BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11771
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 108/193 (55%)
Query: 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALG 196
G + ++Y GG+DG+ +SMERYDP WS M T R + V +Y LG
Sbjct: 107 GATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLG 166
Query: 197 GFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGER 256
G+D N SVE+ DP G W V M+++RS GVA L+ IY VGG DGT +SS E
Sbjct: 167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226
Query: 257 FNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTP 316
+N+R +SW + M + R + G L + G DG+S L+S+E YDP ++ W+++T
Sbjct: 227 YNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTS 286
Query: 317 MLTRRSSIGAAVL 329
M T+R G VL
Sbjct: 287 MGTQRCDAGVCVL 299
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 3/197 (1%)
Query: 136 IGTCSFDGLLYACGGYDGASCLSSMERYD---PLTGVWSSCPAMTTRRRYCRIAVVENCL 192
+ + S +Y GGYDG S LSS+E D GVW S M RR + + +
Sbjct: 56 VASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMI 115
Query: 193 YALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMS 252
Y GGFD + S+ER DP + +W+ + M + R G+ G IYC+GG DG ++
Sbjct: 116 YVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILN 175
Query: 253 SGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQ 312
S E+++ W + PM ++RS V + ++ +GG DG++ L+SVE Y+ + + W
Sbjct: 176 SVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235
Query: 313 LLTPMLTRRSSIGAAVL 329
+T M T R +GA VL
Sbjct: 236 TVTSMTTPRCYVGATVL 252
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 4/191 (2%)
Query: 144 LLYACGGYDGA-SCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTN 202
+L GG+ S + +E+YDP T WS P++T +RRY + + +Y +GG+D +
Sbjct: 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRS 75
Query: 203 YQASVERLD---PRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNV 259
+SVE LD G W V M+ RR G L IY GG DG+ +S ER++
Sbjct: 76 RLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDP 135
Query: 260 RRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLT 319
+ W + M + R +V G + +GG DG + LNSVEKYDP W +TPM T
Sbjct: 136 NIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT 195
Query: 320 RRSSIGAAVLE 330
+RS G A+L
Sbjct: 196 KRSGAGVALLN 206
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 98/237 (41%), Gaps = 37/237 (15%)
Query: 3 IAPMLYRRSRSGVAGLGKMLYVVGGFYC--QLLVFYKYPLYGRPAVNSSCGNYILPTAWV 60
+APM RR +G LG M+YV GGF + +Y P ++ + TA
Sbjct: 96 VAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYD----PNIDQWSMLGDMQTARE 151
Query: 61 SVALQLLRHVKLPLLARDFL--MNSVESESLIKESTECQELLLEAMKYHLLPEQRSLLTT 118
L + V L D L +NSVE KY + +T
Sbjct: 152 GAGLVVASGVIYCLGGYDGLNILNSVE-------------------KYDPHTGHWTNVTP 192
Query: 119 KRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTT 178
T+ G + +Y GG+DG + LSS+E Y+ T W++ +MTT
Sbjct: 193 MATKRS----------GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242
Query: 179 RRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL 235
R Y V+ LYA+ G+D + +S+E DP + W V SM ++R GV L
Sbjct: 243 PRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 105/193 (54%)
Query: 136 IGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYAL 195
IG DG +YA GG G +S+ERY+P W M TRR +AV+ LYA+
Sbjct: 116 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAV 175
Query: 196 GGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGE 255
GGFD TN S E P +W + +M++ RS GV L IY GG DG ++S E
Sbjct: 176 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVE 235
Query: 256 RFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315
R++V +W +APM RRS + +G + +GG DG + L+SVE YDP + W +T
Sbjct: 236 RYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT 295
Query: 316 PMLTRRSSIGAAV 328
M + RS +G AV
Sbjct: 296 RMTSGRSGVGVAV 308
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 105/200 (52%), Gaps = 4/200 (2%)
Query: 135 AIGTCSFDGLLYACGGY----DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN 190
+ C GLLYA GG DG + S+++ Y+P+T WS C M+ R + V++
Sbjct: 64 GLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDG 123
Query: 191 CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMC 250
+YA+GG + SVER +P +W V M +RR GVA L+ +Y VGG DGT
Sbjct: 124 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR 183
Query: 251 MSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNK 310
++S E + RN W I M + RS V + + GG DG LNSVE+YD +
Sbjct: 184 LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 243
Query: 311 WQLLTPMLTRRSSIGAAVLE 330
W + PM RRS++G V +
Sbjct: 244 WTFVAPMKHRRSALGITVHQ 263
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 5/192 (2%)
Query: 144 LLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGF----D 199
L+Y GGY S LS +E Y+P G W + R VV LYA+GG D
Sbjct: 27 LIYTAGGYFRQS-LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 85
Query: 200 STNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNV 259
++++ +P +W+P MS R+ GV +DG IY VGG+ G + +S ER+
Sbjct: 86 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEP 145
Query: 260 RRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLT 319
R+ W +APML+RR V + L +GG DG++ LNS E Y P+ N+W+++T M T
Sbjct: 146 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT 205
Query: 320 RRSSIGAAVLET 331
RS G VL
Sbjct: 206 IRSGAGVCVLHN 217
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 74/147 (50%)
Query: 129 MLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV 188
ML +G + LLYA GG+DG + L+S E Y P W AM T R + V+
Sbjct: 156 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL 215
Query: 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGT 248
NC+YA GG+D + SVER D W V M RRS+ G+ G IY +GG DG
Sbjct: 216 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 275
Query: 249 MCMSSGERFNVRRNSWEPIAPMLSRRS 275
+ S E ++ ++W + M S RS
Sbjct: 276 TFLDSVECYDPDTDTWSEVTRMTSGRS 302
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 188 VENCLYALGGF--DSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGN 245
V +Y GG+ S +Y +E +P G W + + RS + G +Y VGG
Sbjct: 24 VGRLIYTAGGYFRQSLSY---LEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 80
Query: 246 ----DGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSV 301
DG S+ + +N N W P APM R+ V I+G++ +GG+ G NSV
Sbjct: 81 NNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSV 140
Query: 302 EKYDPKLNKWQLLTPMLTRRSSIGAAVLETL 332
E+Y+P+ ++W L+ PMLTRR +G AVL L
Sbjct: 141 ERYEPERDEWHLVAPMLTRRIGVGVAVLNRL 171
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 75/194 (38%), Gaps = 47/194 (24%)
Query: 3 IAPMLYRRSRSGVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSV 62
+APML RR GVA L ++LY VGGF G +NS+ Y W +
Sbjct: 153 VAPMLTRRIGVGVAVLNRLLYAVGGFD------------GTNRLNSAECYYPERNEWRMI 200
Query: 63 ALQLLRHVKLPLLARDFLMNSVESESLIKESTEC---------QELLLEAMKYHLLPEQR 113
MN++ S + + C Q+ L +Y + E
Sbjct: 201 TA----------------MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 244
Query: 114 SLLTTKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSC 173
+ + + + A+G G +Y GGYDG + L S+E YDP T WS
Sbjct: 245 TFVAPMKHRRS----------ALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 294
Query: 174 PAMTTRRRYCRIAV 187
MT+ R +AV
Sbjct: 295 TRMTSGRSGVGVAV 308
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 105/193 (54%)
Query: 136 IGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYAL 195
IG DG +YA GG G +S+ERY+P W M TRR +AV+ LYA+
Sbjct: 115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAV 174
Query: 196 GGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGE 255
GGFD TN S E P +W + +M++ RS GV L IY GG DG ++S E
Sbjct: 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVE 234
Query: 256 RFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315
R++V +W +APM RRS + +G + +GG DG + L+SVE YDP + W +T
Sbjct: 235 RYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT 294
Query: 316 PMLTRRSSIGAAV 328
M + RS +G AV
Sbjct: 295 RMTSGRSGVGVAV 307
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 105/200 (52%), Gaps = 4/200 (2%)
Query: 135 AIGTCSFDGLLYACGGY----DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN 190
+ C GLLYA GG DG + S+++ Y+P+T WS C M+ R + V++
Sbjct: 63 GLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDG 122
Query: 191 CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMC 250
+YA+GG + SVER +P +W V M +RR GVA L+ +Y VGG DGT
Sbjct: 123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR 182
Query: 251 MSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNK 310
++S E + RN W I M + RS V + + GG DG LNSVE+YD +
Sbjct: 183 LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 242
Query: 311 WQLLTPMLTRRSSIGAAVLE 330
W + PM RRS++G V +
Sbjct: 243 WTFVAPMKHRRSALGITVHQ 262
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 5/192 (2%)
Query: 144 LLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGF----D 199
L+Y GGY S LS +E Y+P G W + R VV LYA+GG D
Sbjct: 26 LIYTAGGYFRQS-LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 200 STNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNV 259
++++ +P +W+P MS R+ GV +DG IY VGG+ G + +S ER+
Sbjct: 85 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEP 144
Query: 260 RRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLT 319
R+ W +APML+RR V + L +GG DG++ LNS E Y P+ N+W+++T M T
Sbjct: 145 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT 204
Query: 320 RRSSIGAAVLET 331
RS G VL
Sbjct: 205 IRSGAGVCVLHN 216
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 74/147 (50%)
Query: 129 MLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV 188
ML +G + LLYA GG+DG + L+S E Y P W AM T R + V+
Sbjct: 155 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL 214
Query: 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGT 248
NC+YA GG+D + SVER D W V M RRS+ G+ G IY +GG DG
Sbjct: 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 274
Query: 249 MCMSSGERFNVRRNSWEPIAPMLSRRS 275
+ S E ++ ++W + M S RS
Sbjct: 275 TFLDSVECYDPDTDTWSEVTRMTSGRS 301
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 188 VENCLYALGGF--DSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGN 245
V +Y GG+ S +Y +E +P G W + + RS + G +Y VGG
Sbjct: 23 VGRLIYTAGGYFRQSLSY---LEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 79
Query: 246 ----DGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSV 301
DG S+ + +N N W P APM R+ V I+G++ +GG+ G NSV
Sbjct: 80 NNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSV 139
Query: 302 EKYDPKLNKWQLLTPMLTRRSSIGAAVLETL 332
E+Y+P+ ++W L+ PMLTRR +G AVL L
Sbjct: 140 ERYEPERDEWHLVAPMLTRRIGVGVAVLNRL 170
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 75/194 (38%), Gaps = 47/194 (24%)
Query: 3 IAPMLYRRSRSGVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSV 62
+APML RR GVA L ++LY VGGF G +NS+ Y W +
Sbjct: 152 VAPMLTRRIGVGVAVLNRLLYAVGGFD------------GTNRLNSAECYYPERNEWRMI 199
Query: 63 ALQLLRHVKLPLLARDFLMNSVESESLIKESTEC---------QELLLEAMKYHLLPEQR 113
MN++ S + + C Q+ L +Y + E
Sbjct: 200 TA----------------MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 243
Query: 114 SLLTTKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSC 173
+ + + + A+G G +Y GGYDG + L S+E YDP T WS
Sbjct: 244 TFVAPMKHRRS----------ALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293
Query: 174 PAMTTRRRYCRIAV 187
MT+ R +AV
Sbjct: 294 TRMTSGRSGVGVAV 307
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 103/193 (53%)
Query: 136 IGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYAL 195
IG DG +YA GG G SS+ERY+P W M TRR +AV+ LYA+
Sbjct: 109 IGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAV 168
Query: 196 GGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGE 255
GGFD TN S E P +W + M++ RS GV L IY GG DG ++S E
Sbjct: 169 GGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVE 228
Query: 256 RFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315
R++V +W +APM RS + +G + +GG DG + L+SVE YDP + W +T
Sbjct: 229 RYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVT 288
Query: 316 PMLTRRSSIGAAV 328
M + RS +G AV
Sbjct: 289 RMTSGRSGVGVAV 301
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 107/200 (53%), Gaps = 4/200 (2%)
Query: 135 AIGTCSFDGLLYACGGY----DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN 190
+ C GLLYA GG DG + S+++ Y+P+T WS C +M+ R + V++
Sbjct: 57 GLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDG 116
Query: 191 CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMC 250
+YA+GG + +SVER +P +W V M +RR GVA L+ +Y VGG DGT
Sbjct: 117 HIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR 176
Query: 251 MSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNK 310
++S E + RN W I PM + RS V + + GG DG LNSVE+YD +
Sbjct: 177 LNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 236
Query: 311 WQLLTPMLTRRSSIGAAVLE 330
W + PM RS++G V +
Sbjct: 237 WTFVAPMRHHRSALGITVHQ 256
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 103/192 (53%), Gaps = 5/192 (2%)
Query: 144 LLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGF----D 199
L+Y GGY S LS +E Y+P G W + R VV LYA+GG D
Sbjct: 20 LIYTAGGYFRQS-LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 78
Query: 200 STNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNV 259
++++ +P +W+P SMS R+ GV +DG IY VGG+ G + SS ER+
Sbjct: 79 GNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEP 138
Query: 260 RRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLT 319
R+ W +APML+RR V + L +GG DG++ LNS E Y P+ N+W+++TPM T
Sbjct: 139 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNT 198
Query: 320 RRSSIGAAVLET 331
RS G VL
Sbjct: 199 IRSGAGVCVLHN 210
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 72/147 (48%)
Query: 129 MLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV 188
ML +G + LLYA GG+DG + L+S E Y P W M T R + V+
Sbjct: 149 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVL 208
Query: 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGT 248
NC+YA GG+D + SVER D W V M RS+ G+ G IY +GG DG
Sbjct: 209 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGH 268
Query: 249 MCMSSGERFNVRRNSWEPIAPMLSRRS 275
+ S E ++ ++W + M S RS
Sbjct: 269 TFLDSVECYDPDSDTWSEVTRMTSGRS 295
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 183 CRIAVVENCLYALGGF--DSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIY 240
CR V +Y GG+ S +Y +E +P G W + + RS + G +Y
Sbjct: 12 CRAPKVGRLIYTAGGYFRQSLSY---LEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLY 68
Query: 241 CVGGN----DGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSS 296
VGG DG S+ + +N N W P A M R+ V I+G++ +GG+ G
Sbjct: 69 AVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCI 128
Query: 297 SLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLETL 332
+SVE+Y+P+ ++W L+ PMLTRR +G AVL L
Sbjct: 129 HHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRL 164
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 47/195 (24%)
Query: 3 IAPMLYRRSRSGVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSV 62
+APML RR GVA L ++LY VGGF G +NS+ Y W +
Sbjct: 146 VAPMLTRRIGVGVAVLNRLLYAVGGFD------------GTNRLNSAECYYPERNEWRMI 193
Query: 63 ALQLLRHVKLPLLARDFLMNSVESESLIKESTEC---------QELLLEAMKYHLLPEQR 113
MN++ S + + C Q+ L +Y + E
Sbjct: 194 TP----------------MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 237
Query: 114 SLLTTKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSC 173
+ + R A+G G +Y GGYDG + L S+E YDP + WS
Sbjct: 238 TFVAPMRHHRS----------ALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV 287
Query: 174 PAMTTRRRYCRIAVV 188
MT+ R +AV
Sbjct: 288 TRMTSGRSGVGVAVT 302
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 103/193 (53%)
Query: 136 IGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYAL 195
IG DG +YA GG G SS+ERY+P W M TRR +AV+ LYA+
Sbjct: 108 IGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAV 167
Query: 196 GGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGE 255
GGFD TN S E P +W + M++ RS GV L IY GG DG ++S E
Sbjct: 168 GGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVE 227
Query: 256 RFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315
R++V +W +APM RS + +G + +GG DG + L+SVE YDP + W +T
Sbjct: 228 RYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVT 287
Query: 316 PMLTRRSSIGAAV 328
M + RS +G AV
Sbjct: 288 RMTSGRSGVGVAV 300
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 107/200 (53%), Gaps = 4/200 (2%)
Query: 135 AIGTCSFDGLLYACGGY----DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN 190
+ C GLLYA GG DG + S+++ Y+P+T WS C +M+ R + V++
Sbjct: 56 GLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDG 115
Query: 191 CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMC 250
+YA+GG + +SVER +P +W V M +RR GVA L+ +Y VGG DGT
Sbjct: 116 HIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR 175
Query: 251 MSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNK 310
++S E + RN W I PM + RS V + + GG DG LNSVE+YD +
Sbjct: 176 LNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 235
Query: 311 WQLLTPMLTRRSSIGAAVLE 330
W + PM RS++G V +
Sbjct: 236 WTFVAPMRHHRSALGITVHQ 255
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 103/192 (53%), Gaps = 5/192 (2%)
Query: 144 LLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGF----D 199
L+Y GGY S LS +E Y+P G W + R VV LYA+GG D
Sbjct: 19 LIYTAGGYFRQS-LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 77
Query: 200 STNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNV 259
++++ +P +W+P SMS R+ GV +DG IY VGG+ G + SS ER+
Sbjct: 78 GNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEP 137
Query: 260 RRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLT 319
R+ W +APML+RR V + L +GG DG++ LNS E Y P+ N+W+++TPM T
Sbjct: 138 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNT 197
Query: 320 RRSSIGAAVLET 331
RS G VL
Sbjct: 198 IRSGAGVCVLHN 209
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 72/147 (48%)
Query: 129 MLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV 188
ML +G + LLYA GG+DG + L+S E Y P W M T R + V+
Sbjct: 148 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVL 207
Query: 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGT 248
NC+YA GG+D + SVER D W V M RS+ G+ G IY +GG DG
Sbjct: 208 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGH 267
Query: 249 MCMSSGERFNVRRNSWEPIAPMLSRRS 275
+ S E ++ ++W + M S RS
Sbjct: 268 TFLDSVECYDPDSDTWSEVTRMTSGRS 294
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 183 CRIAVVENCLYALGGF--DSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIY 240
CR V +Y GG+ S +Y +E +P G W + + RS + G +Y
Sbjct: 11 CRAPKVGRLIYTAGGYFRQSLSY---LEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLY 67
Query: 241 CVGGN----DGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSS 296
VGG DG S+ + +N N W P A M R+ V I+G++ +GG+ G
Sbjct: 68 AVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCI 127
Query: 297 SLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLETL 332
+SVE+Y+P+ ++W L+ PMLTRR +G AVL L
Sbjct: 128 HHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRL 163
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 47/195 (24%)
Query: 3 IAPMLYRRSRSGVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSV 62
+APML RR GVA L ++LY VGGF G +NS+ Y W +
Sbjct: 145 VAPMLTRRIGVGVAVLNRLLYAVGGFD------------GTNRLNSAECYYPERNEWRMI 192
Query: 63 ALQLLRHVKLPLLARDFLMNSVESESLIKESTEC---------QELLLEAMKYHLLPEQR 113
MN++ S + + C Q+ L +Y + E
Sbjct: 193 TP----------------MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 236
Query: 114 SLLTTKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSC 173
+ + R A+G G +Y GGYDG + L S+E YDP + WS
Sbjct: 237 TFVAPMRHHRS----------ALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV 286
Query: 174 PAMTTRRRYCRIAVV 188
MT+ R +AV
Sbjct: 287 TRMTSGRSGVGVAVT 301
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 115/206 (55%), Gaps = 8/206 (3%)
Query: 136 IGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYAL 195
+G +GLLYA GG+DG++ LSS+E Y+ + W M TRR + VV LYA+
Sbjct: 102 LGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAV 161
Query: 196 GGFDSTNYQ--ASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSS 253
GG+D + Q ++VE + +W + MS+RRS GV L+ +Y VGG+DG + S
Sbjct: 162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKS 221
Query: 254 GERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQL 313
E ++ N+W +A M R V + G L +GG+DGS +L SVE Y+P +KW +
Sbjct: 222 VEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281
Query: 314 LTP-MLTRRSSIGAAVLETLNIEKRL 338
++ M T RS G V I+KRL
Sbjct: 282 VSSCMSTGRSYAGVTV-----IDKRL 302
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 2/192 (1%)
Query: 143 GLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTN 202
GL++A GG++G+ + +++ YDP+ W+S M RR AV+ LYA+GGFD +
Sbjct: 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST 121
Query: 203 YQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGND--GTMCMSSGERFNVR 260
+SVE + + +W V M++RRSS GV + G +Y VGG D C+S+ E +N
Sbjct: 122 GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNAT 181
Query: 261 RNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTR 320
N W IA M +RRS V + L +GG+DG SVE YDP N W+ + M
Sbjct: 182 TNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC 241
Query: 321 RSSIGAAVLETL 332
R + G + L
Sbjct: 242 RRNAGVCAVNGL 253
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 104/193 (53%), Gaps = 7/193 (3%)
Query: 144 LLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV--ENCLYALGGFDST 201
L+ GG + S+E YD W + +RR CR +V ++A+GGF+ +
Sbjct: 17 LMVVVGG-QAPKAIRSVECYDFKEERWHQVAELPSRR--CRAGMVYMAGLVFAVGGFNGS 73
Query: 202 NYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRR 261
+V+ DP +W V +M RRS+ G A L+G +Y VGG DG+ +SS E +N++
Sbjct: 74 LRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKS 133
Query: 262 NSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSS--LNSVEKYDPKLNKWQLLTPMLT 319
N W +APM +RRS+ V + G L +GG D +S L++VE Y+ N+W + M T
Sbjct: 134 NEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST 193
Query: 320 RRSSIGAAVLETL 332
RRS G VL L
Sbjct: 194 RRSGAGVGVLNNL 206
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 35/284 (12%)
Query: 3 IAPMLYRRSRSGVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYI-LPTAWVS 61
+A + RR R+G+ + +++ VGGF L V + +Y + W S
Sbjct: 45 VAELPSRRCRAGMVYMAGLVFAVGGFNGSLRV-------------RTVDSYDPVKDQWTS 91
Query: 62 VALQLLRHVKLPLLARDFLMNSVESESLIKESTECQELLLEAMK-YHLLPEQRSLLTTKR 120
VA R L + L+ +V + + +++ + +H+ P + T+R
Sbjct: 92 VANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP-----MNTRR 146
Query: 121 TQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGAS--CLSSMERYDPLTGVWSSCPAMTT 178
+ LLYA GGYD AS CLS++E Y+ T W+ M+T
Sbjct: 147 SSVGVGVVGG-------------LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST 193
Query: 179 RRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGA 238
RR + V+ N LYA+GG D + SVE DP W V M+ R + GV A++G
Sbjct: 194 RRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGL 253
Query: 239 IYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI 282
+Y VGG+DG+ ++S E +N + W ++ +S ++ V +
Sbjct: 254 LYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTV 297
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 101/193 (52%)
Query: 136 IGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYAL 195
IG DG +YA GG G +S+ERY+P W TRR +AV+ LYA+
Sbjct: 115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAV 174
Query: 196 GGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGE 255
GGFD TN S E P +W + + ++ RS GV L IY GG DG ++S E
Sbjct: 175 GGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVE 234
Query: 256 RFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315
R++V +W +AP RRS + +G + +GG DG + L+SVE YDP + W +T
Sbjct: 235 RYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT 294
Query: 316 PMLTRRSSIGAAV 328
+ RS +G AV
Sbjct: 295 RXTSGRSGVGVAV 307
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 99/196 (50%), Gaps = 4/196 (2%)
Query: 139 CSFDGLLYACGGY----DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYA 194
C GLLYA GG DG + S+++ Y+P T WS C + R + V++ +YA
Sbjct: 67 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYA 126
Query: 195 LGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSG 254
+GG + SVER +P +W V +RR GVA L+ +Y VGG DGT ++S
Sbjct: 127 VGGSHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSA 186
Query: 255 ERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLL 314
E + RN W I + RS V + + GG DG LNSVE+YD + W +
Sbjct: 187 ECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246
Query: 315 TPMLTRRSSIGAAVLE 330
P RRS++G V +
Sbjct: 247 APXKHRRSALGITVHQ 262
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 97/192 (50%), Gaps = 5/192 (2%)
Query: 144 LLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGF----D 199
L+Y GGY S LS +E Y+P G W + R VV LYA+GG D
Sbjct: 26 LIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 200 STNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNV 259
++++ +P +W+P S R+ GV +DG IY VGG+ G + +S ER+
Sbjct: 85 GNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEP 144
Query: 260 RRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLT 319
R+ W +AP L+RR V + L +GG DG++ LNS E Y P+ N+W+ +T T
Sbjct: 145 ERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNT 204
Query: 320 RRSSIGAAVLET 331
RS G VL
Sbjct: 205 IRSGAGVCVLHN 216
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 192 LYALGGF--DSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGN---- 245
+Y GG+ S +Y +E +P G W + + RS + G +Y VGG
Sbjct: 27 IYTAGGYFRQSLSY---LEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSP 83
Query: 246 DGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYD 305
DG S+ + +N N W P AP R+ V I+G++ +GG+ G NSVE+Y+
Sbjct: 84 DGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYE 143
Query: 306 PKLNKWQLLTPMLTRRSSIGAAVLETL 332
P+ ++W L+ P LTRR +G AVL L
Sbjct: 144 PERDEWHLVAPXLTRRIGVGVAVLNRL 170
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 74/187 (39%), Gaps = 31/187 (16%)
Query: 3 IAPMLYRRSRSGVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSV 62
+AP L RR GVA L ++LY VGGF G +NS+ Y W +
Sbjct: 152 VAPXLTRRIGVGVAVLNRLLYAVGGFD------------GTNRLNSAECYYPERNEWRXI 199
Query: 63 -ALQLLRHVKLPLLARDFLMNSVESESLIKESTECQELLLEAMKYHLLPEQRSLLTTKRT 121
A +R + L N + + + Q+ L +Y + E + + +
Sbjct: 200 TAXNTIRSGAGVCV----LHNCIYAAG----GYDGQDQLNSVERYDVETETWTFVAPXKH 251
Query: 122 QERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRR 181
+ A+G G +Y GGYDG + L S+E YDP T WS T+ R
Sbjct: 252 RRS----------ALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRXTSGRS 301
Query: 182 YCRIAVV 188
+AV
Sbjct: 302 GVGVAVT 308
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 6/197 (3%)
Query: 141 FDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDS 200
+D ++Y GG + M+ Y+ + W S T R E +Y GG +
Sbjct: 54 WDNVVYILGGSQLFP-IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEV 112
Query: 201 TNYQASV-ERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGT----MCMSSGE 255
N + E D R W PSM ++R S G+ +G IY GG+ G ++S E
Sbjct: 113 GNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCE 172
Query: 256 RFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315
++ +W + PM+ R H +V ++ + +GG +G L++VE YD KLN+W++++
Sbjct: 173 VYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS 232
Query: 316 PMLTRRSSIGAAVLETL 332
PM + ++ A + ++
Sbjct: 233 PMPWKGVTVKCAAVGSI 249
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Query: 135 AIGTCSFDGLLYACGGYD-GASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVE--NC 191
++ C+ +G +Y GG + G S L E YD T W + P+M T+R C +VE
Sbjct: 94 SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR--CSHGMVEANGL 151
Query: 192 LYALGGFDSTNYQASV----ERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDG 247
+Y GG N V E DP W + M R + G+ + I+ VGG +G
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG 211
Query: 248 TMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPK 307
+ + E ++++ N W+ ++PM + T + + + + G G L + +Y+ +
Sbjct: 212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTE 271
Query: 308 LNKW 311
+KW
Sbjct: 272 TDKW 275
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 162 RYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERL---DPRMGKWA 218
+ D ++ W P + + R + V++ +Y + G D +AS++ + DP KW+
Sbjct: 82 QLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKD-LQTEASLDSVLCYDPVAAKWS 140
Query: 219 PVPSMSSRRSSCGVAALDGAIYCVGGN-DGTMCMSSGERFNVRRNSWEPIAPMLSRRSTH 277
V ++ + V + +G IYC+GG D C + +N ++ W+ +APM + RS
Sbjct: 141 EVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF 200
Query: 278 EVVNIEGYLLTMGG--NDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSI 324
V +G ++ GG DG S+ SVE +D K NKW+++T RSSI
Sbjct: 201 GVAIHKGKIVIAGGVTEDGLSA--SVEAFDLKTNKWEVMTEFPQERSSI 247
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 19/216 (8%)
Query: 136 IGTCSFDGLLYACGGYD--GASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLY 193
G D +Y G D + L S+ YDP+ WS + + + +Y
Sbjct: 103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIY 162
Query: 194 ALGGFDSTNYQASVERL---DPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMC 250
LGG T+ + R+ +P+ G W + M + RS GVA G I GG
Sbjct: 163 CLGG--KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGL 220
Query: 251 MSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGG---------NDGSSSLNSV 301
+S E F+++ N WE + RS+ +V++ G L +GG + +N +
Sbjct: 221 SASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDI 280
Query: 302 EKYDPKLNKWQLLTPMLTRRSSIGAAVLET-LNIEK 336
KY+ +W + + R + GA+ L T LN+ K
Sbjct: 281 WKYEDDKKEWAGMLKEI--RYASGASCLATRLNLFK 314
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 10/176 (5%)
Query: 163 YDPLTG-VWSSCPAMTTRRRYCRIAVVENCLYALGGF--DSTN----YQASVERLDPRMG 215
YDP+ + + A R + I +N +Y +GG D N Q+ +LD
Sbjct: 29 YDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS 88
Query: 216 KWAPVPSMSSRRSSCGVAALDGAIYCVGGND--GTMCMSSGERFNVRRNSWEPIAPMLSR 273
+W +P + S R G+ +D IY V G D + S ++ W + + +
Sbjct: 89 EWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK 148
Query: 274 RSTHEVVNIEGYLLTMGGN-DGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAV 328
H V++ G + +GG D N V Y+PK W+ L PM T RS G A+
Sbjct: 149 VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI 204
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 133 VFAIGTCSFDGLLYACGGY-DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENC 191
V+ S +G++Y GG D C + + Y+P G W M T R +A+ +
Sbjct: 149 VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGK 208
Query: 192 LYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGG 244
+ GG ASVE D + KW + RSS + +L G++Y +GG
Sbjct: 209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGG 261
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 145 LYACGG---YDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDST 201
+Y GG DG CL S+ YD L+ W + + + +Y +GG S
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160
Query: 202 NYQASVERL---DPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFN 258
+ + ++ DP+ +W + M + RS G DG I G T SS E ++
Sbjct: 161 --RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYS 218
Query: 259 VRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGG------NDGS---SSLNSVEKYDPKLN 309
+ N W P RS+ +V++ G L +GG G + LN + +Y+ +
Sbjct: 219 ITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278
Query: 310 KWQ 312
KW+
Sbjct: 279 KWE 281
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 58/150 (38%), Gaps = 13/150 (8%)
Query: 130 LPYV-FAIGTCSFDGLLYACGGY-DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAV 187
LPYV + S L+Y GG CL+ M YDP W M T R V
Sbjct: 135 LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV 194
Query: 188 VENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDG 247
+ + G T +S E KWAP + RSS + +L G +Y +GG
Sbjct: 195 HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGF-A 253
Query: 248 TMCMSSGE----------RFNVRRNSWEPI 267
T+ SGE R+N WE +
Sbjct: 254 TLETESGELVPTELNDIWRYNEEEKKWEGV 283
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 10/170 (5%)
Query: 162 RYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVE------RLDPRMG 215
++D L W P + + R + N +Y +GG + + + ++ RL + G
Sbjct: 71 QFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130
Query: 216 KWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGT-MCMSSGERFNVRRNSWEPIAPMLSRR 274
+ P+P + + L +Y +GG C++ ++ ++ W+ +APM + R
Sbjct: 131 ESDPLPYVVYGHTVLSHMDL---VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR 187
Query: 275 STHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSI 324
S +G ++ G + +S E Y NKW RSS+
Sbjct: 188 SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237
>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3F2R|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3G15|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
pdb|3G15|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
Length = 401
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 23 YVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSVALQLLRHVK--LPLLARDFL 80
+ +G +C+ + Y Y Y P ++ Y PT Q L + LP DF
Sbjct: 285 FDIGNHFCEWMYDYSYEKY--PFFRANIRKY--PTK-----KQQLHFISSYLPAFQNDFE 335
Query: 81 MNSVESESLIKESTECQELLLEAMKYHL 108
S E +S+IKE E+LLE ++ L
Sbjct: 336 NLSTEEKSIIKE-----EMLLEVNRFAL 358
>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A
Length = 402
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 23 YVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSVALQLLRHVK--LPLLARDFL 80
+ +G +C+ + Y Y Y P ++ Y PT Q L + LP DF
Sbjct: 286 FDIGNHFCEWMYDYSYEKY--PFFRANIRKY--PTK-----KQQLHFISSYLPAFQNDFE 336
Query: 81 MNSVESESLIKESTECQELLLEAMKYHL 108
S E +S+IKE E+LLE ++ L
Sbjct: 337 NLSTEEKSIIKE-----EMLLEVNRFAL 359
>pdb|3ZM9|A Chain A, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
pdb|3ZM9|B Chain B, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
Length = 383
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 23 YVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSVALQLLRHVK--LPLLARDFL 80
+ +G +C+ + Y Y Y P ++ Y PT Q L + LP DF
Sbjct: 267 FDIGNHFCEWMYDYSYEKY--PFFRANIRKY--PTK-----KQQLHFISSYLPAFQNDFE 317
Query: 81 MNSVESESLIKESTECQELLLEAMKYHL 108
S E +S+IKE E+LLE ++ L
Sbjct: 318 NLSTEEKSIIKE-----EMLLEVNRFAL 340
>pdb|2CKO|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKO|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKP|A Chain A, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKP|B Chain B, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKQ|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
pdb|2CKQ|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
Length = 390
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 23 YVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSVALQLLRHVK--LPLLARDFL 80
+ +G +C+ + Y Y Y P ++ Y PT Q L + LP DF
Sbjct: 274 FDIGNHFCEWMYDYSYEKY--PFFRANIRKY--PTK-----KQQLHFISSYLPAFQNDFE 324
Query: 81 MNSVESESLIKESTECQELLLEAMKYHL 108
S E +S+IKE E+LLE ++ L
Sbjct: 325 NLSTEEKSIIKE-----EMLLEVNRFAL 347
>pdb|3SDS|A Chain A, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|B Chain B, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|C Chain C, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
Length = 353
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 263 SWEPIAPMLSRRSTHEVVNIEGYLLTMGGN 292
S + +A M S+RST V+ EG ++ MGG+
Sbjct: 65 SGKTVAMMFSKRSTRTRVSTEGAVVKMGGH 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,157,724
Number of Sequences: 62578
Number of extensions: 405491
Number of successful extensions: 1046
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 87
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)