RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1177
(283 letters)
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 125 bits (315), Expect = 6e-37
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 49 RDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEG 108
RD ++PR+ V RSFD+NKPG E+ DLKGGV GG+I++GV KVG EIE+RPG+ +
Sbjct: 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTE-GN 59
Query: 109 KLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALP 166
K KP+ ++IVSL A L+ A PGGLIGVGT ++P L ++D L G V+G G LP
Sbjct: 60 KTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLP 117
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 124 bits (311), Expect = 2e-36
Identities = 59/122 (48%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 47 PIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDS 106
P RD P+++V+RSFDVNKPG + L GGV GSI++G LKVG EIE+RPG+ +
Sbjct: 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGV-PYEE 59
Query: 107 EGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALP 166
G++ +PI + IVSL A ++ A PGGL+GVGTK++P L + D + G V+G G LP
Sbjct: 60 HGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLP 119
Query: 167 KI 168
+
Sbjct: 120 PV 121
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 120 bits (303), Expect = 3e-35
Identities = 53/113 (46%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 49 RDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEG 108
RD + P ++VIRSFDVNKPG + ++LKGGV GGSI++G+ KV EI+V PGL + +G
Sbjct: 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVE-KQG 59
Query: 109 KLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGA 161
K++ +PIF++I S+ E + A PGGL+ +GT ++P+L +AD L+G ++
Sbjct: 60 KVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITL 112
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 90
Score = 110 bits (276), Expect = 2e-31
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 168 IFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAK 227
I ++ I +LL R++G K+ K++ L EVL++NIG+ +T G + + + D+A
Sbjct: 1 IREKITIRANLLDRVVGT-----KEELKIEPLRTGEVLMLNIGTATTAGVITSARGDIAD 55
Query: 228 ISLTNPVCTEVNEKIALSRRVEKHWSWI 255
I L P+C E+ +++A+SRRV W I
Sbjct: 56 IKLKLPICAEIGDRVAISRRVGSRWRLI 83
>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 89
Score = 108 bits (273), Expect = 6e-31
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 171 ELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISL 230
L + HLL+R++G ++ KV+ + R EVLL+N+G+ T G V D ++ L
Sbjct: 3 SLRLEVHLLERVVGT-----EQELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKL 57
Query: 231 TNPVCTEVNEKIALSRRVEKHWSWI 255
PVC E +++A+SR++ W I
Sbjct: 58 QIPVCAEPGDRVAISRQIGSRWRLI 82
>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 108 bits (271), Expect = 1e-30
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 163 GALPKIFIELEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK 222
+P + + I Y+LL+R++G K+ KV + E L++++GS +T G V + K
Sbjct: 1 AEVP-VLWNIRIKYNLLERVVGA-----KEMLKVDPIRAKETLMLSVGSSTTLGIVTSVK 54
Query: 223 ADLAKISLTNPVCTEVNE-KIALSRRVEKHWSWI 255
D ++ L PV N + +SR++ W I
Sbjct: 55 KDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMI 88
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 38.4 bits (88), Expect = 4e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 12 LERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45
+E TVAE AP+IPISA NI+VL + I IP
Sbjct: 161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 194
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 38.4 bits (88), Expect = 4e-04
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 12 LERTVAEGAPVIPISAQLKYNIEVLCEYITKKIPIP 47
+ T AE P+IP+SA K NI+ L E I + I P
Sbjct: 169 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 204
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 34.7 bits (78), Expect = 0.005
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 18 EGAPVIPISAQLKYNIEVLCEYITKKIPIP 47
+ + +IPISA+ + ++ L I +
Sbjct: 147 KNSSIIPISAKTGFGVDELKNLIITTLNNA 176
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 32.4 bits (72), Expect = 0.035
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 8 QKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45
++ + E IP+SA+ N++ + E I KK+
Sbjct: 127 REVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 164
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 31.6 bits (70), Expect = 0.056
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45
+ + + + ++PISA+ N++ + + K +P
Sbjct: 127 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 171
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 31.3 bits (69), Expect = 0.067
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 18 EGAPVIPISAQLKYNIEVLCEYITKKI 44
G +I +SA+ ++VL ++ + +
Sbjct: 135 NGHALIRLSARTGEGVDVLRNHLKQSM 161
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 30.7 bits (68), Expect = 0.11
Identities = 4/44 (9%), Positives = 12/44 (27%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
+ + L + SA ++ ++ K +
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
{Thermus thermophilus [TaxId: 274]}
Length = 100
Score = 29.9 bits (67), Expect = 0.12
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 21/120 (17%)
Query: 47 PIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDS 106
P+RD + V F + G VA G I RG +KVG E+E+ V
Sbjct: 1 PVRDVDKPFLMPVEDVFTITGRGT--------VATGRIERGKVKVGDEVEI----VGLAP 48
Query: 107 EGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGALP 166
E + T + + + LQ + G +GV + + R + GQVL G++
Sbjct: 49 ETRKT------VVTGVEMHRKTLQEGIAGDNVGVLLR---GVSREEVERGQVLAKPGSIT 99
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.9 bits (68), Expect = 0.12
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 20 APVIPISAQLKYNIEVLCEYITKKIP 45
A +SA + + L + +P
Sbjct: 145 AEPRMLSALDERQVAELKADLLALMP 170
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 30.4 bits (67), Expect = 0.12
Identities = 4/44 (9%), Positives = 13/44 (29%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
+ + + S + N+ + +Y+ +K
Sbjct: 119 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 30.7 bits (68), Expect = 0.13
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
M V ++Q +L + A + E++ ++
Sbjct: 132 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 30.3 bits (67), Expect = 0.14
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 8 QKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKK 43
+ ++ + ++ ISA +E L E I ++
Sbjct: 124 NEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRE 159
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 30.1 bits (66), Expect = 0.21
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 2 QVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
+ + R + +I S++ K + I K I
Sbjct: 151 KWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 30.0 bits (66), Expect = 0.22
Identities = 5/44 (11%), Positives = 14/44 (31%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
M +T K L + A + ++++ ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 29.9 bits (66), Expect = 0.24
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 11 RLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45
+ + + PV PISA + + L + ++
Sbjct: 138 AFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 172
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.7 bits (65), Expect = 0.27
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
+ K + +K L IS + K NI++ +++ +
Sbjct: 120 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 29.7 bits (65), Expect = 0.27
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45
IPISA+ NIE L I + I
Sbjct: 156 DKVFIPISAKFGDNIERLKNRIFEVIR 182
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.8 bits (63), Expect = 0.48
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45
I SA+ YN++ L + +P
Sbjct: 136 NVMFIETSAKAGYNVKQLFRRVAAALP 162
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.9 bits (63), Expect = 0.48
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
+ T+ +R + + +P+I SA +NI+ + + +
Sbjct: 138 KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 181
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.5 bits (62), Expect = 0.59
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 18 EGAPVIPISAQLKYNIEVLCEYITKKI 44
+ SA ++ E++ + +
Sbjct: 139 RKWQIFKTSATKGTGLDEAMEWLVETL 165
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.5 bits (62), Expect = 0.61
Identities = 4/44 (9%), Positives = 15/44 (34%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
+ + + L+ + + SA ++ +++ I
Sbjct: 119 LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 28.5 bits (62), Expect = 0.65
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKIPI 46
G SA+ N+ + I +KIP+
Sbjct: 142 GLLFFETSAKTGENVNDVFLGIGEKIPL 169
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.0 bits (61), Expect = 0.77
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45
A + SA+ NI L I+++IP
Sbjct: 140 HAIFVETSAKNAININELFIEISRRIP 166
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 27.6 bits (60), Expect = 1.1
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
+ V+++ L ++ SA I +++ I
Sbjct: 134 LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 27.7 bits (60), Expect = 1.4
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 9 KWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45
K + EG V+P+SA + L E + +
Sbjct: 132 KALADALAREGLAVLPVSALTGAGLPALKEALHALVR 168
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.3 bits (59), Expect = 1.4
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
+ + V + + + G P I SA+ + +E + ++I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 27.7 bits (61), Expect = 1.4
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 10/41 (24%)
Query: 17 AEGAPVIPISA----------QLKYNIEVLCEYITKKIPIP 47
E P+I SA +++ L + + IP+P
Sbjct: 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 27.4 bits (59), Expect = 1.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKI 44
I SA L +N++ L E + ++I
Sbjct: 136 DCKFIETSAALHHNVQALFEGVVRQI 161
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 27.2 bits (59), Expect = 1.7
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
M+ + +K L R V P A + ++T
Sbjct: 129 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.1 bits (59), Expect = 1.8
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
+ + V + L+ I SA+ ++ E + +KI
Sbjct: 125 KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 26.0 bits (57), Expect = 1.9
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 23/104 (22%)
Query: 64 DVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLF 123
DV K G G V G + GV+K GM + P +T + + S+
Sbjct: 10 DVYKIG-----GIGTVPVGRVETGVIKPGMVVTFAP--------AGVTTE-----VKSVE 51
Query: 124 AEQNELQFAVPGGLIGVGTK-IEPTLCRADRLVGQVLGAVGALP 166
+L+ VPG +G K + R G V G P
Sbjct: 52 MHHEQLEQGVPGDNVGFNVKNVSVKEIR----RGNVCGDAKNDP 91
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.1 bits (58), Expect = 1.9
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 18 EGAPVIPISAQLKYNIEVLCEYI 40
V S+ K ++ L + +
Sbjct: 161 GDVQVETFSSLKKQGVDKLRQKL 183
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 91
Score = 26.0 bits (57), Expect = 2.0
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 72 VDD---LKGG-VAGGSILRGVLKVGMEIEVRPGLV 102
V++ + G V G++ G++ VG +++ G+
Sbjct: 14 VEEVVNIMGKDVIIGTVESGMIGVGFKVKGPSGIG 48
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 2.1
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 5 YVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKIP 45
+ + + ISA+ YN E ++ +K+
Sbjct: 122 RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 2.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKIP 45
+ SA+ N+ + I KK+P
Sbjct: 142 SLLFMETSAKTSMNVNEIFMAIAKKLP 168
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 26.6 bits (58), Expect = 2.5
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 24 PISAQLKYNIEVLCEY-ITKKIPIPIRDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGG 82
P++AQ Y E L E I I++ L++ S V D A G
Sbjct: 2 PVTAQ-AYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTS-----DKGRFYAFG 55
Query: 83 SILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIGVG 141
+ G +K G ++ ++ + L K I ++ + + G +IG+
Sbjct: 56 RVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV 114
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 26.0 bits (57), Expect = 2.6
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 77 GGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGG 136
G V G++ RG+LK G E E K I + + + L A G
Sbjct: 22 GTVVTGTLERGILKKGDECEFLGHS-----------KNIRTVVTGIEMFHKSLDRAEAGD 70
Query: 137 LIGVGTKIEPTLCRADRLVGQVLGAVGALP 166
+G + L R D G V+ G++
Sbjct: 71 NLGALVR---GLKREDLRRGLVMAKPGSIQ 97
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.4 bits (57), Expect = 3.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKI 44
G + SA+ N+E KKI
Sbjct: 140 GLLFLEASAKTGENVEDAFLEAAKKI 165
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 26.9 bits (58), Expect = 3.6
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 114 PIFSRIVSLFAEQNELQFAVPGGLIGVGTKIEPTLCRADRLVGQ 157
P F + + + +QF PG G + P G+
Sbjct: 2 PFFKSLKE-YVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGE 44
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 25.1 bits (55), Expect = 3.7
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 77 GGVAGGSILRGVLKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGG 136
G V G + RG++KVG E+E+ K T K S + + L G
Sbjct: 20 GTVVTGRVERGIIKVGEEVEIVG--------IKETQK---STCTGVEMFRKLLDEGRAGE 68
Query: 137 LIGV 140
+GV
Sbjct: 69 NVGV 72
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.3 bits (57), Expect = 3.8
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
+ + V+Q+ E + A+ + SA+ N+E L + ++
Sbjct: 123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 26.0 bits (56), Expect = 4.1
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKI 44
G P + SA+ N+++ I K++
Sbjct: 143 GLPFMETSAKTGLNVDLAFTAIAKEL 168
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 26.2 bits (56), Expect = 4.5
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYI 40
+ + ++++ A +IPISA I L +
Sbjct: 173 HEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTML 212
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 25.7 bits (55), Expect = 4.8
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKI 44
G P + SA+ K ++ L I +++
Sbjct: 139 GCPFMETSAKSKTMVDELFAEIVRQM 164
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 26.0 bits (56), Expect = 4.8
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKI 44
G SA+ N++ E + I
Sbjct: 141 GFEFFEASAKDNINVKQTFERLVDVI 166
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain
{Bacillus cereus [TaxId: 1396]}
Length = 244
Score = 25.8 bits (57), Expect = 4.9
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 166 PKIFIELEISYHLLKRLL-----GVRMEGDKKGAKVQKLTRNE 203
P +F +L ISY L G+R++ G K+T N
Sbjct: 72 PAVFDQLGISYSDLSFFAELGADGIRLDVGFDGLTEAKMTNNP 114
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 25.1 bits (55), Expect = 5.3
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 68 PGCEVDDLKGGVAGGSILRGVLKVGMEIEVRPG 100
P K + G +L GV++ G + G
Sbjct: 11 PKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDG 43
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 25.9 bits (56), Expect = 5.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 19 GAPVIPISAQLKYNIEVLCEYITKKI 44
G + SA+ N+E + + I
Sbjct: 142 GIKFMETSAKANINVENAFFTLARDI 167
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.5 bits (55), Expect = 5.5
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 1 MQVKYVTQKWRLERTVAEGAPVIPISAQLKYNIEVLCEYITKKI 44
M+ + VT G P I SA+ N+ + + K I
Sbjct: 119 METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2
and 4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 24.5 bits (53), Expect = 6.4
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 49 RDFTSSPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILRGVLKVGMEIE 96
R+ S ++ + +F + G V G+I +G++KVG E++
Sbjct: 1 RNTESYFKMPLDHAFPIKG--------AGTVVTGTINKGIVKVGDELK 40
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 24.4 bits (53), Expect = 7.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 77 GGVAGGSILRGVLKVGMEIEVRP 99
G + G I G +K + V P
Sbjct: 22 GTILEGKIEAGSIKKNSNVLVMP 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,002,678
Number of extensions: 45585
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 57
Length of query: 283
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,254,276
Effective search space: 249600924
Effective search space used: 249600924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)