BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11770
(668 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 240 bits (612), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 191/564 (33%), Positives = 289/564 (51%), Gaps = 70/564 (12%)
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
F++G+ +V VPEGL VT+ L + K+M + N LV++L+A ET+G+ + ICSDKTGT
Sbjct: 328 FLIGI--IVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGT 385
Query: 131 LTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMA--------- 181
LT NRMT V + + N D E+ + + S S+I A
Sbjct: 386 LTQNRMT-----VAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQA 440
Query: 182 -PENANELPKQV-GNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTV 239
+N L + V G+ +E ALL + + Q +RD P+ V FNS K ++
Sbjct: 441 GQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIV---EIPFNSTNKYQLSI 497
Query: 240 IPKKNG----YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGL 295
+ Y + KGA E IL +CS I NG E +DM+ +N + G
Sbjct: 498 HENEKSSESRYLLVMKGAPERILDRCSTIL-LNGAEEPLKEDMK-EAFQNAYLELGGLGE 555
Query: 296 RTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIE---DPVRPEVPEA 352
R + + DK + EG P DE N + T LC +G+ DP R VP+A
Sbjct: 556 RVLGFCHFALPEDK------YNEGYPFDADEPNFPT--TDLCFVGLMAMIDPPRAAVPDA 607
Query: 353 IKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGED-------YLILEGKEFNRR---- 401
+ KC+ AGI + MVTGD+ TA++IA GI+ G + L + + N R
Sbjct: 608 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKA 667
Query: 402 -------VRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVT 454
++D + EV ++L + V AR+SP K +V+G +VAVT
Sbjct: 668 CVVHGSDLKDLSTEVLDDILH--YHTEIVFARTSPQQKLIIVEG-----CQRQGAIVAVT 720
Query: 455 GDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKF 514
GDG ND PALKKAD+G AMGI+G+DV+K+A+D+IL DDNF+SIV V GR ++D++ K
Sbjct: 721 GDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKS 780
Query: 515 LQFQLTVNVVAV---IVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLL 571
+ + LT N+ + +V IG + PL V +L ++L D + +++LA E D++
Sbjct: 781 IAYTLTSNIPEITPFLVFIIGNVPL---PLGTVTILCIDLGTDMVPAISLAYEQAESDIM 837
Query: 572 LRKPYG-RTKALISKTMMKNIIGQ 594
R+P +T L+++ ++ GQ
Sbjct: 838 KRQPRNPKTDKLVNERLISMAYGQ 861
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 228 bits (581), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 189/618 (30%), Positives = 304/618 (49%), Gaps = 74/618 (11%)
Query: 11 DEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRF 70
++ K+ LQ KL + Q+ S I + +I I + D + R + +
Sbjct: 244 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF-------NDPVHGGSWIRGAIYY 296
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
F + V + V A+PEGLP +T LA ++M K N +VR L + ET+G + ICSDKTGT
Sbjct: 297 FKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGT 356
Query: 131 LTTNRMTAVQAYV--------CEVQYKNIPKYEDIPEDIASK------------IVEGIS 170
LTTN+M+ + ++ C + +I PE K +VE +
Sbjct: 357 LTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELAT 416
Query: 171 VNSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRD-----------DLP 219
+ + + + ++VG TE AL V + VR+ +
Sbjct: 417 ICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 476
Query: 220 EEVFTRVYT--FNSVRKSMSTVI-PKKN-----GYRVYTKGASEIILKKCSYIYGRNGHL 271
++ + +T F+ RKSMS P K+ G +++ KGA E ++ +C+Y+ R G
Sbjct: 477 RQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYV--RVGTT 534
Query: 272 E-KFTKDMQGRLVRNVIE-PMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNI 329
T ++ +++ + E D LR +++A +D + E+ DD S
Sbjct: 535 RVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMV---------LDDSSRF 585
Query: 330 VSH---LTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKP 386
+ + LT + V+G+ DP R EV +I+ C+ AGI + M+TGDN TA +I + GI
Sbjct: 586 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 645
Query: 387 GEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISA 446
E+ + + + R D+ +Q + R AR PS K +V+ + +
Sbjct: 646 NEE---VADRAYTGREFDDLPLAEQR---EACRRACCFARVEPSHKSKIVE-----YLQS 694
Query: 447 GREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRN 506
E+ A+TGDG ND PALKKA++G AMG +GT VAK AS+++L DDNFS+IV AV GR
Sbjct: 695 YDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRA 753
Query: 507 VYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMP 566
+Y+++ +F+++ ++ NV V+ F+ A L VQ+LWVNL+ D L + AL P
Sbjct: 754 IYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPP 813
Query: 567 TPDLLLRKPYGRTKALIS 584
D++ R P + LIS
Sbjct: 814 DLDIMDRPPRSPKEPLIS 831
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 228 bits (581), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 189/618 (30%), Positives = 304/618 (49%), Gaps = 74/618 (11%)
Query: 11 DEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRF 70
++ K+ LQ KL + Q+ S I + +I I + D + R + +
Sbjct: 243 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF-------NDPVHGGSWIRGAIYY 295
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
F + V + V A+PEGLP +T LA ++M K N +VR L + ET+G + ICSDKTGT
Sbjct: 296 FKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGT 355
Query: 131 LTTNRMTAVQAYV--------CEVQYKNIPKYEDIPEDIASK------------IVEGIS 170
LTTN+M+ + ++ C + +I PE K +VE +
Sbjct: 356 LTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELAT 415
Query: 171 VNSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRD-----------DLP 219
+ + + + ++VG TE AL V + VR+ +
Sbjct: 416 ICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 475
Query: 220 EEVFTRVYT--FNSVRKSMSTVI-PKKN-----GYRVYTKGASEIILKKCSYIYGRNGHL 271
++ + +T F+ RKSMS P K+ G +++ KGA E ++ +C+Y+ R G
Sbjct: 476 RQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYV--RVGTT 533
Query: 272 E-KFTKDMQGRLVRNVIE-PMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNI 329
T ++ +++ + E D LR +++A +D + E+ DD S
Sbjct: 534 RVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMV---------LDDSSRF 584
Query: 330 VSH---LTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKP 386
+ + LT + V+G+ DP R EV +I+ C+ AGI + M+TGDN TA +I + GI
Sbjct: 585 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 644
Query: 387 GEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISA 446
E+ + + + R D+ +Q + R AR PS K +V+ + +
Sbjct: 645 NEE---VADRAYTGREFDDLPLAEQR---EACRRACCFARVEPSHKSKIVE-----YLQS 693
Query: 447 GREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRN 506
E+ A+TGDG ND PALKKA++G AMG +GT VAK AS+++L DDNFS+IV AV GR
Sbjct: 694 YDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRA 752
Query: 507 VYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMP 566
+Y+++ +F+++ ++ NV V+ F+ A L VQ+LWVNL+ D L + AL P
Sbjct: 753 IYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPP 812
Query: 567 TPDLLLRKPYGRTKALIS 584
D++ R P + LIS
Sbjct: 813 DLDIMDRPPRSPKEPLIS 830
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 187/617 (30%), Positives = 304/617 (49%), Gaps = 73/617 (11%)
Query: 11 DEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRF 70
++ K+ LQ KL + Q+ S I + +I I + D + R + +
Sbjct: 243 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF-------NDPVHGGSWIRGAIYY 295
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
F + V + V A+PEGLP +T LA ++M K N +VR L + ET+G + ICSDKTGT
Sbjct: 296 FKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGT 355
Query: 131 LTTNRMTAVQAYV--------CEVQYKNIPKYEDIPEDIASK------------IVEGIS 170
LTTN+M+ + ++ C + ++ PE K +VE +
Sbjct: 356 LTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELAT 415
Query: 171 VNSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRD-----------DLP 219
+ + + + ++VG TE AL V + VR+ +
Sbjct: 416 ICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 475
Query: 220 EEVFTRVYT--FNSVRKSMSTVI-PKKN----GYRVYTKGASEIILKKCSYIYGRNGHLE 272
++ + +T F+ RKSMS P K+ G +++ KGA E ++ +C+Y+ R G
Sbjct: 476 RQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYV--RVGTTR 533
Query: 273 -KFTKDMQGRLVRNVIE-PMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIV 330
T ++ +++ + E D LR +++A +D + E+ DD + +
Sbjct: 534 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMV---------LDDSTKFM 584
Query: 331 SH---LTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPG 387
+ LT + V+G+ DP R EV +I+ C+ AGI + M+TGDN TA +I + GI
Sbjct: 585 EYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGEN 644
Query: 388 EDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAG 447
ED + + + R D+ +Q + R AR P+ K +V+ + +
Sbjct: 645 ED---VADRAYTGREFDDLPLAEQR---EACRRACCFARVEPTHKSKIVE-----YLQSF 693
Query: 448 REVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNV 507
E+ A+TGDG ND PALKKA++G AMG +GT VAK AS+++L DDNFS+IV AV GR +
Sbjct: 694 DEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAI 752
Query: 508 YDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPT 567
Y+++ +F+++ ++ NV V+ F+ A L VQ+LWVNL+ D L + AL P
Sbjct: 753 YNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPD 812
Query: 568 PDLLLRKPYGRTKALIS 584
D++ R P + LIS
Sbjct: 813 LDIMDRPPRTPKEPLIS 829
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 225 bits (573), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 188/618 (30%), Positives = 303/618 (49%), Gaps = 74/618 (11%)
Query: 11 DEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRF 70
++ K+ LQ KL + Q+ S I + +I I + D + R + +
Sbjct: 243 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF-------NDPVHGGSWIRGAIYY 295
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
F + V + V A+PEGLP +T LA ++M K N +VR L + ET+G + ICS KTGT
Sbjct: 296 FKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGT 355
Query: 131 LTTNRMTAVQAYV--------CEVQYKNIPKYEDIPEDIASK------------IVEGIS 170
LTTN+M+ + ++ C + +I PE K +VE +
Sbjct: 356 LTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELAT 415
Query: 171 VNSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRD-----------DLP 219
+ + + + ++VG TE AL V + VR+ +
Sbjct: 416 ICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 475
Query: 220 EEVFTRVYT--FNSVRKSMSTVI-PKKN-----GYRVYTKGASEIILKKCSYIYGRNGHL 271
++ + +T F+ RKSMS P K+ G +++ KGA E ++ +C+Y+ R G
Sbjct: 476 RQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYV--RVGTT 533
Query: 272 E-KFTKDMQGRLVRNVIE-PMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNI 329
T ++ +++ + E D LR +++A +D + E+ DD S
Sbjct: 534 RVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMV---------LDDSSRF 584
Query: 330 VSH---LTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKP 386
+ + LT + V+G+ DP R EV +I+ C+ AGI + M+TGDN TA +I + GI
Sbjct: 585 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 644
Query: 387 GEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISA 446
E+ + + + R D+ +Q + R AR PS K +V+ + +
Sbjct: 645 NEE---VADRAYTGREFDDLPLAEQR---EACRRACCFARVEPSHKSKIVE-----YLQS 693
Query: 447 GREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRN 506
E+ A+TGDG ND PALKKA++G AMG +GT VAK AS+++L DDNFS+IV AV GR
Sbjct: 694 YDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRA 752
Query: 507 VYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMP 566
+Y+++ +F+++ ++ NV V+ F+ A L VQ+LWVNL+ D L + AL P
Sbjct: 753 IYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPP 812
Query: 567 TPDLLLRKPYGRTKALIS 584
D++ R P + LIS
Sbjct: 813 DLDIMDRPPRSPKEPLIS 830
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 177/558 (31%), Positives = 282/558 (50%), Gaps = 58/558 (10%)
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
F++G+ +V VPEGL VT+ L + K+M + N LV++L+A ET+G+ + ICSDKTGT
Sbjct: 298 FLIGI--IVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGT 355
Query: 131 LTTNRMTAVQAYVCEVQYKNIPKYED---IPEDIASKIVEGISVNSGYTSKIMAPENANE 187
LT NRMT + + Q E+ + D S +S +G ++ + N
Sbjct: 356 LTQNRMTVAHMW-SDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQEN 414
Query: 188 LP----KQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVY--TFNSVRKSMSTVIP 241
LP G+ +E ALL + + + +R E +T++ FNS K ++
Sbjct: 415 LPILKRAVAGDASESALLKCIELCCGSVKEMR-----ERYTKIVEIPFNSTNKYQLSIHK 469
Query: 242 KKNG----YRVYTKGASEIILKKCS--YIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGL 295
N + + KGA E IL +CS I+G+ L++ KD +N + G
Sbjct: 470 NPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDA----FQNAYLELGGLGE 525
Query: 296 RTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKK 355
R + + F+ D+ + D D + + +L + +I + DP R VP+A+ K
Sbjct: 526 RVLGFCHL-FLPDEQFPEGFQFDTD----DVNFPLDNLCFVGLISMIDPPRAAVPDAVGK 580
Query: 356 CQRAGITIRMVTGDNINTARSIATKCGIVKPGED-------YLILEGKEFNRR------- 401
C+ AGI + MVTGD+ TA++IA GI+ G + L + + N R
Sbjct: 581 CRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVV 640
Query: 402 ----VRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
++D E ++L + V AR+SP K +V+G +VAVTGDG
Sbjct: 641 HGSDLKDMTSEQLDDILK--YHTEIVFARTSPQQKLIIVEG-----CQRQGAIVAVTGDG 693
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQF 517
ND PA KKAD+G AMGI G+DV+K+A+D+IL DDNF+SIV V GR ++D++ K + +
Sbjct: 694 VNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAY 753
Query: 518 QLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYG 577
LT N+ + I A PL V +L ++L D + +++LA E D++ R+P
Sbjct: 754 TLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRN 813
Query: 578 -RTKALISKTMMKNIIGQ 594
+T L+++ ++ GQ
Sbjct: 814 PKTDKLVNEQLISMAYGQ 831
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 176/558 (31%), Positives = 281/558 (50%), Gaps = 58/558 (10%)
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
F++G+ +V VPEGL VT+ L + K+M + N LV++L+A ET+G+ + ICS KTGT
Sbjct: 292 FLIGI--IVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGT 349
Query: 131 LTTNRMTAVQAYVCEVQYKNIPKYED---IPEDIASKIVEGISVNSGYTSKIMAPENANE 187
LT NRMT + + Q E+ + D S +S +G ++ + N
Sbjct: 350 LTQNRMTVAHMW-SDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQEN 408
Query: 188 LP----KQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVY--TFNSVRKSMSTVIP 241
LP G+ +E ALL + + + +R E +T++ FNS K ++
Sbjct: 409 LPILKRAVAGDASESALLKCIELCCGSVKEMR-----ERYTKIVEIPFNSTNKYQLSIHK 463
Query: 242 KKNG----YRVYTKGASEIILKKCS--YIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGL 295
N + + KGA E IL +CS I+G+ L++ KD +N + G
Sbjct: 464 NPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDA----FQNAYLELGGLGE 519
Query: 296 RTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKK 355
R + + F+ D+ + D D + + +L + +I + DP R VP+A+ K
Sbjct: 520 RVLGFCHL-FLPDEQFPEGFQFDTD----DVNFPLDNLCFVGLISMIDPPRAAVPDAVGK 574
Query: 356 CQRAGITIRMVTGDNINTARSIATKCGIVKPGED-------YLILEGKEFNRR------- 401
C+ AGI + MVTGD+ TA++IA GI+ G + L + + N R
Sbjct: 575 CRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVV 634
Query: 402 ----VRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
++D E ++L + V AR+SP K +V+G +VAVTGDG
Sbjct: 635 HGSDLKDMTSEQLDDILK--YHTEIVFARTSPQQKLIIVEG-----CQRQGAIVAVTGDG 687
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQF 517
ND PA KKAD+G AMGI G+DV+K+A+D+IL DDNF+SIV V GR ++D++ K + +
Sbjct: 688 VNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAY 747
Query: 518 QLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYG 577
LT N+ + I A PL V +L ++L D + +++LA E D++ R+P
Sbjct: 748 TLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRN 807
Query: 578 -RTKALISKTMMKNIIGQ 594
+T L+++ ++ GQ
Sbjct: 808 PKTDKLVNEQLISMAYGQ 825
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 169/550 (30%), Positives = 278/550 (50%), Gaps = 71/550 (12%)
Query: 67 FVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSD 126
F+R + + ++V VPEGL VT+ L+ + K++ N +V++L+A ET+G+ + ICSD
Sbjct: 327 FLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSD 386
Query: 127 KTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIM------ 180
KTGTLT NRMT V + + N D ED + + + S +++
Sbjct: 387 KTGTLTQNRMT-----VSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRA 441
Query: 181 ---APENANELPKQV--GNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKS 235
+ ++A +PK++ G+ +E ALL F N R+ P+ + N + S
Sbjct: 442 AFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLS 501
Query: 236 MSTV-IPKKNGYRVYTKGASEIILKKCSYIYGRNGHL---EKFTKDMQ------GRLVRN 285
+ T+ P+ + + KGA E +L++CS I + L E++ + Q G L
Sbjct: 502 IHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGER 561
Query: 286 VIEPMACDGLRTISIAYKDFVTDKA-EINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDP 344
V+ G + ++ KD+ A ++ ++ S L+ ++ + DP
Sbjct: 562 VL------GFCQLYLSEKDYPPGYAFDVEAMNFP-----------TSGLSFAGLVSMIDP 604
Query: 345 VRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGED-------YLILEGKE 397
R VP+A+ KC+ AGI + MVTGD+ TA++IA GI+ G + L + +
Sbjct: 605 PRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQ 664
Query: 398 FNRR-----------VRD-NNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKIS 445
NR+ ++D + E+ + L + P + V AR+SP K +V+ ++
Sbjct: 665 VNRKDARACVINGMQLKDMDPSELVEAL--RTHPEM-VFARTSPQQKLVIVESC--QRLG 719
Query: 446 AGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGR 505
A +VAVTGDG ND PALKKAD+G AMGI G+D AK A+D+IL DDNF+SIV V GR
Sbjct: 720 A---IVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGR 776
Query: 506 NVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEM 565
++D++ K + + LT N+ + I PL + +L++ L D S++LA E
Sbjct: 777 LIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEK 836
Query: 566 PTPDLLLRKP 575
D++ +P
Sbjct: 837 AESDIMHLRP 846
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 117/500 (23%), Positives = 231/500 (46%), Gaps = 80/500 (16%)
Query: 75 VTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTN 134
+ +L+ +P +P +++++A ++ + + + + A E M +CSDKTGTLT N
Sbjct: 278 LVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLN 337
Query: 135 RMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPKQVGN 194
+++ V + EV K + K + + + + S++ EN + +
Sbjct: 338 KLS-VDKNLVEVFCKGVEK-------------DQVLLFAAMASRV---ENQDAI------ 374
Query: 195 KTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSV--RKSMSTVIPKKNGYRVYTKG 252
+ A++G + + +R+ FN V R +++ + N +RV +KG
Sbjct: 375 --DAAMVGMLADPKEARAGIRE-------VHFLPFNPVDKRTALTYIDGSGNWHRV-SKG 424
Query: 253 ASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEI 312
A E IL+ L K + D+ + V ++I+ A GLR++++A + V +K +
Sbjct: 425 APEQILE-----------LAKASNDLSKK-VLSIIDKYAERGLRSLAVA-RQVVPEKTK- 470
Query: 313 NQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNIN 372
G P W+ + ++ + DP R + E I++ G+ ++M+TGD +
Sbjct: 471 ---ESPGAP-WE----------FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLA 516
Query: 373 TARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDK 432
+ + G+ L G +D N + ++++ + A P K
Sbjct: 517 IGKETGRRLGMGTNMYPSSALLGTH-----KDAN--LASIPVEELIEKADGFAGVFPEHK 569
Query: 433 YTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDD 492
Y +VK K+ + +V +TGDG ND PALKKAD+G A+ TD A+ ASDI+LT+
Sbjct: 570 YEIVK-----KLQERKHIVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLTEP 623
Query: 493 NFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLI 552
S I+ AV+ R ++ + + + +++ + ++ F+ + + A +L + ++
Sbjct: 624 GLSVIISAVLTSRAIFQRMKNYTIYAVSIT-IRIVFGFMLIALIWEFDFSAFMVLIIAIL 682
Query: 553 MD-TLASLA--LATEMPTPD 569
D T+ +++ PTPD
Sbjct: 683 NDGTIMTISKDRVKPSPTPD 702
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 119/534 (22%), Positives = 225/534 (42%), Gaps = 109/534 (20%)
Query: 59 WKAIYFRE--FVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACET 116
W + ++R V+ + + ++ VP GLP VT ++A + K +V+ L A E+
Sbjct: 309 WVSSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIES 368
Query: 117 MGNATAICSDKTGTLTTNRMTAVQAY-VCEVQYKNIPKYEDIPEDI-------ASKIVEG 168
+ +CSDKTGTLT N+++ Y V V PED+ AS+ +G
Sbjct: 369 LAGVEILCSDKTGTLTKNKLSLHDPYTVAGVD----------PEDLMLTACLAASRKKKG 418
Query: 169 I-SVNSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVY 227
I +++ + + K Y + L + + +
Sbjct: 419 IDAIDKAFLKSL-----------------------------KYYPRAKSVLSKYKVLQFH 449
Query: 228 TFNSVRKSMSTVIPKKNGYRVY-TKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNV 286
F+ V K + V+ G R+ KGA +LK + +++ K N
Sbjct: 450 PFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEVDQAYK--------NK 501
Query: 287 IEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVR 346
+ A G R++ +A K G+ +W+ I+ + C+ DP R
Sbjct: 502 VAEFATRGFRSLGVARK--------------RGEGSWE----ILGIMPCM------DPPR 537
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNN 406
+ + + + + G++I+M+TGD + AR + + G+ G + E + D
Sbjct: 538 HDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL---GTNIYNAE-RLGLGGGGDMP 593
Query: 407 GEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKK 466
G + ++ A P KY +V+ + +VA+TGDG ND P+LKK
Sbjct: 594 GSEVYDFVEAA----DGFAEVFPQHKYNVVEILQQRGY-----LVAMTGDGVNDAPSLKK 644
Query: 467 ADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAV 526
AD G A+ +D A+ A+DI+ +I+ A+ R ++ + ++ +++ +++
Sbjct: 645 ADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLE 703
Query: 527 IVAFIGAC-AVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRT 579
I F+G A+ + L ++++ + D +A+LA+A + PY +T
Sbjct: 704 I--FLGLWIAILNRSLNIELVVFIAIFAD-VATLAIAYD--------NAPYSQT 746
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 88/189 (46%), Gaps = 43/189 (22%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNR 400
+EDP++ PE I + Q++GI I M+TGD+ TA ++A GI K
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKK--------------- 595
Query: 401 RVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTND 460
V+A P DK +V + D + +VA+ GDG ND
Sbjct: 596 ----------------------VVAEIMPEDKSRIVSELKDKGL-----IVAMAGDGVND 628
Query: 461 GPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLT 520
PAL KAD+G AMG TGTDVA E++ + L + I KA + +I + L F
Sbjct: 629 APALAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFI 687
Query: 521 VNVVAVIVA 529
NV+ V +A
Sbjct: 688 YNVLGVPLA 696
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
I V+VL++A P L LA +S+ V K + L+++ +A E M + DKTGT
Sbjct: 371 LIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGT 430
Query: 131 LTTNR 135
LT
Sbjct: 431 LTEGH 435
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 44/192 (22%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
+I + D ++ A+++ +R GI + M+TGDN +A +I+ +E
Sbjct: 529 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-----------------RE 571
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
N LD V+A P K VK K+ A +EVVA GDG
Sbjct: 572 LN--------------LD------LVIAEVLPHQKSEEVK-----KLQA-KEVVAFVGDG 605
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQF 517
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I + + +
Sbjct: 606 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFW 664
Query: 518 QLTVNVVAVIVA 529
L NV+ + A
Sbjct: 665 ALIYNVILIPAA 676
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 59 WKAIYFREFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMG 118
W I + F + VLVVA P LA +L + K + L+++ DA E
Sbjct: 343 WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAE 402
Query: 119 NATAICSDKTGTLTTNR 135
TA+ DKTGTLT +
Sbjct: 403 KVTAVIFDKTGTLTKGK 419
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 44/192 (22%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
+I + D ++ A+++ +R GI + M+TGDN +A +I+ +E
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-----------------RE 493
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
N LD V+A P K VK K+ A +EVVA GDG
Sbjct: 494 LN--------------LD------LVIAEVLPHQKSEEVK-----KLQA-KEVVAFVGDG 527
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQF 517
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I + + +
Sbjct: 528 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFW 586
Query: 518 QLTVNVVAVIVA 529
L NV+ + A
Sbjct: 587 ALIYNVILIPAA 598
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 59 WKAIYFREFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMG 118
W I + F + VLVVA P LA +L + K + L+++ DA E
Sbjct: 265 WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAE 324
Query: 119 NATAICSDKTGTLTTNR 135
TA+ DKTGTLT +
Sbjct: 325 KVTAVIFDKTGTLTKGK 341
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 44/174 (25%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
+I + D ++ A+++ +R GI + M+TGDN +A +I+ +E
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-----------------RE 199
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
N LD V+A P K VK K+ A +EVVA GDG
Sbjct: 200 LN--------------LD------LVIAEVLPHQKSEEVK-----KLQA-KEVVAFVGDG 233
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 511
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I
Sbjct: 234 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 286
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 107 LVRHLDACETMGNATAICSDKTGTLTTNR 135
L+++ DA E TA+ DKTGTLT +
Sbjct: 19 LIKNADALEVAEKVTAVIFDKTGTLTKGK 47
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 44/174 (25%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
+I + D ++ A+++ +R GI + M+TGDN +A +I+ +E
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-----------------RE 199
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
N LD V+A P K VK K+ A +EVVA GDG
Sbjct: 200 LN--------------LD------LVIAEVLPHQKSEEVK-----KLQA-KEVVAFVGDG 233
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 511
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I
Sbjct: 234 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 286
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 107 LVRHLDACETMGNATAICSDKTGTLTTNR 135
L+++ DA E TA+ DKTGTLT +
Sbjct: 19 LIKNADALEVAEKVTAVIFDKTGTLTKGK 47
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 76/177 (42%), Gaps = 47/177 (26%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
VI + D +RPE EAI K + GI M+TGDN A+ +A + G+ +DY
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL----DDYFA----- 188
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
+V P + KY V A+ GDG
Sbjct: 189 ------------------EVLPHEKAEKVKEVQQKY----------------VTAMVGDG 214
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKF 514
ND PAL +ADVG A+G GTDVA E +DI+L ++ + V R Y SKF
Sbjct: 215 VNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTY---SKF 267
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 74/175 (42%), Gaps = 44/175 (25%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
VI + D +RPE EAI K + GI M+TGDN A+ +A + G+ +DY
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL----DDYFA----- 188
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
+V P + KY V A+ GDG
Sbjct: 189 ------------------EVLPHEKAEKVKEVQQKY----------------VTAMVGDG 214
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIS 512
ND PAL +ADVG A+G GTDVA E +DI+L ++ + V R Y +
Sbjct: 215 VNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 45/181 (24%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
+I + D ++ A+++ +R GI + +TGDN +A +I+ +E
Sbjct: 137 IIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAIS-----------------RE 179
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
N LD V+A P K VK K+ A +EVVA GDG
Sbjct: 180 LN--------------LD------LVIAEVLPHQKSEEVK-----KLQA-KEVVAFVGDG 213
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQF 517
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R S QF
Sbjct: 214 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTXSKWS-HPQF 271
Query: 518 Q 518
+
Sbjct: 272 E 272
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 52/151 (34%)
Query: 352 AIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQ 411
A+++ +R GI + +TGDN +A +I+ +E N
Sbjct: 30 AVQELKRXGIKVGXITGDNWRSAEAIS-----------------RELN------------ 60
Query: 412 NLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGF 471
LD V+A P K VK + +EVVA GDG ND PAL +AD+G
Sbjct: 61 --LD------LVIAEVLPHQKSEEVKKL------QAKEVVAFVGDGINDAPALAQADLGI 106
Query: 472 AMGITGTDVAKEASDIILTDDNFSSIVKAVM 502
A+G + DI+L D+ +V A+
Sbjct: 107 AVG---------SGDIVLIRDDLRDVVAAIQ 128
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 60/193 (31%)
Query: 309 KAEINQ---VHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRM 365
KAE N V+I G+P + I D RP + + ++K + G+ I +
Sbjct: 112 KAENNNDIAVYINGEP--------------IASFNISDVPRPNLKDYLEKLKNEGLKIII 157
Query: 366 VTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLA 425
++GD + + ++ KE N + E NL
Sbjct: 158 LSGDKEDKVKELS-----------------KELNIQ------EYYSNL------------ 182
Query: 426 RSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEAS 485
SP DK +++ K+ V + GDG ND AL ADV AMG G D++K +
Sbjct: 183 --SPEDKVRIIE-----KLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVA 234
Query: 486 DIILTDDNFSSIV 498
DIIL ++ +++
Sbjct: 235 DIILVSNDIGTLL 247
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 60/193 (31%)
Query: 309 KAEINQ---VHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRM 365
KAE N V+I G+P + I D RP + + ++K + G+ I +
Sbjct: 112 KAENNNDIAVYINGEP--------------IASFNISDVPRPNLKDYLEKLKNEGLKIII 157
Query: 366 VTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLA 425
++GD + + ++ KE N + E NL
Sbjct: 158 LSGDKEDKVKELS-----------------KELNIQ------EYYSNL------------ 182
Query: 426 RSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEAS 485
SP DK +++ K+ V + GDG ND AL ADV AMG G D++K +
Sbjct: 183 --SPEDKVRIIE-----KLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVA 234
Query: 486 DIILTDDNFSSIV 498
DIIL ++ +++
Sbjct: 235 DIILVSNDIGTLL 247
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 60/193 (31%)
Query: 309 KAEINQ---VHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRM 365
KAE N V+I G+P + I D RP + + ++K + G+ I +
Sbjct: 112 KAENNNDIAVYINGEP--------------IASFNISDVPRPNLKDYLEKLKNEGLKIII 157
Query: 366 VTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLA 425
++GD + + ++ KE N + E NL
Sbjct: 158 LSGDKEDKVKELS-----------------KELNIQ------EYYSNL------------ 182
Query: 426 RSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEAS 485
SP DK +++ K+ V + GDG ND AL ADV AMG G D++K +
Sbjct: 183 --SPEDKVRIIE-----KLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVA 234
Query: 486 DIILTDDNFSSIV 498
DIIL ++ +++
Sbjct: 235 DIILVSNDIGTLL 247
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 25/49 (51%)
Query: 444 ISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDD 492
I RE V GDG ND +K A +G AMG V K A I LT+D
Sbjct: 209 IGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTND 257
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 65 REFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHL 111
R + +F + V + V A+PEGLP +T LA ++M K N +VR L
Sbjct: 2 RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3A6H|A Chain A, W154a Mutant Creatininase
pdb|3A6H|B Chain B, W154a Mutant Creatininase
pdb|3A6H|C Chain C, W154a Mutant Creatininase
pdb|3A6H|D Chain D, W154a Mutant Creatininase
pdb|3A6H|E Chain E, W154a Mutant Creatininase
pdb|3A6H|F Chain F, W154a Mutant Creatininase
Length = 260
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 268 NGHLEKFTKDMQG-RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDE 326
NGH E ++G L + + + ++Y DFV D A I Q++ EG WD E
Sbjct: 118 NGHYENSMFIVEGIDLALRELRYAGIQDFKVVVLSYADFVKDPAVIQQLYPEGFLGWDIE 177
Query: 327 SNIV 330
V
Sbjct: 178 HGGV 181
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 23/49 (46%)
Query: 444 ISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDD 492
I RE V GDG ND +K A G A G V K A I LT+D
Sbjct: 209 IGXTREEVIAIGDGYNDLSXIKFAGXGVAXGNAQEPVKKAADYITLTND 257
>pdb|1J2T|A Chain A, Creatininase Mn
pdb|1J2T|B Chain B, Creatininase Mn
pdb|1J2T|C Chain C, Creatininase Mn
pdb|1J2T|D Chain D, Creatininase Mn
pdb|1J2T|E Chain E, Creatininase Mn
pdb|1J2T|F Chain F, Creatininase Mn
pdb|1J2U|A Chain A, Creatininase Zn
pdb|1J2U|B Chain B, Creatininase Zn
pdb|1J2U|C Chain C, Creatininase Zn
pdb|1J2U|D Chain D, Creatininase Zn
pdb|1J2U|E Chain E, Creatininase Zn
pdb|1J2U|F Chain F, Creatininase Zn
pdb|1V7Z|A Chain A, Creatininase-Product Complex
pdb|1V7Z|B Chain B, Creatininase-Product Complex
pdb|1V7Z|C Chain C, Creatininase-Product Complex
pdb|1V7Z|D Chain D, Creatininase-Product Complex
pdb|1V7Z|E Chain E, Creatininase-Product Complex
pdb|1V7Z|F Chain F, Creatininase-Product Complex
pdb|3A6D|A Chain A, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|B Chain B, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|C Chain C, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|D Chain D, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|E Chain E, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|F Chain F, Creatininase Complexed With 1-Methylguanidine
Length = 260
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 268 NGHLEKFTKDMQG-RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDE 326
NGH E ++G L + + + ++Y DFV D A I Q++ EG WD E
Sbjct: 118 NGHYENSMFIVEGIDLALRELRYAGIQDFKVVVLSYWDFVKDPAVIQQLYPEGFLGWDIE 177
Query: 327 SNIV 330
V
Sbjct: 178 HGGV 181
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 451 VAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
+ GDG ND P LK A +G AMG V A + T DN S + KA+
Sbjct: 213 IMACGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFVTDTVDN-SGLYKAL 262
>pdb|3A6G|A Chain A, W154f Mutant Creatininase
pdb|3A6G|B Chain B, W154f Mutant Creatininase
pdb|3A6G|C Chain C, W154f Mutant Creatininase
pdb|3A6G|D Chain D, W154f Mutant Creatininase
pdb|3A6G|E Chain E, W154f Mutant Creatininase
pdb|3A6G|F Chain F, W154f Mutant Creatininase
Length = 260
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 268 NGHLEKFTKDMQG-RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDE 326
NGH E ++G L + + + ++Y DFV D A I Q++ EG WD E
Sbjct: 118 NGHYENSMFIVEGIDLALRELRYAGIQDFKVVVLSYFDFVKDPAVIQQLYPEGFLGWDIE 177
Query: 327 SNIV 330
V
Sbjct: 178 HGGV 181
>pdb|3A6J|A Chain A, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|B Chain B, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|C Chain C, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|D Chain D, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|E Chain E, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|F Chain F, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6K|A Chain A, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|B Chain B, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|C Chain C, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|D Chain D, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|E Chain E, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|F Chain F, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6L|A Chain A, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|B Chain B, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|C Chain C, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|D Chain D, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|E Chain E, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|F Chain F, E122q Mutant Creatininase, Zn-Zn Type
Length = 260
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 295 LRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIV 330
+ + ++Y DFV D A I Q++ EG WD E V
Sbjct: 146 FKVVVLSYWDFVKDPAVIQQLYPEGFLGWDIEHGGV 181
>pdb|1Q3K|A Chain A, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|B Chain B, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|C Chain C, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|D Chain D, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|E Chain E, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|F Chain F, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
Length = 259
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 268 NGHLEKFTKDMQG-RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDE 326
NGH E ++G L + + + ++Y DFV D A I +++ EG WD E
Sbjct: 117 NGHYENSMFIVEGIDLALRELRYAGIHDFKVVVLSYWDFVKDPAVIQRLYPEGFLGWDIE 176
Query: 327 SNIV 330
V
Sbjct: 177 HGGV 180
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 455 GDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
GDG ND L+ A +G AMG DV K A+D + + I KA+
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTAPIDEDGISKAM 255
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 455 GDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
GDG ND L+ A +G AMG DV K A+D + + I KA+
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTAPIDEDGISKAM 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,991,833
Number of Sequences: 62578
Number of extensions: 790838
Number of successful extensions: 1937
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1832
Number of HSP's gapped (non-prelim): 77
length of query: 668
length of database: 14,973,337
effective HSP length: 105
effective length of query: 563
effective length of database: 8,402,647
effective search space: 4730690261
effective search space used: 4730690261
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)