), Gaps = 7/242 (2%)
Query: 12 LERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCE 71
+ T AE P+IP+SA K NI+ L E I + I P RD + P ++VIRSFDVNKPG +
Sbjct: 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQ 217
Query: 72 VDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQF 131
++LKGGV GGSI++G+ KV EI+V PGL + +GK++ +PIF++I S+ E +
Sbjct: 218 FNELKGGVIGGSIIQGLFKVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKE 276
Query: 132 AVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDK 191
A PGGL+ +GT ++P+L +AD L+G ++ A + + I Y+LL+R++G K
Sbjct: 277 AKPGGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGA-----K 331
Query: 192 KGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNE-KIALSRRVEK 250
+ KV + E L++++GS +T G V + K D ++ L PV N + +SR++
Sbjct: 332 EMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAG 391
Query: 251 HW 252
W
Sbjct: 392 RW 393
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 340 bits (873), Expect = e-116
Identities = 110/241 (45%), Positives = 160/241 (66%), Gaps = 6/241 (2%)
Query: 12 LERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCE 71
++ T+AE AP+IPISA + NI+VL + I IP P RD ++PR+ V RSFD+NKPG E
Sbjct: 164 VKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTE 223
Query: 72 VDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQF 131
+ DLKGGV GG+I++GV KVG EIE+RPG+ + K KP+ ++IVSL A L+
Sbjct: 224 IKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTE-GNKTFWKPLTTKIVSLAAGNTILRK 282
Query: 132 AVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDK 191
A PGGLIGVGT ++P L ++D L G V+G G LP I ++ I +LL R++G +
Sbjct: 283 AHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTK----- 337
Query: 192 KGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKH 251
+ K++ L EVL++NIG+ +T G + + + D+A I L P+C E+ +++A+SRRV
Sbjct: 338 EELKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPICAEIGDRVAISRRVGSR 397
Query: 252 W 252
W
Sbjct: 398 W 398
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 47.4 bits (113), Expect = 3e-06
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 18 EGAPVIPISAQLKYNIEVLCEYITKKI--PIPIRDFTSSPRLIVIRSFDVNKPGCEVDDL 75
+ + +IPISA+ + ++ L I + IR+ S ++ + +F + G
Sbjct: 161 KNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPI--KG------ 212
Query: 76 KGGVAGGSILRGVLKVGMEIEVRP 99
G V G+I +G++KVG E++V P
Sbjct: 213 AGTVVTGTINKGIVKVGDELKVLP 236
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 46.0 bits (110), Expect = 7e-06
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 12 LERTVAEGAPVIPISAQLKYN--------IEVLCEYITKKIPIPIRDFTSSP-RLIVIRS 62
TV + I ++ ++ + +KI + S P R+ + +
Sbjct: 141 TSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHA 200
Query: 63 FDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRP 99
F+V G KG V G + +G+ K + ++ P
Sbjct: 201 FNV--TG------KGCVVLGVVKQGISKDKDKTKIFP 229
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.010
Identities = 41/225 (18%), Positives = 67/225 (29%), Gaps = 66/225 (29%)
Query: 15 TVAEGA--PVIPISAQLKYNIEVLCEYITKKIPIPIRDF------TSSPRLI------VI 60
T++ G+ V+ + + L E K +P P F T+ L+ V
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 61 RSFDVNKPGCEVDDLKGGVAG--GSILRG----VLKVGMEIEVRPGLVSKDSEGK----- 109
+ +K G L + L G L + E LV K
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 110 --LTCKPIFSRIVS-LF--AEQNELQ-FAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVG 163
+ +P + S LF + Q A+ G GQ G
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--------------------GQ-----G 164
Query: 164 ALPKIFIEL-EI--SYH-LLKRLLGVRMEGDKKGAKVQKLTRNEV 204
F EL ++ +YH L+ L+ + +L R +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLI------KFSAETLSELIRTTL 203
Score = 28.5 bits (63), Expect = 3.0
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 34/131 (25%)
Query: 23 IPISA-QLKYNIEVLCEYITKKIPI--PIRDFTSS---PRLIVIRSFDVNKPGCEVD--D 74
IP S +LK++ L P+ P F S P +I D+ K + D
Sbjct: 407 IPFSERKLKFSNRFL--------PVASP---FHSHLLVPASDLINK-DLVKNNVSFNAKD 454
Query: 75 LKGGV---AGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQF 131
++ V GS LR + + +V D + P+ + F + L F
Sbjct: 455 IQIPVYDTFDGSDLRV-----LSGSISERIV--DC---IIRLPVKWETTTQFKATHILDF 504
Query: 132 AVPGGLIGVGT 142
PGG G+G
Sbjct: 505 G-PGGASGLGV 514
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 35.3 bits (81), Expect = 0.024
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 18 EGAPVIPISAQLKYN--------IEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDV-NKP 68
+ P++ SA I L ++ IP P R P L+ I DV +
Sbjct: 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-IDKPFLLPIE--DVFSIS 506
Query: 69 GCEVDDLKGGVAGGSILRGVLKVGMEIEV 97
G +G V G + RG++KVG E+E+
Sbjct: 507 G------RGTVVTGRVERGIIKVGEEVEI 529
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 32.9 bits (76), Expect = 0.089
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 18 EGAPVIPISAQLKYN----------IEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDV-N 66
E P+I SA ++ L + + IP+P RD P L+ + V +
Sbjct: 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRD-LEKPFLLPVE--SVYS 213
Query: 67 KPGCEVDDLKGGVAGGSILRGVLKVGMEIEV 97
PG +G V G++ RG+LK G E E
Sbjct: 214 IPG------RGTVVTGTLERGILKKGDECEF 238
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.11
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 10/33 (30%)
Query: 2 QVKYVTQKWRLERTV----AEGAPVIPISAQLK 30
+K +L+ ++ + AP + I A ++
Sbjct: 21 ALK------KLQASLKLYADDSAPALAIKATME 47
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 32.3 bits (74), Expect = 0.18
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 18 EGAPVIPISAQLKYNIEVLCEYITKKIP----IPIRD--FTSSPRLIVIRSFDVNKP 68
A V+ +SA K + + + I++ +P IP +I++ D+ P
Sbjct: 168 YEAKVLLVSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAP 224
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 31.8 bits (73), Expect = 0.21
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 33 IEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDV-NKPGCEVDDLKGGVAGGSILRGVLKV 91
I L + I + IP P+RD P L+ + DV G +G VA G I RG +KV
Sbjct: 199 IWELLDAIDEYIPTPVRD-VDKPFLMPVE--DVFTITG------RGTVATGRIERGKVKV 249
Query: 92 GMEIEV 97
G E+E+
Sbjct: 250 GDEVEI 255
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 30.5 bits (70), Expect = 0.57
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 20 APVIPISAQLKYNIEVLCEYITKKIP 45
++PISA+ N++ + + K +P
Sbjct: 149 LDIVPISAETGLNVDTIAAIVRKHLP 174
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 30.1 bits (69), Expect = 0.74
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 20 APVIPISAQLKYNIEVLCEYITKKIP 45
++PISA N++ L + I K +P
Sbjct: 156 TEIVPISALKGANLDELVKTILKYLP 181
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function,
protein structure INI secsg, conserved hypothetical
protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP:
b.43.3.1
Length = 116
Score = 28.5 bits (64), Expect = 1.0
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 15/63 (23%)
Query: 78 GVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGL 137
V G++ G++ VG +++ G+ IV + + +++FA+ G
Sbjct: 49 DVIIGTVESGMIGVGFKVKGPSGI---------------GGIVRIERNREKVEFAIAGDR 93
Query: 138 IGV 140
IG+
Sbjct: 94 IGI 96
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 29.3 bits (67), Expect = 1.2
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 20 APVIPISAQLKYNIEVLCEYITKKIP 45
A +SA + + L + +P
Sbjct: 147 AEPRMLSALDERQVAELKADLLALMP 172
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 28.7 bits (64), Expect = 2.3
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 13/110 (11%)
Query: 17 AEGAP-VIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVD-- 73
+ G+P IP +A L + +E+ + G V+
Sbjct: 135 SAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRI-QTRGEGYAKPNEGAIVEVA 193
Query: 74 ---DLKGGVAGGSILRGVLKVGMEIEVRPGL------VSKDSEGKLTCKP 114
K + LR + G +++ GL + K + KP
Sbjct: 194 LEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKP 243
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 28.6 bits (65), Expect = 3.0
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 22 VIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81
+ SA+ ++ + E + + IP P D + ++I S+ D+ G V+
Sbjct: 158 AVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSW--------FDNYLGVVSL 209
Query: 82 GSILRGVLKVGMEIEV 97
I G L+ G +++V
Sbjct: 210 IRIKNGTLRKGDKVKV 225
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 28.2 bits (64), Expect = 3.4
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 22 VIPISAQLKYNIEVLCEYITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAG 81
I SA+ IE + E I +IP P D + ++ S+ D +G VA
Sbjct: 160 AILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSY--------YDPYRGAVAF 211
Query: 82 GSILRGVLKVGMEI 95
I G +K G +I
Sbjct: 212 VRIFDGEVKPGDKI 225
>3hup_A Early activation antigen CD69; C-type lectin-like domain, disulfide
bond, glycoprotein, LEC membrane, phosphoprotein,
signal-anchor, transmembrane; 1.37A {Homo sapiens} PDB:
1e87_A 1e8i_A 3cck_A
Length = 130
Score = 27.0 bits (60), Expect = 3.6
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 242 IALSRRVEKHWSWIEGT 258
+ L + W W G
Sbjct: 74 VGLKKEPGHPWKWSNGK 90
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 27.9 bits (63), Expect = 4.0
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 12 LERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
++ + ++ ISA +E L E I ++
Sbjct: 371 IKNKLGTDRHMVKISALKGEGLEKLEESIYRET 403
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A;
translation termination, peptide release, PTC, P
biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo
sapiens}
Length = 204
Score = 27.1 bits (61), Expect = 5.4
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 77 GGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGG 136
G V G + G + G ++ + P K + ++ + ++ E PG
Sbjct: 19 GTVVLGKLESGSICKGQQLVMMP--------NKHNVE-----VLGILSDDVETDTVAPGE 65
Query: 137 LIGVGTK 143
+ + K
Sbjct: 66 NLKIRLK 72
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 26.9 bits (60), Expect = 6.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 20 APVIPISAQLKYNIEVLCEYITKKIP 45
IPISA+ NIE L I + I
Sbjct: 158 KVFIPISAKFGDNIERLKNRIFEVIR 183
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC, hydrolase;
HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 26.8 bits (60), Expect = 6.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 223 ADLAKISLTNPVCTEVNEK 241
DLA++SL NP V+EK
Sbjct: 217 KDLARLSLKNPEYVWVHEK 235
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural
killer cell receptor, lectin, C-type lectin, immune
system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Length = 199
Score = 26.9 bits (59), Expect = 6.7
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 242 IALSRRVEKHWSWIEGT 258
+ L + W W G
Sbjct: 143 VGLKKEPGHPWKWSNGK 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,203,704
Number of extensions: 253912
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 35
Length of query: 283
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 191
Effective length of database: 4,133,061
Effective search space: 789414651
Effective search space used: 789414651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)