RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11770
(668 letters)
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 468 bits (1207), Expect = e-153
Identities = 190/719 (26%), Positives = 313/719 (43%), Gaps = 97/719 (13%)
Query: 11 DEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRF 70
++ K+ LQ KL + Q+ S I + +I I D + R + +
Sbjct: 244 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINI-------GHFNDPVHGGSWIRGAIYY 296
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
F + V + V A+PEGLP +T LA ++M K N +VR L + ET+G + ICSDKTGT
Sbjct: 297 FKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGT 356
Query: 131 LTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANEL-- 188
LTTN+M+ + ++ + + + ++ EG + + + + EL
Sbjct: 357 LTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELAT 416
Query: 189 ------------------PKQVGNKTECALLGFVVAIGKNYQTVRDDLP----------- 219
++VG TE AL V + VR+
Sbjct: 417 ICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 476
Query: 220 EEVFTRVYT--FNSVRKSMSTVI------PKKNGYRVYTKGASEIILKKCSYIYGRNGHL 271
++ + +T F+ RKSMS G +++ KGA E ++ +C+Y+
Sbjct: 477 RQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVR-VGTTR 535
Query: 272 EKFTKDMQGR-LVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIV 330
T ++ + L D LR +++A +D + E+ +
Sbjct: 536 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVL------DDSSRFMEYE 589
Query: 331 SHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDY 390
+ LT + V+G+ DP R EV +I+ C+ AGI + M+TGDN TA +I + GI E+
Sbjct: 590 TDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEV 649
Query: 391 --LILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGR 448
G+EF D+ + + R AR PS K +V+ + +
Sbjct: 650 ADRAYTGREF-----DDLPLAE---QREACRRACCFARVEPSHKSKIVEYL-----QSYD 696
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVY 508
E+ A+TGDG ND PALKKA++G AMG +GT VAK AS+++L DDNFS+IV AV GR +Y
Sbjct: 697 EITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 755
Query: 509 DSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTP 568
+++ +F+++ ++ NV V+ F+ A L VQ+LWVNL+ D L + AL P
Sbjct: 756 NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDL 815
Query: 569 DLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFGILFFGDKLLDIPTGRGAEYGSLPT 628
D++ R P + LIS + + Y G + + G G Y L
Sbjct: 816 DIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWW--FMYAEDGPGVTYHQLTH 873
Query: 629 QHF----------------------TIIFNTFVLMTLFNEINARKIHGQRNVFE-GLFT 664
T+ + V + + N +N+ + +++ +
Sbjct: 874 FMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSEN--QSLMRMPPWV 930
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 463 bits (1193), Expect = e-151
Identities = 166/712 (23%), Positives = 290/712 (40%), Gaps = 102/712 (14%)
Query: 11 DEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRF 70
+ +K+ + ++ I ++ + F+R
Sbjct: 288 ENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAM-----------------CIGYTFLRA 330
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
+ + ++V VPEGL VT+ L+ + K++ N +V++L+A ET+G+ + ICSDKTGT
Sbjct: 331 MVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGT 390
Query: 131 LTTNRMTAVQAYVCEVQYKNIPKYE------DIPEDIASKIVEGISVNSGYTSKIMAPEN 184
LT NRMT + + + D + + +++ + + + ++
Sbjct: 391 LTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCN--RAAFKSGQD 448
Query: 185 ANELPKQ--VGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYT--FNSVRKSMSTVI 240
A +PK+ +G+ +E ALL F N R+ P +V FNS K ++
Sbjct: 449 AVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFP-----KVCEIPFNSTNKFQLSIH 503
Query: 241 ----PKKNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLR 296
P+ + + KGA E +L++CS I G + + + + G R
Sbjct: 504 TLEDPRDPRHVLVMKGAPERVLERCSSIL-IKGQELPLDEQWREA-FQTAYLSLGGLGER 561
Query: 297 TISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKC 356
+ + + + S L+ ++ + DP R VP+A+ KC
Sbjct: 562 VLGFCQLYLSEKDYPPGY-----AFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKC 616
Query: 357 QRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNL--- 413
+ AGI + MVTGD+ TA++IA GI+ G + + V N + +
Sbjct: 617 RTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVIN 676
Query: 414 -----------LDKVWPRLR--VLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTND 460
L + V AR+SP K +V+ +VAVTGDG ND
Sbjct: 677 GMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESC-----QRLGAIVAVTGDGVND 731
Query: 461 GPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLT 520
PALKKAD+G AMGI G+D AK A+D+IL DDNF+SIV V GR ++D++ K + + LT
Sbjct: 732 SPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLT 791
Query: 521 VN---VVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYG 577
N + ++ + + PL + +L++ L D S++LA E D++ +P
Sbjct: 792 KNIPELTPYLIYITVSVPL---PLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRN 848
Query: 578 RTKALISKTMM--KNIIGQAIYQLVIIFGILFFG----------------------DKLL 613
+ + + + Q F F + L
Sbjct: 849 PKRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWENHHLQDL 908
Query: 614 DIPTGRGAEYGSLPTQH---FTIIFNTFVLMTLFNEINARKIHG---QRNVF 659
G+ +G Q +T+ F + + + + + + Q+ F
Sbjct: 909 QDSYGQEWTFGQRLYQQYTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFF 960
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 461 bits (1188), Expect = e-150
Identities = 177/712 (24%), Positives = 301/712 (42%), Gaps = 97/712 (13%)
Query: 11 DEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRF 70
+ ++ + ++ I + + ++ + I ++
Sbjct: 283 EVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSL-----------------ILGYSWLEA 325
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
I + ++V VPEGL VT+ L + K+M + N LV++L+A ET+G+ + ICSDKTGT
Sbjct: 326 VIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGT 385
Query: 131 LTTNRMTAVQAYVCEVQY-----KNIPKYEDIPEDIASKIVEGISV--NSGYTSKIMAPE 183
LT NRMT + + +N + I+ N + A +
Sbjct: 386 LTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNR---AVFQAGQ 442
Query: 184 NANELPKQ--VGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYT--FNSVRKSMSTV 239
+ + K+ G+ +E ALL + + Q +RD P ++ FNS K ++
Sbjct: 443 DNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNP-----KIVEIPFNSTNKYQLSI 497
Query: 240 IPKKNG----YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGL 295
+ Y + KGA E IL +CS I NG E +DM+ +N + G
Sbjct: 498 HENEKSSESRYLLVMKGAPERILDRCSTIL-LNGAEEPLKEDMKEA-FQNAYLELGGLGE 555
Query: 296 RTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKK 355
R + + DK +PN + L + ++ + DP R VP+A+ K
Sbjct: 556 RVLGFCHFALPEDKYNEGYPFDADEPN-----FPTTDLCFVGLMAMIDPPRAAVPDAVGK 610
Query: 356 CQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQ---- 411
C+ AGI + MVTGD+ TA++IA GI+ G + + N + N +
Sbjct: 611 CRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVV 670
Query: 412 ------NLLDKVWPRL------RVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTN 459
+L +V + V AR+SP K +V+G +VAVTGDG N
Sbjct: 671 HGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGC-----QRQGAIVAVTGDGVN 725
Query: 460 DGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQL 519
D PALKKAD+G AMGI+G+DV+K+A+D+IL DDNF+SIV V GR ++D++ K + + L
Sbjct: 726 DSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTL 785
Query: 520 TVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRT 579
T N+ + + PL V +L ++L D + +++LA E D++ R+P
Sbjct: 786 TSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPK 845
Query: 580 KALISKTMMKNIIGQAIYQLVIIFGILFF------------------------GDKLLDI 615
+ + ++ I + + G + ++
Sbjct: 846 TDKLVNERLISMAYGQIGMIQALGGFFSYFVILAENGFLPMDLIGKRVRWDDRWISDVED 905
Query: 616 PTGRGAEYGSLPTQH---FTIIFNTFVLMTLFNEINARKIHGQRNVFEGLFT 664
G+ Y T F + V++ + I + ++F+
Sbjct: 906 SFGQQWTYEQRKIVEFTCHTSFFISIVVVQWADLIICKTRR--NSIFQQGMK 955
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 355 bits (914), Expect = e-111
Identities = 120/641 (18%), Positives = 243/641 (37%), Gaps = 100/641 (15%)
Query: 12 EKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFF 71
+ Q LT IG + +VI I V+ I R++
Sbjct: 231 NQVGHFQKVLT----AIGNFCICSIAIGMVIEI-------IVMY-----PIQRRKYRDGI 274
Query: 72 IVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTL 131
+ +L+ +P +P +++++A ++ + + + + A E M +CSDKTGTL
Sbjct: 275 DNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTL 334
Query: 132 TTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPKQ 191
T N+++ V + EV K + + + + A + +
Sbjct: 335 TLNKLS-VDKNLVEVFCKGVE-----KDQVL----------------LFAAMASRV---E 369
Query: 192 VGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIPKKNG-YRVYT 250
+ + A++G + + R + E F FN V K + +G + +
Sbjct: 370 NQDAIDAAMVGM----LADPKEARAGIREVHFL---PFNPVDKRTALTYIDGSGNWHRVS 422
Query: 251 KGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKA 310
KGA E IL+ K + D+ + V ++I+ A GLR++++A +
Sbjct: 423 KGAPEQILELA-----------KASNDLSKK-VLSIIDKYAERGLRSLAVARQVVPEKTK 470
Query: 311 EINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDN 370
E + + ++ + DP R + E I++ G+ ++M+TGD
Sbjct: 471 E------------SPGAP----WEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQ 514
Query: 371 INTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPS 430
+ + + G+ L G + + ++++ + A P
Sbjct: 515 LAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIP-------VEELIEKADGFAGVFPE 567
Query: 431 DKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILT 490
KY +VK + + K +V +TGDG ND PALKKAD+G A+ TD A+ ASDI+LT
Sbjct: 568 HKYEIVKKLQERK-----HIVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLT 621
Query: 491 DDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVN 550
+ S I+ AV+ R ++ + + + +++ + ++ F+ + + A +L +
Sbjct: 622 EPGLSVIISAVLTSRAIFQRMKNYTIYAVSIT-IRIVFGFMLIALIWEFDFSAFMVLIIA 680
Query: 551 LIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFGILFFGD 610
++ D + ++ + P K + + YQ ++ +
Sbjct: 681 ILND-GTIMTISKDRVKPSPTPDSW-------KLKEIFATGVVLGGYQAIMTVIFFWAAH 732
Query: 611 KLLDIPTGRGAEYGSLPTQH-FTIIFNTFVLMTLFNEINAR 650
K G ++ +++ R
Sbjct: 733 KTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTR 773
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 340 bits (874), Expect = e-105
Identities = 113/645 (17%), Positives = 226/645 (35%), Gaps = 116/645 (17%)
Query: 11 DEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRF 70
L + + + +++ +S + V+
Sbjct: 280 SGGSGHFTEVLNGIGTILLIL---VIFTLLIVWVSSFYRS--------------NPIVQI 322
Query: 71 FIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 130
+ + ++ VP GLP VT ++A + K +V+ L A E++ +CSDKTGT
Sbjct: 323 LEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGT 382
Query: 131 LTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPK 190
LT N+++ Y PED+ A K
Sbjct: 383 LTKNKLSLHDPYTVA---------GVDPEDLM---------------LTAC--LAASRKK 416
Query: 191 QVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYT--FNSVRKSMSTVIPKKNG-YR 247
+ + + A L + K Y + L + + + F+ V K + V+ G
Sbjct: 417 KGIDAIDKAFLKSL----KYYPRAKSVLSK--YKVLQFHPFDPVSKKVVAVVESPQGERI 470
Query: 248 VYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVT 307
KGA +LK +++ +N + A G R++ +A K
Sbjct: 471 TCVKGAPLFVLKTVEED-------HPIPEEVDQA-YKNKVAEFATRGFRSLGVARKR--- 519
Query: 308 DKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVT 367
E + L ++ DP R + + + + + G++I+M+T
Sbjct: 520 -----------------GEGS----WEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLT 558
Query: 368 GDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARS 427
GD + AR + + G+ + L D G + ++ A
Sbjct: 559 GDAVGIARETSRQLGLGTNIYNAERLGLGGGG----DMPGSEVYDFVEAA----DGFAEV 610
Query: 428 SPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDI 487
P KY +V+ + +VA+TGDG ND P+LKKAD G A+ +D A+ A+DI
Sbjct: 611 FPQHKYNVVEILQQRG-----YLVAMTGDGVNDAPSLKKADTGIAVE-GSSDAARSAADI 664
Query: 488 ILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQML 547
+ +I+ A+ R ++ + ++ +++ +++ I + A+ + L ++
Sbjct: 665 VFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGL-WIAILNRSLNIELVV 723
Query: 548 WVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQ--LVIIFGI 605
++ + D +A+LA+A + K + + G ++ ++ +
Sbjct: 724 FIAIFAD-VATLAIAYDNAPYSQTPVKW-----------NLPKLWGMSVLLGVVLAVGTW 771
Query: 606 LFFGDKLLDIPTGRGAEYGSLPTQHFTIIFNTFVLMTLFNEINAR 650
+ G ++F L + R
Sbjct: 772 ITVT---TMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITR 813
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 121 bits (306), Expect = 4e-31
Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 43/164 (26%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
I D RP + + ++K + G+ I +++GD + + ++ + I
Sbjct: 130 SFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI-------------- 175
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
+ SP DK +++ K+ V + GDG
Sbjct: 176 -----------------Q------EYYSNLSPEDKVRIIE-----KLKQNGNKVLMIGDG 207
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
ND AL ADV AMG G D++K +DIIL ++ +++ +
Sbjct: 208 VNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLI 250
Score = 33.2 bits (77), Expect = 0.20
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 107 LVRHLDACETMGNATAICSDKTGTLTTNRMT 137
++++ + E + I +KTGTLT
Sbjct: 15 IIKNSNVYEKIKEIDTIIFEKTGTLTYGTPI 45
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 120 bits (304), Expect = 1e-30
Identities = 54/174 (31%), Positives = 73/174 (41%), Gaps = 44/174 (25%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
VI + D +RPE EAI K + GI M+TGDN A+ +A + G+
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL-------------- 183
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
D A P +K VK ++ V A+ GDG
Sbjct: 184 -----------------D------DYFAEVLPHEKAEKVK-----EVQQKY-VTAMVGDG 214
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 511
ND PAL +ADVG A+G GTDVA E +DI+L ++ + V R Y
Sbjct: 215 VNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKF 267
Score = 30.9 bits (71), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 108 VRHLDACETMGNATAICSDKTGTLT 132
+R A E + A+ DKTGTLT
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLT 25
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 119 bits (302), Expect = 2e-30
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 44/164 (26%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
+I + D ++ A+++ +R GI + M+TGDN +A +I+ + +
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 202
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
D V+A P K VK K+ A VVA GDG
Sbjct: 203 -----------------D------LVIAEVLPHQKSEEVK-----KLQAKE-VVAFVGDG 233
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 234 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 276
Score = 32.8 bits (76), Expect = 0.28
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 107 LVRHLDACETMGNATAICSDKTGTLTTNRMT 137
L+++ DA E TA+ DKTGTLT +
Sbjct: 19 LIKNADALEVAEKVTAVIFDKTGTLTKGKPE 49
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 121 bits (305), Expect = 1e-28
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 43/164 (26%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
++ +EDP++ PE I + Q++GI I M+TGD+ TA ++A GI
Sbjct: 548 LLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK------------- 594
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
+V+A P DK +V ++ +VA+ GDG
Sbjct: 595 ------------------------KVVAEIMPEDKSRIVS-----ELKDKGLIVAMAGDG 625
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
ND PAL KAD+G AMG TGTDVA E++ + L + I KA
Sbjct: 626 VNDAPALAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKAR 668
Score = 38.3 bits (90), Expect = 0.009
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 67 FVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSD 126
I V+VL++A P L LA +S+ V K + L+++ +A E M + D
Sbjct: 367 LSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVD 426
Query: 127 KTGTLT 132
KTGTLT
Sbjct: 427 KTGTLT 432
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 120 bits (303), Expect = 1e-28
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 44/164 (26%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
+I + D ++ A+++ +R GI + M+TGDN +A +I+ + +
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 496
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
D V+A P K VK K+ A VVA GDG
Sbjct: 497 -----------------D------LVIAEVLPHQKSEEVK-----KLQAKE-VVAFVGDG 527
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 528 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 570
Score = 39.8 bits (94), Expect = 0.003
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 40 VVILISQYCVKKFVIEDEEWKAIYFREFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVK 99
V+L++ + F+ W I + F + VLVVA P LA +L +
Sbjct: 253 TVLLVA---ISAFIY----WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMG 305
Query: 100 KMMKDNNLVRHLDACETMGNATAICSDKTGTLT 132
K + L+++ DA E TA+ DKTGTLT
Sbjct: 306 KGAELGILIKNADALEVAEKVTAVIFDKTGTLT 338
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 119 bits (301), Expect = 3e-28
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 44/164 (26%)
Query: 338 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 397
+I + D ++ A+++ +R GI + M+TGDN +A +I+ + +
Sbjct: 529 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 574
Query: 398 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 457
D V+A P K VK K+ A VVA GDG
Sbjct: 575 -----------------D------LVIAEVLPHQKSEEVK-----KLQAKE-VVAFVGDG 605
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 606 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 648
Score = 40.6 bits (96), Expect = 0.002
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 40 VVILISQYCVKKFVIEDEEWKAIYFREFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVK 99
V+L++ + F+ W I + F + VLVVA P LA +L +
Sbjct: 331 TVLLVA---ISAFIY----WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMG 383
Query: 100 KMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMT 137
K + L+++ DA E TA+ DKTGTLT +
Sbjct: 384 KGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPE 421
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 86.1 bits (214), Expect = 9e-20
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 25/158 (15%)
Query: 192 VGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYT--FNSVRKSMSTVIPKKNG-YRV 248
+ N + A+L + ++ F+ R+ MS V+ + +++
Sbjct: 32 LKNLLDTAVLEGTDEESA-------RSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQL 84
Query: 249 YTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTD 308
KGA + IL CS + NG + M + ++ V + + GLR +++A K
Sbjct: 85 VCKGALQEILNVCSQVR-HNGEIVPLDDIMLRK-IKRVTDTLNRQGLRVVAVATKYLPAR 142
Query: 309 KAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVR 346
+ + + DES+ L I D
Sbjct: 143 EGDYQR---------ADESD----LILEGYIAFLDHHH 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 1e-12
Identities = 69/526 (13%), Positives = 145/526 (27%), Gaps = 154/526 (29%)
Query: 145 EVQYKNIPKYEDIPEDIASKIVEGISVN--SGYTSKIMAPENANELPKQVGNKTECALLG 202
E QY+ Y+DI V+ I++ E + + + L
Sbjct: 13 EHQYQ----YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAVSGTLRL 67
Query: 203 FVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIPKKNGYRVYTKGASEIILKKCS 262
F + K + V+ + EEV Y F + + + S +
Sbjct: 68 FWTLLSKQEEMVQKFV-EEVLRINYKF------------LMSPIKTEQRQPS---MMTRM 111
Query: 263 YIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPN 322
YI R+ RL N + A K V+ ++ +
Sbjct: 112 YIEQRD------------RL-YNDNQVFA-----------KYNVSRLQPYLKLR-QALLE 146
Query: 323 WDDESNIVSH------LTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRM------VTGDN 370
N++ T + A+ C + +M + N
Sbjct: 147 LRPAKNVLIDGVLGSGKTWV---------------ALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 371 INTARSIATK----CGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNL------------- 413
N+ ++ + P ++ N ++R + +Q L
Sbjct: 192 CNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCL 247
Query: 414 --LDKVW-PR-LRVLARSSPSDKYTLV----KGMIDSKISAGREVVAVTGDGTNDGPALK 465
L V + S L+ K + D +A +++ D +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPD 301
Query: 466 KADVGFA--MGITGTDVAKEASDI----ILTDDNFSSIVKAVM---------WGRNVYDS 510
+ + D+ +E + SI+ + W D
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAESIRDGLATWDNWKHVNCDK 354
Query: 511 ISKFLQFQLTVNVVAVIVAFIGACAV-QDS---PLKAVQMLWVNL-------IMDTLASL 559
++ ++ L V A +V S P + ++W ++ +++ L
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 560 ALATEMPT------PDLLLRKPYGRTKALISKTMMKNIIGQAIYQL 599
+L + P P + L + K + ++I+ Y +
Sbjct: 415 SLVEKQPKESTISIPSIYLEL---KVKLENEYALHRSIVDH--YNI 455
Score = 55.6 bits (133), Expect = 4e-08
Identities = 55/399 (13%), Positives = 110/399 (27%), Gaps = 146/399 (36%)
Query: 32 GSTIAILT----VVILISQYCVKKFVIEDEEWKAIYFREFVRFFIVGVTVLVVAVPE--- 84
I + T V +S ++ + E + + +P
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 85 -GLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYV 143
P +++ +A S++ + + +H++ C+ + + L +
Sbjct: 324 TTNPRRLSI-IAESIRDGLATWDNWKHVN-CDKLTTIIESSLNV---LEPAEY---RKM- 374
Query: 144 CEVQYK---------NIP-----------KYEDIPEDIASK-----IVEG------ISVN 172
+ +IP D + +K +VE IS+
Sbjct: 375 ----FDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 173 SGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSV 232
S Y + EN L + + + Y + + + +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDH---------------YN----------IPKTFDSDDL 464
Query: 233 RKSMSTVIPKKNGYRVYTKGASEIILKKCSYI-YGRNGHLEK---------FTK---D-- 277
P + Y Y S+I + HL+ F D
Sbjct: 465 IP------PYLDQY-FY------------SHIGH----HLKNIEHPERMTLFRMVFLDFR 501
Query: 278 -MQGRLVRNVIEPMACDG--LRTIS--IAYKDFVTDKAEINQVHIEGDPNWDD------- 325
++ ++ R+ G L T+ YK ++ D DP ++
Sbjct: 502 FLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDN----------DPKYERLVNAILD 550
Query: 326 -----ESNIV-SHLTCLCVIGIEDPVRPEVPEAIKKCQR 358
E N++ S T L I + EA K+ QR
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 41.4 bits (96), Expect = 0.001
Identities = 51/361 (14%), Positives = 106/361 (29%), Gaps = 126/361 (34%)
Query: 103 KDNNLVRHLD-ACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPK-------Y 154
++ + +C+ + LTT R V ++ +I
Sbjct: 254 QNAKAWNAFNLSCKIL-------------LTT-RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 155 EDIPEDIASKIVEGISVNSGYTSKIMAPENANELPKQV--GNKTECALLGFVVAIG---- 208
D + + K ++ P+ +LP++V N +++ + G
Sbjct: 300 PDEVKSLLLKYLD------------CRPQ---DLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 209 KNYQTVRDD------------LPEEVFTRVYT----FNSVRKSMSTVIPKKNGYRVYTKG 252
N++ V D L + +++ F S IP ++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-----SAHIPTILLSLIWFDV 399
Query: 253 AS---EIILKKC--------------SYIYGRNGHLE-KFTKDMQGRLVRNVIEPMACDG 294
+++ K I +LE K + + L R++++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVD------ 451
Query: 295 LRTISIAYKDFVTDKAEINQVHIEGDPNWDDE---SNIVSHLTCLCVIGIEDPVRPEVPE 351
Y + + + + P + D+ S+I HL IE P R +
Sbjct: 452 ------HYN--IPKTFDSDDLI----PPYLDQYFYSHIGHHLK-----NIEHPERMTLFR 494
Query: 352 AI--------KKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVR 403
+ +K IR N + SI +K + Y+ ++ R V
Sbjct: 495 MVFLDFRFLEQK-------IRH-DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 404 D 404
Sbjct: 547 A 547
Score = 35.6 bits (81), Expect = 0.057
Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 1 MKPVEVAEKHDEKKSV------LQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVI 54
+K +E E+ + V L+ K+ + +GS + L + Y K ++
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF---Y--KPYIC 535
Query: 55 EDEEWKAIYFREFVRFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLV 108
+++ + F L+ + L +A +M ++ +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICS-----KYTDLLRIA-----LMAEDEAI 579
Score = 32.5 bits (73), Expect = 0.59
Identities = 40/250 (16%), Positives = 81/250 (32%), Gaps = 79/250 (31%)
Query: 9 KHDEKKSVLQAKLT------------KLAI-----QIGYAGSTIAIL------TVVILIS 45
D+ +++++ L +L++ I ++++ + V+++
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI--LLSLIWFDVIKSDVMVVV 408
Query: 46 QYCVKKFVIEDEEWKAIYFREFVRFFIVGVTVLVVAVPEGLP-LAVTLSLAYSVKKMMKD 104
K ++E ++ K E I + + + E L ++ Y++ K
Sbjct: 409 NKLHKYSLVE-KQPK-----ES-TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 105 NN-------------LVRHLDACETMGNATA--------------ICSDKTGTLTTNRMT 137
++ + HL E T I D T + +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 138 AV-------QAYVCEVQYKNIPKYEDIPEDIASKI--VEGISVNSGYTSKI----MAPEN 184
+ Y+C N PKYE + I + +E + S YT + MA +
Sbjct: 522 NTLQQLKFYKPYIC----DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 185 A--NELPKQV 192
A E KQV
Sbjct: 578 AIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 2e-09
Identities = 93/617 (15%), Positives = 184/617 (29%), Gaps = 220/617 (35%)
Query: 3 PVEVAEKHDEKKSV--LQAK-LTKLA--IQIGYAGSTIAILTVVILISQYCVKKFVIEDE 57
P E DE + L K L ++ ++ G +L +
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC---------------- 87
Query: 58 EWKAIYFREFVRFFIVG--VTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRH-LDAC 114
EF ++ G + L + + ++K L+++ + A
Sbjct: 88 ------LTEFENCYLEGNDIHALAAKLLQEND-----------TTLVKTKELIKNYITAR 130
Query: 115 ETMGNATAICSD-------KTGTLTTNRMTAV---Q----AYVCEVQ--YKNIPKYEDIP 158
S+ G ++ A+ Q Y E++ Y+ Y +
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGN---AQLVAIFGGQGNTDDYFEELRDLYQ---TYHVLV 184
Query: 159 EDI---ASKIVEGISVNSGYTSKIMAP--------ENANELPKQ-------VGNKTECAL 200
D+ +++ + + + K+ EN + P + + C L
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI----SCPL 240
Query: 201 LGFVVAIGKNYQTVRDDLPEEVFTRV--YTFNSVRKSMSTVIPKKNGYRVYTKG--ASEI 256
+G V+ + +Y V ++ +T +R + +++G +
Sbjct: 241 IG-VIQLA-HY---------VVTAKLLGFTPGELRSYLKGAT-------GHSQGLVTAVA 282
Query: 257 ILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLR------TISIAYKDFVTDKA 310
I + S+ E F VR I + G+R S+ + D
Sbjct: 283 IAETDSW--------ESFFV-----SVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSL 328
Query: 311 EINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKC-------QRAGITI 363
E N EG P S + L + + + +V + + K ++ I++
Sbjct: 329 ENN----EGVP---------SPM--LSISNLT---QEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 364 RMVTGDNINTARSIATKCGIVK-PGEDYLILEGKEFN---RRVRDNNGEVQQNLLD---K 416
+N A+++ +V P + L G N R+ + +G Q + K
Sbjct: 371 -------VNGAKNL-----VVSGPPQS---LYG--LNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 417 VWPRLRVLARSSP--SDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMG 474
+ R L +SP S ++ + + D + + D +
Sbjct: 414 LKFSNRFLPVASPFHSH-L-----LVPA-------SDLINKDLVKNNVSFNAKD----IQ 456
Query: 475 I------TGTDVAKEASDII--LTDDNFSSIVKAVMWGRNVYDSISKFLQF--------- 517
I G+D+ + I + D V W + L F
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIR---LPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 518 QLTVNV-----VAVIVA 529
LT V VIVA
Sbjct: 514 VLTHRNKDGTGVRVIVA 530
Score = 40.4 bits (94), Expect = 0.002
Identities = 68/427 (15%), Positives = 120/427 (28%), Gaps = 148/427 (34%)
Query: 79 VVAVPEGLPLAVTLSLA-YSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMT 137
++++P PL + LA Y V + +G T +
Sbjct: 231 LLSIPISCPLIGVIQLAHYVV--------------TAKLLGFTPGELRSYLKGATGHSQG 276
Query: 138 AVQAYVCEVQYKNIPKYEDIPEDIASKIVE-----GISVNSGYTSKIMAPENANELPKQV 192
V A +E K + G+ Y + + P + +
Sbjct: 277 LVTAVAIAET----DSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED-SLEN 330
Query: 193 GNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTV-IPKKNGYR--VY 249
+L + + E+V V NS + V I NG + V
Sbjct: 331 NEGVPSPMLS-----------ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 250 TKGASEIILKKCSYIYGRNGHLEKF----TKDMQGRLVRNVIEPMACDGLRTISIAYKDF 305
+ G + +YG N L K D Q R+ P + R + + + F
Sbjct: 380 S-GPPQ-------SLYGLNLTLRKAKAPSGLD-QSRI------PFS---ERKLKFSNR-F 420
Query: 306 --VTDKAEINQV--HIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGI 361
V H SHL L P + + + + +
Sbjct: 421 LPVA-------SPFH--------------SHL--L------VPASDLINKDL---VKNNV 448
Query: 362 TIRMVTGDNINTARSIATKCGI-VKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKV--- 417
+ A I V Y +G + +R +G + + ++D +
Sbjct: 449 SFN-------------AKDIQIPV-----YDTFDGSD----LRVLSGSISERIVDCIIRL 486
Query: 418 ---WPRLRVLARSS------PSDKYTLVKGMIDSKISAG---REVVAVTGDGT-NDGPAL 464
W +++ P L G++ + G R +VA GT + P
Sbjct: 487 PVKWETT-TQFKATHILDFGPGGASGL--GVLTHRNKDGTGVRVIVA----GTLDINPD- 538
Query: 465 KKADVGF 471
D GF
Sbjct: 539 --DDYGF 543
Score = 39.3 bits (91), Expect = 0.005
Identities = 67/440 (15%), Positives = 124/440 (28%), Gaps = 133/440 (30%)
Query: 283 VRNVIEPMACDGLRTI-SIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGI 341
V +++EP + ++ +F E N +H + + L
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-----------ALAAKLL-----QE 111
Query: 342 EDPVRPEVPEAIKKCQRAGITIRMVTGDNI-NTARSI---ATKCGIVK---------PGE 388
D + E I + IT R++ + S A G + +
Sbjct: 112 NDTTLVKTKELI----KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 389 DYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGM-IDSKISAG 447
DY +E + + V L+ L L R++ + +G+ I +
Sbjct: 168 DYF----EELRDLYQTYHVLVGD-LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-- 220
Query: 448 REVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWG--- 504
T D L + + I +A ++ +V A + G
Sbjct: 221 ------NPSNTPDKDYLLSIPISCPL-IGVIQLA-----------HY--VVTAKLLGFTP 260
Query: 505 RNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLW------VNLIMDTLAS 558
+ + T + ++ A A A DS W V + L
Sbjct: 261 GELRSYLKG-----ATGHSQGLVTAV--AIAETDS--------WESFFVSVRKAITVLFF 305
Query: 559 LALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFGILFFGDKLLDIPTG 618
+ + P+ L I + ++N G L I + +++ D
Sbjct: 306 IGVRCYEAYPNTSLP-------PSILEDSLENNEGVPSPMLSIS-NLTQ--EQVQDYVNK 355
Query: 619 RGAEYGSLPT-QHFTI-IFNT---FVL----MTL--FNEINARKI------------HGQ 655
+ LP + I + N V+ +L N + RK +
Sbjct: 356 TNS---HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN-LTLRKAKAPSGLDQSRIPFSE 411
Query: 656 R-----NVFEGLFTT---HS 667
R N F L HS
Sbjct: 412 RKLKFSNRF--LPVASPFHS 429
Score = 37.7 bits (87), Expect = 0.015
Identities = 36/250 (14%), Positives = 67/250 (26%), Gaps = 101/250 (40%)
Query: 9 KHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFV 68
+ ++ +L T+ Q A+ + F E+ K+
Sbjct: 1720 RSEK--GLL--SATQFT-QP-------ALTLMEKAA-------F----EDLKS------- 1749
Query: 69 RFFIVGVTVLVVAVPEGLPL---------AVTLSLAYSVKKMMKDNNLVRHLDACETMGN 119
+ I A G L A +S+ V+ +V + G
Sbjct: 1750 KGLIPADAT--FA---GHSLGEYAALASLADVMSIESLVE-------VVFY------RGM 1791
Query: 120 ATAICSDKTGTLTTN-RMTAVQAYVCEVQYKNIPK--YEDIPEDIASKIVEGISVNSGYT 176
+ + +N M A+ P ++ +VE + +G
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAIN-----------PGRVAASFSQEALQYVVERVGKRTG-- 1838
Query: 177 SKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRK-- 234
++ N N +Q V A G L + T V F ++K
Sbjct: 1839 -WLVEIVNYNVENQQY-----------VAA-GDL-----RAL--DTVTNVLNFIKLQKID 1878
Query: 235 ------SMST 238
S+S
Sbjct: 1879 IIELQKSLSL 1888
Score = 33.9 bits (77), Expect = 0.21
Identities = 47/305 (15%), Positives = 91/305 (29%), Gaps = 106/305 (34%)
Query: 395 GKEFNRRVRDNNGEVQQNLLDKVWPR------------LRVLARSSPSDKYTLVKGMIDS 442
G + + Q VW R + + ++P + G
Sbjct: 1632 GMDL----YKTSKAAQ-----DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 443 KISAGRE-VVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
+I RE A+ + DG K + F ++ + ++ +
Sbjct: 1683 RI---RENYSAMIFETIVDGKL--KTEKIFK------EINEHSTSYTFRSEK-------- 1723
Query: 502 MWGRNVYDSISKFLQFQLTVN----VVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLA 557
L T + + A A +D LK+ ++ + T A
Sbjct: 1724 -----------GLLS--ATQFTQPALTLMEKA-----AFED--LKSKGLIPAD---ATFA 1760
Query: 558 --SL----ALATE---MPTPDL--LLRKPYGRTKALISKTMMKNIIGQAIYQLVII---- 602
SL ALA+ M L ++ R + + ++ +G++ Y ++ I
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVFY---RGMT-MQVAVPRDELGRSNYGMIAINPGR 1816
Query: 603 FGILFFGDKLLDIPTGRGAEYGSLPTQHFTII-FNT----FV----------LMTLFNEI 647
F + L + G G L I+ +N +V + + N I
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWL----VEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
Query: 648 NARKI 652
+KI
Sbjct: 1873 KLQKI 1877
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 47.8 bits (114), Expect = 4e-06
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 6/131 (4%)
Query: 345 VRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNRR 401
+ + E I IR + + ++ G D+ + LEG R
Sbjct: 60 LPSSLKEEITSFVLEDAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDR 119
Query: 402 VRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDG 461
+ N+ + + WP + + S++ K + ++S + + + GD D
Sbjct: 120 IYCNHASFDNDYIHIDWP---HSCKGTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDV 176
Query: 462 PALKKADVGFA 472
A K +D+ FA
Sbjct: 177 EAAKLSDLCFA 187
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 41.4 bits (98), Expect = 4e-04
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
E++ + GD ND P + TD K SD + +D +
Sbjct: 171 EILVI-GDSNNDMPMFQLPVRKACPA-NATDNIKAVSDFV-SDYS 212
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 40.1 bits (94), Expect = 0.001
Identities = 25/159 (15%), Positives = 52/159 (32%), Gaps = 33/159 (20%)
Query: 344 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 400
+ P + + + G +++G + + + + DY +E
Sbjct: 179 TLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQL-----DYAFSNTVE------ 227
Query: 401 RVRDN--NGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGT 458
+RDN + +++ ++K + + A ++A GDG
Sbjct: 228 -IRDNVLTDNITLPIMNA-------------ANKKQTLVDLAARLNIATENIIAC-GDGA 272
Query: 459 NDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 497
ND P L+ A G A V +E + F +
Sbjct: 273 NDLPMLEHAGTGIAWK--AKPVVREKIHHQINYHGFELL 309
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 39.5 bits (93), Expect = 0.002
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
+V+ V GD ND L FA+ TD AK + +L + V +
Sbjct: 242 QVLVV-GDAENDIAMLSNFKYSFAVA-NATDSAKSHAKCVLPVSHREGAVAYL 292
Score = 29.9 bits (68), Expect = 2.6
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGED--YLILEGKEFN-RRVR 403
E +AIK+ G + + TG + S + + K + N V
Sbjct: 48 SENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVY----INGTIVY 103
Query: 404 DNNGEV 409
D G
Sbjct: 104 DQIGYT 109
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 39.0 bits (92), Expect = 0.003
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
EV V GDG ND A K A+ + KE +D + T
Sbjct: 171 EVAHV-GDGENDLDAFKVVGYKVAVA-QAPKILKENADYV-TKKE 212
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 38.6 bits (91), Expect = 0.004
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
+V A GDG ND L G AMG + K +D + T
Sbjct: 201 DVYAF-GDGLNDIEMLSFVGTGVAMGN-AHEEVKRVADFV-TKPV 242
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 38.3 bits (90), Expect = 0.006
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
+V+ + GD ND +K A +G AMG D KEA+ + T N
Sbjct: 215 DVMTL-GDQGNDLTMIKYAGLGVAMG-NAIDEVKEAAQAV-TLTN 256
Score = 32.1 bits (74), Expect = 0.52
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN-RRVRDN 405
+A++ + GI + + TG + + I Y I FN +
Sbjct: 25 QATIDAVQAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDD-QYAIT----FNGSVAQTI 79
Query: 406 NGEV-QQNLLDK 416
+G+V + L
Sbjct: 80 SGKVLTNHSLTY 91
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 37.6 bits (88), Expect = 0.006
Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 33/159 (20%)
Query: 344 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 400
P+ E + + + +G + D L
Sbjct: 75 PLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHL-----DAAFSNTLI------ 123
Query: 401 RVRDN--NGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGT 458
V ++ NG V +++ K ++ + + + V GDG
Sbjct: 124 -VENDALNGLVTGHMMFS-------------HSKGEMLLVLQRLLNISKTNTLVV-GDGA 168
Query: 459 NDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 497
ND K A + A +V K+ + + + + + I
Sbjct: 169 NDLSMFKHAHIKIAFN--AKEVLKQHATHCINEPDLALI 205
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 38.0 bits (89), Expect = 0.006
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
E AV GD ND L+ A G AMG + K +D + T N
Sbjct: 234 ETAAV-GDSLNDKSMLEAAGKGVAMG-NAREDIKSIADAV-TLTN 275
Score = 33.0 bits (76), Expect = 0.23
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN-RRVRDN 405
E A+++ QR GI + + TG SI GI + ++I N + D
Sbjct: 24 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI----KTWVIS----ANGAVIHDP 75
Query: 406 NGEV-QQNLLDK 416
G + +DK
Sbjct: 76 EGRLYHHETIDK 87
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 37.9 bits (89), Expect = 0.007
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
E ++ GDG ND L+ A +G AMG + K A+D + T
Sbjct: 205 ETMSF-GDGGNDISMLRHAAIGVAMGQ-AKEDVKAAADYV-TAPI 246
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 37.5 bits (86), Expect = 0.008
Identities = 21/76 (27%), Positives = 27/76 (35%)
Query: 416 KVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGI 475
KV R SDK K ++D G+ GD ND P + D F +G
Sbjct: 164 KVTMGSRFYTVHGNSDKGKAAKILLDFYKRLGQIESYAVGDSYNDFPMFEVVDKVFIVGS 223
Query: 476 TGTDVAKEASDIILTD 491
A+ S II
Sbjct: 224 LKHKKAQNVSSIIDVL 239
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural
genomics, BSGC structure funded by NIH structure
initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.108.1.10
Length = 268
Score = 37.5 bits (88), Expect = 0.009
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
E+V GD ND ++A + AM + KEASDI+ T N
Sbjct: 208 EIVVF-GDNENDLFMFEEAGLRVAME-NAIEKVKEASDIV-TLTN 249
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 37.2 bits (87), Expect = 0.012
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
E + GDG ND + +DV AM K+ + I +D
Sbjct: 218 ETICF-GDGQNDIVMFQASDVTIAMK-NSHQQLKDIATSI-CEDI 259
>3dao_A Putative phosphatse; structural genomics, joint center for S
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Length = 283
Score = 36.8 bits (86), Expect = 0.017
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
EV GD ND L+ A + +A+ A+
Sbjct: 229 EVCCF-GDNLNDIEMLQNAGISYAVS-NARQEVIAAAKHT-CAPY 270
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
{Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
2hf2_A
Length = 271
Score = 36.7 bits (86), Expect = 0.017
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
VVA+ GD ND LK A FAMG + K+ + TDDN
Sbjct: 209 NVVAI-GDSGNDAEMLKMARYSFAMG-NAAENIKQIARYA-TDDN 250
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 36.7 bits (86), Expect = 0.019
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
E++A+ GD ND ++ A VG A+ KE ++ + T N
Sbjct: 216 EIMAI-GDQENDIAMIEYAGVGVAVD-NAIPSVKEVANFV-TKSN 257
Score = 31.0 bits (71), Expect = 1.2
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI 392
P V AI + G+ + + TG + + + +PG DY I
Sbjct: 25 PAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPG-DYCI 69
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 36.4 bits (85), Expect = 0.019
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
E++A GDG ND P LK A +G AMG ++ + +D + TD
Sbjct: 212 EIMAC-GDGGNDIPMLKAAGIGVAMGN-ASEKVQSVADFV-TDTV 253
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 36.4 bits (85), Expect = 0.020
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
EV+A+ GDG ND +K A +G AMG + K+A+D I T N
Sbjct: 215 EVIAI-GDGYNDLSMIKFAGMGVAMG-NAQEPVKKAADYI-TLTN 256
Score = 31.0 bits (71), Expect = 1.3
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI 392
E + + Q GI + + +G +A + + + G +++
Sbjct: 25 SRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFG-GFIL 69
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 36.4 bits (85), Expect = 0.021
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
+VVA+ G +D P ++ A +G AMG K +D + T N
Sbjct: 220 DVVAI-GHQYDDLPMIELAGLGVAMG-NAVPEIKRKADWV-TRSN 261
Score = 30.6 bits (70), Expect = 1.6
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN-RRVRDN 405
+AI+ ++ GI + +VT + +A+ IA + + LI + + +
Sbjct: 26 QATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKL----DAKLIT----HSGAYIAEK 77
Query: 406 NGEV 409
Sbjct: 78 IDAP 81
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 36.5 bits (85), Expect = 0.023
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
++A GDG ND LK A +AM K A++ N
Sbjct: 246 HLMAF-GDGGNDIEMLKLAKYSYAMA-NAPKNVKAAANYQ-AKSN 287
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 35.4 bits (82), Expect = 0.040
Identities = 25/140 (17%), Positives = 37/140 (26%), Gaps = 34/140 (24%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKE 397
I + + + ++ AG +VT N IA G+ +LI E
Sbjct: 89 IRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGV-----QHLIATDPE--- 140
Query: 398 FNRRVRDNN--GEVQQNLLD---KVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVA 452
RD G ++ KV R+ E
Sbjct: 141 ----YRDGRYTGRIEGTPSFREGKV-VRVNQWLAGMGLALGDF------------AESYF 183
Query: 453 VTGDGTNDGPALKKADVGFA 472
D ND P L+ A
Sbjct: 184 Y-SDSVNDVPLLEAVTRPIA 202
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 35.5 bits (82), Expect = 0.048
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 33/159 (20%)
Query: 344 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 400
P+ PE+PE + G + + +G + + + + DY LE
Sbjct: 178 PLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSL-----DYAQSNTLE------ 226
Query: 401 RVRDN--NGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGT 458
+ G+V ++ K ++ + VAV GDG
Sbjct: 227 -IVSGKLTGQVLGEVVSA-------------QTKADILLTLAQQYDVEIHNTVAV-GDGA 271
Query: 459 NDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 497
ND + A +G A + + + +
Sbjct: 272 NDLVMMAAAGLGVAYH--AKPKVEAKAQTAVRFAGLGGV 308
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 34.8 bits (81), Expect = 0.055
Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 33/159 (20%)
Query: 344 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 400
E IK+ + G + +V+G I K G+ DY L
Sbjct: 76 TPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL-----DYAFANRLI------ 124
Query: 401 RVRDN--NGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGT 458
V+D G+V+ +L + + K +++ + + + VAV GDG
Sbjct: 125 -VKDGKLTGDVEGEVLKE-------------NAKGEILEKIAKIEGINLEDTVAV-GDGA 169
Query: 459 NDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 497
ND KKA + A + KE +DI + + I
Sbjct: 170 NDISMFKKAGLKIAFC--AKPILKEKADICIEKRDLREI 206
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 34.8 bits (80), Expect = 0.081
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVY 508
+A GD ND L+ G+ + T AK ++I TD +S G +
Sbjct: 229 RAIAF-GDSGNDVRMLQTVGNGYLLK-NATQEAKNLHNLI-TDSEYS-------KG--IT 276
Query: 509 DSISKFLQF 517
+++ K + F
Sbjct: 277 NTLKKLIGF 285
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 34.2 bits (79), Expect = 0.085
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAM-GITGTDVAKEASDIILTD 491
+++ + GDG D A AD G K+ + +TD
Sbjct: 173 KIIMI-GDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITD 215
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 33.4 bits (77), Expect = 0.13
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 445 SAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDD 492
S V+A GD ND L +A G V +E
Sbjct: 143 SLYYRVIAA-GDSYNDTTMLSEAHAGILFHAPEN-VIREFPQFPAVHT 188
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 33.6 bits (77), Expect = 0.23
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 35/160 (21%)
Query: 344 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 400
+ P ++ +R G +V+G +A + + DY+ LE
Sbjct: 256 ELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELML-----DYVAANELE------ 304
Query: 401 RVRDN--NGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDS-KISAGREVVAVTGDG 457
+ D G V ++D+ + K T ++ + + VAV GDG
Sbjct: 305 -IVDGTLTGRVVGPIIDR-------------AGKATALREFAQRAGVPM-AQTVAV-GDG 348
Query: 458 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 497
ND L A +G A +E +D L+ ++
Sbjct: 349 ANDIDMLAAAGLGIAF--NAKPALREVADASLSHPYLDTV 386
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 32.9 bits (76), Expect = 0.27
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDII-LTDDN 493
+ +A GDG ND L A G M K+ + + N
Sbjct: 227 DCIAF-GDGMNDAEMLSMAGKGCIMA-NAHQRLKDLHPELEVIGSN 270
Score = 31.7 bits (73), Expect = 0.60
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN-RRVRDN 405
P E +K GI TG + I GI Y+I N RV D+
Sbjct: 41 PYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGI----RSYMIT----SNGARVHDS 92
Query: 406 NGEV 409
+G+
Sbjct: 93 DGQQ 96
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 32.8 bits (74), Expect = 0.31
Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%)
Query: 342 EDPVRP--EVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN 399
E +RP EV + + AG + + TG G++ E I +
Sbjct: 211 EIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDV- 269
Query: 400 RRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTN 459
+ N Q L K P + A + I +V V GD
Sbjct: 270 --LEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIV-GDSLA 326
Query: 460 DGPALKKAD---VGFAMGITGTDVAKEAS----DIILTDDNFSSIVKAV 501
D + +K +G G+ G D A E D ++ ++ + +
Sbjct: 327 DLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVI--NHLGELRGVL 373
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 31.9 bits (72), Expect = 0.62
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 493
V + GD ND P + D+ +G ++ T
Sbjct: 196 FAVGL-GDSLNDLPLFRAVDLAVYVG-----RGDPPEGVLATPAP 234
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 31.6 bits (71), Expect = 0.72
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMG 474
+ + GDG ND P L+ D +
Sbjct: 210 TTLGL-GDGPNDAPLLEVMDYAVIVK 234
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.85
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 23/88 (26%)
Query: 339 IGIEDPVRPEVPEAIKK---CQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEG 395
I D + E PE+I+K QR + D A S + + + L
Sbjct: 74 IAQADRLTQE-PESIRKWREEQRKRLQEL----D----AASKVMEQEWREKAKKDL---- 120
Query: 396 KEFNRR-------VRDNNGEVQQNLLDK 416
+E+N+R + NN + +
Sbjct: 121 EEWNQRQSEQVEKNKINNRIADKAFYQQ 148
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 31.0 bits (71), Expect = 1.1
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNF 494
+ + GD ND + + G + D ++
Sbjct: 180 QTLVC-GDSGNDIGLFETSARGVIVR-NAQPELLHWYDQWGDSRHY 223
Score = 29.5 bits (67), Expect = 3.4
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 343 DPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILE-GKEFNRR 401
D E + +R + TG + ++AR + + G+++P DY + G E
Sbjct: 17 DQQALEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLMEP--DYWLTAVGSE---- 70
Query: 402 VRDNNGEVQ--QNLLDKVWPR 420
+ G Q + L + W R
Sbjct: 71 IYHPEGLDQHWADYLSEHWQR 91
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily,
NYSGXRC, target 9265J, lyase, structural genomics,
PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Length = 455
Score = 31.2 bits (71), Expect = 1.3
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
E+ + P+ + +RA T++ TG++ +
Sbjct: 247 WEECLSPDDTDGFALIKRAHPTVKFTTGEHEYS 279
>3kdr_A HK97 family phage portal protein; PS structural genomics, protein
structure initiative, midwest for structural genomics;
2.90A {Corynebacterium diphtheriae}
Length = 310
Score = 29.9 bits (67), Expect = 2.3
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 389 DYLILEGKEFNRRVRDNNGEVQQ--NLLDKVW----PRLRVLARSSPSDKYTLVKGMIDS 442
D L+ G RD +G ++ W +RV ++ + + G+
Sbjct: 69 DDLLFNGVACWALDRDESGTCIGAIHIPLDTWQIEENTVRVNGKAVDPMEVCIFVGIHGG 128
Query: 443 KISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKA 500
++ E L +A A ++ ++ L+ D+ I+
Sbjct: 129 LLTHASETFTDAR-------NLVRAAARVAQNPAALIELRQTNNAQLSPDDVDRIING 179
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.6
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 408 EVQQNLLDKVWPRLRVLA-RSSPSDKYTL-VKGMID 441
E Q L K+ L++ A S+P+ L +K ++
Sbjct: 18 EKQA--LKKLQASLKLYADDSAPA----LAIKATME 47
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 29.9 bits (68), Expect = 2.8
Identities = 6/78 (7%), Positives = 18/78 (23%), Gaps = 14/78 (17%)
Query: 320 DPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTA----- 374
D ++ ++ L + + E + + + + D I
Sbjct: 129 DFARFSQAKLL-SLASIFNS--PLLDGKALTEIFTQAKARQMI---ICADMIKPRLNETL 182
Query: 375 ---RSIATKCGIVKPGED 389
+ + P
Sbjct: 183 DDICEALSYVDYLFPNFA 200
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
binding; 2.8A {Sulfolobus solfataricus}
Length = 268
Score = 29.6 bits (67), Expect = 3.3
Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 17/152 (11%)
Query: 243 KNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRN--VIEPMACDGLRT-IS 299
N Y + +E++ + + + F +++ ++ N +I P+ L I
Sbjct: 24 NNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHIL 83
Query: 300 IAYKDFVTDKAEINQVHIEGDPNWDDESNI----VSHLTCL-CVIGI---EDPVRPEVPE 351
+ D ++ V I G P + + + L + GI PV+ + +
Sbjct: 84 QLDPTYQRDIEKV-HVRIVGIPR---VIELRKIRSTDIGKLITIDGILVKVTPVKERIYK 139
Query: 352 AIKKCQRAGITIRMVTGDNINTARSIA--TKC 381
A K ++ + T C
Sbjct: 140 ATYKHIHPDCMQEFEWPEDEEMPEVLEMPTIC 171
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold,
acid sugar dehydratase, D-araninonate, isomera; HET: EPE
D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A
3dfh_A 3s47_A 3gy1_A
Length = 401
Score = 29.5 bits (67), Expect = 3.6
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
IED + P E + R+ ++ + G+ N
Sbjct: 232 IEDILPPNQTEWLDNI-RSQSSVSLGLGELFNN 263
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme
function initiative, lyase; 1.45A {Caulobacter
crescentus} PDB: 4fi4_A 3thu_A
Length = 425
Score = 29.5 bits (67), Expect = 4.2
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
+ED V E + R T + G+
Sbjct: 258 LEDSVPAENQAGFRLI-RQHTTTPLAVGEIFAH 289
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium
binding site, lyase; 1.95A {Ralstonia pickettii} PDB:
3rra_A
Length = 405
Score = 29.5 bits (67), Expect = 4.2
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
IE+PV E E + A + + G+ + +
Sbjct: 209 IEEPVLAEQAETYARL-AAHTHLPIAAGERMFS 240
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold,
mannonate dehydratase, D-mannonate, lyase; HET: CS2;
1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A
2qjn_A* 2qjm_A*
Length = 418
Score = 29.5 bits (67), Expect = 4.2
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
+ED E EA + R + G+ NT
Sbjct: 251 LEDCTPAENQEAFRLV-RQHTVTPLAVGEIFNT 282
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase,
mandelate racemase subgroup, enzyme function initia EFI;
1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Length = 400
Score = 29.5 bits (67), Expect = 4.3
Identities = 4/33 (12%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
EDP++ + ++ + A + + + +
Sbjct: 241 HEDPIKMDSLSSLTRY-AAVSPAPISASETLGS 272
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 29.2 bits (66), Expect = 4.4
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 270 HLEKFTKDMQGRLVRN--VIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDES 327
LE F D+ L+ + A +R I D + ++ + G N
Sbjct: 50 DLEMFDPDLADLLIEKPDDVIRAAQQAIRNI-----DRLRKNVDL-NIRFSGISNVIPLR 103
Query: 328 NIVS-HLTCL-CVIGI---EDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCG 382
+ S + V GI D +RP + +A+ +C+ + N+ T S+ ++CG
Sbjct: 104 ELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECG 163
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein;
enolase, dehydratase, enzyme function initiative, EFI,
lyase; 1.80A {Enterobacter SP}
Length = 422
Score = 29.1 bits (66), Expect = 4.4
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
IED + P+ +++ R + + G+ N
Sbjct: 253 IEDILPPQQSAWLEQV-RQQSCVPLALGELFNN 284
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural
genomics, protein structure initiative, PSI, nysgrc;
1.80A {Zymomonas mobilis}
Length = 403
Score = 29.1 bits (66), Expect = 4.8
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
E+ P P +K+ + I I + +G+ I +
Sbjct: 240 YEEINTPLNPRLLKEA-KKKIDIPLASGERIYS 271
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate
dehydratase related protein, enzyme funct intitiative,
lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis}
PDB: 3tw9_A 3twa_A 3twb_A*
Length = 440
Score = 29.2 bits (66), Expect = 4.9
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
+EDPV PE E +K R + + G+
Sbjct: 271 LEDPVAPENTEWLKML-RQQSSTPIAMGELFVN 302
>2o56_A Putative mandelate racemase; dehydratase, structural genomics,
protein structure initiati 2; 2.00A {Salmonella
typhimurium}
Length = 407
Score = 29.2 bits (66), Expect = 5.2
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
E+PV P P +K+ + I + G+ I
Sbjct: 246 YEEPVMPLNPAQMKQV-ADKVNIPLAAGERIYW 277
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein;
enolase, Mg ION, PSI-2, NYSGXRC, structural genomics;
2.90A {Rubrobacter xylanophilus dsm 9941}
Length = 410
Score = 29.1 bits (66), Expect = 5.3
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
+E+P PE +A+ + R + + G+N+ T
Sbjct: 241 LEEPTPPENLDALAEV-RRSTSTPICAGENVYT 272
>2poz_A Putative dehydratase; octamer, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Length = 392
Score = 29.1 bits (66), Expect = 5.5
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
+E+P P A+K I + + G+ + T
Sbjct: 230 VEEPCDPFDNGALKVI-SEQIPLPIAVGERVYT 261
>2gl5_A Putative dehydratase protein; structural genomics, protein
structure initiati nysgxrc; 1.60A {Salmonella
typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Length = 410
Score = 28.8 bits (65), Expect = 5.7
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
E+P+ P + ++K TI + TG+ T
Sbjct: 249 YEEPIHPLNSDNMQKV-SRSTTIPIATGERSYT 280
>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function
initiative, isomerase; 2.00A {Pectobacterium carotovorum
subsp}
Length = 426
Score = 28.7 bits (65), Expect = 5.9
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
+EDP E + R + G+ N+
Sbjct: 259 MEDPTPAENQACFRLI-RQHTVTPIAVGEVFNS 290
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function
initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio
japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A*
3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Length = 424
Score = 28.7 bits (65), Expect = 6.3
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
+ED V E E+ K R T + G+ N+
Sbjct: 257 MEDAVPAENQESFKLI-RQHTTTPLAVGEVFNS 288
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase,
aldolase, structural genomics, biology; 1.35A
{Unidentified}
Length = 412
Score = 28.8 bits (65), Expect = 6.7
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
E+PV P EAI + +I + TG+ + T
Sbjct: 232 FEEPVPPGQEEAIAQV-AKHTSIPIATGERLTT 263
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Length = 394
Score = 28.8 bits (65), Expect = 7.1
Identities = 4/33 (12%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
E ++ + K R+ + T
Sbjct: 237 AEATLQHDDLSGHAKL-VENTRSRICGAEMSTT 268
>3oqg_A HPY188I; endonuclease-DNA complex, restriction enzyme, HPY188I,
inter GIY-YIG nuclease, catalytic mechanism; HET: DNA;
1.75A {Helicobacter pylori} PDB: 3or3_A
Length = 180
Score = 27.9 bits (61), Expect = 7.8
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 215 RDDLPEEVFTRVYTFNSVRKSMSTVIPKKNGYRVYTKGASEIILKKCSYIY 265
DDL +E+ + + + + ++P + ++ E +K +Y
Sbjct: 23 VDDLKDEIDYKDFEYKEYFNLLCELVPNNSLEKLEINAIDEKNMKNEGLVY 73
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain
protein; aldolase, structural genomics, biology; 2.90A
{Labrenzia alexandrii}
Length = 404
Score = 28.4 bits (64), Expect = 8.4
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
E+P+ PE PE + + +I + TG+ + T
Sbjct: 239 FEEPIPPEKPEDMAEV-ARYTSIPVATGERLCT 270
>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr
unknown function; HET: EHM; 1.70A {Xanthomonas
campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Length = 441
Score = 28.3 bits (63), Expect = 9.3
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
IE+P P+ ++ + + TG++
Sbjct: 273 IEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQN 305
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein;
structural genomics, protein structure initiative; HET:
RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Length = 433
Score = 28.1 bits (63), Expect = 9.6
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 373
E+PV P+ A+ + + I + TG+ + T
Sbjct: 234 YEEPVPPDNVGAMAQV-ARAVRIPVATGERLTT 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.393
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,246,850
Number of extensions: 650897
Number of successful extensions: 1551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1490
Number of HSP's successfully gapped: 120
Length of query: 668
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 568
Effective length of database: 3,909,693
Effective search space: 2220705624
Effective search space used: 2220705624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)