RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11770
(668 letters)
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 140 bits (353), Expect = 3e-39
Identities = 70/178 (39%), Positives = 94/178 (52%), Gaps = 16/178 (8%)
Query: 329 IVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGE 388
I S T DP R EV +I+ C+ AGI + M+TGDN TA +I + GI E
Sbjct: 5 ICSDKTGTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENE 64
Query: 389 DY--LILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISA 446
+ G+EF+ + R AR PS K +V+ + +
Sbjct: 65 EVADRAYTGREFDDLPLAEQ--------REACRRACCFARVEPSHKSKIVEYLQ-----S 111
Query: 447 GREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWG 504
E+ A+TGDG ND PALKKA++G AMG +GT VAK AS+++L DDNFS+IV AV G
Sbjct: 112 YDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEG 168
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 126 bits (318), Expect = 3e-32
Identities = 46/406 (11%), Positives = 109/406 (26%), Gaps = 69/406 (16%)
Query: 107 LVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIV 166
+ L +G + I + + ++ K K + +
Sbjct: 26 VYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKL--KSLGLNSNWDML-- 81
Query: 167 EGISVNSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRV 226
I+ + ++ K++ + A + + Q + +L +
Sbjct: 82 -----------FIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLN- 129
Query: 227 YTFNSVRKSMSTV-IPKKNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRN 285
+ + V + K N Y + A+ + + + ++
Sbjct: 130 --EQLPLQFLDNVKVGKNNIYAALEEFATTELHVSDATL----------------FSLKG 171
Query: 286 VIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPV 345
+ +A + + + K + D E I I E +
Sbjct: 172 ALWTLAQEVYQEWYLGSKLYE-----------------DVEKKIARTTFKTGYIYQEIIL 214
Query: 346 --RPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVR 403
EV + + AG + + TG G++ E I +
Sbjct: 215 RPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAEN 274
Query: 404 DNNGEVQQNLLDK-VWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGP 462
+ + + Y + I +K + V + GD D
Sbjct: 275 MYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNK-----DDVFIVGDSLADLL 329
Query: 463 ALKKAD---VGFAMGITGTDVAKE----ASDIILTDDNFSSIVKAV 501
+ +K +G G+ G D A E +D ++ ++ + +
Sbjct: 330 SAQKIGATFIGTLTGLKGKDAAGELEAHHADYVI--NHLGELRGVL 373
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 112 bits (281), Expect = 7e-29
Identities = 32/221 (14%), Positives = 71/221 (32%), Gaps = 19/221 (8%)
Query: 136 MTAVQAYVCEVQYK------NIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELP 189
MT + ++ D + + + + K +
Sbjct: 2 MTVAHMWFDNQIHEADTTEDQSGATFDKRSPTWTALSRIAGLCNRAVFKAGQENISVSKR 61
Query: 190 KQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIPKKNG---Y 246
G+ +E ALL + + + +RD P+ +FNS K ++ +++ +
Sbjct: 62 DTAGDASESALLKCIELSCGSVRKMRDRNPK---VAEISFNSTNKYQLSIHEREDNPQSH 118
Query: 247 RVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFV 306
+ KGA E IL +CS I + + + +N + G R + +
Sbjct: 119 VLVMKGAPERILDRCSSILVQGKEIPLDKEMQD--AFQNAYLELGGLGERVLGFCQLNLP 176
Query: 307 TDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRP 347
+ K + D+ + L + ++ + D
Sbjct: 177 SGKFPRGF-----KFDTDELNFPTEKLCFVGLMSMIDHHHH 212
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 106 bits (265), Expect = 6e-25
Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 31/214 (14%)
Query: 462 PALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTV 521
P A + + + +AK+ + + S+ GR +Y+++ +F+++ ++
Sbjct: 193 PEGLPAVITTCLALGTRRMAKKNAIV-------RSLPSVETLGRAIYNNMKQFIRYLISS 245
Query: 522 NVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKA 581
NV V+ F+ A L VQ+LWVNL+ D L + AL P D++ R P +
Sbjct: 246 NVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEP 305
Query: 582 LISKTMMKNIIGQAIYQLVIIFGILFFGDKLLDIPTGRGAEYGSL--------------- 626
LIS + + Y G + + G G Y L
Sbjct: 306 LISGWLFFRYMAIGGYVGAATVGAAAWW--FMYAEDGPGVTYHQLTHFMQCTEDHPHFEG 363
Query: 627 -------PTQHFTIIFNTFVLMTLFNEINARKIH 653
+ T+ + V + + N +N+ +
Sbjct: 364 LDCEIFEAPEPMTMALSVLVTIEMCNALNSLSEN 397
Score = 90.9 bits (225), Expect = 6e-20
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 9 KHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFV 68
++ K+ LQ KL + Q+ S I + +I I D + R +
Sbjct: 126 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH-------FNDPVHGGSWIRGAI 178
Query: 69 RFFIVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDK- 127
+F + V + V A+PEGLP +T LA ++M K N +VR L + ET+G A +
Sbjct: 179 YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGRAIYNNMKQF 238
Query: 128 -TGTLTTNRMTAVQAYVCEV 146
+++N V ++
Sbjct: 239 IRYLISSNVGEVVCIFLTAA 258
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 135
Score = 93.2 bits (231), Expect = 4e-23
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 44/173 (25%)
Query: 329 IVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGE 388
++ T G D ++ A+++ +R GI + M+TGDN +A +I+ + +
Sbjct: 6 VIFDKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIA 65
Query: 389 DYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGR 448
+ P K VK + +
Sbjct: 66 EV-------------------------------------LPHQKSEEVKKL------QAK 82
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
EVVA GDG ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 83 EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 134
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 239
Score = 83.8 bits (206), Expect = 8e-19
Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 25/179 (13%)
Query: 182 PENANELPKQVGNKTECALLGFVVAIGKNYQTVRD-----------DLPEEVFTRVYT-- 228
+ ++VG TE AL V + VR+ + ++ + +T
Sbjct: 67 FNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLE 126
Query: 229 FNSVRKSMSTVIPKKNG------YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRL 282
F+ RKSMS +++ KGA E ++ +C+Y+ + + L
Sbjct: 127 FSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKIL 186
Query: 283 VRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGI 341
D LR +++A +D + E+ + + LT + V+G+
Sbjct: 187 SVIKEWGTGRDTLRCLALATRDTPPKREEMVL------DDSSRFMEYETDLTFVGVVGM 239
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 78.9 bits (193), Expect = 4e-17
Identities = 31/242 (12%), Positives = 67/242 (27%), Gaps = 31/242 (12%)
Query: 277 DMQGRLVRN-----VIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVS 331
D G + N +++ A + E P+ E
Sbjct: 10 DFDGTITMNDNIINIMKTFAPPEWMALKDGVLSKTLSIKEGVGRMFGLLPSSLKEE---- 65
Query: 332 HLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYL 391
+ + +R E + I +++G +
Sbjct: 66 ---ITSFVLEDAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVE-------- 114
Query: 392 ILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVV 451
+ N DN+ +D + K +++ ++S + +
Sbjct: 115 -KDRIYCNHASFDND----YIHIDWPHSCKGTCSNQCGCCKPSVIH-----ELSEPNQYI 164
Query: 452 AVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 511
+ GD D A K +D+ FA + +E + L +F I K + + V + +
Sbjct: 165 IMIGDSVTDVEAAKLSDLCFARDY-LLNECREQNLNHLPYQDFYEIRKEIENVKEVQEWL 223
Query: 512 SK 513
Sbjct: 224 QN 225
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 59.6 bits (143), Expect = 2e-10
Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 46/202 (22%)
Query: 345 VRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRD 404
+ + EAI++ + GI I +VTG+ + A + + G P +R+
Sbjct: 20 IHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAISYKKKRIFL 79
Query: 405 NNGEVQQNLLDKVWPRL--RVLARSSPSDKYTLVKGMIDSKISAGREV------------ 450
+ + + L +++ R + + P + LV + RE+
Sbjct: 80 ASMDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINELNLNLVAVD 139
Query: 451 -------------------------------VAVTGDGTNDGPALKKADVGFAMGITGTD 479
VA GDG ND A K A+
Sbjct: 140 SGFAIHVKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYKVAVA-QAPK 198
Query: 480 VAKEASDIILTDDNFSSIVKAV 501
+ KE +D + + +A+
Sbjct: 199 ILKENADYVTKKEYGEGGAEAI 220
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 49.2 bits (116), Expect = 4e-07
Identities = 26/203 (12%), Positives = 55/203 (27%), Gaps = 44/203 (21%)
Query: 342 EDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKP---GEDYLILEGKEF 398
+ + + E+I+ ++ G+T+ +++G+ I ++ GI P ++ +
Sbjct: 18 DRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPVFGENGGIMFDNDGS 77
Query: 399 NRRVRDNNG-----------------------------EVQQNLLDKVWPRLRVLARSSP 429
++ N G ++ +D V
Sbjct: 78 IKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIF 137
Query: 430 SDKYTLVKGMIDSKISAGREV-----------VAVTGDGTNDGPALKKADVGFAMGITGT 478
Y+ + + V GD ND P + T
Sbjct: 138 YSGYSWHLMNRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQLPVRKACPA-NAT 196
Query: 479 DVAKEASDIILTDDNFSSIVKAV 501
D K SD + I +
Sbjct: 197 DNIKAVSDFVSDYSYGEEIGQIF 219
>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 206
Score = 47.5 bits (112), Expect = 1e-06
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVM 502
V GD ND L +A G +V +E + + + +
Sbjct: 146 YRVIAAGDSYNDTTMLSEAHAGILFH-APENVIREFPQFPAV-HTYEDLKREFL 197
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 46.5 bits (109), Expect = 3e-06
Identities = 22/156 (14%), Positives = 47/156 (30%), Gaps = 20/156 (12%)
Query: 337 CVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGK 396
+ + P + E + + Q + + +++G + +A+K +
Sbjct: 75 LIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLN---IPATNVFANRL 131
Query: 397 EFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGD 456
+F + Q + S V ++ K + ++ GD
Sbjct: 132 KFYFNGEYAGFDETQPTAE--------------SGGKGKVIKLLKEKFHFKKIIM--IGD 175
Query: 457 GTNDGPALKKADVGFAMG-ITGTDVAKEASDIILTD 491
G D A AD G K+ + +TD
Sbjct: 176 GATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITD 211
>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 210
Score = 44.8 bits (104), Expect = 1e-05
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 455 GDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
GDG ND KKA + A + KE +DI + + I+K +
Sbjct: 165 GDGANDISMFKKAGLKIAFC--AKPILKEKADICIEKRDLREILKYI 209
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 42.6 bits (99), Expect = 8e-05
Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 4/147 (2%)
Query: 368 GDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARS 427
+ + + + I + + E V D ++ V +
Sbjct: 126 AKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLI 185
Query: 428 SPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDI 487
P + + + V GD ND LK A FAMG + K+ +
Sbjct: 186 IPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMG-NAAENIKQIARY 244
Query: 488 ILTDDNFSSIVKAVMWGRNVYDSISKF 514
D+N + + + V D+ F
Sbjct: 245 ATDDNNHEGALNVI---QAVLDNTYPF 268
Score = 29.1 bits (64), Expect = 1.7
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 346 RPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDN 405
+P ++ ++ GI + +G+ S + E + E V ++
Sbjct: 22 QPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKD----EISFV---AENGALVYEH 74
Query: 406 NGEVQQNLLDKVWPR 420
++ L + R
Sbjct: 75 GKQLFHGELTRHESR 89
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 42.3 bits (98), Expect = 1e-04
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
Query: 385 KPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKI 444
+ +I+ ++ V N + +N L + +
Sbjct: 160 RTMNKLMIVLDPSESKTVIGNLKQKFKNKLTIFTTYNGHAEVTKLGHDKYTGINYLLKHY 219
Query: 445 SAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVM 502
+ + V V GD ND L FA+ TD AK + +L + V ++
Sbjct: 220 NISNDQVLVVGDAENDIAMLSNFKYSFAVA-NATDSAKSHAKCVLPVSHREGAVAYLL 276
Score = 30.7 bits (68), Expect = 0.49
Identities = 10/76 (13%), Positives = 21/76 (27%)
Query: 345 VRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRD 404
V E +AIK+ G + + TG + S + + K +
Sbjct: 29 VPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVYINGTIVYDQ 88
Query: 405 NNGEVQQNLLDKVWPR 420
+ ++
Sbjct: 89 IGYTLLDETIETDVYA 104
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 41.5 bits (96), Expect = 2e-04
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
E AV GD ND L+ A G AMG + K +D + ++ + +
Sbjct: 231 ETAAV-GDSLNDKSMLEAAGKGVAMG-NAREDIKSIADAVTLTNDEHGVAHMM 281
Score = 27.6 bits (60), Expect = 5.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 347 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGI 383
E A+++ QR GI + + TG SI GI
Sbjct: 21 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI 57
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 41.1 bits (95), Expect = 2e-04
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 431 DKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILT 490
K + +I E ++ GDG ND L+ A +G AMG + K A+D +
Sbjct: 186 TKQKGIDEIIRHFGIKLEETMSF-GDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYVTA 243
Query: 491 DDNFSSIVKAV 501
+ I KA+
Sbjct: 244 PIDEDGISKAM 254
Score = 26.4 bits (57), Expect = 9.7
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 345 VRPEVPEAIKKCQRAGITIRMVTGDNINTARSIA 378
+ EA++ G+ I + TG +++
Sbjct: 20 IPSSTIEALEAAHAKGLKIFIATGRPKAIINNLS 53
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 41.1 bits (95), Expect = 3e-04
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 448 REVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
E + GD ND ++ A VG A+ KE ++ + + + A+
Sbjct: 213 PEEIMAIGDQENDIAMIEYAGVGVAVD-NAIPSVKEVANFVTKSNLEDGVAFAI 265
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 40.0 bits (92), Expect = 6e-04
Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Query: 390 YLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGRE 449
L+++ E +++ E ++++ L + + +++ +E
Sbjct: 148 LLLIDTPERLDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKE 207
Query: 450 VVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 501
+ V GD ND ++A + AM + KEASDI+ +N S + +
Sbjct: 208 EIVVFGDNENDLFMFEEAGLRVAME-NAIEKVKEASDIVTLTNNDSGVSYVL 258
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 37.0 bits (84), Expect = 0.004
Identities = 23/81 (28%), Positives = 29/81 (35%)
Query: 408 EVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKA 467
EV KV R SDK K ++D G+ GD ND P +
Sbjct: 156 EVLVEGGFKVTMGSRFYTVHGNSDKGKAAKILLDFYKRLGQIESYAVGDSYNDFPMFEVV 215
Query: 468 DVGFAMGITGTDVAKEASDII 488
D F +G A+ S II
Sbjct: 216 DKVFIVGSLKHKKAQNVSSII 236
>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus
influenzae, HI1679 [TaxId: 727]}
Length = 177
Score = 35.4 bits (81), Expect = 0.010
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 451 VAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILT 490
A GD + D PA FA+ K A D +L+
Sbjct: 99 TAYIGDDSVDLPAFAACGTSFAVA-DAPIYVKNAVDHVLS 137
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 291
Score = 31.8 bits (72), Expect = 0.21
Identities = 19/158 (12%), Positives = 45/158 (28%), Gaps = 24/158 (15%)
Query: 344 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVR 403
++ K Q+ GI + + + + + + G+ N +V
Sbjct: 135 MLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHS------------NVKVV 182
Query: 404 DNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPA 463
N + +N + K + + + +K + + GD D
Sbjct: 183 SNFMDFDENGVLKGFKGELI---HVFNKHDGALKNTDYFSQLKDNSNIILLGDSQGDLRM 239
Query: 464 LK---KADVGFAMGITGTDVA------KEASDIILTDD 492
+ +G V ++ DI+L +
Sbjct: 240 ADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKE 277
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 30.5 bits (67), Expect = 0.50
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMG 474
+ + GDG ND P L+ D +
Sbjct: 205 TTLGL-GDGPNDAPLLEVMDYAVIVK 229
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 244
Score = 30.0 bits (66), Expect = 0.71
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 449 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNF 494
V GD ND + + G + D ++
Sbjct: 179 SQTLVCGDSGNDIGLFETSARGVIVR-NAQPELLHWYDQWGDSRHY 223
Score = 28.4 bits (62), Expect = 2.6
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 341 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNR 400
+ D E + +R + TG + ++AR + + G+++P DY +
Sbjct: 15 VGDQQALEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLMEP--DYWLTAVGSEIY 72
Query: 401 RVRDNNGEVQQNLLDKVWPR 420
+ + + L + W R
Sbjct: 73 H-PEGLDQHWADYLSEHWQR 91
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 29.2 bits (64), Expect = 1.6
Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 31/139 (22%)
Query: 214 VRDDLPEEVFTRVYTFNSVRKSMSTVIPKKNGYR-----------VYTKG---ASEIILK 259
+D +E+ + RK + + G V+ KG A++I+ K
Sbjct: 8 TKDLFGKELRMHQRIVATARKVL-----EAAGALELVTPIFEETQVFEKGVGAATDIVRK 62
Query: 260 KCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDK---------- 309
+ R G + +VR +E + + + +
Sbjct: 63 EMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQ 122
Query: 310 --AEINQVHIEGDPNWDDE 326
+ +P D E
Sbjct: 123 FHQVNYEALGSENPILDAE 141
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 27.1 bits (60), Expect = 6.2
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 340 GIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGE 388
++ + EV +++ G T+ +VT + + AR +++ + G+
Sbjct: 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHE-MGFARHVSSHVIFLHQGK 226
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.9 bits (59), Expect = 7.7
Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 349 VPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGK--EFNRRVRDN 405
+ + + + GIT ++ ++ + ++ G+ +I EG+ E + V +
Sbjct: 189 IFNHVLELKAKGITFLIIEHR-LDIVLNYIDHLYVMFNGQ--IIAEGRGEEEIKNVLSD 244
>d1lrza3 d.108.1.4 (A:166-244,A:310-412) Methicillin resistance
protein FemA {Staphylococcus aureus [TaxId: 1280]}
Length = 182
Score = 26.3 bits (57), Expect = 8.5
Identities = 4/19 (21%), Positives = 12/19 (63%)
Query: 353 IKKCQRAGITIRMVTGDNI 371
KK ++ G+ +R ++ + +
Sbjct: 18 TKKVKKNGVKVRFLSEEEL 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.393
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,447,033
Number of extensions: 117991
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 39
Length of query: 668
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 577
Effective length of database: 1,158,166
Effective search space: 668261782
Effective search space used: 668261782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)