RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11770
(668 letters)
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 819 bits (2117), Expect = 0.0
Identities = 345/655 (52%), Positives = 436/655 (66%), Gaps = 44/655 (6%)
Query: 12 EKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFF 71
E + LQ KL++LA IG G A+L ++L +Y + D + F+ F
Sbjct: 271 EDSTPLQEKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIR-GDGRDTEEDAQTFLDHF 329
Query: 72 IVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTL 131
I+ VT++VVAVPEGLPLAVT++LAYS+KKMMKDNNLVRHL ACETMG+ATAICSDKTGTL
Sbjct: 330 IIAVTIVVVAVPEGLPLAVTIALAYSMKKMMKDNNLVRHLAACETMGSATAICSDKTGTL 389
Query: 132 TTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANE--LP 189
T N M+ VQ Y+ E ++ ++P+ + + +VEGIS+NS + E +
Sbjct: 390 TQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNILVEGISLNSS------SEEVVDRGGKR 443
Query: 190 KQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIPKKNG-YRV 248
+G+KTECALL F + + ++YQ VR EE ++Y FNS RK MS V+ G YR
Sbjct: 444 AFIGSKTECALLDFGLLLLRDYQEVR---AEEKVVKIYPFNSERKFMSVVVKHSGGKYRE 500
Query: 249 YTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTD 308
+ KGASEI+LK C NG + D + R +VIEP+A D LRTI +AY+DF +
Sbjct: 501 FRKGASEIVLKPCRKRLDSNGEATPISDDDKDR-CADVIEPLASDALRTICLAYRDFAPE 559
Query: 309 KAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTG 368
+ P D + LT + V+GI+DP+RP V EA+++CQRAGIT+RMVTG
Sbjct: 560 EF----------PRKDYPNK---GLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTG 606
Query: 369 DNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSS 428
DNI+TA++IA CGI+ G L +EGKEF V +D + P+LRVLARSS
Sbjct: 607 DNIDTAKAIARNCGILTFGG--LAMEGKEFRSLV--------YEEMDPILPKLRVLARSS 656
Query: 429 PSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDII 488
P DK LV + D EVVAVTGDGTND PALK ADVGF+MGI+GT+VAKEASDII
Sbjct: 657 PLDKQLLVLMLKDM-----GEVVAVTGDGTNDAPALKLADVGFSMGISGTEVAKEASDII 711
Query: 489 LTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLW 548
L DDNF+SIV+AV WGRNVYD+I KFLQFQLTVNVVAVI+ F+G+C SPL AVQ+LW
Sbjct: 712 LLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVNVVAVILTFVGSCISSTSPLTAVQLLW 771
Query: 549 VNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFGILFF 608
VNLIMDTLA+LALATE PT LL RKP GR LIS++M KNI+GQA YQLV+ F +LF
Sbjct: 772 VNLIMDTLAALALATEPPTEALLDRKPIGRNAPLISRSMWKNILGQAGYQLVVTFILLFA 831
Query: 609 GDKLLDIPTGRGAEYGSLPTQHFTIIFNTFVLMTLFNEINARKIHGQRNVFEGLF 663
G + D+ + TI+FNTFVL+ LFNEINARK++ +RNVFEGLF
Sbjct: 832 GGSIFDVSGPDEITSHQ-QGELNTIVFNTFVLLQLFNEINARKLY-ERNVFEGLF 884
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 455 bits (1173), Expect = e-149
Identities = 214/655 (32%), Positives = 316/655 (48%), Gaps = 65/655 (9%)
Query: 1 MKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWK 60
K + E K+ LQ KL KL + + L V+ +
Sbjct: 245 GKIARLLPTKKEVKTPLQRKLNKLGKFLLVLALVLGALVFVVGL---------------- 288
Query: 61 AIYFREFVR-FFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGN 119
+ F+ + + V AVPEGLP VT++LA ++M KDN +VR L+A ET+G+
Sbjct: 289 -FRGGNGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKDNAIVRSLNAIETLGS 347
Query: 120 ATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKI 179
ICSDKTGTLT N+MT + Y+ K+I + + + ++ + T +
Sbjct: 348 VDVICSDKTGTLTQNKMTVKKIYINGGG-KDIDDKDLKDSPALLRFLLAAALCNSVTPE- 405
Query: 180 MAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYT--FNSVRKSMS 237
Q G+ TE AL+ F A + L E + + F+S RK MS
Sbjct: 406 ------KNGWYQAGDPTEGALVEF--AEKLGFSLDLSGLEVE-YPILAEIPFDSERKRMS 456
Query: 238 TVI-PKKNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLR 296
++ + Y ++ KGA E+IL++C I G LE T++ L V E +A +GLR
Sbjct: 457 VIVKTDEGKYILFVKGAPEVILERCKSI----GELEPLTEEGLRTLEEAVKE-LASEGLR 511
Query: 297 TISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKC 356
+++AYK + + IE D L L + GIEDP R +V EAI++
Sbjct: 512 VLAVAYKKLDRAEKDDEVDEIESD------------LVFLGLTGIEDPPREDVKEAIEEL 559
Query: 357 QRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDK 416
+ AGI + M+TGD++ TA +IA +CGI E L+++G E + + L +
Sbjct: 560 REAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELD--------ALSDEELAE 611
Query: 417 VWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGIT 476
+ L V AR SP K +V+ + S VVA+TGDG ND PALK ADVG AMG
Sbjct: 612 LVEELSVFARVSPEQKARIVEALQKSG-----HVVAMTGDGVNDAPALKAADVGIAMGGE 666
Query: 477 GTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACA- 535
GTD AKEA+DI+L DDNF++IV AV+ GR VY +I KF+ + L+ NV V+ I +
Sbjct: 667 GTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEVLTLLIYSLFN 726
Query: 536 VQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQA 595
+ PL +Q+LW+NL+ D+L +LAL E P D++ R P G + L ++ + I
Sbjct: 727 LFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFILII 786
Query: 596 IYQLVIIFGILFFGDKLLDIPTGRGAEYGSLPTQHFTIIFNTFVLMTLFNEINAR 650
I+F + F L T F VL+ L + R
Sbjct: 787 GLLSAILFILTFLL--YLLGFIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAVR 839
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 330 bits (847), Expect = e-101
Identities = 203/615 (33%), Positives = 301/615 (48%), Gaps = 66/615 (10%)
Query: 5 EVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYF 64
E+ E + LQ KL + + I IL VI I + D +
Sbjct: 182 EMRAAEQED-TPLQKKLDEFGELLSKVIGLICILVWVINIGHF-------NDPALGGGWI 233
Query: 65 REFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAIC 124
+ + +F + V + V A+PEGLP +T LA +KM K N +VR L + ET+G T IC
Sbjct: 234 QGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKKNAIVRKLPSVETLGCTTVIC 293
Query: 125 SDKTGTLTTNRMT-----AVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYT--- 176
SDKTGTLTTN+M+ A+ + + PE I + V G
Sbjct: 294 SDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYAPEG--GVIKDDGPVAGGQDAGL 351
Query: 177 ---SKIMAPENANELP--------KQVGNKTECALLGFVVAIGKNYQTVRDDLP------ 219
+ I A N + L ++VG TE AL V +G T
Sbjct: 352 EELATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMG-LPATKNGVSSKRRPAL 410
Query: 220 ------EEVFTRVYT--FNSVRKSMSTVIPKKNGYRVYTKGASEIILKKCSYIYGRNGHL 271
+ F ++ T F+ RKSMS + G +++ KGA E +L++C++I +G
Sbjct: 411 GCNSVWNDKFKKLATLEFSRDRKSMSVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRA 470
Query: 272 EKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVS 331
T M+ ++ + E LR +++A+KD + E DP + I S
Sbjct: 471 VPLTDKMKNTILSVIKEMGTTKALRCLALAFKDIPDPREEDLLS----DPA--NFEAIES 524
Query: 332 HLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYL 391
LT + V+G+ DP RPEV +AI+KC+ AGI + M+TGDN TA +I + GI P ED
Sbjct: 525 DLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVT 584
Query: 392 I--LEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGRE 449
G+EF D G +Q + +R PS K LV+ + E
Sbjct: 585 FKSFTGREF-----DEMGPAKQR---AACRSAVLFSRVEPSHKSELVE-----LLQEQGE 631
Query: 450 VVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYD 509
+VA+TGDG ND PALKKAD+G AMG +GT+VAKEASD++L DDNF++IV AV GR +Y+
Sbjct: 632 IVAMTGDGVNDAPALKKADIGIAMG-SGTEVAKEASDMVLADDNFATIVAAVEEGRAIYN 690
Query: 510 SISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPD 569
++ +F+++ ++ N+ V+ F+ A L VQ+LWVNL+ D L + AL P D
Sbjct: 691 NMKQFIRYMISSNIGEVVCIFLTAALGIPEGLIPVQLLWVNLVTDGLPATALGFNPPDKD 750
Query: 570 LLLRKPYGRTKALIS 584
++ + P + LI+
Sbjct: 751 IMWKPPRRPDEPLIT 765
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 322 bits (828), Expect = 6e-99
Identities = 197/615 (32%), Positives = 308/615 (50%), Gaps = 77/615 (12%)
Query: 65 REFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAIC 124
++++ F + V++ V A+PEGLP+ VT++LA V +M K +VR L + ET+G+ IC
Sbjct: 269 KDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAIVRKLPSVETLGSVNVIC 328
Query: 125 SDKTGTLTTNRMTAVQAYVCEVQYK--NIPKYEDIPEDIASKIVEGISVNSGYTSKIMAP 182
SDKTGTLT N MT + + + + N E I V + + A
Sbjct: 329 SDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAG 388
Query: 183 ---ENA---NELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRV--YTFNSVRK 234
NA NE +GN T+ AL+ ++ G D E + RV F+S RK
Sbjct: 389 NLCNNAKFRNEADTLLGNPTDVALIELLMKFGL-------DDLRETYIRVAEVPFSSERK 441
Query: 235 SMSTVI--PKKNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMAC 292
M+ + + KGA E +LK C+Y ++G T+ + + E MA
Sbjct: 442 WMAVKCVHRQDRSEMCFMKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAE-MAS 500
Query: 293 DGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEA 352
GLR I+ A P LT L ++GI DP RP V EA
Sbjct: 501 AGLRVIAFASG-----------------PEKGQ-------LTFLGLVGINDPPRPGVKEA 536
Query: 353 IKKCQRAGITIRMVTGDNINTARSIATKCGI-VKPGEDYLILEGKEFNRRVRDNNGEVQQ 411
+ G+ I M+TGD+ TA SIA + G+ K + + G++ + +
Sbjct: 537 VTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQS---VSGEKLD--------AMDD 585
Query: 412 NLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGF 471
L ++ P++ V AR+SP K +VK + +VVA+TGDG ND PALK AD+G
Sbjct: 586 QQLSQIVPKVAVFARASPEHKMKIVKAL-----QKRGDVVAMTGDGVNDAPALKLADIGV 640
Query: 472 AMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFI 531
AMG TGTDVAKEA+D+ILTDD+F++I+ A+ G+ ++++I F+ FQL+ +V A+ + +
Sbjct: 641 AMGQTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIKNFITFQLSTSVAALSLIAL 700
Query: 532 GACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNI 591
+PL A+Q+LW+N++MD + +L E D++ + P R +++K ++K I
Sbjct: 701 ATLMGFPNPLNAMQILWINILMDGPPAQSLGVEPVDKDVMRKPPRPRNDKILTKDLIKKI 760
Query: 592 IGQAIYQLVIIFGILF-FGDKLLDIPTGRGAEYGSLPTQHFTIIFNTFVLMTLFNEINAR 650
+ AI +I+ G LF F ++ D G + + T+ F FV +FN + R
Sbjct: 761 LVSAI---IIVVGTLFVFVREMQD---------GVITARDTTMTFTCFVFFDMFNALACR 808
Query: 651 KIHGQRNVFE-GLFT 664
++VFE G F+
Sbjct: 809 --SQTKSVFEIGFFS 821
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 312 bits (802), Expect = 1e-98
Identities = 146/552 (26%), Positives = 226/552 (40%), Gaps = 155/552 (28%)
Query: 12 EKKSVLQAKLTKLAIQIG-YAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRF 70
E ++ LQ+K +L I +A+ + L + W +
Sbjct: 145 ETRTPLQSKRDRLENFIFILFLLLLALAVFLYLFIRG-----------WDP---NSIFKA 190
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
+ + VLV+ VP LP AVT++LA ++ K LVR+L+A E +G +CSDKTGT
Sbjct: 191 LLRALIVLVIVVPPALPAAVTVALAVGDARLAKKGILVRNLNALEELGKVDYLCSDKTGT 250
Query: 131 LTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPK 190
LT N+MT Y+ + N +
Sbjct: 251 LTKNKMTLQGVYIDGGKEDNSSSLVAC-----------------------------DNNY 281
Query: 191 QVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIPKKNG-YRVY 249
G+ E ALL + + + ++ V+ F+SV K MS ++ +G ++
Sbjct: 282 LSGDPMEKALLKSA---ELVGKADKGNKEYKIL-DVFPFSSVLKRMSVIVETPDGSDLLF 337
Query: 250 TKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDK 309
KGA E IL++C+ +A GLR ++ A K+ D
Sbjct: 338 VKGAPEFILERCNN-------------------YEEKYLELARQGLRVLAFASKELEDD- 377
Query: 310 AEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGD 369
L L +I EDP+RP+ E I++ + AGI + M+TGD
Sbjct: 378 -----------------------LEFLGLITFEDPLRPDAKETIEELKAAGIKVVMITGD 414
Query: 370 NINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSP 429
N+ TA++IA + GI V AR SP
Sbjct: 415 NVLTAKAIAKELGID--------------------------------------VFARVSP 436
Query: 430 SDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIIL 489
K +V+ + +VA+TGDG ND PALKKADVG AMG AK A+DI+L
Sbjct: 437 EQKLQIVEALQKKG-----HIVAMTGDGVNDAPALKKADVGIAMG------AKAAADIVL 485
Query: 490 TDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWV 549
DD+ S+IVKAV GR ++ +I + + + N++ + +A + +
Sbjct: 486 LDDDLSAIVKAVKEGRKIFSNIKSNIFWAIAYNLILIPLALLLIV--------------I 531
Query: 550 NLIMDTLASLAL 561
L++ LA+LAL
Sbjct: 532 ILLLPMLAALAL 543
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 236 bits (604), Expect = 8e-67
Identities = 177/541 (32%), Positives = 274/541 (50%), Gaps = 63/541 (11%)
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
F++G+ +V VPEGL VT+ L + K+M + N LV++L+A ET+G+ + ICSDKTGT
Sbjct: 297 FLIGI--IVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGT 354
Query: 131 LTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMA--------- 181
LT NRMT V + + N D ED + + S S+I
Sbjct: 355 LTQNRMT-----VAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLCNRAVFKA 409
Query: 182 -PENANELPKQV-GNKTECALLGFVVAIGKNYQTVRDDLPE--EVFTRVYTFNSVRKSMS 237
EN L + V G+ +E ALL + + +R+ P+ E+ FNS K
Sbjct: 410 GQENVPILKRAVAGDASESALLKCIELCLGSVMEMRERNPKVVEI-----PFNSTNKYQL 464
Query: 238 TV----IPKKNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACD 293
++ P+ + + KGA E IL++CS I +G + ++++ +N +
Sbjct: 465 SIHENEDPRDPRHLLVMKGAPERILERCSSIL-IHGKEQPLDEELK-EAFQNAYLELGGL 522
Query: 294 GLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNI-VSHLTCLCVIGIEDPVRPEVPEA 352
G R + + ++ EG D+ N +L + +I + DP R VP+A
Sbjct: 523 GERVLGFCHLYLPDEQ------FPEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDA 576
Query: 353 IKKCQRAGITIRMVTGDNINTARSIATKCGIVKPG----EDY---LILEGKEFNRR---- 401
+ KC+ AGI + MVTGD+ TA++IA GI+ G ED L + + N R
Sbjct: 577 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKA 636
Query: 402 -------VRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVT 454
++D E +L K + V AR+SP K +V+G + A +VAVT
Sbjct: 637 CVVHGSDLKDMTSEQLDEIL-KYHTEI-VFARTSPQQKLIIVEGC--QRQGA---IVAVT 689
Query: 455 GDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKF 514
GDG ND PALKKAD+G AMGI G+DV+K+A+D+IL DDNF+SIV V GR ++D++ K
Sbjct: 690 GDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKS 749
Query: 515 LQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRK 574
+ + LT N+ + I A PL + +L ++L D + +++LA E D++ R+
Sbjct: 750 IAYTLTSNIPEITPFLIFIIANIPLPLGTITILCIDLGTDMVPAISLAYEKAESDIMKRQ 809
Query: 575 P 575
P
Sbjct: 810 P 810
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 229 bits (585), Expect = 3e-64
Identities = 130/391 (33%), Positives = 199/391 (50%), Gaps = 39/391 (9%)
Query: 223 FTRVYTFNSVRKSMSTVIPKKNG--YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQG 280
F + F+S K M+++ +G Y +Y KGA E I++ CS G++G +D
Sbjct: 527 FIAEFPFDSEIKRMASIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDR 586
Query: 281 RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIG 340
L+ +E +A +GLR ++ A K F +Q+ E ES++ L +IG
Sbjct: 587 ELIIANMESLAAEGLRVLAFASKSFDKADNNDDQLKNETLNRATAESDLEF----LGLIG 642
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPG--------EDYLI 392
I DP R E A++KC +AGI + M+TGD TA++IA + GI+ P D ++
Sbjct: 643 IYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMV 702
Query: 393 LEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVA 452
+ G +F+ + +D + V+AR +P K +++ + K A
Sbjct: 703 MTGSQFD--------ALSDEEVDDLKALCLVIARCAPQTKVKMIEALHRRK-----AFCA 749
Query: 453 VTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIS 512
+TGDG ND P+LK A+VG AMGI G+DVAK+ASDI+L+DDNF+SI+ A+ GR ++D+I
Sbjct: 750 MTGDGVNDSPSLKMANVGIAMGINGSDVAKDASDIVLSDDNFASILNAIEEGRRMFDNIM 809
Query: 513 KFLQFQLTVNVVAVIVAFIGACAVQDS------PLKAVQMLWVNLIMDTLASLALATEMP 566
KF+ L NV I+ IG A +D PL V++LW +I ++ L E
Sbjct: 810 KFVLHLLAENVAEAILLIIG-LAFRDENGKSVFPLSPVEILWCIMITSCFPAMGLGLEKA 868
Query: 567 TPDLLLRKPYGR-----TKALISKTMMKNII 592
PDL+ R P+ K LI
Sbjct: 869 APDLMDRLPHDNEVGIFQKELIIDMFAYGFF 899
Score = 68.5 bits (167), Expect = 6e-12
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 20/159 (12%)
Query: 17 LQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFIVGVT 76
L KL+KLA+ + IAI+ +I+++ + KF ++ E AIY +
Sbjct: 275 LHRKLSKLAVILFC----IAIIFAIIVMAAH---KFDVDKE--VAIY----------AIC 315
Query: 77 VLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRM 136
+ + +PE L +++++A M K N +VR LDA E +G ICSDKTGT+T +M
Sbjct: 316 LAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKM 375
Query: 137 TAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGY 175
A Q ++ +I +D + V GI S Y
Sbjct: 376 IARQIWIPRFGTISIDNSDD-AFNPNEGNVSGIPRFSPY 413
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 153 bits (388), Expect = 8e-39
Identities = 123/490 (25%), Positives = 213/490 (43%), Gaps = 65/490 (13%)
Query: 66 EFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICS 125
+++ F+ + V V PE LP+ V+ +LA M K +V+ L A + G +C+
Sbjct: 282 DWLEAFLFALAVAVGLTPEMLPMIVSSNLAKGAINMSKKKVIVKELSAIQNFGAMDILCT 341
Query: 126 DKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENA 185
DKTGTLT +++ + K+ D + + ++++ +NS + +
Sbjct: 342 DKTGTLTQDKIE-------------LEKHIDSSGETSERVLKMAWLNSYFQTGW-----K 383
Query: 186 NELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIP-KKN 244
N L V K + + D++P F+ R+ +S V+ +
Sbjct: 384 NVLDHAVLAKLD----ESAARQTASRWKKVDEIP---------FDFDRRRLSVVVENRAE 430
Query: 245 GYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKD 304
R+ KGA E +L C++ G + ++ + ++++ M G+R I++A K
Sbjct: 431 VTRLICKGAVEEMLTVCTHKR-FGGAVVTLSESEK-SELQDMTAEMNRQGIRVIAVATK- 487
Query: 305 FVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIR 364
T K E D DE L +G DP + EAI + GI ++
Sbjct: 488 --TLKVG------EADFTKTDEEQ----LIIEGFLGFLDPPKESTKEAIAALFKNGINVK 535
Query: 365 MVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVL 424
++TGDN I + GI D+L+ E E+ L + + +
Sbjct: 536 VLTGDNEIVTARICQEVGI--DANDFLLGADIE----------ELSDEELARELRKYHIF 583
Query: 425 ARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEA 484
AR +P + K I + V GDG ND PAL+KADVG ++ T D+AKEA
Sbjct: 584 ARLTP-----MQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVD-TAADIAKEA 637
Query: 485 SDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAV 544
SDIIL + + + + V+ GRN + +I K+L+ + N V + + + P+ ++
Sbjct: 638 SDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSNFGNVFSVLVASAFIPFLPMLSL 697
Query: 545 QMLWVNLIMD 554
+L NL+ D
Sbjct: 698 HLLIQNLLYD 707
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 151 bits (384), Expect = 2e-38
Identities = 125/531 (23%), Positives = 216/531 (40%), Gaps = 126/531 (23%)
Query: 21 LTKLAIQIG-YAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFIVGVTVLV 79
L K+ +IG + I +L ++ L+ F E FRE ++F +V +LV
Sbjct: 199 LQKILSKIGLFLIVLIGVLVLIELVVL-----FFGRGE-----SFREGLQFALV---LLV 245
Query: 80 VAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAV 139
+P +P +++++A ++ K +V L A E + +CSDKTGTLT N+++
Sbjct: 246 GGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIEELAGMDILCSDKTGTLTLNKLS-- 303
Query: 140 QAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPKQVGNKTECA 199
+ +D+ + + S+ E+ + + V
Sbjct: 304 ------IDEILPFFNGFDKDDVL--------LYAALASRE---EDQDAIDTAVLGSA--- 343
Query: 200 LLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRK-SMSTVIPKKNG--YRVYTKGASEI 256
K+ + RD F F+ V K + +TV + G ++V TKGA ++
Sbjct: 344 ---------KDLKEARDGYKVLEFV---PFDPVDKRTEATVEDPETGKRFKV-TKGAPQV 390
Query: 257 ILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVH 316
IL C K V ++ +A G R + +A D E + H
Sbjct: 391 ILDLC------------DNKKEIEEKVEEKVDELASRGYRALGVARTD------EEGRWH 432
Query: 317 IEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARS 376
G ++ + DP R + E I++ + G+ ++MVTGD++ A+
Sbjct: 433 FLG------------------LLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKE 474
Query: 377 IATKCGI-----------VKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLA 425
A + G+ D L E V D +G + V+P
Sbjct: 475 TARRLGLGTNIYTADVLLKGDNRDDLPSGLGEM---VEDADGFAE------VFPE----- 520
Query: 426 RSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEAS 485
KY +V+ + +V +TGDG ND PALKKADVG A+ TD A+ A+
Sbjct: 521 -----HKYEIVEILQKRG-----HLVGMTGDGVNDAPALKKADVGIAVA-GATDAARSAA 569
Query: 486 DIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAV 536
DI+LT+ S IV A++ R ++ + ++ +++ + IV F G +
Sbjct: 570 DIVLTEPGLSVIVDAILESRKIFQRMKSYVIYRIAETI--RIVFFFGLLIL 618
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 139 bits (351), Expect = 4e-34
Identities = 119/470 (25%), Positives = 201/470 (42%), Gaps = 93/470 (19%)
Query: 78 LVVAV---PEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTN 134
L VAV PE LP+ VT +LA K+ K +V+ LDA + G +C+DKTGTLT +
Sbjct: 326 LSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQD 385
Query: 135 RM-----TAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELP 189
++ T + E +++ +NS Y + + N L
Sbjct: 386 KIVLENHTDISGKTSE------------------RVLHSAWLNSHYQTGL-----KNLLD 422
Query: 190 KQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIPKKN-GYRV 248
V E ++ +Q + D++P F+ R+ MS V+ + +++
Sbjct: 423 TAV---LEGVDEESARSLASRWQKI-DEIP---------FDFERRRMSVVVAENTEHHQL 469
Query: 249 YTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTD 308
KGA E IL CS + NG + M R ++ V + + GLR +++A K
Sbjct: 470 ICKGALEEILNVCSQVR-HNGEIVPLDDIMLRR-IKRVTDTLNRQGLRVVAVATKYLPAR 527
Query: 309 KAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTG 368
+ + + DES+ L I DP + A+K + +G+T++++TG
Sbjct: 528 EGDYQRA---------DESD----LILEGYIAFLDPPKETTAPALKALKASGVTVKILTG 574
Query: 369 DNINTARSIATKCGI----VKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVL 424
D+ A + + G+ V G D L E +
Sbjct: 575 DSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTT----------------LF 618
Query: 425 ARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEA 484
AR +P K +V + VV GDG ND PAL+ AD+G ++ D+A+EA
Sbjct: 619 ARLTPMHKERIVT-----LLKREGHVVGFMGDGINDAPALRAADIGISVD-GAVDIAREA 672
Query: 485 SDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTV-----NVVAVIVA 529
+DIIL + + + + V+ GR + ++ K++ ++T NV +V+VA
Sbjct: 673 ADIILLEKSLMVLEEGVIEGRRTFANMLKYI--KMTASSNFGNVFSVLVA 720
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 133 bits (337), Expect = 2e-32
Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 43/197 (21%)
Query: 336 LCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEG 395
+ VI + D +RP+ EAI + GI + M+TGDN TA +IA + GI
Sbjct: 529 VGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGI------------ 576
Query: 396 KEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTG 455
V A P DK +V+ ++ A VA+ G
Sbjct: 577 -------------------------DEVRAELLPEDKAEIVR-----ELQAEGRKVAMVG 606
Query: 456 DGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFL 515
DG ND PAL ADVG AMG +GTDVA EA+D++L D+ S++ +A+ R I + L
Sbjct: 607 DGINDAPALAAADVGIAMG-SGTDVAIEAADVVLMRDDLSAVPEAIDLSRATRRIIKQNL 665
Query: 516 QFQLTVNVVAVIVAFIG 532
+ N +A+ +A G
Sbjct: 666 FWAFGYNAIAIPLAAGG 682
Score = 49.5 bits (119), Expect = 5e-06
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 35 IAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFIVGVTVLVVAVPEGLPLAVTLSL 94
IA LT + W ++ + VLV+A P L LA ++
Sbjct: 336 IAALTFAL----------------WPLFGGGDWETALYRALAVLVIACPCALGLATPTAI 379
Query: 95 AYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMT 137
+ + + L++ +A E + + DKTGTLT +
Sbjct: 380 LVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPE 422
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 121 bits (306), Expect = 7e-32
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 539 SPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQ 598
PL +Q+LW+NL+ D L +LAL E P PDL+ R P + L S+ +++ I+ Q +
Sbjct: 2 LPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKLLRRILLQGLLI 61
Query: 599 LVIIFGILFFGDKLLDIPTGRGAEYGSLPTQHFTIIFNTFVLMTLFNEINARKIH 653
++ + F G I S T+ FNT VL LFN +NAR +
Sbjct: 62 AIVTLLVFFLGLLGFGI---------SESGLAQTMAFNTLVLSQLFNALNARSLR 107
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 125 bits (315), Expect = 3e-30
Identities = 77/246 (31%), Positives = 108/246 (43%), Gaps = 48/246 (19%)
Query: 292 CDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHL----TCLCVIGIEDPVRP 347
DG + I F+ E + + + V + L VI + D +RP
Sbjct: 328 VDGGEEVRIGNPRFLELAIEPISASPDLLNEGESQGKTVVFVAVDGELLGVIALRDQLRP 387
Query: 348 EVPEAIKKCQRAG-ITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNN 406
E EAI +RAG I + M+TGDN + A ++A + GI D
Sbjct: 388 EAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGI--------------------DE- 426
Query: 407 GEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKK 466
V A P DK +VK ++ VVA+ GDG ND PAL
Sbjct: 427 ----------------VHAELLPEDKLAIVK-----ELQEEGGVVAMVGDGINDAPALAA 465
Query: 467 ADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAV 526
ADVG AMG G+DVA EA+DI+L +D+ SS+ A+ R I + L + L N+VA+
Sbjct: 466 ADVGIAMG-AGSDVAIEAADIVLLNDDLSSLPTAIDLSRKTRRIIKQNLAWALGYNLVAI 524
Query: 527 IVAFIG 532
+A G
Sbjct: 525 PLAAGG 530
Score = 55.3 bits (134), Expect = 7e-08
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
+ VLVVA P L LA +++ ++ + L++ DA E + + DKTGT
Sbjct: 197 LYRALAVLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGT 256
Query: 131 LTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIAS 163
LTT + T V E E++ A+
Sbjct: 257 LTTGKPTVVD---IEPLDDASISEEELLALAAA 286
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 115 bits (291), Expect = 9e-27
Identities = 139/536 (25%), Positives = 238/536 (44%), Gaps = 106/536 (19%)
Query: 68 VRFFIVGVT----------VLVVAV---PEGLPLAVTLSLAYSVKKMMKDNNLVRHLDAC 114
V I G T L VAV PE LP+ V+ +LA M + +V+ L+A
Sbjct: 304 VVLLINGFTKGDWLEALLFALAVAVGLTPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAI 363
Query: 115 ETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSG 174
+ G +C+DKTGTLT +R+ + E + ++ +D ++++ +NS
Sbjct: 364 QNFGAMDVLCTDKTGTLTQDRI------ILE-HHLDVSGRKD------ERVLQLAWLNSF 410
Query: 175 YTSKIMAPENANELPKQVGNKTECALLGFVVAIGK-----NYQTVRDDLPEEVFTRVYTF 229
+ S + N + A++ F + Y+ V D+LP F
Sbjct: 411 HQSG-------------MKNLMDQAVVAFAEGNPEIVKPAGYRKV-DELP---------F 447
Query: 230 NSVRKSMSTVIPKKNG-YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIE 288
+ VR+ +S V+ G + + KGA E +L +++ R+G + + + + + E
Sbjct: 448 DFVRRRLSVVVEDAQGQHLLICKGAVEEMLAVATHV--RDGDTVRPLDEARRERLLALAE 505
Query: 289 PMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIV--SHLTCLCVIGIEDPVR 346
DG R + +A ++ ++ Q DE ++V LT L DP +
Sbjct: 506 AYNADGFRVLLVATREIPGGESR-AQYST------ADERDLVIRGFLTFL------DPPK 552
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNN 406
AI + G+ ++++TGDN I + G+ +PGE L G E +
Sbjct: 553 ESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGL-EPGE---PLLGTEI-----EAM 603
Query: 407 GEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKK 466
+ L + V A+ +P K ++K + A V GDG ND PAL+
Sbjct: 604 DDAA---LAREVEERTVFAKLTPLQKSRVLKAL-----QANGHTVGFLGDGINDAPALRD 655
Query: 467 ADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTV----- 521
ADVG ++ +G D+AKE++DIIL + + + + V+ GR + +I K+L +T
Sbjct: 656 ADVGISVD-SGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYL--NMTASSNFG 712
Query: 522 NVVAVIV--AFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKP 575
NV +V+V AFI P+ A+ +L NL+ D ++ L+L + + LRKP
Sbjct: 713 NVFSVLVASAFIPF-----LPMLAIHLLLQNLMYD-ISQLSLPWDKMDKE-FLRKP 761
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 115 bits (291), Expect = 1e-26
Identities = 139/647 (21%), Positives = 231/647 (35%), Gaps = 137/647 (21%)
Query: 77 VLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRM 136
++ + VP LP +++ + S+ ++ K G C DKTGTLT + +
Sbjct: 405 IITIVVPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGL 464
Query: 137 TAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPKQVGNKT 196
+ + + S + ++ T K+ +L VG+
Sbjct: 465 DLRGVQGLSGNQEFLKIVTEDSSLKPSITHKALATCHSLT-KL-----EGKL---VGDPL 515
Query: 197 ECALLGFVVAI-----------GKNYQTVRDDLPEEV-FTRVYTFNSVRKSMSTVIPKKN 244
+ + DD P+E+ R + F+S + MS VI N
Sbjct: 516 DKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSSALQRMS-VIVSTN 574
Query: 245 GYRV---YTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIA 301
R + KGA E I C E D Q V++ +G R +++A
Sbjct: 575 DERSPDAFVKGAPETIQSLC--------SPETVPSDYQ-----EVLKSYTREGYRVLALA 621
Query: 302 YKDFVTDKAEINQV-HIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAG 360
YK+ K + + + D ESN LT L I E+P++P+ E IK+ +RA
Sbjct: 622 YKEL--PKLTLQKAQDLSRD---AVESN----LTFLGFIVFENPLKPDTKEVIKELKRAS 672
Query: 361 ITIRMVTGDNINTARSIATKCGIVKPGEDYLIL---------EGKEFNRRVRD-----NN 406
I M+TGDN TA +A +CGIV P + LIL + + V D +
Sbjct: 673 IRTVMITGDNPLTAVHVARECGIVNP-SNTLILAEAEPPESGKPNQIKFEVIDSIPFAST 731
Query: 407 GEVQ---------------------------------QNLLDKVWPRLRVLARSSPSDKY 433
LL ++ V AR +P K
Sbjct: 732 QVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKE 791
Query: 434 TLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAM-----GITGTDVAKEASDII 488
TLV+ + V + GDG ND ALK+ADVG ++ + +K AS
Sbjct: 792 TLVELLQKLD-----YTVGMCGDGANDCGALKQADVGISLSEAEASVAAPFTSKLAS--- 843
Query: 489 LTDDNFSSIVKAVMWGR-NVYDSISKF---LQFQLTVNVVAVIVAFIGACAVQDSPLKAV 544
S + + GR + S F + L I+ IG S L
Sbjct: 844 -----ISCVPNVIREGRCALVTSFQMFKYMALYSLIQFYSVSILYLIG------SNLGDG 892
Query: 545 QMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFG 604
Q L ++L++ +L ++ P L +P L S ++ +++ Q + ++
Sbjct: 893 QFLTIDLLLIFPVALLMSRNKPLKKLSKERPPSN---LFSVYILTSVLIQFVLHILSQVY 949
Query: 605 ILFFGDKL----LDIPTGRGAEYGSLPTQHFTIIFNTFVLMTLFNEI 647
++F + P E P T++F ++ F +
Sbjct: 950 LVFELHAQPWYKPENPVDLEKEN--FPNLLNTVLF----FVSSFQYL 990
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 114 bits (287), Expect = 1e-26
Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 43/193 (22%)
Query: 337 CVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGK 396
V+ + D ++PE E I+ +R GI M+TGDN TA+++A + GI
Sbjct: 407 GVLALADQLKPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIEN----------- 455
Query: 397 EFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGD 456
V A P DK L+K K+ +VVA+ GD
Sbjct: 456 --------------------------VRAEVLPDDKAALIK-----KLQEKGKVVAMVGD 484
Query: 457 GTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQ 516
G ND PAL +ADVG A+G GTDVA EA+D++L ++ + + A+ R I + L
Sbjct: 485 GINDAPALAQADVGIAIG-AGTDVAIEAADVVLLRNDLNDVATAIDLSRKTLRRIKQNLL 543
Query: 517 FQLTVNVVAVIVA 529
+ NV+A+ +A
Sbjct: 544 WAFGYNVIAIPIA 556
Score = 56.1 bits (136), Expect = 4e-08
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 34 TIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFIVGVTVLVVAVPEGLPLAVTLS 93
IA++T VI W I +FV V VTVL++A P L LA
Sbjct: 215 AIALITFVI----------------W-LILGADFVFALEVAVTVLIIACPCALGLATPTV 257
Query: 94 LAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAV 139
+A + K+ L++ DA E N + DKTGTLT + T
Sbjct: 258 IAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPTVT 303
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 112 bits (281), Expect = 2e-25
Identities = 167/710 (23%), Positives = 280/710 (39%), Gaps = 153/710 (21%)
Query: 59 WKAIYFREFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNL----------- 107
A F F+ F I+ ++ +P + L V+L L SV+ +++L
Sbjct: 292 AAANGFFSFLTFLILFSSL----IP--ISLYVSLELVKSVQAYFINSDLQMYHEKTDTPA 345
Query: 108 -VRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQY-KNIPKYEDI-------- 157
VR + E +G I SDKTGTLT N M + + V Y + +D
Sbjct: 346 SVRTSNLNEELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDGIRERLGSY 405
Query: 158 -----PEDIASKIVEGIS---VNSGYTSKIMAP---------------------ENANEL 188
+ SK + V+ T+K A + E+
Sbjct: 406 VENENSMLVESKGFTFVDPRLVDLLKTNKPNAKRINEFFLALALCHTVVPEFNDDGPEEI 465
Query: 189 PKQVGNKTECAL------LGFVVAIGKNYQTVRDDLPEEVFTRVYT------FNSVRKSM 236
Q + E AL +GFV + +++ + T+ Y FNS RK M
Sbjct: 466 TYQAASPDEAALVKAARDVGFVF-FERTPKSISLLIEMHGETKEYEILNVLEFNSDRKRM 524
Query: 237 STVIPKKNG-YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGL 295
S ++ +G ++ KGA +I K+ S G N E+ + +E A +GL
Sbjct: 525 SVIVRNPDGRIKLLCKGADTVIFKRLSS--GGNQVNEETKEH---------LENYASEGL 573
Query: 296 RTISIAYKDFVTDKAEI-NQVHIEGDPNWDDES--------NIVSHLTCLCVIGIEDPVR 346
RT+ IAY++ ++ E N+ + E D +I L L IED ++
Sbjct: 574 RTLCIAYRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQ 633
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLIL---------EGKE 397
VPE I+ ++AGI I ++TGD + TA +I C ++ + +++ +
Sbjct: 634 EGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSDSLDATRSVEA 693
Query: 398 FNRRVRDNNGEVQQNLLDK---------------VWPRLR------------VLA-RSSP 429
+ + E NL D + L V+ R SP
Sbjct: 694 AIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSP 753
Query: 430 SDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTD--VAKEASDI 487
S K +V+ ++ K S G+ +A+ GDG ND +++ADVG +GI+G + A ASD
Sbjct: 754 SQKADVVR-LV--KKSTGKTTLAI-GDGANDVSMIQEADVG--VGISGKEGMQAVMASDF 807
Query: 488 ILTDDNFSSIVKAVMW-GRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQ- 545
+ F + K ++ GR Y ISK + + N++ I+ F + S +
Sbjct: 808 AIG--QFRFLTKLLLVHGRWSYKRISKMILYFFYKNLIFAIIQFWYSFYNGFSGQTLYEG 865
Query: 546 --MLWVNLIMDTLASLALAT--EMPTPDLLLRKP--YGRT---KALISKTMMKNIIGQAI 596
M+ N+ L ++L + + L LR P Y + +KT ++ I
Sbjct: 866 WYMVLYNVFFTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKTFWGWML-DGI 924
Query: 597 YQLVIIFGILFFGDKLLDI-PTGRGAEYGSLPTQHFT---IIFNTFVLMT 642
YQ ++IF F L D +G ++ S+ FT +I N + +
Sbjct: 925 YQSLVIFFFPMFAYILGDFVSSGSVDDFSSVGVIVFTALVVIVNLKIALE 974
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 103 bits (260), Expect = 3e-23
Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 43/196 (21%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGIT-IRMVTGDNINTARSIATKCGIVKPGEDYLILEGK 396
I + D RP+ EAI + + GI + M+TGD A +A + GI
Sbjct: 356 YILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI------------- 402
Query: 397 EFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGD 456
EV LL P DK +VK ++ VA+ GD
Sbjct: 403 ----------DEVHAELL--------------PEDKLEIVK-----ELREKYGPVAMVGD 433
Query: 457 GTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQ 516
G ND PAL ADVG AMG +G+DVA E +D++L +D+ S + +A+ R + + +
Sbjct: 434 GINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAIRLARRTRRIVKQNVV 493
Query: 517 FQLTVNVVAVIVAFIG 532
L + ++ +++A G
Sbjct: 494 IALGIILLLILLALFG 509
Score = 50.8 bits (122), Expect = 2e-06
Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 4 VEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIY 63
V + E+ +K+ Q + + A T +L + + I + V + W
Sbjct: 148 VNLVEEAQSRKAKTQRFIDRFA-----RYYTPVVLAIALAI--WLVPGLLKRWPFW---- 196
Query: 64 FREFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAI 123
+ +LVVA P L ++ + ++ + L++ A E + +
Sbjct: 197 -------VYRALVLLVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTV 249
Query: 124 CSDKTGTLTTNRMTAVQAYVCEV 146
DKTGTLTT R V EV
Sbjct: 250 AFDKTGTLTTGRPKVVDVVPAEV 272
>gnl|CDD|222006 pfam13246, Hydrolase_like2, Putative hydrolase of sodium-potassium
ATPase alpha subunit. This is a putative hydrolase of
the sodium-potassium ATPase alpha subunit.
Length = 91
Score = 83.4 bits (207), Expect = 1e-19
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 183 ENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVI-- 240
+ +G+ TE ALL F +G + + +R P FNS RK MSTV
Sbjct: 11 NEEKNGGEIIGDPTESALLVFAEKLGIDVEELRARYPRV---AEIPFNSERKRMSTVHKL 67
Query: 241 PKKNGYRVYTKGASEIILKKCSYI 264
+GYR++ KGA E IL++CS I
Sbjct: 68 EDDDGYRLFVKGAPERILERCSTI 91
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 83.8 bits (208), Expect = 3e-18
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 4 VEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIY 63
+ E+ K+ LQ L KLA + +AIL +I
Sbjct: 127 ARLVEEAKSAKTPLQRLLDKLAKILVPIVLALAILVFLIWF-----------------FR 169
Query: 64 FREFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACET 116
+F+ + + VLV A PE LPLAV L+LA ++ K LV++L A ET
Sbjct: 170 GGDFLEALLRALAVLVAACPEALPLAVPLALAVGAGRLAKKGILVKNLSALET 222
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 85.8 bits (213), Expect = 2e-17
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 43/168 (25%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
VI ++D V+P + E + ++ GI M+TGDN TA +IA + G+ +D++
Sbjct: 441 VIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGV----DDFI------ 490
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
A ++P DK L++ + A +VA+TGDG
Sbjct: 491 ---------------------------AEATPEDKLALIR-----QEQAEGRLVAMTGDG 518
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGR 505
TND PAL +ADVG AM +GT AKEA++++ D N + +++ V G+
Sbjct: 519 TNDAPALAQADVGVAMN-SGTQAAKEAANMVDLDSNPTKLIEVVEIGK 565
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 81.4 bits (202), Expect = 5e-16
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 43/158 (27%)
Query: 336 LCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEG 395
L VI ++D V+P + E + ++ GI M+TGDN TA +IA + G+ +D+L
Sbjct: 437 LGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGV----DDFL---- 488
Query: 396 KEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTG 455
A ++P DK L++ + A +VA+TG
Sbjct: 489 -----------------------------AEATPEDKLALIR-----QEQAEGRLVAMTG 514
Query: 456 DGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
DGTND PAL +ADVG AM +GT AKEA +++ D N
Sbjct: 515 DGTNDAPALAQADVGVAMN-SGTQAAKEAGNMVDLDSN 551
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. This model
describes the P-type ATPase subunit of the complex
responsible for translocating potassium ions across
biological membranes in microbes. In E. coli and other
species, this complex consists of the proteins KdpA,
KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while
KdpA is the potassium-ion translocating subunit. The
function of KdpC is unclear, although cit has been
suggested to couple the ATPase subunit to the
ion-translocating subunit , while KdpF serves to
stabilize the complex. The potassium P-type ATPases have
been characterized as Type IA based on a phylogenetic
analysis which places this clade closest to the
heavy-metal translocating ATPases (Type IB). Others
place this clade closer to the Na+/K+ antiporter type
(Type IIC) based on physical characteristics. This model
is very clear-cut, with a strong break between trusted
hits and noise. All members of the seed alignment, from
Clostridium, Anabaena and E. coli are in the
characterized table. One sequence above trusted,
OMNI|NTL01TA01282, is apparently mis-annotated in the
primary literature, but properly annotated by TIGR
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 675
Score = 77.6 bits (191), Expect = 1e-14
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 44/196 (22%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
VI ++D V+ + E + ++ GI M+TGDN TA +IA + G+ +D++
Sbjct: 440 VIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGV----DDFI------ 489
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
A ++P DK L++ + A ++VA+TGDG
Sbjct: 490 ---------------------------AEATPEDKIALIR-----QEQAEGKLVAMTGDG 517
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQF 517
TND PAL +ADVG AM +GT AKEA++++ D + + +++ V G+ + + F
Sbjct: 518 TNDAPALAQADVGVAMN-SGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTF 576
Query: 518 QLTVNVVAVIVAFIGA 533
+ N VA A I A
Sbjct: 577 SIA-NDVAKYFAIIPA 591
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 75.0 bits (185), Expect = 6e-14
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 45/153 (29%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
+I ++D +R + +AI + + GI M+TGDN A +IA + GI D+
Sbjct: 562 LIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGI-----DF------- 609
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
+ LL P DK V ++++ +A+ GDG
Sbjct: 610 ------------RAGLL--------------PEDKVKAV-----TELNQ-HAPLAMVGDG 637
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILT 490
ND PA+K A +G AMG +GTDVA E +D LT
Sbjct: 638 INDAPAMKAASIGIAMG-SGTDVALETADAALT 669
Score = 35.7 bits (83), Expect = 0.077
Identities = 45/203 (22%), Positives = 72/203 (35%), Gaps = 69/203 (33%)
Query: 74 GVTVLVVAVPEGL----PLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTG 129
G+T+L++ P L P A+T LA + ++ L++ A E +G T + DKTG
Sbjct: 390 GLTLLLIGCPCALVISTPAAITSGLAAAARR----GALIKGGAALEQLGRVTTVAFDKTG 445
Query: 130 TLT--TNRMTAV---------------------------QAYVCEVQYKNIPKYEDIPED 160
TLT ++T + QA V E Q + + IPE
Sbjct: 446 TLTEGKPQVTDIHPATGISESELLALAAAVEQGSTHPLAQAIVREAQVRGLA----IPEA 501
Query: 161 IASKIVEGISVN---SGYTSKIMAPENANELPKQV---------GNKTECALLGFVVAIG 208
+ + + G + +G I AP L KT VV +
Sbjct: 502 ESQRALAGSGIEGQVNGERVLICAPGKLPPLADAFAGQINELESAGKT-------VVLVL 554
Query: 209 KNYQ---------TVRDDLPEEV 222
+N T+R D + +
Sbjct: 555 RNDDVLGLIALQDTLRADARQAI 577
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 73.2 bits (180), Expect = 2e-13
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 43/164 (26%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
++ I DP+R + A+++ +AG + M+TGDN TA +IA + GI
Sbjct: 644 LLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID------------- 690
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
V+A P K +K + S GR+V A+ GDG
Sbjct: 691 ------------------------EVIAGVLPDGKAEAIKRLQ----SQGRQV-AMVGDG 721
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
ND PAL +ADVG AMG G+DVA E + I L + + A+
Sbjct: 722 INDAPALAQADVGIAMG-GGSDVAIETAAITLMRHSLMGVADAL 764
Score = 40.5 bits (95), Expect = 0.003
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 72 IVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTL 131
++ TVL++A P L LA +S+ V + + LVR DA + + DKTGTL
Sbjct: 469 VIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTL 528
Query: 132 T 132
T
Sbjct: 529 T 529
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B;
Provisional.
Length = 673
Score = 66.3 bits (161), Expect = 3e-11
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 49/215 (22%)
Query: 326 ESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVK 385
E N + L VI ++D ++ + E ++ + GI M TGDN TA +IA + G+
Sbjct: 428 EDNEI-----LGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD- 481
Query: 386 PGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKIS 445
R +A P DK +++ +
Sbjct: 482 ------------------------------------RFVAECKPEDKINVIR-----EEQ 500
Query: 446 AGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGR 505
A +VA+TGDGTND PAL +A+VG AM +GT AKEA+++I D N + +++ V+ G+
Sbjct: 501 AKGHIVAMTGDGTNDAPALAEANVGLAMN-SGTMSAKEAANLIDLDSNPTKLMEVVLIGK 559
Query: 506 NVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSP 540
+ + F + N +A A + A + P
Sbjct: 560 QLLMTRGSLTTFSIA-NDIAKYFAILPAMFMAAMP 593
Score = 30.4 bits (68), Expect = 3.3
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 34 TIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFIVGVTVLVVAVPEGLPLAVTLS 93
T+ I+ +V++++ Y + KF + F + I L+ GL A+ ++
Sbjct: 224 TLTIIFLVVILTMYPLAKF---------LNFNLSIAMLIALAVCLIPTTIGGLLSAIGIA 274
Query: 94 LAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLT-TNRMTAVQAYVCEVQYKNIP 152
+ ++ + N L + + ET G+ + DKTGT+T NRM V ++ +
Sbjct: 275 ---GMDRVTQFNILAKSGRSVETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLV 331
Query: 153 K--YEDIPED 160
K YE D
Sbjct: 332 KAAYESSIAD 341
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 51.1 bits (122), Expect = 2e-06
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 38/171 (22%)
Query: 226 VYTFNSVRKSMSTVI--PKKNGYRVYTKGASEIILKKCSYIYGRN------GHLEKFTKD 277
++ F+S RK MS ++ P K +V+ KGA + N HL ++
Sbjct: 608 LHEFDSDRKRMSVILGCPDKT-VKVFVKGADTSMFSVIDRSLNMNVIRATEAHLHTYSSL 666
Query: 278 MQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDD-----------E 326
GLRT+ + ++ + +E Q H +
Sbjct: 667 ----------------GLRTLVVGMREL--NDSEFEQWHFSFEAASTALIGRAALLRKVA 708
Query: 327 SNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSI 377
SN+ ++LT L IED ++ VPEAI+ + AGI + ++TGD TA SI
Sbjct: 709 SNVENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISI 759
Score = 37.2 bits (86), Expect = 0.031
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 66 EFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNL----------VRHLDACE 115
E F++ V V + +P L +++ L M++D+ + R L+ E
Sbjct: 389 EIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQCRALNINE 448
Query: 116 TMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKN 150
+G + SDKTGTLT N+M A + V Y +
Sbjct: 449 DLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSD 483
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of Pseudomonas sp.
(S)-2-haloacid dehalogenase 1. The rest of the fold is
composed of the core alpha/beta domain. Those members
with the characteristic DxD triad at the N-terminus are
probably phosphatidylglycerolphosphate (PGP)
phosphatases involved in cardiolipin biosynthesis in the
mitochondria.
Length = 187
Score = 48.4 bits (115), Expect = 2e-06
Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 31/145 (21%)
Query: 324 DDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGI 383
V L L +I + DP+ P EA+K+ + AGI + ++TGDN TA +IA G+
Sbjct: 74 GATVVAVLDLVVLGLIALTDPLYPGAREALKELKEAGIKLAILTGDNRLTANAIARLLGL 133
Query: 384 VKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSK 443
D L+ + K P++ LA +
Sbjct: 134 ----FDALVS------------ADLYGLVGVGKPDPKIFELAL---------------EE 162
Query: 444 ISAGREVVAVTGDGTNDGPALKKAD 468
+ E V + GDG ND PA K A
Sbjct: 163 LGVKPEEVLMVGDGVNDIPAAKAAG 187
>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General
function prediction only].
Length = 264
Score = 43.6 bits (103), Expect = 2e-04
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 448 REVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
EV+A GD TND L+ A +G AMG + KE +D + T ++ + +A+
Sbjct: 206 EEVIAF-GDSTNDIEMLEVAGLGVAMG-NADEELKELADYVTTSNDEDGVAEAL 257
>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of
haloacid dehalogenase superfamily. This subfamily of
sequences falls within the Class-IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase superfamily of
aspartate-nucleophile hydrolases. The use of the name
"Cof" as an identifier here is arbitrary and refers to
the E. coli Cof protein. This subfamily is notable for
the large number of recent paralogs in many species.
Listeria, for instance, has 12, Clostridium, Lactococcus
and Streptococcus pneumoniae have 8 each, Enterococcus
and Salmonella have 7 each, and Bacillus subtilus,
Mycoplasma, Staphylococcus and E. coli have 6 each. This
high degree of gene duplication is limited to the gamma
proteobacteria and low-GC gram positive lineages. The
profusion of genes in this subfamily is not coupled with
a high degree of divergence, so it is impossible to
determine an accurate phylogeny at the equivalog level.
Considering the relationship of this subfamily to the
other known members of the HAD-IIB subfamily
(TIGR01484), sucrose and trehalose phosphatases and
phosphomannomutase, it seems a reasonable hypothesis
that these enzymes act on phosphorylated sugars.
Possibly the diversification of genes in this subfamily
represents the diverse sugars and polysaccharides that
various bacteria find in their biological niches. The
members of this subfamily are restricted almost
exclusively to bacteria (one sequences from S. pombe
scores above trusted, while another is between trusted
and noise). It is notable that no archaea are found in
this group, the closest relations to the archaea found
here being two Deinococcus sequences [Unknown function,
Enzymes of unknown specificity].
Length = 256
Score = 41.5 bits (98), Expect = 8e-04
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 431 DKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILT 490
K + ++ + + + E V GDG ND L+ A G AMG + K +D + T
Sbjct: 188 SKGSALQSLAE-ALGISLEDVIAFGDGMNDIEMLEAAGYGVAMG-NADEELKALADYV-T 244
Query: 491 DDN 493
D N
Sbjct: 245 DSN 247
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 39.3 bits (92), Expect = 0.001
Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 18/134 (13%)
Query: 342 EDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRR 401
E + P V EA+K+ + GI + + T + + + G+ D +I
Sbjct: 22 ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDY-FDPVI--------- 71
Query: 402 VRDNNGEVQQNLLDKVWPRLRVLARSSPS-DKYTLVKGMIDSKISAGREVVAVTGDGTND 460
+NG + ++ P+ DK ++ EV+ V GD ND
Sbjct: 72 --TSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPE---EVLMV-GDSLND 125
Query: 461 GPALKKA-DVGFAM 473
K A +G A+
Sbjct: 126 IEMAKAAGGLGVAV 139
>gnl|CDD|233437 TIGR01491, HAD-SF-IB-PSPlk, HAD-superfamily, subfamily-IB
PSPase-like hydrolase, archaeal. This hypothetical
equivalog is a member of the IB subfamily (TIGR01488) of
the haloacid dehalogenase (HAD) superfamily of
aspartate-nucleophile hydrolases. The sequences modelled
by This model are all from archaeal species. The
phylogenetically closest group of sequences to these are
phosphoserine phosphatases (TIGR00338). There are no
known archaeal phosphoserine phosphatases, and no
archaea fall within TIGR00338. It is likely, then, that
This model represents the archaeal branch of the PSPase
equivalog.
Length = 201
Score = 39.5 bits (92), Expect = 0.002
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 342 EDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRR 401
E +R E ++ + G+ +V+G + A+ +A K DY+ N
Sbjct: 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNP-----DYVYS-----NEL 127
Query: 402 VRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDG 461
V D G +Q +RV + +K V+ + +++ GD ND
Sbjct: 128 VFDEKGFIQP------DGIVRV----TFDNKGEAVERL-KRELNPSLTETVAVGDSKNDL 176
Query: 462 PALKKADVGFAMGITG 477
P + AD+ ++G G
Sbjct: 177 PMFEVADISISLGDEG 192
>gnl|CDD|219777 pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This
family contains haloacid dehalogenase-like hydrolase
enzymes.
Length = 254
Score = 38.4 bits (90), Expect = 0.007
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKA 500
EV+A GDG ND L+ A +G AMG + K A+D + +N + KA
Sbjct: 204 EVIAF-GDGENDIEMLELAGLGVAMG-NASPEVKAAADYVTGSNNEDGVAKA 253
>gnl|CDD|233435 TIGR01488, HAD-SF-IB, Haloacid Dehalogenase superfamily, subfamily
IB, phosphoserine phosphatase-like. This model
represents a subfamily of the Haloacid Dehalogenase
superfamily of aspartate-nucleophile hydrolases.
Subfamily IA, B, C and D are distinguished from the rest
of the superfamily by the presence of a variable domain
between the first and second conserved catalytic motifs.
In subfamilies IA and IB, this domain consists of an
alpha-helical bundle. It was necessary to model these
two subfamilies separately, breaking them at a an
apparent phylogenetic bifurcation, so that the resulting
model(s) are not so broadly defined that members of
subfamily III (which lack the variable domain) are
included. Subfamily IA includes the enzyme phosphoserine
phosphatase (TIGR00338) as well as three hypothetical
equivalogs. Many members of these hypothetical
equivalogs have been annotated as PSPase-like or
PSPase-family proteins. In particular, the hypothetical
equivalog which appears to be most closely related to
PSPase contains only Archaea (while TIGR00338 contains
only eukaryotes and bacteria) of which some are
annotated as PSPases. Although this is a reasonable
conjecture, none of these sequences has sufficient
evidence for this assignment. If such should be found,
this model should be retired while the PSPase model
should be broadened to include these sequences [Unknown
function, Enzymes of unknown specificity].
Length = 177
Score = 35.8 bits (83), Expect = 0.027
Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 25/127 (19%)
Query: 344 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 400
+RP E I + GI +V+G +A K GI D + LE +
Sbjct: 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGI-----DDVFANRLEFDDNGL 127
Query: 401 RVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTND 460
G+V K L+ L S +++AV GD ND
Sbjct: 128 LTGPIEGQVNPEGECKG-KVLKELLEESKITLK---------------KIIAV-GDSVND 170
Query: 461 GPALKKA 467
P LK A
Sbjct: 171 LPMLKLA 177
>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
metabolism].
Length = 212
Score = 36.1 bits (84), Expect = 0.033
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 33/136 (24%)
Query: 343 DPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRV 402
+ P E + + AG + +++G IA + GI DY+ +
Sbjct: 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGI-----DYV------VANEL 124
Query: 403 RDNNGEVQQNLLDKVWP------RLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGD 456
++G++ ++ + LR LA E VA GD
Sbjct: 125 EIDDGKLTGRVVGPICDGEGKAKALRELAAELGIPL---------------EETVAY-GD 168
Query: 457 GTNDGPALKKADVGFA 472
ND P L+ A + A
Sbjct: 169 SANDLPMLEAAGLPIA 184
>gnl|CDD|232927 TIGR00338, serB, phosphoserine phosphatase SerB. Phosphoserine
phosphatase catalyzes the reaction 3-phospho-serine +
H2O = L-serine + phosphate. It catalyzes the last of
three steps in the biosynthesis of serine from
D-3-phosphoglycerate. Note that this enzyme acts on free
phosphoserine, not on phosphoserine residues of
phosphoproteins [Amino acid biosynthesis, Serine
family].
Length = 219
Score = 35.4 bits (82), Expect = 0.064
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 25/157 (15%)
Query: 344 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVR 403
P+ E +K + G + +++G A + K G+ + L +E +
Sbjct: 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLT---- 140
Query: 404 DNNGEVQQNLLDKVWPRLRVLARSSPSDKY-TLVKGMIDSKISAGREVVAVTGDGTNDGP 462
G V+ ++D S K TL+ + IS VAV GDG ND
Sbjct: 141 ---GLVEGPIVDA-------------SYKGKTLLILLRKEGISP-ENTVAV-GDGANDLS 182
Query: 463 ALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVK 499
+K A +G A ++ +DI + + + I+
Sbjct: 183 MIKAAGLGIAFN--AKPKLQQKADICINKKDLTDILP 217
>gnl|CDD|221706 pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family.
Length = 263
Score = 34.2 bits (79), Expect = 0.18
Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 510 SISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEM--PT 567
F + V + AF A + L + LI L S A+A E T
Sbjct: 35 PSLGDDLFSGLKSAVELDSAFEYVSAG----SGIIAFL-IPLIAAVLGSDAIAGEKERGT 89
Query: 568 PDLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFGILFFGDKLLDIPTGRGAEYGSLP 627
LLL +P R++ L+ K +IG L++ IL LL + A SL
Sbjct: 90 LKLLLSRPVSRSEILLGK-----LIGLLAVGLILAIAILVGV--LLAL-AVTAALGDSLS 141
Query: 628 TQHF--TIIFNTFVLMTLF 644
++ + +L+ L
Sbjct: 142 LGDLLLLVLASVLLLLALL 160
>gnl|CDD|213629 TIGR01489, DKMTPPase-SF, 2,3-diketo-5-methylthio-1-phosphopentane
phosphatase. This phosphatase is a member of the IB
subfamily (TIGR01488) of the haloacid dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases. With
the exception of OMNI|NTL01BS01361 from B. subtilis and
GP|15024582 from Clostridium acetabutylicum, the members
of this group are all eukaryotic, spanning metazoa,
plants and fungi. The B. subtilus gene (YkrX, renamed
MtnX) is part of an operon for the conversion of
methylthioribose (MTR) to methionine. It works with the
enolase MtnW, a RuBisCO homolog. The combination of MtnW
and MtnX achieves the same overall reaction as the
enolase-phosphatase MtnC. The function of MtnX was shown
by Ashida, et al. (2003) to be
2,3-diketo-5-methylthio-1-phosphopentane phosphatase,
rather than 2,3-diketo-5-methylthio-1-phosphopentane
phosphatase as proposed earlier. See the Genome Property
for methionine salvage for more details. In eukaryotes,
methionine salvage from methylthioadenosine also occurs.
It seems reasonable that members of this family in
eukaryotes fulfill a similar role as in Bacillus. A more
specific, equivalog-level model is TIGR03333. Note that
a member of this family from S. cerevisiae is annotated
as a "probable membrane protein" due to a predicted
transmembrane helix. The region in question contains the
second of the three conserved HAD superfamily catalytic
motifs and thus, considering the fold of the HAD
catalytic domain, is unlikely to be a transmembrane
region in fact [Central intermediary metabolism, Other].
Length = 188
Score = 33.6 bits (77), Expect = 0.20
Identities = 31/136 (22%), Positives = 45/136 (33%), Gaps = 28/136 (20%)
Query: 344 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEG---KE 397
P+ P E I + GI +++ G D+ I LEG K+
Sbjct: 72 PIDPGFKEFIAFIKEHGIDFIVISD------------------GNDFFIDPVLEGIGEKD 113
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISA-GREVVAVTGD 456
+ N + VWP S KG + K+S + + GD
Sbjct: 114 VFIEIYSNPASFDNDGRHIVWPHH---CHGCCSCPCGCCKGKVIHKLSEPKYQHIIYIGD 170
Query: 457 GTNDGPALKKADVGFA 472
G D K +DV FA
Sbjct: 171 GVTDVCPAKLSDVVFA 186
>gnl|CDD|234910 PRK01158, PRK01158, phosphoglycolate phosphatase; Provisional.
Length = 230
Score = 33.8 bits (78), Expect = 0.22
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 52/203 (25%)
Query: 351 EAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKP--GEDY-LILEGKEFNRRVRDNNG 407
EAI+K ++ GI + + TG+ + AR+ A G P E+ +I G + R +
Sbjct: 27 EAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKRIFLGDIE 86
Query: 408 EVQQ--NLLDKVWPRLR---------------VLARSSPSDKY-TLVKG------MIDSK 443
E ++ + L K +P L R+ P ++ L++ ++DS
Sbjct: 87 ECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSG 146
Query: 444 ---------ISAG--------------REVVAVTGDGTNDGPALKKADVGFAMGITGTDV 480
++ G EV A+ GD ND + A G A+ +
Sbjct: 147 FAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAI-GDSENDLEMFEVAGFGVAVA-NADEE 204
Query: 481 AKEASDIILTDDNFSSIVKAVMW 503
KEA+D + + +A+
Sbjct: 205 LKEAADYVTEKSYGEGVAEAIEH 227
>gnl|CDD|213628 TIGR01487, Pglycolate_arch, phosphoglycolate phosphatase,
TA0175-type. This group of Archaeal sequences, now
known to be phosphoglycolate phosphatases, is most
closely related to the sucrose-phosphate phosphatases
from plants and cyanobacteria (TIGR01485). Together,
these two models comprise a subfamily model (TIGR01482).
TIGR01482, in turn, is a member of the IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases.
Length = 215
Score = 32.0 bits (73), Expect = 0.62
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
E VA GD ND + A+ D KE +D + ++ +V+ +
Sbjct: 164 EEVAAIGDSENDIDLFRVVGFKVAVA-NADDQLKEIADYVTSNPYGEGVVEVL 215
>gnl|CDD|226572 COG4087, COG4087, Soluble P-type ATPase [General function
prediction only].
Length = 152
Score = 31.4 bits (71), Expect = 0.67
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 404 DNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPA 463
D G + Q P RV A + P K +++ ++ E V + G+G ND A
Sbjct: 54 DRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIR-----ELKKRYEKVVMVGNGANDILA 108
Query: 464 LKKADVGFAMGITGTDV---AKEASDIILTD 491
L++AD+G I V +D++L +
Sbjct: 109 LREADLGI-CTIQQEGVPERLLLTADVVLKE 138
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 454
Score = 32.1 bits (73), Expect = 0.90
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 240 IPKKNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLR-TI 298
IPK+ G S+I K +Y YG+ K++ +N+++ + CD L
Sbjct: 351 IPKEGGIEEIKPYFSKI---KKAYFYGQ-------AKEIFANTAKNIVDFVICDNLEQAF 400
Query: 299 SIAYKDFVTDKAEINQV 315
+AYKD V D AE+ +
Sbjct: 401 DLAYKDAVGDNAEVKNI 417
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional.
Length = 410
Score = 31.4 bits (72), Expect = 1.4
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 510 SISKFLQFQLTVNVVAVIVAFIGACAVQ--DSPLKAVQMLWVNLIMDTLA 557
S S LQ + + +VA++VA A ++ D P A + + + L
Sbjct: 135 SSSANLQTVIALLIVALVVAIWWAGDIKPADIPFPAPGSIEWSGLFAALG 184
>gnl|CDD|182523 PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase;
Provisional.
Length = 272
Score = 30.8 bits (70), Expect = 2.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 448 REVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVM 502
+ VVA GD ND L+ A +G AMG D K +D+++ D+ SI + +
Sbjct: 216 KNVVAF-GDNFNDISMLEAAGLGVAMG-NADDAVKARADLVIGDNTTPSIAEFIY 268
>gnl|CDD|179334 PRK01770, PRK01770, sec-independent translocase; Provisional.
Length = 171
Score = 29.0 bits (65), Expect = 4.7
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 12/47 (25%)
Query: 62 IYFREFVRFFIVGVTVLVVAVPEGLPLAV--------TL-SLAYSVK 99
I F E + F++G LVV P+ LP+AV L SLA +V+
Sbjct: 4 IGFSELLLVFVIG---LVVLGPQRLPVAVKTVAGWIRALRSLATTVQ 47
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 29.9 bits (68), Expect = 4.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 56 DEEWKAIY-FREFVRFFIVGVTVLVVAVPEGLPLAV 90
D WK Y F R I G+TV ++A+P + LA+
Sbjct: 17 DACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAI 52
>gnl|CDD|218033 pfam04339, DUF482, Protein of unknown function, DUF482. This
family contains several proteins of uncharacterized
function.
Length = 370
Score = 29.8 bits (68), Expect = 4.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 354 KKCQRAGITIRMVTGDNINTA 374
+K GITIR +TGD I
Sbjct: 193 RKVAEQGITIRWLTGDEITPE 213
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 30.1 bits (69), Expect = 5.4
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 348 EVPEAIKKCQRAGIT--------IRMVTGDNINTARSIATKCGI-VKPGEDYLI 392
E PE + C AGIT +R+ GD + AR+ A K G+ V PG + I
Sbjct: 91 ENPEFARACAEAGITFIGPTAEVLRL-LGDKV-AARNAAIKAGVPVIPGSEGPI 142
>gnl|CDD|221729 pfam12710, HAD, haloacid dehalogenase-like hydrolase.
Length = 122
Score = 28.3 bits (63), Expect = 6.1
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 123 ICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAP 182
D GTLT + + + + + A +++E + + SG ++ P
Sbjct: 1 AVFDLDGTLTDSDTALLLLLEALAEDRRLGLL---GLSDAEELLELVVIVSGSPEPLVRP 57
>gnl|CDD|129295 TIGR00191, thrB, homoserine kinase. Homoserine kinase is part of
the threonine biosynthetic pathway.Homoserine kinase is
a member of the GHMP kinases (Galactokinase, Homoserine
kinase, Mevalonate kinase, Phosphomevalonate kinase) and
shares with them an amino-terminal domain probably
related to ATP binding.P.aeruginosa homoserine kinase
seems not to be homologous (see PROSITE:PDOC0054) [Amino
acid biosynthesis, Aspartate family].
Length = 302
Score = 29.3 bits (66), Expect = 6.7
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 577 GRTKALISKTMMKNIIGQAIYQLVIIFGILFFGDKLL---DIPTGRG 620
G I N+I Q + + GI K+ +IP GRG
Sbjct: 48 GEGVEKIPTEPTDNLIYQVAKRFLDQLGIRMPPVKVTLEKNIPLGRG 94
>gnl|CDD|227632 COG5322, COG5322, Predicted dehydrogenase [General function
prediction only].
Length = 351
Score = 29.1 bits (65), Expect = 7.3
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 22/101 (21%)
Query: 135 RMTAVQAYVCEVQYKNIP----KYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPK 190
R+ + Q V E P P+ +++ + A +L
Sbjct: 62 RIRSAQGKVIEGYLVESPLLPEMLRSRPKAATRRVLNAM-------------ALAQKLGA 108
Query: 191 QVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNS 231
V L GF +G Q V+ E FTR T NS
Sbjct: 109 DV-----TGLGGFSSIVGNLGQNVQVRNVELTFTRFTTGNS 144
>gnl|CDD|176553 cd08612, GDPD_GDE4, Glycerophosphodiester phosphodiesterase domain
of mammalian glycerophosphodiester phosphodiesterase
GDE4 and similar proteins. This subfamily corresponds
to the glycerophosphodiester phosphodiesterase domain
(GDPD) present in mammalian GDE4 (also known as
glycerophosphodiester phosphodiesterase
domain-containing protein 1 (GDPD1)) and similar
proteins. Mammalian GDE4 is a transmembrane protein
whose cellular function has not yet been elucidated. It
is expressed widely, including in placenta, liver,
kidney, pancreas, spleen, thymus, ovary, small intestine
and peripheral blood leukocytes. It is also expressed in
the growth cones in neuroblastoma Neuro2a cells, which
suggests GDE4 may play some distinct role from other
members of the GDE family.
Length = 300
Score = 29.1 bits (66), Expect = 8.1
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 111 LDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYED 156
LD T + D+ R V V ++ Y ++P Y +
Sbjct: 60 LDVHLTKDGQVVVSHDEN----LLRSCGVDKLVSDLNYADLPPYLE 101
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 29.1 bits (66), Expect = 8.2
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 20/75 (26%)
Query: 329 IVSHLTC--LCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKP 386
I++HL +IGIED PEAI + A + G + R I TK P
Sbjct: 194 ILAHLLQPKEVLIGIED----NKPEAIAALRAA------LAGADDIRVRVIPTK----YP 239
Query: 387 --GEDYLI--LEGKE 397
GE LI L GKE
Sbjct: 240 SGGEKQLIQILTGKE 254
>gnl|CDD|239432 cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the
enolase superfamily. Enzymes of this subgroup share
three conserved carboxylate ligands for the essential
divalent metal ion (usually Mg2+), two aspartates and a
glutamate, and conserved catalytic residues, a
Lys-X-Lys motif and a conserved histidine-aspartate
dyad. Members of the MR subgroup are mandelate racemase,
D-glucarate/L-idarate dehydratase (GlucD),
D-altronate/D-mannonate dehydratase , D-galactonate
dehydratase (GalD) , D-gluconate dehydratase (GlcD), and
L-rhamnonate dehydratase (RhamD).
Length = 357
Score = 29.1 bits (66), Expect = 8.7
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
E+PV P+ E + + R ++ + G+N+ T
Sbjct: 220 FEEPVPPDDLEGLARL-RQATSVPIAAGENLYT 251
>gnl|CDD|234684 PRK00192, PRK00192, mannosyl-3-phosphoglycerate phosphatase;
Reviewed.
Length = 273
Score = 28.8 bits (65), Expect = 9.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 422 RVLARSSPSDKYTLVKGMID-SKISAGREVVAVTGDGTNDGPALKKADVGF 471
R L DK V+ + + + G E +A+ GD ND P L+ AD+
Sbjct: 181 RFLHLLGGGDKGKAVRWLKELYRRQDGVETIAL-GDSPNDLPMLEAADIAV 230
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.393
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,017,202
Number of extensions: 3420942
Number of successful extensions: 3468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3381
Number of HSP's successfully gapped: 102
Length of query: 668
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 565
Effective length of database: 6,369,140
Effective search space: 3598564100
Effective search space used: 3598564100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)