Query psy11771
Match_columns 347
No_of_seqs 224 out of 2430
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 18:32:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 9.2E-53 2E-57 401.4 30.2 289 43-331 191-523 (571)
2 PHA02713 hypothetical protein; 100.0 4E-49 8.7E-54 377.9 29.3 300 31-331 160-513 (557)
3 KOG4441|consensus 100.0 2.4E-44 5.1E-49 343.6 23.1 254 2-330 315-569 (571)
4 PHA03098 kelch-like protein; P 100.0 2E-42 4.3E-47 333.8 32.5 287 43-330 162-487 (534)
5 PHA02790 Kelch-like protein; P 100.0 2E-40 4.3E-45 313.7 32.6 264 40-331 171-447 (480)
6 PLN02153 epithiospecifier prot 100.0 9.7E-40 2.1E-44 297.6 25.7 206 135-343 78-322 (341)
7 PHA02713 hypothetical protein; 100.0 2.9E-40 6.4E-45 316.8 21.9 238 2-317 286-543 (557)
8 PLN02193 nitrile-specifier pro 100.0 1.2E-38 2.5E-43 300.9 26.7 191 135-326 221-435 (470)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 1.5E-37 3.2E-42 284.1 24.4 197 135-331 56-322 (346)
10 TIGR03548 mutarot_permut cycli 100.0 6.4E-37 1.4E-41 277.1 25.8 211 135-346 65-319 (323)
11 PHA03098 kelch-like protein; P 100.0 7E-36 1.5E-40 288.3 26.7 190 134-323 334-527 (534)
12 PRK14131 N-acetylneuraminic ac 100.0 1.9E-35 4.2E-40 272.3 23.1 197 135-331 77-344 (376)
13 PHA02790 Kelch-like protein; P 100.0 8.7E-35 1.9E-39 275.2 21.9 167 135-314 311-477 (480)
14 KOG4693|consensus 100.0 2.3E-34 4.9E-39 237.0 16.7 200 132-331 78-303 (392)
15 PLN02153 epithiospecifier prot 100.0 6.4E-33 1.4E-37 252.7 27.8 204 135-343 25-259 (341)
16 PLN02193 nitrile-specifier pro 100.0 5.8E-32 1.3E-36 255.4 28.9 206 132-343 165-385 (470)
17 PRK14131 N-acetylneuraminic ac 100.0 1.7E-32 3.6E-37 252.8 20.5 243 2-313 66-374 (376)
18 TIGR03548 mutarot_permut cycli 100.0 8E-31 1.7E-35 237.3 25.6 184 134-318 5-205 (323)
19 TIGR03547 muta_rot_YjhT mutatr 100.0 1.8E-30 3.8E-35 237.4 25.1 182 136-321 11-241 (346)
20 KOG4693|consensus 100.0 7.8E-31 1.7E-35 216.2 13.4 170 124-293 121-312 (392)
21 KOG0379|consensus 100.0 8.7E-29 1.9E-33 233.3 21.5 202 132-333 112-331 (482)
22 KOG0379|consensus 100.0 1.4E-26 3.1E-31 218.3 22.9 200 132-331 60-276 (482)
23 KOG4152|consensus 99.9 2.4E-25 5.3E-30 198.5 16.5 253 4-331 27-333 (830)
24 KOG1230|consensus 99.9 3.1E-24 6.7E-29 187.0 16.8 203 104-314 101-347 (521)
25 KOG1230|consensus 99.9 2.2E-22 4.7E-27 175.6 21.4 192 141-332 77-308 (521)
26 KOG4152|consensus 99.9 6.6E-20 1.4E-24 164.0 19.2 163 131-294 135-343 (830)
27 COG3055 Uncharacterized protei 99.7 8.3E-15 1.8E-19 126.8 17.2 196 137-334 87-353 (381)
28 COG3055 Uncharacterized protei 99.6 2.8E-14 6E-19 123.6 14.5 182 137-322 41-270 (381)
29 KOG2437|consensus 99.4 1.4E-13 3E-18 123.6 6.5 177 133-309 261-473 (723)
30 PF13964 Kelch_6: Kelch motif 99.4 8E-13 1.7E-17 84.7 6.4 49 273-321 1-50 (50)
31 PF13964 Kelch_6: Kelch motif 99.3 5E-12 1.1E-16 80.9 6.5 49 226-274 1-50 (50)
32 PF01344 Kelch_1: Kelch motif; 99.2 3E-11 6.6E-16 76.3 5.2 46 273-318 1-47 (47)
33 PF13415 Kelch_3: Galactose ox 99.1 1.1E-10 2.4E-15 74.2 5.7 47 283-329 1-49 (49)
34 PF01344 Kelch_1: Kelch motif; 99.1 8.9E-11 1.9E-15 74.1 4.6 46 226-271 1-47 (47)
35 KOG2437|consensus 99.1 1.2E-10 2.6E-15 105.0 5.7 140 177-316 258-421 (723)
36 PF13415 Kelch_3: Galactose ox 99.0 7E-10 1.5E-14 70.5 6.3 47 236-282 1-49 (49)
37 PF07646 Kelch_2: Kelch motif; 99.0 7.5E-10 1.6E-14 70.4 6.3 46 273-318 1-49 (49)
38 smart00612 Kelch Kelch domain. 99.0 4.7E-10 1E-14 70.7 5.1 47 285-331 1-47 (47)
39 PF13418 Kelch_4: Galactose ox 99.0 5.8E-10 1.2E-14 71.0 4.1 47 273-319 1-49 (49)
40 PF07646 Kelch_2: Kelch motif; 99.0 2.7E-09 5.8E-14 67.8 6.6 46 226-271 1-49 (49)
41 smart00612 Kelch Kelch domain. 98.9 1.7E-09 3.6E-14 68.1 5.2 47 238-284 1-47 (47)
42 PF13418 Kelch_4: Galactose ox 98.9 3.3E-09 7.1E-14 67.4 4.8 47 226-272 1-49 (49)
43 PF07250 Glyoxal_oxid_N: Glyox 98.7 6.2E-07 1.3E-11 76.5 14.6 148 160-320 48-211 (243)
44 PLN02772 guanylate kinase 98.7 1.7E-07 3.6E-12 84.9 11.2 83 224-308 22-109 (398)
45 PLN02772 guanylate kinase 98.6 3E-07 6.6E-12 83.2 11.2 83 177-261 22-109 (398)
46 TIGR01640 F_box_assoc_1 F-box 98.5 2.1E-05 4.6E-10 67.6 19.8 159 158-317 14-187 (230)
47 PF13854 Kelch_5: Kelch motif 98.5 2.2E-07 4.7E-12 56.7 5.3 40 270-309 1-42 (42)
48 PF13854 Kelch_5: Kelch motif 98.5 5.1E-07 1.1E-11 55.1 5.5 39 223-261 1-41 (42)
49 TIGR01640 F_box_assoc_1 F-box 98.1 0.00032 6.9E-09 60.3 17.6 147 158-309 70-230 (230)
50 PF07707 BACK: BTB And C-termi 97.9 4.4E-06 9.6E-11 62.0 0.9 42 43-84 53-102 (103)
51 PF07893 DUF1668: Protein of u 97.8 0.0013 2.8E-08 60.0 16.8 118 188-316 75-216 (342)
52 PF03089 RAG2: Recombination a 97.8 0.0047 1E-07 53.0 17.7 150 145-294 41-230 (337)
53 PF07893 DUF1668: Protein of u 97.7 0.0025 5.5E-08 58.1 17.0 118 141-269 75-216 (342)
54 PF07250 Glyoxal_oxid_N: Glyox 97.7 0.00033 7.2E-09 59.9 10.5 87 205-293 46-138 (243)
55 smart00875 BACK BTB And C-term 97.4 0.00016 3.4E-09 53.2 3.5 43 40-82 48-99 (101)
56 PRK11138 outer membrane biogen 97.2 0.061 1.3E-06 50.2 19.0 150 137-313 64-231 (394)
57 cd00094 HX Hemopexin-like repe 97.1 0.094 2E-06 43.7 17.4 143 137-310 11-178 (194)
58 PRK11138 outer membrane biogen 97.1 0.082 1.8E-06 49.3 18.9 150 137-313 115-282 (394)
59 PF12768 Rax2: Cortical protei 96.9 0.024 5.2E-07 49.9 12.8 119 193-316 2-130 (281)
60 PF13360 PQQ_2: PQQ-like domai 96.9 0.24 5.2E-06 42.3 21.1 150 138-314 32-200 (238)
61 PF12768 Rax2: Cortical protei 96.8 0.032 7E-07 49.1 12.8 108 157-269 15-130 (281)
62 PF08450 SGL: SMP-30/Gluconola 96.7 0.15 3.2E-06 44.1 16.5 175 141-340 50-242 (246)
63 PF13360 PQQ_2: PQQ-like domai 96.7 0.35 7.6E-06 41.3 19.0 136 158-316 3-151 (238)
64 PF03089 RAG2: Recombination a 96.5 0.23 4.9E-06 43.0 15.0 103 191-293 39-174 (337)
65 TIGR03300 assembly_YfgL outer 96.4 0.54 1.2E-05 43.5 19.0 147 137-313 60-216 (377)
66 TIGR03300 assembly_YfgL outer 96.1 0.75 1.6E-05 42.5 18.3 125 140-291 239-369 (377)
67 PF05096 Glu_cyclase_2: Glutam 96.1 0.15 3.3E-06 44.1 12.2 110 184-309 49-159 (264)
68 PF05096 Glu_cyclase_2: Glutam 96.1 0.15 3.2E-06 44.1 12.0 161 134-316 46-215 (264)
69 TIGR03866 PQQ_ABC_repeats PQQ- 95.9 0.74 1.6E-05 40.4 16.6 100 144-263 2-106 (300)
70 PF08450 SGL: SMP-30/Gluconola 95.8 0.91 2E-05 39.2 16.4 143 142-309 11-166 (246)
71 TIGR02800 propeller_TolB tol-p 95.7 1.9 4E-05 40.4 19.2 146 158-315 214-362 (417)
72 PF03178 CPSF_A: CPSF A subuni 95.5 0.84 1.8E-05 41.2 15.6 148 132-290 25-190 (321)
73 PF03178 CPSF_A: CPSF A subuni 95.5 0.68 1.5E-05 41.8 14.8 129 190-329 42-181 (321)
74 KOG2055|consensus 95.5 0.68 1.5E-05 42.7 14.1 148 142-310 224-377 (514)
75 PRK04792 tolB translocation pr 95.4 2.5 5.4E-05 40.2 19.1 148 158-315 242-390 (448)
76 PRK00178 tolB translocation pr 95.3 2.7 5.8E-05 39.7 19.9 148 158-316 223-372 (430)
77 PF02191 OLF: Olfactomedin-lik 95.0 2.2 4.7E-05 37.1 17.6 175 142-330 30-227 (250)
78 PF08268 FBA_3: F-box associat 94.7 0.92 2E-05 34.9 11.5 82 233-315 2-88 (129)
79 cd00216 PQQ_DH Dehydrogenases 94.7 4.3 9.4E-05 39.1 19.6 118 137-267 56-192 (488)
80 smart00284 OLF Olfactomedin-li 94.7 2.6 5.6E-05 36.5 17.2 185 142-338 34-238 (255)
81 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.6 1.3 2.9E-05 43.0 14.7 118 184-313 64-197 (527)
82 PRK04922 tolB translocation pr 94.6 4.2 9.1E-05 38.5 19.2 147 158-316 228-377 (433)
83 KOG0310|consensus 94.2 1.1 2.3E-05 41.7 12.1 107 141-262 78-186 (487)
84 PF09910 DUF2139: Uncharacteri 94.0 4.1 8.8E-05 35.8 17.7 144 137-290 41-220 (339)
85 cd00094 HX Hemopexin-like repe 93.8 2.9 6.4E-05 34.7 13.5 98 143-263 63-178 (194)
86 PRK05137 tolB translocation pr 93.8 6.2 0.00014 37.3 18.8 148 158-315 226-374 (435)
87 PF08268 FBA_3: F-box associat 93.4 1.1 2.3E-05 34.5 9.5 81 187-268 3-88 (129)
88 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.3 3.3 7.2E-05 40.3 14.7 117 138-266 65-197 (527)
89 KOG0316|consensus 92.8 5.4 0.00012 33.9 13.5 147 142-311 28-177 (307)
90 PRK04043 tolB translocation pr 92.7 9.1 0.0002 36.1 19.0 148 158-316 213-366 (419)
91 KOG2055|consensus 92.1 4.4 9.5E-05 37.6 12.6 105 142-263 268-377 (514)
92 PRK03629 tolB translocation pr 91.8 12 0.00025 35.4 19.4 149 158-316 223-372 (429)
93 PF02191 OLF: Olfactomedin-lik 91.7 8.3 0.00018 33.5 15.5 145 137-290 73-237 (250)
94 PRK04792 tolB translocation pr 91.6 13 0.00028 35.4 18.9 148 157-315 197-346 (448)
95 COG4257 Vgb Streptogramin lyas 91.1 7.5 0.00016 33.9 12.3 128 185-331 195-326 (353)
96 PF09910 DUF2139: Uncharacteri 91.0 11 0.00023 33.4 14.7 131 171-311 26-185 (339)
97 PRK11028 6-phosphogluconolacto 90.9 12 0.00025 33.8 16.0 145 144-308 3-157 (330)
98 PRK00178 tolB translocation pr 90.8 15 0.00032 34.7 18.5 103 205-315 223-327 (430)
99 PLN03215 ascorbic acid mannose 90.7 14 0.00029 34.1 15.1 96 167-271 189-305 (373)
100 cd00200 WD40 WD40 domain, foun 90.3 10 0.00022 32.1 15.9 104 143-263 21-126 (289)
101 PRK13684 Ycf48-like protein; P 89.5 16 0.00035 33.2 16.4 125 164-308 200-332 (334)
102 cd00216 PQQ_DH Dehydrogenases 89.3 14 0.0003 35.6 14.4 117 184-313 56-191 (488)
103 KOG0278|consensus 89.1 11 0.00024 32.4 11.5 121 158-294 165-289 (334)
104 PTZ00421 coronin; Provisional 88.9 23 0.0005 34.2 20.2 153 143-314 138-297 (493)
105 KOG1898|consensus 88.8 25 0.00055 36.5 15.6 166 156-332 851-1031(1205)
106 KOG0310|consensus 88.7 21 0.00046 33.5 14.7 136 137-294 160-301 (487)
107 smart00284 OLF Olfactomedin-li 88.7 15 0.00033 31.8 15.5 146 135-290 76-242 (255)
108 KOG1332|consensus 87.9 7.6 0.00016 33.2 9.8 102 144-269 176-296 (299)
109 PLN00181 protein SPA1-RELATED; 87.9 35 0.00075 35.2 16.9 142 142-308 587-739 (793)
110 cd00200 WD40 WD40 domain, foun 87.8 16 0.00034 30.9 15.8 143 142-310 62-210 (289)
111 KOG4350|consensus 87.2 0.63 1.4E-05 42.3 3.3 48 46-93 204-256 (620)
112 PRK04922 tolB translocation pr 86.9 28 0.00061 32.9 17.7 104 205-315 228-332 (433)
113 PRK05137 tolB translocation pr 85.9 32 0.00068 32.5 18.2 148 157-315 181-330 (435)
114 KOG0289|consensus 85.7 30 0.00066 32.2 13.9 118 182-317 350-472 (506)
115 TIGR03866 PQQ_ABC_repeats PQQ- 85.6 23 0.0005 30.7 17.6 147 143-311 43-191 (300)
116 COG1520 FOG: WD40-like repeat 85.5 30 0.00064 31.9 17.5 153 138-313 64-225 (370)
117 TIGR03074 PQQ_membr_DH membran 85.2 48 0.001 34.0 18.3 33 137-175 189-223 (764)
118 TIGR02800 propeller_TolB tol-p 85.2 32 0.0007 32.0 18.2 103 205-315 214-318 (417)
119 PLN03215 ascorbic acid mannose 84.3 24 0.00052 32.6 12.1 96 214-318 189-305 (373)
120 PRK02889 tolB translocation pr 84.2 38 0.00082 32.0 19.4 147 158-315 220-368 (427)
121 KOG0289|consensus 83.1 40 0.00086 31.4 14.8 124 142-283 358-485 (506)
122 COG1520 FOG: WD40-like repeat 82.3 41 0.00089 31.0 16.5 110 141-267 110-226 (370)
123 PF14870 PSII_BNR: Photosynthe 82.0 38 0.00082 30.3 19.1 182 137-346 66-254 (302)
124 KOG0316|consensus 81.7 22 0.00048 30.3 9.8 93 158-262 81-175 (307)
125 KOG2321|consensus 81.7 16 0.00035 35.1 10.0 105 189-310 145-261 (703)
126 PF02897 Peptidase_S9_N: Proly 81.7 46 0.00099 31.1 17.1 149 157-315 251-412 (414)
127 KOG2321|consensus 79.6 11 0.00025 36.1 8.3 73 225-310 132-208 (703)
128 PLN02919 haloacid dehalogenase 79.0 97 0.0021 33.2 20.1 149 142-310 694-891 (1057)
129 KOG0291|consensus 78.7 76 0.0017 31.9 17.3 151 143-314 319-473 (893)
130 PLN00181 protein SPA1-RELATED; 78.7 85 0.0018 32.4 17.5 100 189-308 587-691 (793)
131 PRK11028 6-phosphogluconolacto 77.8 47 0.001 29.8 12.0 103 191-308 3-111 (330)
132 PRK01742 tolB translocation pr 75.8 72 0.0016 30.1 16.8 140 158-315 228-369 (429)
133 PRK13684 Ycf48-like protein; P 75.4 64 0.0014 29.3 19.4 149 141-315 98-252 (334)
134 KOG0296|consensus 74.8 67 0.0015 29.2 15.7 143 142-310 75-223 (399)
135 KOG1036|consensus 74.4 62 0.0014 28.7 13.6 131 158-309 35-165 (323)
136 KOG4378|consensus 73.3 87 0.0019 29.9 13.0 88 206-308 188-281 (673)
137 TIGR03074 PQQ_membr_DH membran 73.1 1.2E+02 0.0025 31.3 18.1 35 183-223 188-224 (764)
138 PF12217 End_beta_propel: Cata 73.1 63 0.0014 28.1 14.7 156 137-292 79-258 (367)
139 COG0823 TolB Periplasmic compo 72.3 83 0.0018 29.8 12.1 106 204-315 261-367 (425)
140 TIGR02658 TTQ_MADH_Hv methylam 71.2 85 0.0018 28.8 16.2 117 143-266 13-142 (352)
141 PF14870 PSII_BNR: Photosynthe 71.2 78 0.0017 28.4 15.4 152 141-316 113-270 (302)
142 PRK02889 tolB translocation pr 70.2 98 0.0021 29.2 17.0 147 158-315 176-324 (427)
143 PF10282 Lactonase: Lactonase, 70.1 87 0.0019 28.5 14.4 142 160-313 17-182 (345)
144 PF13088 BNR_2: BNR repeat-lik 69.4 75 0.0016 27.5 12.9 176 141-318 57-253 (275)
145 PF12217 End_beta_propel: Cata 68.6 80 0.0017 27.5 15.4 159 135-293 138-334 (367)
146 KOG1523|consensus 68.1 91 0.002 28.0 10.5 99 157-264 31-136 (361)
147 KOG0286|consensus 67.2 91 0.002 27.6 15.9 69 137-216 103-177 (343)
148 PRK03629 tolB translocation pr 66.4 1.2E+02 0.0026 28.7 19.0 145 157-314 178-326 (429)
149 PF13088 BNR_2: BNR repeat-lik 65.8 76 0.0016 27.5 10.1 149 138-288 114-275 (275)
150 PF10282 Lactonase: Lactonase, 65.8 1.1E+02 0.0023 27.9 16.6 161 136-316 147-333 (345)
151 PLN02919 haloacid dehalogenase 65.0 2E+02 0.0044 30.9 20.2 112 189-315 694-841 (1057)
152 KOG0318|consensus 64.0 70 0.0015 30.7 9.5 110 137-261 449-561 (603)
153 COG4257 Vgb Streptogramin lyas 64.0 1E+02 0.0023 27.2 11.4 115 139-268 196-313 (353)
154 PTZ00421 coronin; Provisional 63.9 1.5E+02 0.0031 28.8 18.5 105 142-263 87-201 (493)
155 KOG3637|consensus 63.4 2.1E+02 0.0046 30.6 14.8 165 180-345 211-408 (1030)
156 PRK04043 tolB translocation pr 63.3 1.4E+02 0.0029 28.2 18.4 147 158-314 257-407 (419)
157 PRK10115 protease 2; Provision 62.3 1.8E+02 0.004 29.5 19.8 148 158-316 247-403 (686)
158 PF13570 PQQ_3: PQQ-like domai 61.4 25 0.00053 20.4 4.3 26 230-261 15-40 (40)
159 PF02897 Peptidase_S9_N: Proly 61.0 1.4E+02 0.0031 27.7 18.0 98 204-307 251-357 (414)
160 PLN00033 photosystem II stabil 58.9 1.6E+02 0.0034 27.6 17.2 93 210-315 265-364 (398)
161 PF07734 FBA_1: F-box associat 56.5 1E+02 0.0022 24.6 9.0 82 233-315 2-91 (164)
162 KOG1036|consensus 55.5 1.5E+02 0.0033 26.4 14.5 108 137-263 59-166 (323)
163 KOG0266|consensus 53.3 2.1E+02 0.0045 27.3 16.3 93 158-264 225-322 (456)
164 PLN00033 photosystem II stabil 52.4 2E+02 0.0044 26.9 19.6 137 137-291 141-299 (398)
165 KOG2445|consensus 52.0 1.7E+02 0.0036 26.3 9.2 53 237-289 184-253 (361)
166 COG3823 Glutamine cyclotransfe 50.8 1.5E+02 0.0033 25.0 10.0 162 134-318 47-218 (262)
167 KOG1332|consensus 50.4 1.7E+02 0.0037 25.4 9.8 53 258-317 241-297 (299)
168 COG3823 Glutamine cyclotransfe 48.8 1.7E+02 0.0036 24.8 8.6 98 184-291 50-148 (262)
169 KOG0646|consensus 47.7 2.5E+02 0.0054 26.6 10.9 26 280-310 285-310 (476)
170 KOG0647|consensus 47.6 2.1E+02 0.0045 25.6 10.5 121 158-292 94-218 (347)
171 PF07707 BACK: BTB And C-termi 47.5 33 0.00071 24.6 4.0 54 48-101 12-67 (103)
172 KOG3545|consensus 47.1 1.9E+02 0.0041 25.0 14.4 182 142-338 30-232 (249)
173 PF14781 BBS2_N: Ciliary BBSom 46.7 1.4E+02 0.003 23.2 11.3 66 237-314 64-134 (136)
174 KOG0266|consensus 46.7 2.7E+02 0.0058 26.6 16.6 145 142-308 257-410 (456)
175 KOG0318|consensus 46.7 2.8E+02 0.0061 26.8 17.7 65 235-309 453-519 (603)
176 KOG0263|consensus 46.5 3.2E+02 0.007 27.5 11.3 104 187-307 543-649 (707)
177 PTZ00420 coronin; Provisional 46.4 3.1E+02 0.0066 27.2 18.3 102 191-308 139-249 (568)
178 KOG0281|consensus 46.3 1.1E+02 0.0024 27.8 7.4 95 185-294 325-420 (499)
179 KOG2048|consensus 45.4 3.2E+02 0.007 27.2 17.3 51 158-215 47-100 (691)
180 KOG2048|consensus 44.9 3.3E+02 0.0071 27.1 16.8 149 136-307 387-548 (691)
181 PTZ00420 coronin; Provisional 44.7 3.2E+02 0.007 27.0 20.0 151 143-314 138-300 (568)
182 KOG0639|consensus 43.6 3.1E+02 0.0067 26.5 12.2 94 189-294 476-573 (705)
183 PRK01742 tolB translocation pr 42.6 2.9E+02 0.0064 25.9 18.1 61 205-269 228-289 (429)
184 KOG1538|consensus 41.7 1E+02 0.0023 30.6 7.0 96 142-246 24-153 (1081)
185 COG0823 TolB Periplasmic compo 41.7 3.1E+02 0.0068 26.0 10.4 105 158-268 262-367 (425)
186 KOG0274|consensus 41.3 3.6E+02 0.0077 26.5 14.3 150 137-310 335-485 (537)
187 TIGR02658 TTQ_MADH_Hv methylam 41.1 2.9E+02 0.0063 25.4 11.1 69 188-263 258-333 (352)
188 PF14583 Pectate_lyase22: Olig 39.7 2.2E+02 0.0048 26.5 8.6 86 205-293 216-303 (386)
189 KOG0278|consensus 39.4 2.6E+02 0.0056 24.4 10.6 128 204-346 164-301 (334)
190 PF07734 FBA_1: F-box associat 38.1 2E+02 0.0044 22.8 14.7 128 186-315 2-147 (164)
191 KOG0268|consensus 36.7 2.4E+02 0.0051 26.0 8.0 136 158-317 210-353 (433)
192 PRK10115 protease 2; Provision 36.5 4.8E+02 0.01 26.5 17.4 106 204-315 246-354 (686)
193 PF06433 Me-amine-dh_H: Methyl 36.3 1.3E+02 0.0029 27.3 6.6 117 143-266 3-132 (342)
194 KOG3669|consensus 35.3 4.5E+02 0.0097 25.9 12.8 54 160-222 210-270 (705)
195 COG3386 Gluconolactonase [Carb 35.0 3.4E+02 0.0073 24.4 11.7 127 150-289 135-273 (307)
196 PF15525 DUF4652: Domain of un 34.8 2.6E+02 0.0057 23.1 10.1 69 251-320 87-161 (200)
197 KOG1523|consensus 34.8 2.6E+02 0.0056 25.3 7.8 99 204-311 31-136 (361)
198 KOG0649|consensus 34.2 3.1E+02 0.0068 23.8 12.3 110 169-291 100-225 (325)
199 smart00875 BACK BTB And C-term 34.0 1.3E+02 0.0027 21.1 5.3 46 48-93 12-58 (101)
200 PF14583 Pectate_lyase22: Olig 32.9 2.7E+02 0.0058 25.9 8.1 86 158-246 216-303 (386)
201 COG4447 Uncharacterized protei 32.6 3E+02 0.0065 24.5 7.7 115 135-268 47-164 (339)
202 KOG3545|consensus 32.6 3.3E+02 0.0072 23.6 11.8 145 137-290 72-236 (249)
203 PF08662 eIF2A: Eukaryotic tra 32.3 2.8E+02 0.0062 22.7 10.0 73 142-225 71-143 (194)
204 PF06433 Me-amine-dh_H: Methyl 32.1 1.5E+02 0.0032 27.1 6.2 69 189-264 249-324 (342)
205 KOG0282|consensus 30.4 2.6E+02 0.0055 26.7 7.4 62 236-310 269-333 (503)
206 COG4946 Uncharacterized protei 29.7 5.1E+02 0.011 24.9 18.1 153 157-315 106-303 (668)
207 KOG0281|consensus 28.4 4.7E+02 0.01 24.0 10.3 40 252-293 340-379 (499)
208 COG4880 Secreted protein conta 28.3 46 0.001 31.1 2.3 57 154-214 402-458 (603)
209 PF08950 DUF1861: Protein of u 27.9 4.1E+02 0.009 23.5 7.8 58 233-291 33-94 (298)
210 PF02239 Cytochrom_D1: Cytochr 27.7 3.2E+02 0.007 25.2 7.9 93 204-310 15-111 (369)
211 KOG0263|consensus 27.4 6.6E+02 0.014 25.4 10.8 109 137-261 540-650 (707)
212 KOG0308|consensus 27.2 4.9E+02 0.011 26.0 8.9 95 205-310 95-204 (735)
213 KOG0649|consensus 26.6 4.3E+02 0.0093 23.0 14.3 72 135-219 119-192 (325)
214 KOG0286|consensus 25.6 4.9E+02 0.011 23.3 14.2 110 134-260 190-303 (343)
215 KOG1446|consensus 24.8 5.1E+02 0.011 23.2 16.2 80 212-310 185-265 (311)
216 KOG1565|consensus 23.7 6.6E+02 0.014 24.2 9.8 96 188-307 343-452 (469)
217 KOG0308|consensus 23.2 4.4E+02 0.0095 26.3 7.8 71 135-215 122-203 (735)
218 KOG2314|consensus 22.8 7.4E+02 0.016 24.4 9.2 99 158-261 425-526 (698)
219 PF14781 BBS2_N: Ciliary BBSom 22.3 3.8E+02 0.0082 20.8 9.5 65 190-266 64-133 (136)
220 PF08950 DUF1861: Protein of u 22.2 5.5E+02 0.012 22.8 7.5 60 138-198 32-95 (298)
221 PF05262 Borrelia_P83: Borreli 22.0 7.3E+02 0.016 24.0 9.2 87 153-242 370-456 (489)
222 KOG2075|consensus 21.5 71 0.0015 30.3 2.3 47 48-94 281-344 (521)
223 PF08662 eIF2A: Eukaryotic tra 20.7 4.8E+02 0.01 21.4 12.9 90 189-291 71-162 (194)
No 1
>KOG4441|consensus
Probab=100.00 E-value=9.2e-53 Score=401.35 Aligned_cols=289 Identities=43% Similarity=0.762 Sum_probs=265.9
Q ss_pred CCccCChHHHHHHHHHHHHhc--------cccccccccCCCChHHHHHhcccccccccChhHHHHHHHHHHhccCccccc
Q psy11771 43 RPAVNSSCGNYILPTAWVSVA--------LQLLRHVKLPLLARDFLMNSVESESLIKESTECQELLLEAMKYHLLPEQRS 114 (347)
Q Consensus 43 ~~~v~~E~~v~~~~~~Wv~~~--------~~ll~~vr~~~l~~~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (347)
+++|.+|++||+++++|++|| ++++++|||+++++.+|.+.+...+++..+..|++++.++.+++..+.++.
T Consensus 191 ~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~ 270 (571)
T KOG4441|consen 191 DLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRP 270 (571)
T ss_pred CCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCc
Confidence 335999999999999999998 999999999999999999999999999999999999999999999888777
Q ss_pred ccccCccccccCC----------------------------------CCCCeEEEEEEEEECCEEEEEcccC-CCCCCCe
Q psy11771 115 LLTTKRTQERKPE----------------------------------GMLPYVFAIGTCSFDGLLYACGGYD-GASCLSS 159 (347)
Q Consensus 115 ~~~~~~~~~r~~~----------------------------------~~~~~~~~~~~~~~~~~lyv~GG~~-~~~~~~~ 159 (347)
.++..+.++|... .++..+..+++++++|+||++||.+ +...+++
T Consensus 271 ~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ 350 (571)
T KOG4441|consen 271 VMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSS 350 (571)
T ss_pred cccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccce
Confidence 6777777777410 0111122239999999999999999 7788899
Q ss_pred EEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEE
Q psy11771 160 MERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAI 239 (347)
Q Consensus 160 ~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i 239 (347)
+++||+.+++|.++++|+.+|..+++++++|.||++||.++....+++++|||.+++|+.+++|+..|..+++++++++|
T Consensus 351 ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 351 VERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL 430 (571)
T ss_pred EEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EEEcccCCCc-cCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCCC
Q psy11771 240 YCVGGNDGTM-CMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPML 318 (347)
Q Consensus 240 yv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 318 (347)
|++||.++.. .++++++|||.+++|+.+++|+.+|.++++++++++||++||.++.....++++|||++++|+.+++|+
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 9999987776 899999999999999999999999999999999999999999988667788999999999999999999
Q ss_pred CCcceeEEEEEcC
Q psy11771 319 TRRSSIGAAVLET 331 (347)
Q Consensus 319 ~~r~~~~~~~~~~ 331 (347)
.+|+.++++++++
T Consensus 511 ~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 511 SPRSAVGVVVLGG 523 (571)
T ss_pred cccccccEEEECC
Confidence 9999999998876
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4e-49 Score=377.89 Aligned_cols=300 Identities=18% Similarity=0.305 Sum_probs=250.2
Q ss_pred EEEEeeeCC------CCCC---CccCChHHHHHHHHHHHHhc-------cccccccccCCCChHHHHHhcccccccccCh
Q psy11771 31 QLLVFYKYP------LYGR---PAVNSSCGNYILPTAWVSVA-------LQLLRHVKLPLLARDFLMNSVESESLIKEST 94 (347)
Q Consensus 31 ~~~~~~~~~------l~~~---~~v~~E~~v~~~~~~Wv~~~-------~~ll~~vr~~~l~~~~l~~~l~~~~l~~~~~ 94 (347)
+.++|+.++ ||++ ++|.+|++||+++++|++|| ++|+++|||+++++.++. .+.+++++..++
T Consensus 160 ~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~ 238 (557)
T PHA02713 160 TTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQNLDKKSRL-LLYSNKTINMYP 238 (557)
T ss_pred CChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhh-hhcchHHHHhhH
Confidence 345566665 4443 36899999999999999999 789999999999999987 677889999999
Q ss_pred hHHHHHHHHHHhccCccccccc-----------------ccCccccccCCCCCCeEEEEEEEEECCEEEEEcccC-CCCC
Q psy11771 95 ECQELLLEAMKYHLLPEQRSLL-----------------TTKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYD-GASC 156 (347)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~r~~~~~~~~~~~~~~~~~~~~lyv~GG~~-~~~~ 156 (347)
+|++++.++..++....+...+ ......++....++..+..+++++++++||++||.+ ....
T Consensus 239 ~c~~~l~~a~~~~~~~~r~~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~ 318 (557)
T PHA02713 239 SCIQFLLDNKQNRNIIPRQLCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPS 318 (557)
T ss_pred HHHHHHhhhhhhcccCCcceEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCc
Confidence 9999998877543221111100 011112333345556666789999999999999985 3445
Q ss_pred CCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC
Q psy11771 157 LSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD 236 (347)
Q Consensus 157 ~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 236 (347)
.+++++||+.+++|.++++|+.+|..+++++++++||++||.++....+++++|||.+++|+.+++||.+|..+++++++
T Consensus 319 ~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~ 398 (557)
T PHA02713 319 LNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLD 398 (557)
T ss_pred cceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEEC
Confidence 68899999999999999999999999999999999999999876666788999999999999999999999999999999
Q ss_pred CEEEEEcccCCC------------------ccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCC-
Q psy11771 237 GAIYCVGGNDGT------------------MCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSS- 297 (347)
Q Consensus 237 ~~iyv~GG~~~~------------------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~- 297 (347)
|+||++||.++. ...+++++|||++++|+.+++|+.+|..+++++++|+||++||.++...
T Consensus 399 g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 399 QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNV 478 (557)
T ss_pred CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCcc
Confidence 999999997542 1257899999999999999999999999999999999999999865332
Q ss_pred ccEEEEEeCCC-CcEEEccCCCCCcceeEEEEEcC
Q psy11771 298 LNSVEKYDPKL-NKWQLLTPMLTRRSSIGAAVLET 331 (347)
Q Consensus 298 ~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~~~~~~ 331 (347)
.+.+++|||++ ++|+.+++||.+|..++++++++
T Consensus 479 ~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~ 513 (557)
T PHA02713 479 KTCIFRYNTNTYNGWELITTTESRLSALHTILHDN 513 (557)
T ss_pred ceeEEEecCCCCCCeeEccccCcccccceeEEECC
Confidence 34689999999 89999999999999999999987
No 3
>KOG4441|consensus
Probab=100.00 E-value=2.4e-44 Score=343.63 Aligned_cols=254 Identities=41% Similarity=0.657 Sum_probs=223.8
Q ss_pred CCccceeeecccccccccceEEEecCeeEEEEEeeeCCCCCCCccCChHHHHHHHHHHHHhccccccccccCCCChHHHH
Q psy11771 2 PIAPMLYRRSRSGVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSVALQLLRHVKLPLLARDFLM 81 (347)
Q Consensus 2 ~~~~~~~~r~~h~~~~~~~~~y~~GG~~~~~~~~~~~~l~~~~~v~~E~~v~~~~~~Wv~~~~~ll~~vr~~~l~~~~l~ 81 (347)
++++||.+|.+|++++.+++||++||++. .
T Consensus 315 ~~a~m~~~r~~~~~~~~~~~lYv~GG~~~------------------~-------------------------------- 344 (571)
T KOG4441|consen 315 SLAPMPSPRCRVGVAVLNGKLYVVGGYDS------------------G-------------------------------- 344 (571)
T ss_pred ecCCCCcccccccEEEECCEEEEEccccC------------------C--------------------------------
Confidence 68899999999999999999999999921 0
Q ss_pred HhcccccccccChhHHHHHHHHHHhccCcccccccccCccccccCCCCCCeEEEEEEEEECCEEEEEcccCCCCCCCeEE
Q psy11771 82 NSVESESLIKESTECQELLLEAMKYHLLPEQRSLLTTKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSME 161 (347)
Q Consensus 82 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 161 (347)
...+..++.|+...+.|.. ...|...+..+++++++|.||++||.++...+++++
T Consensus 345 ---------------~~~l~~ve~YD~~~~~W~~----------~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 345 ---------------SDRLSSVERYDPRTNQWTP----------VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred ---------------CcccceEEEecCCCCceec----------cCCccCccccceeEEECCEEEEEeccccccccccEE
Confidence 0022344556554444433 334455556779999999999999999999999999
Q ss_pred EEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCC-ccceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEEE
Q psy11771 162 RYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTN-YQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIY 240 (347)
Q Consensus 162 ~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 240 (347)
+|||.+++|..+++|+.+|..+++++++++||++||..... .++++++|||.+++|+.+++|+.+|.++++++++++||
T Consensus 400 ~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iY 479 (571)
T KOG4441|consen 400 CYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIY 479 (571)
T ss_pred EecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEE
Confidence 99999999999999999999999999999999999988776 89999999999999999999999999999999999999
Q ss_pred EEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCCCCC
Q psy11771 241 CVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTR 320 (347)
Q Consensus 241 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 320 (347)
++||+++.....++++|||++++|+.+++|+.+|..+++++++++||++||+++...++.+++|||.+++|+..+++...
T Consensus 480 vvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~ 559 (571)
T KOG4441|consen 480 VVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESG 559 (571)
T ss_pred EECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCCcccc
Confidence 99999887778889999999999999999999999999999999999999999999999999999999999999996666
Q ss_pred cceeEEEEEc
Q psy11771 321 RSSIGAAVLE 330 (347)
Q Consensus 321 r~~~~~~~~~ 330 (347)
|...+++++.
T Consensus 560 ~~~~~~~~~~ 569 (571)
T KOG4441|consen 560 RGGAGVAVIP 569 (571)
T ss_pred ccCcceEEec
Confidence 6666666654
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2e-42 Score=333.76 Aligned_cols=287 Identities=20% Similarity=0.375 Sum_probs=232.9
Q ss_pred CCccCChHHHHHHHHHHHHhc--------cccccccccCCCChHHHHHhcc------cccccccChhHHHHHHHHHHhcc
Q psy11771 43 RPAVNSSCGNYILPTAWVSVA--------LQLLRHVKLPLLARDFLMNSVE------SESLIKESTECQELLLEAMKYHL 108 (347)
Q Consensus 43 ~~~v~~E~~v~~~~~~Wv~~~--------~~ll~~vr~~~l~~~~l~~~l~------~~~l~~~~~~~~~~~~~~~~~~~ 108 (347)
+++|.+|++||+++++|++|| ++|+++|||+++++++|.+... ++.++ .++.|..++.++..+..
T Consensus 162 ~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 240 (534)
T PHA03098 162 KLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKYNLN 240 (534)
T ss_pred CcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHhccc
Confidence 335889999999999999998 7899999999999999998875 66666 77789888887765432
Q ss_pred Cccccc-----cc-------------ccCccccccCCCCC--CeEEEEEEEEECCEEEEEcccCCCC-CCCeEEEEeCCC
Q psy11771 109 LPEQRS-----LL-------------TTKRTQERKPEGML--PYVFAIGTCSFDGLLYACGGYDGAS-CLSSMERYDPLT 167 (347)
Q Consensus 109 ~~~~~~-----~~-------------~~~~~~~r~~~~~~--~~~~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~ 167 (347)
...... .+ .......+.-..+. .....++++++++.||++||.+... ..+++++||+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 320 (534)
T PHA03098 241 KILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT 320 (534)
T ss_pred CCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCC
Confidence 100000 00 00000000000000 0122348899999999999996533 456899999999
Q ss_pred CcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCC
Q psy11771 168 GVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDG 247 (347)
Q Consensus 168 ~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 247 (347)
++|.++++++.+|..++++.++++||++||.......+++++||+.+++|+..+++|.+|..+++++++++||++||...
T Consensus 321 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~ 400 (534)
T PHA03098 321 KSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISK 400 (534)
T ss_pred CeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCC
Confidence 99999999999999999999999999999988666778999999999999999999999999999999999999999643
Q ss_pred -CccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCC---CccEEEEEeCCCCcEEEccCCCCCcce
Q psy11771 248 -TMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSS---SLNSVEKYDPKLNKWQLLTPMLTRRSS 323 (347)
Q Consensus 248 -~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~r~~ 323 (347)
....+++++||+.+++|+.++++|.+|.+|+++.++++||++||.+... ..+.+++||+++++|+.+++++.+|..
T Consensus 401 ~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 480 (534)
T PHA03098 401 NDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN 480 (534)
T ss_pred CCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc
Confidence 3446899999999999999999999999999999999999999976432 256799999999999999999999999
Q ss_pred eEEEEEc
Q psy11771 324 IGAAVLE 330 (347)
Q Consensus 324 ~~~~~~~ 330 (347)
+++++++
T Consensus 481 ~~~~~~~ 487 (534)
T PHA03098 481 ASLCIFN 487 (534)
T ss_pred ceEEEEC
Confidence 9998874
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2e-40 Score=313.69 Aligned_cols=264 Identities=19% Similarity=0.276 Sum_probs=205.8
Q ss_pred CCCCC--ccCChHHHHHHHHHHHHhc----ccccc----ccccCCCChHHHHHhcccccccccChhHHHHHHHHHHhccC
Q psy11771 40 LYGRP--AVNSSCGNYILPTAWVSVA----LQLLR----HVKLPLLARDFLMNSVESESLIKESTECQELLLEAMKYHLL 109 (347)
Q Consensus 40 l~~~~--~v~~E~~v~~~~~~Wv~~~----~~ll~----~vr~~~l~~~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 109 (347)
||+++ +|.+|++||+++++|++|+ +++++ .+|++++++.++.. +..++.++..++..
T Consensus 171 lLssd~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l~~-------------~~~~~~~~~~~~~~ 237 (480)
T PHA02790 171 ILESDELNVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGINN-------------VKWILDCTKIFHCD 237 (480)
T ss_pred hcccccCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCChhhCCHHHHHH-------------HHHHHHHHHHhhcc
Confidence 44444 5889999999999999998 45555 36777777776632 23344444443321
Q ss_pred cccccccccCccccccCCCCCCe--EEEEE-EEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEE
Q psy11771 110 PEQRSLLTTKRTQERKPEGMLPY--VFAIG-TCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIA 186 (347)
Q Consensus 110 ~~~~~~~~~~~~~~r~~~~~~~~--~~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~ 186 (347)
...+..... ..........+. ...++ ++..++.||++||.+.....+++++||+.+++|..+++|+.+|..++++
T Consensus 238 ~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v 315 (480)
T PHA02790 238 KQPRKSYKY--PFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV 315 (480)
T ss_pred ccccccccc--cccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE
Confidence 100000000 000000000000 01123 4558999999999876666788999999999999999999999999999
Q ss_pred EECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEE
Q psy11771 187 VVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEP 266 (347)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 266 (347)
+++++||++||.+.. +++++||+.+++|+.+++||.+|..+++++++|+||++||.+.. .+++++|||.+++|+.
T Consensus 316 ~~~~~iYviGG~~~~---~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~ 390 (480)
T PHA02790 316 PANNKLYVVGGLPNP---TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQF 390 (480)
T ss_pred EECCEEEEECCcCCC---CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEe
Confidence 999999999997532 67899999999999999999999999999999999999998543 3689999999999999
Q ss_pred cCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCCCCCcceeEEEEEcC
Q psy11771 267 IAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLET 331 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 331 (347)
+++|+.+|..+++++++|+||++||. +++|||++++|+.+++|+.+|..++++++++
T Consensus 391 ~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~ 447 (480)
T PHA02790 391 GPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPELIIVDN 447 (480)
T ss_pred CCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccEEEEECC
Confidence 99999999999999999999999983 6899999999999999999999999999886
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9.7e-40 Score=297.56 Aligned_cols=206 Identities=21% Similarity=0.352 Sum_probs=167.9
Q ss_pred EEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCC-----CCCccceEEEEECCEEEEEcCcCCCC------c
Q psy11771 135 AIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAM-----TTRRRYCRIAVVENCLYALGGFDSTN------Y 203 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-----~~~r~~~~~~~~~~~lyv~GG~~~~~------~ 203 (347)
.+++++++++||+|||.+....++++++||+.+++|+.++++ |.+|..|+++..+++|||+||..... .
T Consensus 78 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 157 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPER 157 (341)
T ss_pred ceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcc
Confidence 458899999999999997666678999999999999998876 78899999999999999999986431 3
Q ss_pred cceEEEEeCCCCcEEecCCCC---CCCcceEEEEECCEEEEEcccCCC--------ccCCeEEEEECCCCeEEEcCC---
Q psy11771 204 QASVERLDPRMGKWAPVPSMS---SRRSSCGVAALDGAIYCVGGNDGT--------MCMSSGERFNVRRNSWEPIAP--- 269 (347)
Q Consensus 204 ~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~v~~yd~~~~~W~~~~~--- 269 (347)
.+++++||+.+++|+.++++. .+|..+++++++++||++||.... ...+++++||+++++|++++.
T Consensus 158 ~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~ 237 (341)
T PLN02153 158 FRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA 237 (341)
T ss_pred cceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC
Confidence 468999999999999998654 788899999999999999997421 125789999999999999874
Q ss_pred CCCCCcceEEEEECCEEEEEeccCC---------CCCccEEEEEeCCCCcEEEcc-----CCCCCcceeEEEEEcCCCcc
Q psy11771 270 MLSRRSTHEVVNIEGYLLTMGGNDG---------SSSLNSVEKYDPKLNKWQLLT-----PMLTRRSSIGAAVLETLNIE 335 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~~lyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~-----~~~~~r~~~~~~~~~~~~~~ 335 (347)
+|.+|..|++++++++||||||... ....+++++||+++++|+.+. ++|..+..++++.+.+.
T Consensus 238 ~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~--- 314 (341)
T PLN02153 238 KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGK--- 314 (341)
T ss_pred CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCc---
Confidence 6889999999999999999999631 223568999999999999986 45555655555544433
Q ss_pred eEEEEcCC
Q psy11771 336 KRLLVAPP 343 (347)
Q Consensus 336 ~~~~~~~~ 343 (347)
.++++.++
T Consensus 315 ~~~~~~gG 322 (341)
T PLN02153 315 NGLLMHGG 322 (341)
T ss_pred ceEEEEcC
Confidence 34555444
No 7
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=316.77 Aligned_cols=238 Identities=18% Similarity=0.279 Sum_probs=196.3
Q ss_pred CCccceeeecccccccccceEEEecCeeEEEEEeeeCCCCCCCccCChHHHHHHHHHHHHhccccccccccCCCChHHHH
Q psy11771 2 PIAPMLYRRSRSGVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSVALQLLRHVKLPLLARDFLM 81 (347)
Q Consensus 2 ~~~~~~~~r~~h~~~~~~~~~y~~GG~~~~~~~~~~~~l~~~~~v~~E~~v~~~~~~Wv~~~~~ll~~vr~~~l~~~~l~ 81 (347)
+++|||.+|.+|++++.+++|||+||.... ..
T Consensus 286 ~l~~mp~~r~~~~~a~l~~~IYviGG~~~~------------~~------------------------------------ 317 (557)
T PHA02713 286 VISTIPNHIINYASAIVDNEIIIAGGYNFN------------NP------------------------------------ 317 (557)
T ss_pred ECCCCCccccceEEEEECCEEEEEcCCCCC------------CC------------------------------------
Confidence 578999999999999999999999998100 00
Q ss_pred HhcccccccccChhHHHHHHHHHHhccCcccccccccCccccccCCCCCCeEEEEEEEEECCEEEEEcccCCCCCCCeEE
Q psy11771 82 NSVESESLIKESTECQELLLEAMKYHLLPEQRSLLTTKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSME 161 (347)
Q Consensus 82 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 161 (347)
.+..++.|+.....|..++ .++..+..+++++++++||++||.++...+++++
T Consensus 318 -----------------~~~~v~~Yd~~~n~W~~~~----------~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve 370 (557)
T PHA02713 318 -----------------SLNKVYKINIENKIHVELP----------PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIE 370 (557)
T ss_pred -----------------ccceEEEEECCCCeEeeCC----------CCcchhhceeEEEECCEEEEECCcCCCCCCceEE
Confidence 0012223343333333222 2333344558999999999999998766778899
Q ss_pred EEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCC------------------CccceEEEEeCCCCcEEecCCC
Q psy11771 162 RYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDST------------------NYQASVERLDPRMGKWAPVPSM 223 (347)
Q Consensus 162 ~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~------------------~~~~~~~~yd~~~~~W~~~~~~ 223 (347)
+|||.+++|+.+++||.+|..+++++++++||++||.... ...+++++|||.+++|+.+++|
T Consensus 371 ~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m 450 (557)
T PHA02713 371 CYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF 450 (557)
T ss_pred EEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC
Confidence 9999999999999999999999999999999999997532 1257899999999999999999
Q ss_pred CCCCcceEEEEECCEEEEEcccCCCc-cCCeEEEEECCC-CeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEE
Q psy11771 224 SSRRSSCGVAALDGAIYCVGGNDGTM-CMSSGERFNVRR-NSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSV 301 (347)
Q Consensus 224 p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v 301 (347)
+.+|..+++++++|+||++||.++.. ..+.+++|||++ ++|+.+++||.+|..+++++++|+||++||+++. ..+
T Consensus 451 ~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~ 527 (557)
T PHA02713 451 WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESY---MLQ 527 (557)
T ss_pred CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecce---eeh
Confidence 99999999999999999999986433 335689999999 8999999999999999999999999999998763 479
Q ss_pred EEEeCCCCcEEEccCC
Q psy11771 302 EKYDPKLNKWQLLTPM 317 (347)
Q Consensus 302 ~~yd~~~~~W~~~~~~ 317 (347)
++|||.+++|+.+++-
T Consensus 528 e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 528 DTFNVYTYEWNHICHQ 543 (557)
T ss_pred hhcCcccccccchhhh
Confidence 9999999999998763
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.2e-38 Score=300.87 Aligned_cols=191 Identities=19% Similarity=0.358 Sum_probs=166.7
Q ss_pred EEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCC---CCCccceEEEEECCEEEEEcCcCCCCccceEEEEe
Q psy11771 135 AIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAM---TTRRRYCRIAVVENCLYALGGFDSTNYQASVERLD 211 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd 211 (347)
.+++++++++|||+||.+....++++++||+.+++|++++++ |.+|..|+++.++++|||+||.......+++++||
T Consensus 221 ~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd 300 (470)
T PLN02193 221 GVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYN 300 (470)
T ss_pred ceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEE
Confidence 558899999999999998777788999999999999999887 78999999999999999999988776778999999
Q ss_pred CCCCcEEecCC---CCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCC---CCCCcceEEEEECCE
Q psy11771 212 PRMGKWAPVPS---MSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPM---LSRRSTHEVVNIEGY 285 (347)
Q Consensus 212 ~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~ 285 (347)
+.+++|+.+++ +|.+|..+++++++++||++||.++. ..+++++||+.+++|+.++++ |.+|..|++++++++
T Consensus 301 ~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~ 379 (470)
T PLN02193 301 IVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKH 379 (470)
T ss_pred CCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCE
Confidence 99999999864 67889999999999999999998654 368999999999999999754 889999999999999
Q ss_pred EEEEeccCC---------CCCccEEEEEeCCCCcEEEccC------CCCCcceeEE
Q psy11771 286 LLTMGGNDG---------SSSLNSVEKYDPKLNKWQLLTP------MLTRRSSIGA 326 (347)
Q Consensus 286 lyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~------~~~~r~~~~~ 326 (347)
|||+||... ....+++++||+.+++|+.++. .|.+|..+++
T Consensus 380 iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~ 435 (470)
T PLN02193 380 IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTAS 435 (470)
T ss_pred EEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccc
Confidence 999999753 1234689999999999999874 3567776654
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.5e-37 Score=284.09 Aligned_cols=197 Identities=16% Similarity=0.244 Sum_probs=157.3
Q ss_pred EEEEEEECCEEEEEcccCCCC------CCCeEEEEeCCCCcEEeCC-CCCCCccceEEE-EECCEEEEEcCcCCCC----
Q psy11771 135 AIGTCSFDGLLYACGGYDGAS------CLSSMERYDPLTGVWSSCP-AMTTRRRYCRIA-VVENCLYALGGFDSTN---- 202 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~~~------~~~~~~~~d~~~~~W~~~~-~~~~~r~~~~~~-~~~~~lyv~GG~~~~~---- 202 (347)
.+++++++++|||+||..... .++++++||+.+++|++++ ++|.+|..++++ .++++||++||.....
T Consensus 56 ~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~ 135 (346)
T TIGR03547 56 QAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGY 135 (346)
T ss_pred cceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHH
Confidence 458899999999999985321 4678999999999999987 456667767666 6899999999975320
Q ss_pred ------------------------------ccceEEEEeCCCCcEEecCCCCC-CCcceEEEEECCEEEEEcccCCCcc-
Q psy11771 203 ------------------------------YQASVERLDPRMGKWAPVPSMSS-RRSSCGVAALDGAIYCVGGNDGTMC- 250 (347)
Q Consensus 203 ------------------------------~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~- 250 (347)
..+++++||+.+++|+.+++||. +|..+++++++++||++||......
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 215 (346)
T TIGR03547 136 FADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLR 215 (346)
T ss_pred HhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCcc
Confidence 13789999999999999999996 6888999999999999999854332
Q ss_pred CCeEEEEE--CCCCeEEEcCCCCCCC-------cceEEEEECCEEEEEeccCCCC-----------------CccEEEEE
Q psy11771 251 MSSGERFN--VRRNSWEPIAPMLSRR-------STHEVVNIEGYLLTMGGNDGSS-----------------SLNSVEKY 304 (347)
Q Consensus 251 ~~~v~~yd--~~~~~W~~~~~~~~~~-------~~~~~~~~~~~lyv~GG~~~~~-----------------~~~~v~~y 304 (347)
..+++.|| +++++|+.+++||.+| ..|.+++++++||++||.+... ....+++|
T Consensus 216 ~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y 295 (346)
T TIGR03547 216 TAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY 295 (346)
T ss_pred chheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEE
Confidence 23455555 5778999999998765 3455778899999999975211 12468999
Q ss_pred eCCCCcEEEccCCCCCcceeEEEEEcC
Q psy11771 305 DPKLNKWQLLTPMLTRRSSIGAAVLET 331 (347)
Q Consensus 305 d~~~~~W~~~~~~~~~r~~~~~~~~~~ 331 (347)
|+++++|+.+++||.+|..++++++++
T Consensus 296 d~~~~~W~~~~~lp~~~~~~~~~~~~~ 322 (346)
T TIGR03547 296 ALDNGKWSKVGKLPQGLAYGVSVSWNN 322 (346)
T ss_pred EecCCcccccCCCCCCceeeEEEEcCC
Confidence 999999999999999999888776663
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=6.4e-37 Score=277.10 Aligned_cols=211 Identities=16% Similarity=0.211 Sum_probs=172.9
Q ss_pred EEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcE----EeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEE
Q psy11771 135 AIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVW----SSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERL 210 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~y 210 (347)
.+++++++++||++||.++...++++++||+.+++| +.++++|.+|..+++++++++|||+||.......+++++|
T Consensus 65 ~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~y 144 (323)
T TIGR03548 65 YGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLF 144 (323)
T ss_pred ceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEE
Confidence 346788899999999998777788999999999987 7889999999999999999999999997655567899999
Q ss_pred eCCCCcEEecCCCC-CCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCC-----CCCcceEEEE-EC
Q psy11771 211 DPRMGKWAPVPSMS-SRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPML-----SRRSTHEVVN-IE 283 (347)
Q Consensus 211 d~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~-----~~~~~~~~~~-~~ 283 (347)
|+.+++|+.++++| .+|..+++++++++||++||.+... ..++++||+++++|+.+++++ ..+..+++++ .+
T Consensus 145 d~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~ 223 (323)
T TIGR03548 145 NLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINE 223 (323)
T ss_pred cCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECC
Confidence 99999999999988 5788888899999999999986433 357899999999999998763 2333444444 47
Q ss_pred CEEEEEeccCCCC--------------------------------CccEEEEEeCCCCcEEEccCCC-CCcceeEEEEEc
Q psy11771 284 GYLLTMGGNDGSS--------------------------------SLNSVEKYDPKLNKWQLLTPML-TRRSSIGAAVLE 330 (347)
Q Consensus 284 ~~lyv~GG~~~~~--------------------------------~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~ 330 (347)
++||++||.++.. ..+++++||+.+++|+.++++| .+|..+++++++
T Consensus 224 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~ 303 (323)
T TIGR03548 224 SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTG 303 (323)
T ss_pred CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEEC
Confidence 9999999976321 1367999999999999999887 589999999998
Q ss_pred CCCcceEEEEcCCCCC
Q psy11771 331 TLNIEKRLLVAPPAPT 346 (347)
Q Consensus 331 ~~~~~~~~~~~~~~~~ 346 (347)
+.....-..+.|+.+|
T Consensus 304 ~~iyv~GG~~~pg~rt 319 (323)
T TIGR03548 304 NNIFSINGELKPGVRT 319 (323)
T ss_pred CEEEEEeccccCCcCC
Confidence 7544444444555555
No 11
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=7e-36 Score=288.26 Aligned_cols=190 Identities=22% Similarity=0.384 Sum_probs=169.6
Q ss_pred EEEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCC-CccceEEEEeC
Q psy11771 134 FAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDST-NYQASVERLDP 212 (347)
Q Consensus 134 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~yd~ 212 (347)
..+++++++++||++||.+.....+++++||+.+++|+.++++|.+|..++++.++++||++||.... ...+++++||+
T Consensus 334 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~ 413 (534)
T PHA03098 334 KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSL 413 (534)
T ss_pred ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeC
Confidence 34588899999999999986667788999999999999999999999999999999999999997543 34688999999
Q ss_pred CCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCc---cCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEE
Q psy11771 213 RMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTM---CMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTM 289 (347)
Q Consensus 213 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~ 289 (347)
.+++|+.++++|.+|..++++.++++||++||.+... ..+.+++||+.+++|+.+++++.+|..+++++++++||++
T Consensus 414 ~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~ 493 (534)
T PHA03098 414 NTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVV 493 (534)
T ss_pred CCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEE
Confidence 9999999999999999999999999999999985432 2567999999999999999999999999999999999999
Q ss_pred eccCCCCCccEEEEEeCCCCcEEEccCCCCCcce
Q psy11771 290 GGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSS 323 (347)
Q Consensus 290 GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 323 (347)
||.++....+++++||+++++|+.++.+|.....
T Consensus 494 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~ 527 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGS 527 (534)
T ss_pred cCCcCCcccceeEEEeCCCCEEEecCCCcccccc
Confidence 9987666678999999999999999887765443
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.9e-35 Score=272.26 Aligned_cols=197 Identities=17% Similarity=0.232 Sum_probs=156.3
Q ss_pred EEEEEEECCEEEEEcccCC-C-----CCCCeEEEEeCCCCcEEeCCC-CCCCccceEEEE-ECCEEEEEcCcCCC-----
Q psy11771 135 AIGTCSFDGLLYACGGYDG-A-----SCLSSMERYDPLTGVWSSCPA-MTTRRRYCRIAV-VENCLYALGGFDST----- 201 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~-~-----~~~~~~~~~d~~~~~W~~~~~-~~~~r~~~~~~~-~~~~lyv~GG~~~~----- 201 (347)
.+++++++++|||+||... . ..++++++||+.+++|+.+++ .|.++..+++++ .+++||++||....
T Consensus 77 ~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~ 156 (376)
T PRK14131 77 QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156 (376)
T ss_pred cceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHH
Confidence 4578899999999999854 1 235789999999999999985 466667777666 79999999997531
Q ss_pred -----------------------------CccceEEEEeCCCCcEEecCCCCC-CCcceEEEEECCEEEEEcccCCCc-c
Q psy11771 202 -----------------------------NYQASVERLDPRMGKWAPVPSMSS-RRSSCGVAALDGAIYCVGGNDGTM-C 250 (347)
Q Consensus 202 -----------------------------~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~-~ 250 (347)
...+++++||+.+++|+.++++|. +|..++++.++++||++||..... .
T Consensus 157 ~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~ 236 (376)
T PRK14131 157 FEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLR 236 (376)
T ss_pred HhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcC
Confidence 124789999999999999999995 788888899999999999974332 2
Q ss_pred CCeEE--EEECCCCeEEEcCCCCCCCcc--------eEEEEECCEEEEEeccCCCC-----------------CccEEEE
Q psy11771 251 MSSGE--RFNVRRNSWEPIAPMLSRRST--------HEVVNIEGYLLTMGGNDGSS-----------------SLNSVEK 303 (347)
Q Consensus 251 ~~~v~--~yd~~~~~W~~~~~~~~~~~~--------~~~~~~~~~lyv~GG~~~~~-----------------~~~~v~~ 303 (347)
..+++ .||+++++|+.+++||.+|.. +.+++++++||++||.+... ....+++
T Consensus 237 ~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 316 (376)
T PRK14131 237 TDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEI 316 (376)
T ss_pred ChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehhe
Confidence 23344 567899999999999887642 23567899999999975311 1135789
Q ss_pred EeCCCCcEEEccCCCCCcceeEEEEEcC
Q psy11771 304 YDPKLNKWQLLTPMLTRRSSIGAAVLET 331 (347)
Q Consensus 304 yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 331 (347)
||+++++|+.+++||.+|.+++++++++
T Consensus 317 yd~~~~~W~~~~~lp~~r~~~~av~~~~ 344 (376)
T PRK14131 317 YALVNGKWQKVGELPQGLAYGVSVSWNN 344 (376)
T ss_pred EEecCCcccccCcCCCCccceEEEEeCC
Confidence 9999999999999999999998887764
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=8.7e-35 Score=275.25 Aligned_cols=167 Identities=23% Similarity=0.432 Sum_probs=152.1
Q ss_pred EEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCC
Q psy11771 135 AIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRM 214 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~ 214 (347)
.+++++++++||++||.++ .+++++||+.+++|..+++||.+|..+++++++++||++||.... .+.+++|||.+
T Consensus 311 ~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~ 385 (480)
T PHA02790 311 YASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNH 385 (480)
T ss_pred cceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCC
Confidence 3478889999999999753 256899999999999999999999999999999999999997543 36799999999
Q ss_pred CcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCC
Q psy11771 215 GKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDG 294 (347)
Q Consensus 215 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 294 (347)
++|+.+++|+.+|..+++++++|+||++||. +++||+++++|+.+++|+.+|..+++++++|+||++||.++
T Consensus 386 ~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~ 457 (480)
T PHA02790 386 DQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYR 457 (480)
T ss_pred CEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCC
Confidence 9999999999999999999999999999983 68999999999999999999999999999999999999876
Q ss_pred CCCccEEEEEeCCCCcEEEc
Q psy11771 295 SSSLNSVEKYDPKLNKWQLL 314 (347)
Q Consensus 295 ~~~~~~v~~yd~~~~~W~~~ 314 (347)
....+.+++|||++++|+..
T Consensus 458 ~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 458 GSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CcccceEEEEECCCCeEEec
Confidence 55567899999999999864
No 14
>KOG4693|consensus
Probab=100.00 E-value=2.3e-34 Score=236.99 Aligned_cols=200 Identities=19% Similarity=0.369 Sum_probs=172.8
Q ss_pred eEEEEEEEEECCEEEEEcccCC-CCCCCeEEEEeCCCCcEEeC---CCCCCCccceEEEEECCEEEEEcCcCCC--Cccc
Q psy11771 132 YVFAIGTCSFDGLLYACGGYDG-ASCLSSMERYDPLTGVWSSC---PAMTTRRRYCRIAVVENCLYALGGFDST--NYQA 205 (347)
Q Consensus 132 ~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~~~~W~~~---~~~~~~r~~~~~~~~~~~lyv~GG~~~~--~~~~ 205 (347)
.+++|+++.+++++|+.||.+. ....+.++.|||.++.|++. +.+|.+|-+|++++.++..|||||+..+ ..++
T Consensus 78 qRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~ 157 (392)
T KOG4693|consen 78 QRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQ 157 (392)
T ss_pred hhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhc
Confidence 3578899999999999999965 45567799999999999864 3578999999999999999999999765 5678
Q ss_pred eEEEEeCCCCcEEecC---CCCCCCcceEEEEECCEEEEEcccCCC---------ccCCeEEEEECCCCeEEEcCC---C
Q psy11771 206 SVERLDPRMGKWAPVP---SMSSRRSSCGVAALDGAIYCVGGNDGT---------MCMSSGERFNVRRNSWEPIAP---M 270 (347)
Q Consensus 206 ~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~---~ 270 (347)
+++.+|..+.+|+.+. ..|.-|..|+++++++.+||+||..+. ..-+++..+|..++.|...++ .
T Consensus 158 d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~ 237 (392)
T KOG4693|consen 158 DTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK 237 (392)
T ss_pred cceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC
Confidence 9999999999999885 456778899999999999999997432 234567789999999998763 5
Q ss_pred CCCCcceEEEEECCEEEEEeccCC--CCCccEEEEEeCCCCcEEEccC---CCCCcceeEEEEEcC
Q psy11771 271 LSRRSTHEVVNIEGYLLTMGGNDG--SSSLNSVEKYDPKLNKWQLLTP---MLTRRSSIGAAVLET 331 (347)
Q Consensus 271 ~~~~~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~ 331 (347)
|.+|..|++.+.+++||+|||+++ +..++++++|||++..|+.+.. -|.+|..+.+++.++
T Consensus 238 P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~ 303 (392)
T KOG4693|consen 238 PGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGG 303 (392)
T ss_pred CCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECC
Confidence 789999999999999999999986 4567899999999999999874 789999999988875
No 15
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6.4e-33 Score=252.75 Aligned_cols=204 Identities=21% Similarity=0.312 Sum_probs=169.7
Q ss_pred EEEEEEECCEEEEEcccCC--CCCCCeEEEEeCCCCcEEeCCCCC-CCc---cceEEEEECCEEEEEcCcCCCCccceEE
Q psy11771 135 AIGTCSFDGLLYACGGYDG--ASCLSSMERYDPLTGVWSSCPAMT-TRR---RYCRIAVVENCLYALGGFDSTNYQASVE 208 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~~-~~r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 208 (347)
.+++++++++|||+||... ....+++++||+.+++|.++++++ .+| ..++++.++++||++||.......++++
T Consensus 25 ~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 104 (341)
T PLN02153 25 SHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFY 104 (341)
T ss_pred cceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEE
Confidence 4588999999999999853 223478999999999999988764 333 3688899999999999987666678999
Q ss_pred EEeCCCCcEEecCCC-----CCCCcceEEEEECCEEEEEcccCCCc------cCCeEEEEECCCCeEEEcCCCC---CCC
Q psy11771 209 RLDPRMGKWAPVPSM-----SSRRSSCGVAALDGAIYCVGGNDGTM------CMSSGERFNVRRNSWEPIAPML---SRR 274 (347)
Q Consensus 209 ~yd~~~~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~------~~~~v~~yd~~~~~W~~~~~~~---~~~ 274 (347)
+||+.+++|+.++++ |.+|..|++++.+++|||+||.+... .++++++||+++++|+.++++. .+|
T Consensus 105 ~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r 184 (341)
T PLN02153 105 SYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR 184 (341)
T ss_pred EEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC
Confidence 999999999999877 88999999999999999999985432 3568999999999999998764 789
Q ss_pred cceEEEEECCEEEEEeccCCC--------CCccEEEEEeCCCCcEEEccC---CCCCcceeEEEEEcCCCcceEEEEcCC
Q psy11771 275 STHEVVNIEGYLLTMGGNDGS--------SSLNSVEKYDPKLNKWQLLTP---MLTRRSSIGAAVLETLNIEKRLLVAPP 343 (347)
Q Consensus 275 ~~~~~~~~~~~lyv~GG~~~~--------~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~~~~~~~~~~~~ 343 (347)
..|++++++++||++||.... ...+++++||+++++|++++. +|.+|..++++++++ +|.+..+
T Consensus 185 ~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~-----~iyv~GG 259 (341)
T PLN02153 185 GGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGK-----YIIIFGG 259 (341)
T ss_pred CcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECC-----EEEEECc
Confidence 999999999999999986421 125789999999999999874 788999999998874 4555544
No 16
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.8e-32 Score=255.39 Aligned_cols=206 Identities=20% Similarity=0.364 Sum_probs=175.3
Q ss_pred eEEEEEEEEECCEEEEEcccCC-C-CCCCeEEEEeCCCCcEEeCCC---CCC-CccceEEEEECCEEEEEcCcCCCCccc
Q psy11771 132 YVFAIGTCSFDGLLYACGGYDG-A-SCLSSMERYDPLTGVWSSCPA---MTT-RRRYCRIAVVENCLYALGGFDSTNYQA 205 (347)
Q Consensus 132 ~~~~~~~~~~~~~lyv~GG~~~-~-~~~~~~~~~d~~~~~W~~~~~---~~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~ 205 (347)
.+..|+++++++.||++||... . ...+++++||+.+++|+.++. +|. +|..++++.++++|||+||.......+
T Consensus 165 pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~n 244 (470)
T PLN02193 165 LRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYN 244 (470)
T ss_pred CccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCc
Confidence 4456689999999999999843 2 234679999999999998764 333 356788899999999999987766788
Q ss_pred eEEEEeCCCCcEEecCCC---CCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCC---CCCCCcceEE
Q psy11771 206 SVERLDPRMGKWAPVPSM---SSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAP---MLSRRSTHEV 279 (347)
Q Consensus 206 ~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~ 279 (347)
++++||+.+++|+.++++ |.+|..|++++++++||++||.+.....+++++||+.+++|+.++. ++.+|..|++
T Consensus 245 dv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~ 324 (470)
T PLN02193 245 GFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGL 324 (470)
T ss_pred cEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEE
Confidence 999999999999999887 8899999999999999999999877778899999999999999874 6788999999
Q ss_pred EEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCC---CCCcceeEEEEEcCCCcceEEEEcCC
Q psy11771 280 VNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPM---LTRRSSIGAAVLETLNIEKRLLVAPP 343 (347)
Q Consensus 280 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~ 343 (347)
++++++||++||.++. ..+++++||+++++|+.++.+ |.+|..|+++++++ ++.|..+
T Consensus 325 ~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~-----~iyv~GG 385 (470)
T PLN02193 325 EVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGK-----HIVIFGG 385 (470)
T ss_pred EEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECC-----EEEEECC
Confidence 9999999999997653 368899999999999999754 88999999998864 4555544
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.7e-32 Score=252.79 Aligned_cols=243 Identities=18% Similarity=0.229 Sum_probs=179.6
Q ss_pred CCccce-eeecccccccccceEEEecCeeEEEEEeeeCCCCCCCccCChHHHHHHHHHHHHhccccccccccCCCChHHH
Q psy11771 2 PIAPML-YRRSRSGVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSVALQLLRHVKLPLLARDFL 80 (347)
Q Consensus 2 ~~~~~~-~~r~~h~~~~~~~~~y~~GG~~~~~~~~~~~~l~~~~~v~~E~~v~~~~~~Wv~~~~~ll~~vr~~~l~~~~l 80 (347)
+++||| .+|.+|++++++++|||+||+... . .+
T Consensus 66 ~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~------------~---~~------------------------------- 99 (376)
T PRK14131 66 KIAAFPGGPREQAVAAFIDGKLYVFGGIGKT------------N---SE------------------------------- 99 (376)
T ss_pred ECCcCCCCCcccceEEEECCEEEEEcCCCCC------------C---CC-------------------------------
Confidence 467888 489999999999999999998200 0 00
Q ss_pred HHhcccccccccChhHHHHHHHHHHhccCcccccccccCccccccCCCCCCeEEEEEEEE-ECCEEEEEcccCCC-----
Q psy11771 81 MNSVESESLIKESTECQELLLEAMKYHLLPEQRSLLTTKRTQERKPEGMLPYVFAIGTCS-FDGLLYACGGYDGA----- 154 (347)
Q Consensus 81 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~----- 154 (347)
.....+.+++.|+.....|..++... +| .+..+++++ .+++||++||.+..
T Consensus 100 --------------~~~~~~~~v~~YD~~~n~W~~~~~~~--p~-------~~~~~~~~~~~~~~IYv~GG~~~~~~~~~ 156 (376)
T PRK14131 100 --------------GSPQVFDDVYKYDPKTNSWQKLDTRS--PV-------GLAGHVAVSLHNGKAYITGGVNKNIFDGY 156 (376)
T ss_pred --------------CceeEcccEEEEeCCCCEEEeCCCCC--CC-------cccceEEEEeeCCEEEEECCCCHHHHHHH
Confidence 00001234455665555565554321 22 122345555 89999999997531
Q ss_pred -----------------------------CCCCeEEEEeCCCCcEEeCCCCCC-CccceEEEEECCEEEEEcCcCCCC-c
Q psy11771 155 -----------------------------SCLSSMERYDPLTGVWSSCPAMTT-RRRYCRIAVVENCLYALGGFDSTN-Y 203 (347)
Q Consensus 155 -----------------------------~~~~~~~~~d~~~~~W~~~~~~~~-~r~~~~~~~~~~~lyv~GG~~~~~-~ 203 (347)
...+++++||+.+++|+.++++|. +|..++++.++++|||+||..... .
T Consensus 157 ~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~ 236 (376)
T PRK14131 157 FEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLR 236 (376)
T ss_pred HhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcC
Confidence 024679999999999999999986 788889999999999999974332 2
Q ss_pred cceEE--EEeCCCCcEEecCCCCCCCcc--------eEEEEECCEEEEEcccCCCc-----------------cCCeEEE
Q psy11771 204 QASVE--RLDPRMGKWAPVPSMSSRRSS--------CGVAALDGAIYCVGGNDGTM-----------------CMSSGER 256 (347)
Q Consensus 204 ~~~~~--~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~ 256 (347)
...++ .||+.+++|+.+++||.+|.. +.+++++++||++||.+... ....+++
T Consensus 237 ~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 316 (376)
T PRK14131 237 TDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEI 316 (376)
T ss_pred ChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehhe
Confidence 33343 567889999999999877642 23567899999999975321 1135789
Q ss_pred EECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCC-CCCccEEEEEeCCCCcEEE
Q psy11771 257 FNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDG-SSSLNSVEKYDPKLNKWQL 313 (347)
Q Consensus 257 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~ 313 (347)
||+++++|+.+++||.+|..+++++++++|||+||... ....+++++|++++++|..
T Consensus 317 yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 317 YALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 99999999999999999999999999999999999754 3567899999999988865
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=8e-31 Score=237.27 Aligned_cols=184 Identities=20% Similarity=0.267 Sum_probs=157.4
Q ss_pred EEEEEEEECCEEEEEcccCCCC----------CCCeEEEEe-CCC-CcEEeCCCCCCCccceEEEEECCEEEEEcCcCCC
Q psy11771 134 FAIGTCSFDGLLYACGGYDGAS----------CLSSMERYD-PLT-GVWSSCPAMTTRRRYCRIAVVENCLYALGGFDST 201 (347)
Q Consensus 134 ~~~~~~~~~~~lyv~GG~~~~~----------~~~~~~~~d-~~~-~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~ 201 (347)
.++.++++++.|||+||.+... ..+++++|+ +.. .+|.+++++|.+|..+++++++++||++||....
T Consensus 5 ~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~ 84 (323)
T TIGR03548 5 AGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSS 84 (323)
T ss_pred eeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCC
Confidence 4567888999999999986431 235678775 332 2799999999999888889999999999998776
Q ss_pred CccceEEEEeCCCCcE----EecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCC-CCCcc
Q psy11771 202 NYQASVERLDPRMGKW----APVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPML-SRRST 276 (347)
Q Consensus 202 ~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~ 276 (347)
...+++++||+.+++| +.++++|.+|..+++++++++||++||.......+++++||+.+++|+.++++| .+|..
T Consensus 85 ~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~ 164 (323)
T TIGR03548 85 ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ 164 (323)
T ss_pred CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc
Confidence 6678999999999987 778999999999999999999999999865566789999999999999999988 47888
Q ss_pred eEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCCC
Q psy11771 277 HEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPML 318 (347)
Q Consensus 277 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 318 (347)
|.+++++++||++||.+... ..++++||+++++|+.+++|+
T Consensus 165 ~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~ 205 (323)
T TIGR03548 165 PVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPT 205 (323)
T ss_pred ceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCC
Confidence 98899999999999986432 456899999999999998763
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.98 E-value=1.8e-30 Score=237.43 Aligned_cols=182 Identities=18% Similarity=0.283 Sum_probs=150.3
Q ss_pred EEEEEECCEEEEEcccCCCCCCCeEEEEeC--CCCcEEeCCCCC-CCccceEEEEECCEEEEEcCcCCC------Cccce
Q psy11771 136 IGTCSFDGLLYACGGYDGASCLSSMERYDP--LTGVWSSCPAMT-TRRRYCRIAVVENCLYALGGFDST------NYQAS 206 (347)
Q Consensus 136 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~--~~~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~ 206 (347)
.++++++++|||+||... +++++||+ .+++|.++++|| .+|..+++++++++|||+||.... ...++
T Consensus 11 ~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~ 86 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDD 86 (346)
T ss_pred ceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceeccc
Confidence 367788999999999742 57899996 678899999999 589999999999999999998532 14678
Q ss_pred EEEEeCCCCcEEecC-CCCCCCcceEEE-EECCEEEEEcccCCCc----------------------------------c
Q psy11771 207 VERLDPRMGKWAPVP-SMSSRRSSCGVA-ALDGAIYCVGGNDGTM----------------------------------C 250 (347)
Q Consensus 207 ~~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~~~~iyv~GG~~~~~----------------------------------~ 250 (347)
+|+||+.+++|+.++ ++|..|..++++ +++++||++||.+... .
T Consensus 87 v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (346)
T TIGR03547 87 VYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFW 166 (346)
T ss_pred EEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCc
Confidence 999999999999997 567777777766 6899999999985321 1
Q ss_pred CCeEEEEECCCCeEEEcCCCCC-CCcceEEEEECCEEEEEeccCCCC-CccEEEEEe--CCCCcEEEccCCCCCc
Q psy11771 251 MSSGERFNVRRNSWEPIAPMLS-RRSTHEVVNIEGYLLTMGGNDGSS-SLNSVEKYD--PKLNKWQLLTPMLTRR 321 (347)
Q Consensus 251 ~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd--~~~~~W~~~~~~~~~r 321 (347)
.+++++||+.+++|+.+++||. +|..+++++++++|||+||..... ...++++|| +++++|+.+++||.+|
T Consensus 167 ~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r 241 (346)
T TIGR03547 167 NKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPK 241 (346)
T ss_pred cceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCC
Confidence 3789999999999999999996 688899999999999999975432 224466665 5778999999998876
No 20
>KOG4693|consensus
Probab=99.97 E-value=7.8e-31 Score=216.16 Aligned_cols=170 Identities=21% Similarity=0.382 Sum_probs=142.5
Q ss_pred ccCCCCCCeEEEEEEEEECCEEEEEcccC--CCCCCCeEEEEeCCCCcEEeCCCC---CCCccceEEEEECCEEEEEcCc
Q psy11771 124 RKPEGMLPYVFAIGTCSFDGLLYACGGYD--GASCLSSMERYDPLTGVWSSCPAM---TTRRRYCRIAVVENCLYALGGF 198 (347)
Q Consensus 124 r~~~~~~~~~~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~~d~~~~~W~~~~~~---~~~r~~~~~~~~~~~lyv~GG~ 198 (347)
+.....+..+-+|++|++++.+|||||.. .+...+++..+|..+.+|+.+... |.=|-.|+++++++..|||||.
T Consensus 121 ~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR 200 (392)
T KOG4693|consen 121 EVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGR 200 (392)
T ss_pred ceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccc
Confidence 33334444555779999999999999994 445678899999999999987643 3447788999999999999998
Q ss_pred CCC---------CccceEEEEeCCCCcEEecCC---CCCCCcceEEEEECCEEEEEcccCCC--ccCCeEEEEECCCCeE
Q psy11771 199 DST---------NYQASVERLDPRMGKWAPVPS---MSSRRSSCGVAALDGAIYCVGGNDGT--MCMSSGERFNVRRNSW 264 (347)
Q Consensus 199 ~~~---------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~v~~yd~~~~~W 264 (347)
.+. .+.+++-.+|..++.|.+.++ .|.+|..|++.+++++||++||+++. ...+++|+|||.+..|
T Consensus 201 ~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W 280 (392)
T KOG4693|consen 201 SDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMW 280 (392)
T ss_pred cccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchh
Confidence 543 345778889999999998864 67899999999999999999999764 4678999999999999
Q ss_pred EEcC---CCCCCCcceEEEEECCEEEEEeccC
Q psy11771 265 EPIA---PMLSRRSTHEVVNIEGYLLTMGGND 293 (347)
Q Consensus 265 ~~~~---~~~~~~~~~~~~~~~~~lyv~GG~~ 293 (347)
+.+. .-|.+|..+.+++.++++|+|||..
T Consensus 281 ~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 281 SVISVRGKYPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred eeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence 9985 5788999999999999999999964
No 21
>KOG0379|consensus
Probab=99.96 E-value=8.7e-29 Score=233.26 Aligned_cols=202 Identities=20% Similarity=0.312 Sum_probs=176.6
Q ss_pred eEEEEEEEEECCEEEEEcccCC-CCCCCeEEEEeCCCCcEEeCC---CCCCCccceEEEEECCEEEEEcCcCCCC-ccce
Q psy11771 132 YVFAIGTCSFDGLLYACGGYDG-ASCLSSMERYDPLTGVWSSCP---AMTTRRRYCRIAVVENCLYALGGFDSTN-YQAS 206 (347)
Q Consensus 132 ~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~~~~W~~~~---~~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~ 206 (347)
.+++++++.++++||+|||.+. ...+++++.||+.+++|..+. ..|.+|.+|+++.+++++||+||.+... ..++
T Consensus 112 ~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~nd 191 (482)
T KOG0379|consen 112 PRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLND 191 (482)
T ss_pred cccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceee
Confidence 3456799999999999999973 555789999999999998764 4688999999999999999999998775 7899
Q ss_pred EEEEeCCCCcEEecC---CCCCCCcceEEEEECCEEEEEcccC-CCccCCeEEEEECCCCeEEEcC---CCCCCCcceEE
Q psy11771 207 VERLDPRMGKWAPVP---SMSSRRSSCGVAALDGAIYCVGGND-GTMCMSSGERFNVRRNSWEPIA---PMLSRRSTHEV 279 (347)
Q Consensus 207 ~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~ 279 (347)
+|+||+.+.+|.++. +.|.+|..|++++++++++++||.+ +...+++++.+|..+.+|..+. ..|.+|.+|..
T Consensus 192 l~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~ 271 (482)
T KOG0379|consen 192 LHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSL 271 (482)
T ss_pred eeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeee
Confidence 999999999999884 5788999999999999999999987 6778999999999999999765 57899999999
Q ss_pred EEECCEEEEEeccCCC--CCccEEEEEeCCCCcEEEccC----CCCCcceeEEEEEcCCC
Q psy11771 280 VNIEGYLLTMGGNDGS--SSLNSVEKYDPKLNKWQLLTP----MLTRRSSIGAAVLETLN 333 (347)
Q Consensus 280 ~~~~~~lyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~----~~~~r~~~~~~~~~~~~ 333 (347)
+..+++++++||.... ..+.+++.||.+++.|..+.. .|.+|..+.++.+....
T Consensus 272 ~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (482)
T KOG0379|consen 272 TVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELG 331 (482)
T ss_pred EEECCEEEEEcCCcccccccccccccccccccceeeeeccccccccccccccceeeccCC
Confidence 9889999999998764 358899999999999999864 36788888887776544
No 22
>KOG0379|consensus
Probab=99.95 E-value=1.4e-26 Score=218.27 Aligned_cols=200 Identities=22% Similarity=0.359 Sum_probs=174.7
Q ss_pred eEEEEEEEEECCEEEEEcccCCCCCCC--eEEEEeCCCCcEEeCC---CCCCCccceEEEEECCEEEEEcCcCC-CCccc
Q psy11771 132 YVFAIGTCSFDGLLYACGGYDGASCLS--SMERYDPLTGVWSSCP---AMTTRRRYCRIAVVENCLYALGGFDS-TNYQA 205 (347)
Q Consensus 132 ~~~~~~~~~~~~~lyv~GG~~~~~~~~--~~~~~d~~~~~W~~~~---~~~~~r~~~~~~~~~~~lyv~GG~~~-~~~~~ 205 (347)
.+..|+++.+++++|||||........ +++++|..+..|.... ..|.+|.+|+++.++++||+|||... ....+
T Consensus 60 ~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~ 139 (482)
T KOG0379|consen 60 PRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLN 139 (482)
T ss_pred hhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChh
Confidence 345668888899999999996544444 4999999999997754 46789999999999999999999985 45578
Q ss_pred eEEEEeCCCCcEEecC---CCCCCCcceEEEEECCEEEEEcccCCCc-cCCeEEEEECCCCeEEEcC---CCCCCCcceE
Q psy11771 206 SVERLDPRMGKWAPVP---SMSSRRSSCGVAALDGAIYCVGGNDGTM-CMSSGERFNVRRNSWEPIA---PMLSRRSTHE 278 (347)
Q Consensus 206 ~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~ 278 (347)
++++||+.+++|..+. ..|.+|.+|+++++++++||+||.+... ..+++++||+++.+|.++. +.|.+|.+|+
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~ 219 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHA 219 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCce
Confidence 9999999999999875 4689999999999999999999987665 8899999999999999984 6788999999
Q ss_pred EEEECCEEEEEeccC-CCCCccEEEEEeCCCCcEEEcc---CCCCCcceeEEEEEcC
Q psy11771 279 VVNIEGYLLTMGGND-GSSSLNSVEKYDPKLNKWQLLT---PMLTRRSSIGAAVLET 331 (347)
Q Consensus 279 ~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~ 331 (347)
++++++++++|||.. +...+++++++|..+.+|.++. .+|.+|++|..+..+.
T Consensus 220 ~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~ 276 (482)
T KOG0379|consen 220 MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGD 276 (482)
T ss_pred EEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECC
Confidence 999999999999987 6677899999999999999765 3899999999996553
No 23
>KOG4152|consensus
Probab=99.93 E-value=2.4e-25 Score=198.47 Aligned_cols=253 Identities=16% Similarity=0.208 Sum_probs=188.3
Q ss_pred ccceeeecccccccccceEEEecCeeEEEEEeeeCCCCCCCccCChHHHHHHHHHHHHhccccccccccCCCChHHHHHh
Q psy11771 4 APMLYRRSRSGVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTAWVSVALQLLRHVKLPLLARDFLMNS 83 (347)
Q Consensus 4 ~~~~~~r~~h~~~~~~~~~y~~GG~~~~~~~~~~~~l~~~~~v~~E~~v~~~~~~Wv~~~~~ll~~vr~~~l~~~~l~~~ 83 (347)
+|.|-+|-+|.++.++.-|.||||- +..+-.|..||+
T Consensus 27 GPvPrpRHGHRAVaikELiviFGGG--------------NEGiiDELHvYN----------------------------- 63 (830)
T KOG4152|consen 27 GPVPRPRHGHRAVAIKELIVIFGGG--------------NEGIIDELHVYN----------------------------- 63 (830)
T ss_pred CCCCCccccchheeeeeeEEEecCC--------------cccchhhhhhhc-----------------------------
Confidence 5899999999999999999999999 333444555554
Q ss_pred cccccccccChhHHHHHHHHHHhccCcccccccccCccccccCCCCCCeEEEEEEEEECCEEEEEcccCC-CCCCCeEEE
Q psy11771 84 VESESLIKESTECQELLLEAMKYHLLPEQRSLLTTKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDG-ASCLSSMER 162 (347)
Q Consensus 84 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~ 162 (347)
..+.+|-. |-....++..-.+++.+..+.+||+|||+.. ..+.++++.
T Consensus 64 ------------------------TatnqWf~-------PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYE 112 (830)
T KOG4152|consen 64 ------------------------TATNQWFA-------PAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYE 112 (830)
T ss_pred ------------------------cccceeec-------chhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHH
Confidence 32222211 1111112222345688889999999999943 344555544
Q ss_pred EeCCCCcEEeCC-------CCCCCccceEEEEECCEEEEEcCcCCC---------CccceEEEEeCCCC----cEEec--
Q psy11771 163 YDPLTGVWSSCP-------AMTTRRRYCRIAVVENCLYALGGFDST---------NYQASVERLDPRMG----KWAPV-- 220 (347)
Q Consensus 163 ~d~~~~~W~~~~-------~~~~~r~~~~~~~~~~~lyv~GG~~~~---------~~~~~~~~yd~~~~----~W~~~-- 220 (347)
.-...-.|+++. ++|-+|.+|+...++++.|+|||...+ .+++++|..++.-+ .|...
T Consensus 113 LQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t 192 (830)
T KOG4152|consen 113 LQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPIT 192 (830)
T ss_pred hhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccc
Confidence 333333456653 356789999999999999999997432 46788898887744 38765
Q ss_pred -CCCCCCCcceEEEEE------CCEEEEEcccCCCccCCeEEEEECCCCeEEEcC---CCCCCCcceEEEEECCEEEEEe
Q psy11771 221 -PSMSSRRSSCGVAAL------DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIA---PMLSRRSTHEVVNIEGYLLTMG 290 (347)
Q Consensus 221 -~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~lyv~G 290 (347)
..+|.+|..|.++++ ..++||+||.++- .+.++|.+|+++-.|.+.. -.|.+|+-|+++.+++++||||
T Consensus 193 ~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfG 271 (830)
T KOG4152|consen 193 YGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFG 271 (830)
T ss_pred cCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccccccCCCCCCcccccceeecceeEEec
Confidence 468999999999998 3589999998654 4689999999999999874 4678999999999999999999
Q ss_pred ccC-----C---------CCCccEEEEEeCCCCcEEEcc-------CCCCCcceeEEEEEcC
Q psy11771 291 GND-----G---------SSSLNSVEKYDPKLNKWQLLT-------PMLTRRSSIGAAVLET 331 (347)
Q Consensus 291 G~~-----~---------~~~~~~v~~yd~~~~~W~~~~-------~~~~~r~~~~~~~~~~ 331 (347)
|.- + ..+.+++-|++..+..|+.+- .+|.+|.+|.|++++.
T Consensus 272 GWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigt 333 (830)
T KOG4152|consen 272 GWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGT 333 (830)
T ss_pred ceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEecc
Confidence 941 1 224567889999999999763 2789999999999986
No 24
>KOG1230|consensus
Probab=99.92 E-value=3.1e-24 Score=187.01 Aligned_cols=203 Identities=20% Similarity=0.270 Sum_probs=160.1
Q ss_pred HHhccCcccccccccCccc-cccCCCCCCeEEEEEEEEECCEEEEEcccCCC------CCCCeEEEEeCCCCcEEeCC--
Q psy11771 104 MKYHLLPEQRSLLTTKRTQ-ERKPEGMLPYVFAIGTCSFDGLLYACGGYDGA------SCLSSMERYDPLTGVWSSCP-- 174 (347)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~~d~~~~~W~~~~-- 174 (347)
+.|+..+..|..+.++... ||..+. ++++..|.+|+|||.-.. ....++|.||..+++|+++.
T Consensus 101 y~Yn~k~~eWkk~~spn~P~pRsshq--------~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~ 172 (521)
T KOG1230|consen 101 YSYNTKKNEWKKVVSPNAPPPRSSHQ--------AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG 172 (521)
T ss_pred eEEeccccceeEeccCCCcCCCccce--------eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC
Confidence 4455555566655544444 444442 444455899999998321 23578999999999999875
Q ss_pred CCCCCccceEEEEECCEEEEEcCcCCC----CccceEEEEeCCCCcEEecCC---CCCCCcceEEEEE-CCEEEEEcccC
Q psy11771 175 AMTTRRRYCRIAVVENCLYALGGFDST----NYQASVERLDPRMGKWAPVPS---MSSRRSSCGVAAL-DGAIYCVGGND 246 (347)
Q Consensus 175 ~~~~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~ 246 (347)
.-|.+|++|.+++...+|++|||+-.. .+.+++|+||+.+-+|+.+.+ -|.+|.++.+.+. +|.||+.||+.
T Consensus 173 g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 173 GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchh
Confidence 468999999999999999999998443 467999999999999999864 4899999999888 99999999984
Q ss_pred C---------CccCCeEEEEECCC-----CeEEEcCC---CCCCCcceEEEEE-CCEEEEEeccCC---------CCCcc
Q psy11771 247 G---------TMCMSSGERFNVRR-----NSWEPIAP---MLSRRSTHEVVNI-EGYLLTMGGNDG---------SSSLN 299 (347)
Q Consensus 247 ~---------~~~~~~v~~yd~~~-----~~W~~~~~---~~~~~~~~~~~~~-~~~lyv~GG~~~---------~~~~~ 299 (347)
. ....++++.++++. -.|.++.+ -|.+|.++++++. +++-+.|||.-+ ....+
T Consensus 253 K~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~N 332 (521)
T KOG1230|consen 253 KQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFN 332 (521)
T ss_pred HhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhh
Confidence 3 23567899999988 67998865 5789999999888 679999999533 22468
Q ss_pred EEEEEeCCCCcEEEc
Q psy11771 300 SVEKYDPKLNKWQLL 314 (347)
Q Consensus 300 ~v~~yd~~~~~W~~~ 314 (347)
+++.||...++|.+.
T Consensus 333 DLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 333 DLYFFDLTRNRWSEG 347 (521)
T ss_pred hhhheecccchhhHh
Confidence 999999999999865
No 25
>KOG1230|consensus
Probab=99.91 E-value=2.2e-22 Score=175.58 Aligned_cols=192 Identities=19% Similarity=0.309 Sum_probs=159.0
Q ss_pred ECCEEEEEccc--CCC--CCCCeEEEEeCCCCcEEeC--CCCCCCccceEEEEEC-CEEEEEcCcCCC------CccceE
Q psy11771 141 FDGLLYACGGY--DGA--SCLSSMERYDPLTGVWSSC--PAMTTRRRYCRIAVVE-NCLYALGGFDST------NYQASV 207 (347)
Q Consensus 141 ~~~~lyv~GG~--~~~--~~~~~~~~~d~~~~~W~~~--~~~~~~r~~~~~~~~~-~~lyv~GG~~~~------~~~~~~ 207 (347)
..+.|++|||. ++. ...++++.||..+++|+++ +..|.||+.|.++++. |.+|++||.-.+ ..-++.
T Consensus 77 ekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~ 156 (521)
T KOG1230|consen 77 EKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDL 156 (521)
T ss_pred CcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhe
Confidence 35689999997 433 3358899999999999987 4567889999988884 899999996433 224789
Q ss_pred EEEeCCCCcEEecC--CCCCCCcceEEEEECCEEEEEcccCCC----ccCCeEEEEECCCCeEEEcCC---CCCCCcceE
Q psy11771 208 ERLDPRMGKWAPVP--SMSSRRSSCGVAALDGAIYCVGGNDGT----MCMSSGERFNVRRNSWEPIAP---MLSRRSTHE 278 (347)
Q Consensus 208 ~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~ 278 (347)
|.||..+++|+++. .-|.+|.+|-++++..+|+++||+... .+.+++|+||+.+.+|+++.+ -|.+|++|.
T Consensus 157 W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq 236 (521)
T KOG1230|consen 157 WLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQ 236 (521)
T ss_pred eeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcce
Confidence 99999999999985 578999999999999999999998433 357999999999999999964 478999999
Q ss_pred EEEE-CCEEEEEeccCC---------CCCccEEEEEeCCC-----CcEEEccC---CCCCcceeEEEEEcCC
Q psy11771 279 VVNI-EGYLLTMGGNDG---------SSSLNSVEKYDPKL-----NKWQLLTP---MLTRRSSIGAAVLETL 332 (347)
Q Consensus 279 ~~~~-~~~lyv~GG~~~---------~~~~~~v~~yd~~~-----~~W~~~~~---~~~~r~~~~~~~~~~~ 332 (347)
+.+. +|.|||.||+.. ....++++..+|.+ -.|.++.+ -|.||+++++++-.++
T Consensus 237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~ 308 (521)
T KOG1230|consen 237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNH 308 (521)
T ss_pred EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCC
Confidence 9988 999999999752 22456899999988 67888876 5899999999876653
No 26
>KOG4152|consensus
Probab=99.85 E-value=6.6e-20 Score=164.00 Aligned_cols=163 Identities=19% Similarity=0.269 Sum_probs=132.8
Q ss_pred CeEEEEEEEEECCEEEEEcccCCC---------CCCCeEEEEeCCCCc----EEeC---CCCCCCccceEEEEE------
Q psy11771 131 PYVFAIGTCSFDGLLYACGGYDGA---------SCLSSMERYDPLTGV----WSSC---PAMTTRRRYCRIAVV------ 188 (347)
Q Consensus 131 ~~~~~~~~~~~~~~lyv~GG~~~~---------~~~~~~~~~d~~~~~----W~~~---~~~~~~r~~~~~~~~------ 188 (347)
-.+.+|+..+++++-|+|||..++ .+++++++.+..... |... +.+|.+|..|.++.+
T Consensus 135 CPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~ 214 (830)
T KOG4152|consen 135 CPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSK 214 (830)
T ss_pred CCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCC
Confidence 344567999999999999998322 457889988877543 8653 468899999998877
Q ss_pred CCEEEEEcCcCCCCccceEEEEeCCCCcEEecC---CCCCCCcceEEEEECCEEEEEcccCCC--------------ccC
Q psy11771 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVP---SMSSRRSSCGVAALDGAIYCVGGNDGT--------------MCM 251 (347)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~--------------~~~ 251 (347)
..++||+||..+. .+.++|..|+.+-+|.+.. ..|.+|.-|+++.+++++||+||+... .+.
T Consensus 215 ~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCT 293 (830)
T KOG4152|consen 215 KSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCT 293 (830)
T ss_pred cceEEEEcccccc-cccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeec
Confidence 3489999997654 4789999999999998864 467889999999999999999997311 245
Q ss_pred CeEEEEECCCCeEEEcC-------CCCCCCcceEEEEECCEEEEEeccCC
Q psy11771 252 SSGERFNVRRNSWEPIA-------PMLSRRSTHEVVNIEGYLLTMGGNDG 294 (347)
Q Consensus 252 ~~v~~yd~~~~~W~~~~-------~~~~~~~~~~~~~~~~~lyv~GG~~~ 294 (347)
+++-++++.+..|+.+- ..|.+|.+|.++.++.+||+-.|.++
T Consensus 294 ssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 294 SSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred cceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccch
Confidence 67889999999999872 47899999999999999999998764
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.65 E-value=8.3e-15 Score=126.78 Aligned_cols=196 Identities=16% Similarity=0.247 Sum_probs=143.0
Q ss_pred EEEEECCEEEEEcccCCC-----CCCCeEEEEeCCCCcEEeCCC-CCCCccceEEEEECC-EEEEEcCcCC---------
Q psy11771 137 GTCSFDGLLYACGGYDGA-----SCLSSMERYDPLTGVWSSCPA-MTTRRRYCRIAVVEN-CLYALGGFDS--------- 200 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~-----~~~~~~~~~d~~~~~W~~~~~-~~~~r~~~~~~~~~~-~lyv~GG~~~--------- 200 (347)
..++++++||+|||.... ...+++++|||.+++|+++.. .|.....+.++.+++ +||++||.+.
T Consensus 87 ~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~d 166 (381)
T COG3055 87 VAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFED 166 (381)
T ss_pred hheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHh
Confidence 688899999999998422 235789999999999999875 455577778888877 9999999431
Q ss_pred -------------------------CCccceEEEEeCCCCcEEecCCCC-CCCcceEEEEECCEEEEEcccCCCc-cCCe
Q psy11771 201 -------------------------TNYQASVERLDPRMGKWAPVPSMS-SRRSSCGVAALDGAIYCVGGNDGTM-CMSS 253 (347)
Q Consensus 201 -------------------------~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~ 253 (347)
......+..|+|.+++|+.+...| .+++..+.+.-++++.++-|.-... ....
T Consensus 167 v~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~ 246 (381)
T COG3055 167 VGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAE 246 (381)
T ss_pred hhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccc
Confidence 023567889999999999999777 5666655555578899998875443 3344
Q ss_pred EEEEECC--CCeEEEcCCCCCCCcce-------EEEEECCEEEEEeccCCC-------------------CCccEEEEEe
Q psy11771 254 GERFNVR--RNSWEPIAPMLSRRSTH-------EVVNIEGYLLTMGGNDGS-------------------SSLNSVEKYD 305 (347)
Q Consensus 254 v~~yd~~--~~~W~~~~~~~~~~~~~-------~~~~~~~~lyv~GG~~~~-------------------~~~~~v~~yd 305 (347)
+..++.. .-+|..++++|.+.+.- -.-..++.+.+.||.+-. ...++|+.+|
T Consensus 247 ~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d 326 (381)
T COG3055 247 VKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD 326 (381)
T ss_pred eeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc
Confidence 5566554 55899999888654432 112347788888884310 1235788888
Q ss_pred CCCCcEEEccCCCCCcceeEEEEEcCCCc
Q psy11771 306 PKLNKWQLLTPMLTRRSSIGAAVLETLNI 334 (347)
Q Consensus 306 ~~~~~W~~~~~~~~~r~~~~~~~~~~~~~ 334 (347)
.+.|+.+.+||.++.+..++..++.-.
T Consensus 327 --~g~Wk~~GeLp~~l~YG~s~~~nn~vl 353 (381)
T COG3055 327 --NGSWKIVGELPQGLAYGVSLSYNNKVL 353 (381)
T ss_pred --CCceeeecccCCCccceEEEecCCcEE
Confidence 999999999999988888776665433
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.60 E-value=2.8e-14 Score=123.55 Aligned_cols=182 Identities=18% Similarity=0.275 Sum_probs=139.9
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCC--CCcEEeCCCCC-CCccceEEEEECCEEEEEcCcCCC-----CccceEE
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPL--TGVWSSCPAMT-TRRRYCRIAVVENCLYALGGFDST-----NYQASVE 208 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~-----~~~~~~~ 208 (347)
+.+..++.+||-=|..+ .+.+..|.. ...|++++..| .+|.....+.++++||||||.... ...++++
T Consensus 41 ~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y 116 (381)
T COG3055 41 AGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAY 116 (381)
T ss_pred ccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeE
Confidence 56677889999877443 456666664 45799999887 678888899999999999998654 3468999
Q ss_pred EEeCCCCcEEecCC-CCCCCcceEEEEECC-EEEEEcccCCC----------------------------------ccCC
Q psy11771 209 RLDPRMGKWAPVPS-MSSRRSSCGVAALDG-AIYCVGGNDGT----------------------------------MCMS 252 (347)
Q Consensus 209 ~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~----------------------------------~~~~ 252 (347)
+|||.+++|+.+.. .|.....++++.+++ +||++||.+.. ....
T Consensus 117 ~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ 196 (381)
T COG3055 117 RYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNK 196 (381)
T ss_pred EecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccc
Confidence 99999999999864 577777888889887 99999997521 1235
Q ss_pred eEEEEECCCCeEEEcCCCC-CCCcceEEEEECCEEEEEeccCCC-CCccEEEEEeCC--CCcEEEccCCCCCcc
Q psy11771 253 SGERFNVRRNSWEPIAPML-SRRSTHEVVNIEGYLLTMGGNDGS-SSLNSVEKYDPK--LNKWQLLTPMLTRRS 322 (347)
Q Consensus 253 ~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~--~~~W~~~~~~~~~r~ 322 (347)
.+..|||.+++|+.+...| .++++.+.+.-++++.+|-|+-.. -+...+..++.. .-+|..++++|.+.+
T Consensus 197 ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~ 270 (381)
T COG3055 197 EVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIG 270 (381)
T ss_pred cccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCC
Confidence 6889999999999999666 566775555558889999886543 334567777765 457999998876654
No 29
>KOG2437|consensus
Probab=99.44 E-value=1.4e-13 Score=123.57 Aligned_cols=177 Identities=19% Similarity=0.247 Sum_probs=135.6
Q ss_pred EEEEEEEEECC--EEEEEcccCCCCCCCeEEEEeCCCCcEEeCC---CCCCCccceEEEEECC--EEEEEcCcCCC----
Q psy11771 133 VFAIGTCSFDG--LLYACGGYDGASCLSSMERYDPLTGVWSSCP---AMTTRRRYCRIAVVEN--CLYALGGFDST---- 201 (347)
Q Consensus 133 ~~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~r~~~~~~~~~~--~lyv~GG~~~~---- 201 (347)
+-+|.++.-.+ .||+.||.++...+.++|.|+-..+.|.... ..|..|..|.++.... ++|+.|-+-+.
T Consensus 261 RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~ 340 (723)
T KOG2437|consen 261 RGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRN 340 (723)
T ss_pred cCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccccc
Confidence 34556666655 8999999999999999999999999998764 4788999999887755 99999987443
Q ss_pred --CccceEEEEeCCCCcEEecC------CCCCCCcceEEEEECCE--EEEEcccCC--C-ccCCeEEEEECCCCeEEEcC
Q psy11771 202 --NYQASVERLDPRMGKWAPVP------SMSSRRSSCGVAALDGA--IYCVGGNDG--T-MCMSSGERFNVRRNSWEPIA 268 (347)
Q Consensus 202 --~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~--iyv~GG~~~--~-~~~~~v~~yd~~~~~W~~~~ 268 (347)
..-+++|+||..++.|..+. .-|.....|.+++.+++ |||+||... + ....-+|.||.....|..+.
T Consensus 341 ~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 341 SKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred ccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHH
Confidence 23578999999999999885 24677788999999877 999999732 2 34567999999999998774
Q ss_pred CC----------CCCCcceEEEEE--CCEEEEEeccCCCCCccEEEEEeCCCC
Q psy11771 269 PM----------LSRRSTHEVVNI--EGYLLTMGGNDGSSSLNSVEKYDPKLN 309 (347)
Q Consensus 269 ~~----------~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 309 (347)
.- ...|.+|.+-.+ +.++|++||......++-..+||....
T Consensus 421 e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E 473 (723)
T KOG2437|consen 421 EDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSE 473 (723)
T ss_pred HHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccc
Confidence 21 134555555444 678999999765555555667765543
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.40 E-value=8e-13 Score=84.67 Aligned_cols=49 Identities=41% Similarity=0.715 Sum_probs=45.6
Q ss_pred CCcceEEEEECCEEEEEeccCC-CCCccEEEEEeCCCCcEEEccCCCCCc
Q psy11771 273 RRSTHEVVNIEGYLLTMGGNDG-SSSLNSVEKYDPKLNKWQLLTPMLTRR 321 (347)
Q Consensus 273 ~~~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r 321 (347)
+|..|++++++++|||+||..+ ....+++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 5889999999999999999887 677899999999999999999999987
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.32 E-value=5e-12 Score=80.94 Aligned_cols=49 Identities=31% Similarity=0.594 Sum_probs=45.5
Q ss_pred CCcceEEEEECCEEEEEcccCC-CccCCeEEEEECCCCeEEEcCCCCCCC
Q psy11771 226 RRSSCGVAALDGAIYCVGGNDG-TMCMSSGERFNVRRNSWEPIAPMLSRR 274 (347)
Q Consensus 226 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~~ 274 (347)
+|..+++++++++||++||... ....+++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 5788999999999999999977 677899999999999999999999886
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.20 E-value=3e-11 Score=76.27 Aligned_cols=46 Identities=43% Similarity=0.749 Sum_probs=41.9
Q ss_pred CCcceEEEEECCEEEEEeccCC-CCCccEEEEEeCCCCcEEEccCCC
Q psy11771 273 RRSTHEVVNIEGYLLTMGGNDG-SSSLNSVEKYDPKLNKWQLLTPML 318 (347)
Q Consensus 273 ~~~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~ 318 (347)
+|..|++++++++||++||.++ ....+++++||+++++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5889999999999999999887 677899999999999999999886
No 33
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.14 E-value=1.1e-10 Score=74.22 Aligned_cols=47 Identities=32% Similarity=0.498 Sum_probs=43.1
Q ss_pred CCEEEEEeccC--CCCCccEEEEEeCCCCcEEEccCCCCCcceeEEEEE
Q psy11771 283 EGYLLTMGGND--GSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVL 329 (347)
Q Consensus 283 ~~~lyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 329 (347)
+++|||+||.+ .....+++++||+.+++|++++++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 58999999988 566789999999999999999999999999999874
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.12 E-value=8.9e-11 Score=74.09 Aligned_cols=46 Identities=33% Similarity=0.609 Sum_probs=42.0
Q ss_pred CCcceEEEEECCEEEEEcccCC-CccCCeEEEEECCCCeEEEcCCCC
Q psy11771 226 RRSSCGVAALDGAIYCVGGNDG-TMCMSSGERFNVRRNSWEPIAPML 271 (347)
Q Consensus 226 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~ 271 (347)
+|..+++++++++||++||.+. ....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5789999999999999999987 678899999999999999999886
No 35
>KOG2437|consensus
Probab=99.09 E-value=1.2e-10 Score=104.99 Aligned_cols=140 Identities=17% Similarity=0.265 Sum_probs=115.1
Q ss_pred CCCccceEEEEECC--EEEEEcCcCCCCccceEEEEeCCCCcEEecC---CCCCCCcceEEEEEC--CEEEEEcccCCC-
Q psy11771 177 TTRRRYCRIAVVEN--CLYALGGFDSTNYQASVERLDPRMGKWAPVP---SMSSRRSSCGVAALD--GAIYCVGGNDGT- 248 (347)
Q Consensus 177 ~~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~--~~iyv~GG~~~~- 248 (347)
|..|.+|.++...+ .||+.||.++...+.+.|.|+...+.|+.+. ..|-.|.+|-++.-- .++|++|-+-+.
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 56789999988755 9999999999888999999999999999885 478899999999864 599999976332
Q ss_pred -----ccCCeEEEEECCCCeEEEcC------CCCCCCcceEEEEECCE--EEEEeccCC--C-CCccEEEEEeCCCCcEE
Q psy11771 249 -----MCMSSGERFNVRRNSWEPIA------PMLSRRSTHEVVNIEGY--LLTMGGNDG--S-SSLNSVEKYDPKLNKWQ 312 (347)
Q Consensus 249 -----~~~~~v~~yd~~~~~W~~~~------~~~~~~~~~~~~~~~~~--lyv~GG~~~--~-~~~~~v~~yd~~~~~W~ 312 (347)
...+++|+||..++.|.-+. .-|...+.|.+++.+++ |||+||..- . .....+++||.+...|+
T Consensus 338 ~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~ 417 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWK 417 (723)
T ss_pred cccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHH
Confidence 34578999999999999875 24567788999999877 999999642 2 34567999999999998
Q ss_pred EccC
Q psy11771 313 LLTP 316 (347)
Q Consensus 313 ~~~~ 316 (347)
.+..
T Consensus 418 ~l~e 421 (723)
T KOG2437|consen 418 LLRE 421 (723)
T ss_pred HHHH
Confidence 7653
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.04 E-value=7e-10 Score=70.51 Aligned_cols=47 Identities=28% Similarity=0.504 Sum_probs=43.0
Q ss_pred CCEEEEEcccC--CCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE
Q psy11771 236 DGAIYCVGGND--GTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI 282 (347)
Q Consensus 236 ~~~iyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 282 (347)
+++|||+||.+ .....+++++||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998 567789999999999999999999999999999864
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.04 E-value=7.5e-10 Score=70.36 Aligned_cols=46 Identities=37% Similarity=0.632 Sum_probs=40.9
Q ss_pred CCcceEEEEECCEEEEEecc---CCCCCccEEEEEeCCCCcEEEccCCC
Q psy11771 273 RRSTHEVVNIEGYLLTMGGN---DGSSSLNSVEKYDPKLNKWQLLTPML 318 (347)
Q Consensus 273 ~~~~~~~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~~~ 318 (347)
+|..|++++++++||++||+ ......+++++||+++++|+.++.|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 44566789999999999999998764
No 38
>smart00612 Kelch Kelch domain.
Probab=99.03 E-value=4.7e-10 Score=70.67 Aligned_cols=47 Identities=47% Similarity=0.735 Sum_probs=42.4
Q ss_pred EEEEEeccCCCCCccEEEEEeCCCCcEEEccCCCCCcceeEEEEEcC
Q psy11771 285 YLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLET 331 (347)
Q Consensus 285 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 331 (347)
+||++||.++....+++++||+++++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998765667899999999999999999999999999998874
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.98 E-value=5.8e-10 Score=70.99 Aligned_cols=47 Identities=34% Similarity=0.562 Sum_probs=31.2
Q ss_pred CCcceEEEEE-CCEEEEEeccCCC-CCccEEEEEeCCCCcEEEccCCCC
Q psy11771 273 RRSTHEVVNI-EGYLLTMGGNDGS-SSLNSVEKYDPKLNKWQLLTPMLT 319 (347)
Q Consensus 273 ~~~~~~~~~~-~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~ 319 (347)
+|.+|+++.+ +++|||+||.+.. ..++++++||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6899999999 6999999998765 578999999999999999988773
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.96 E-value=2.7e-09 Score=67.79 Aligned_cols=46 Identities=30% Similarity=0.548 Sum_probs=41.2
Q ss_pred CCcceEEEEECCEEEEEccc---CCCccCCeEEEEECCCCeEEEcCCCC
Q psy11771 226 RRSSCGVAALDGAIYCVGGN---DGTMCMSSGERFNVRRNSWEPIAPML 271 (347)
Q Consensus 226 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~~~ 271 (347)
+|..|++++++++||++||. +.....+++++||+++++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 57899999999999999999 45567889999999999999998875
No 41
>smart00612 Kelch Kelch domain.
Probab=98.94 E-value=1.7e-09 Score=68.10 Aligned_cols=47 Identities=40% Similarity=0.685 Sum_probs=42.6
Q ss_pred EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECC
Q psy11771 238 AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEG 284 (347)
Q Consensus 238 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 284 (347)
+||++||.+.....+++++||+.+++|+.+++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998766677899999999999999999999999999988864
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.88 E-value=3.3e-09 Score=67.45 Aligned_cols=47 Identities=26% Similarity=0.504 Sum_probs=31.1
Q ss_pred CCcceEEEEE-CCEEEEEcccCCC-ccCCeEEEEECCCCeEEEcCCCCC
Q psy11771 226 RRSSCGVAAL-DGAIYCVGGNDGT-MCMSSGERFNVRRNSWEPIAPMLS 272 (347)
Q Consensus 226 ~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~ 272 (347)
+|..|+++.+ +++||++||.+.. ...+++++||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 5889999998 5899999999765 688999999999999999988773
No 43
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.71 E-value=6.2e-07 Score=76.50 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=99.5
Q ss_pred EEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCC----CcEEecC-CCCCCCcceEEEE
Q psy11771 160 MERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRM----GKWAPVP-SMSSRRSSCGVAA 234 (347)
Q Consensus 160 ~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~-~~p~~r~~~~~~~ 234 (347)
-..||+.+++++.+...-...+...+..-+|++.+.||.... .+.+..|++.+ ..|.+.+ .|..+|.+.++..
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 456999999998876433333333344458899999997653 35677788765 5798876 5999999999888
Q ss_pred E-CCEEEEEcccCCCccCCeEEEEECCC-----CeEEEcCC----CCCCCcceEEEEECCEEEEEeccCCCCCccEEEEE
Q psy11771 235 L-DGAIYCVGGNDGTMCMSSGERFNVRR-----NSWEPIAP----MLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKY 304 (347)
Q Consensus 235 ~-~~~iyv~GG~~~~~~~~~v~~yd~~~-----~~W~~~~~----~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~y 304 (347)
+ +|+++|+||... .+.+.+.+.. ..|..+.. .+...+-+..+.=+|+||+++.. ....|
T Consensus 126 L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i~ 194 (243)
T PF07250_consen 126 LPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSIIY 194 (243)
T ss_pred CCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEEE
Confidence 7 789999999862 2334343321 12222221 12222223333339999999874 46689
Q ss_pred eCCCCcE-EEccCCCCC
Q psy11771 305 DPKLNKW-QLLTPMLTR 320 (347)
Q Consensus 305 d~~~~~W-~~~~~~~~~ 320 (347)
|+.++++ +.++.+|..
T Consensus 195 d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 195 DYKTNTVVRTLPDLPGG 211 (243)
T ss_pred eCCCCeEEeeCCCCCCC
Confidence 9999987 788988863
No 44
>PLN02772 guanylate kinase
Probab=98.69 E-value=1.7e-07 Score=84.85 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=68.0
Q ss_pred CCCCcceEEEEECCEEEEEcccCCCc-cCCeEEEEECCCCeEEEc---CCCCCCCcceEEEEE-CCEEEEEeccCCCCCc
Q psy11771 224 SSRRSSCGVAALDGAIYCVGGNDGTM-CMSSGERFNVRRNSWEPI---APMLSRRSTHEVVNI-EGYLLTMGGNDGSSSL 298 (347)
Q Consensus 224 p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~---~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~ 298 (347)
..++..++++.+++++|++||.+... ..+.+++||..+.+|... ...|.+|.+|++|++ +++|+|+++.... .
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~ 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--D 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--c
Confidence 35788899999999999999987765 678999999999999876 478999999999999 6899999965433 2
Q ss_pred cEEEEEeCCC
Q psy11771 299 NSVEKYDPKL 308 (347)
Q Consensus 299 ~~v~~yd~~~ 308 (347)
+++|.....|
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 4567665544
No 45
>PLN02772 guanylate kinase
Probab=98.64 E-value=3e-07 Score=83.21 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=68.6
Q ss_pred CCCccceEEEEECCEEEEEcCcCCCC-ccceEEEEeCCCCcEEecC---CCCCCCcceEEEEE-CCEEEEEcccCCCccC
Q psy11771 177 TTRRRYCRIAVVENCLYALGGFDSTN-YQASVERLDPRMGKWAPVP---SMSSRRSSCGVAAL-DGAIYCVGGNDGTMCM 251 (347)
Q Consensus 177 ~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 251 (347)
..++..++++.+++++||+||.+... ..+.+++||+.+++|.... +.|.+|.+|+++++ +++|+|+++.....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 35788899999999999999987765 6789999999999998764 68999999999998 58999998765443
Q ss_pred CeEEEEECCC
Q psy11771 252 SSGERFNVRR 261 (347)
Q Consensus 252 ~~v~~yd~~~ 261 (347)
.++|.+...+
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 6677665554
No 46
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.54 E-value=2.1e-05 Score=67.60 Aligned_cols=159 Identities=13% Similarity=0.179 Sum_probs=97.7
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCcc---c--eEEEE--E-CC-EEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCC-C
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRR---Y--CRIAV--V-EN-CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSR-R 227 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~---~--~~~~~--~-~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r 227 (347)
..+.++||.|++|..+|+.+.++. . ++... . +. ||..+...........+++|+..++.|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 468999999999999986554211 1 11111 1 11 555554321112345789999999999998743321 1
Q ss_pred cceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCc----ceEEEEECCEEEEEeccCCCCCccEEEE
Q psy11771 228 SSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRS----THEVVNIEGYLLTMGGNDGSSSLNSVEK 303 (347)
Q Consensus 228 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~----~~~~~~~~~~lyv~GG~~~~~~~~~v~~ 303 (347)
.....+.++|.||-+...........+..||..+++|+..-++|.... ...++.++|+|.++....... .-++|+
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~IWv 172 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTN-NFDLWV 172 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCC-cEEEEE
Confidence 122267789999888754321211268999999999995223343322 345677899999887643211 246777
Q ss_pred Ee-CCCCcEEEccCC
Q psy11771 304 YD-PKLNKWQLLTPM 317 (347)
Q Consensus 304 yd-~~~~~W~~~~~~ 317 (347)
.+ ....+|+++-.+
T Consensus 173 l~d~~~~~W~k~~~i 187 (230)
T TIGR01640 173 LNDAGKQEWSKLFTV 187 (230)
T ss_pred ECCCCCCceeEEEEE
Confidence 75 446679976543
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.54 E-value=2.2e-07 Score=56.71 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=35.3
Q ss_pred CCCCCcceEEEEECCEEEEEeccC--CCCCccEEEEEeCCCC
Q psy11771 270 MLSRRSTHEVVNIEGYLLTMGGND--GSSSLNSVEKYDPKLN 309 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~~~ 309 (347)
+|.+|..|++++++++|||+||.+ .....+++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999988 4667899999998763
No 48
>PF13854 Kelch_5: Kelch motif
Probab=98.47 E-value=5.1e-07 Score=55.07 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=35.0
Q ss_pred CCCCCcceEEEEECCEEEEEcccC--CCccCCeEEEEECCC
Q psy11771 223 MSSRRSSCGVAALDGAIYCVGGND--GTMCMSSGERFNVRR 261 (347)
Q Consensus 223 ~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~~ 261 (347)
+|.+|..|++++++++||++||.+ .....+++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 488999999999999999999998 466789999999876
No 49
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.14 E-value=0.00032 Score=60.29 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=91.0
Q ss_pred CeEEEEeCCCCcEEeCCCCCCC-ccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEe-cCCCCCCC----cceE
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTR-RRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAP-VPSMSSRR----SSCG 231 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r----~~~~ 231 (347)
..+++|+..+++|+.+...+.. ......+.++|.+|-+...........+..||..+++|+. ++ +|..+ ....
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~ 148 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLS 148 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccceE
Confidence 5689999999999988643321 1112266779999988743321212368999999999995 54 34332 2456
Q ss_pred EEEECCEEEEEcccCCCccCCeEEEEE-CCCCeEEEcCCCC---CC--Cc--ceEEEEECCEEEEEeccCCCCCccEEEE
Q psy11771 232 VAALDGAIYCVGGNDGTMCMSSGERFN-VRRNSWEPIAPML---SR--RS--THEVVNIEGYLLTMGGNDGSSSLNSVEK 303 (347)
Q Consensus 232 ~~~~~~~iyv~GG~~~~~~~~~v~~yd-~~~~~W~~~~~~~---~~--~~--~~~~~~~~~~lyv~GG~~~~~~~~~v~~ 303 (347)
++.++|+|.++....... .-++|+.+ ....+|++.-.++ .+ +. ....+..+++|++..+.. ....+..
T Consensus 149 L~~~~G~L~~v~~~~~~~-~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~ 224 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTN-NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFY 224 (230)
T ss_pred EEEECCEEEEEEecCCCC-cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEE
Confidence 778899998887643221 14677775 4456798763322 11 11 123344578888876531 1124999
Q ss_pred EeCCCC
Q psy11771 304 YDPKLN 309 (347)
Q Consensus 304 yd~~~~ 309 (347)
||+++|
T Consensus 225 y~~~~~ 230 (230)
T TIGR01640 225 YNVGEN 230 (230)
T ss_pred EeccCC
Confidence 999875
No 50
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.87 E-value=4.4e-06 Score=62.04 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=36.0
Q ss_pred CCccCChHHHHHHHHHHHHhc--------cccccccccCCCChHHHHHhc
Q psy11771 43 RPAVNSSCGNYILPTAWVSVA--------LQLLRHVKLPLLARDFLMNSV 84 (347)
Q Consensus 43 ~~~v~~E~~v~~~~~~Wv~~~--------~~ll~~vr~~~l~~~~l~~~l 84 (347)
+.++.+|++||+++++|++++ ++|+++|||+++++.+|.+.+
T Consensus 53 ~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 53 DLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp S--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHHHHHCC
T ss_pred ccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHHHHHHH
Confidence 445789999999999999999 899999999999999998765
No 51
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.85 E-value=0.0013 Score=59.98 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=82.4
Q ss_pred ECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccC-----CeEEE--EEC-
Q psy11771 188 VENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCM-----SSGER--FNV- 259 (347)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~-----~~v~~--yd~- 259 (347)
.+++|+.++.. .....||+.+..-...|.++.+.....++.++++||++...-..... ..++. |++
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 48899888653 34889999999988888888877777788889999999875322111 14444 442
Q ss_pred -------CCCeEEEcCCCCCCCc-------ceEEEEE-CCEEEE-EeccCCCCCccEEEEEeCCCCcEEEccC
Q psy11771 260 -------RRNSWEPIAPMLSRRS-------THEVVNI-EGYLLT-MGGNDGSSSLNSVEKYDPKLNKWQLLTP 316 (347)
Q Consensus 260 -------~~~~W~~~~~~~~~~~-------~~~~~~~-~~~lyv-~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 316 (347)
..-.|+.+++.|.... ..+-+++ +.+|+| +-|.. ...++||+.+.+|+++++
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 2337888887664433 2334555 678888 44421 248999999999999975
No 52
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.79 E-value=0.0047 Score=52.97 Aligned_cols=150 Identities=16% Similarity=0.122 Sum_probs=87.9
Q ss_pred EEEEcccCCCCC-CCeEEEEeCCCCc--------EE---eCCCCCCCccceEEEEE----CCEEEEEcCcCCC-------
Q psy11771 145 LYACGGYDGASC-LSSMERYDPLTGV--------WS---SCPAMTTRRRYCRIAVV----ENCLYALGGFDST------- 201 (347)
Q Consensus 145 lyv~GG~~~~~~-~~~~~~~d~~~~~--------W~---~~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~------- 201 (347)
-+|-||...+.. .+++++....+.. .+ -++.+|.+|++|++.++ +.-+.+|||..-.
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 344488754433 3446655443322 11 24689999999998776 2357889996311
Q ss_pred -------CccceEEEEeCCCCcEE--ecCCCCCCCcceEEEEECCEEEEEcccCC--CccCCeEEEEECC--CC-eEEEc
Q psy11771 202 -------NYQASVERLDPRMGKWA--PVPSMSSRRSSCGVAALDGAIYCVGGNDG--TMCMSSGERFNVR--RN-SWEPI 267 (347)
Q Consensus 202 -------~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~--~~-~W~~~ 267 (347)
.....++..|++-+..+ .+|.+..+...|.+.+-++.+|++||..- +.....+++...+ .+ -+-..
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC 200 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSC 200 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEE
Confidence 22345778888877655 35678888888888899999999999732 2223345544322 11 01111
Q ss_pred CCCCCCCcceEEEEE---CCEEEEEeccCC
Q psy11771 268 APMLSRRSTHEVVNI---EGYLLTMGGNDG 294 (347)
Q Consensus 268 ~~~~~~~~~~~~~~~---~~~lyv~GG~~~ 294 (347)
.-++.+....++.+. .++..|+||+..
T Consensus 201 ~vl~~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 201 TVLQGGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred EECCCCceEeeeeEeecCCCceEEEecccc
Confidence 123333333333222 467788899753
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.75 E-value=0.0025 Score=58.06 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=81.5
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccc-----eEEE--Ee--
Q psy11771 141 FDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQA-----SVER--LD-- 211 (347)
Q Consensus 141 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~-----~~~~--yd-- 211 (347)
.+.+|+.++.. ....+||..+..-..+|.++.+.....++.++++||++.......... ..+. |+
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 68899988663 348899999999888888887776667778899999998764331111 4444 34
Q ss_pred ------CCCCcEEecCCCCCCCc-------ceEEEEE-CCEEEE-EcccCCCccCCeEEEEECCCCeEEEcCC
Q psy11771 212 ------PRMGKWAPVPSMSSRRS-------SCGVAAL-DGAIYC-VGGNDGTMCMSSGERFNVRRNSWEPIAP 269 (347)
Q Consensus 212 ------~~~~~W~~~~~~p~~r~-------~~~~~~~-~~~iyv-~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 269 (347)
.....|+.+|+.|-.+. -.+-+++ +..|+| +-|.. .-.++||.++.+|+++..
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 22346888877553333 2334455 667888 43321 358999999999999985
No 54
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.75 E-value=0.00033 Score=59.94 Aligned_cols=87 Identities=22% Similarity=0.355 Sum_probs=66.1
Q ss_pred ceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCC----CeEEEcC-CCCCCCcceEE
Q psy11771 205 ASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRR----NSWEPIA-PMLSRRSTHEV 279 (347)
Q Consensus 205 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~-~~~~~~~~~~~ 279 (347)
.....||+.+++++.+......-+...+..-+|++.++||.... .+.+..|++.+ ..|.... .|..+|.+.++
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 33567999999999887544443333344458999999998653 35677788765 5798876 58999999999
Q ss_pred EEE-CCEEEEEeccC
Q psy11771 280 VNI-EGYLLTMGGND 293 (347)
Q Consensus 280 ~~~-~~~lyv~GG~~ 293 (347)
..+ +|+++|+||..
T Consensus 124 ~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSN 138 (243)
T ss_pred eECCCCCEEEEeCcC
Confidence 988 89999999976
No 55
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.40 E-value=0.00016 Score=53.21 Aligned_cols=43 Identities=30% Similarity=0.525 Sum_probs=36.0
Q ss_pred CCCCC--ccCChHHHHHHHHHHHHhc-------cccccccccCCCChHHHHH
Q psy11771 40 LYGRP--AVNSSCGNYILPTAWVSVA-------LQLLRHVKLPLLARDFLMN 82 (347)
Q Consensus 40 l~~~~--~v~~E~~v~~~~~~Wv~~~-------~~ll~~vr~~~l~~~~l~~ 82 (347)
|++++ .+.+|+++|+++.+|++++ ..++++|||+++++.++..
T Consensus 48 iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 48 LLSSDDLNVPSEEEVFEAVLRWVKHDPERRRHLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HhCcccCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhCCCCCCCHHHHHh
Confidence 44444 3678999999999999999 5799999999999998754
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.18 E-value=0.061 Score=50.17 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=90.4
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCCCC--------CCccceEEEEECCEEEEEcCcCCCCccce
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPAMT--------TRRRYCRIAVVENCLYALGGFDSTNYQAS 206 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~--------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 206 (347)
+.++.+++||+.+.. ..+.++|..+.+ |+.-..-. ..+...+.+..++++|+.+. ...
T Consensus 64 sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------~g~ 131 (394)
T PRK11138 64 HPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------KGQ 131 (394)
T ss_pred ccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------CCE
Confidence 446679999988652 368899987665 86422110 11223345667889998543 246
Q ss_pred EEEEeCCCC--cEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCe--EEEcCCCCCC--CcceEEE
Q psy11771 207 VERLDPRMG--KWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNS--WEPIAPMLSR--RSTHEVV 280 (347)
Q Consensus 207 ~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~--~~~~~~~ 280 (347)
++++|..+. .|+.-.+- . ...+-++.++.+|+..+. ..++.+|+++++ |+.-...+.. +...+-+
T Consensus 132 l~ald~~tG~~~W~~~~~~--~-~~ssP~v~~~~v~v~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~ 202 (394)
T PRK11138 132 VYALNAEDGEVAWQTKVAG--E-ALSRPVVSDGLVLVHTSN------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPA 202 (394)
T ss_pred EEEEECCCCCCcccccCCC--c-eecCCEEECCEEEEECCC------CEEEEEEccCCCEeeeecCCCCcccccCCCCCE
Confidence 899998765 58764321 1 122335568888875442 479999998764 8775433221 1122334
Q ss_pred EECCEEEEEeccCCCCCccEEEEEeCCCCc--EEE
Q psy11771 281 NIEGYLLTMGGNDGSSSLNSVEKYDPKLNK--WQL 313 (347)
Q Consensus 281 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~ 313 (347)
+.++.+|+..+. ..+.++|+++.+ |+.
T Consensus 203 v~~~~v~~~~~~------g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 203 TAFGGAIVGGDN------GRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred EECCEEEEEcCC------CEEEEEEccCChhhhee
Confidence 457777774432 357888887664 764
No 57
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=97.09 E-value=0.094 Score=43.67 Aligned_cols=143 Identities=13% Similarity=0.205 Sum_probs=79.7
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcE--EeC----CCCCCCccceEEEEE-CCEEEEEcCcCCCCccceEEE
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVW--SSC----PAMTTRRRYCRIAVV-ENCLYALGGFDSTNYQASVER 209 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W--~~~----~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~ 209 (347)
++...++++|+|-| +.+|+++...... +.+ +.+|. ....+.... ++++|+|-| +..|+
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-------~~yw~ 75 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-------DKYWV 75 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-------CEEEE
Confidence 45556699999988 5678887652111 111 11221 122222222 389999987 67888
Q ss_pred EeCCCCcEEe---cC--CCCC--CCcceEEEEE-CCEEEEEcccCCCccCCeEEEEECCCCeEEEc---------CCCCC
Q psy11771 210 LDPRMGKWAP---VP--SMSS--RRSSCGVAAL-DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPI---------APMLS 272 (347)
Q Consensus 210 yd~~~~~W~~---~~--~~p~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---------~~~~~ 272 (347)
|+..+..+.. +. ..+. .....+...- ++++|++.| +..++||..+++...- ..+|.
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~ 148 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPD 148 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCC
Confidence 8866422211 11 1121 1122222222 689999988 6788888766543211 11222
Q ss_pred CCcceEEEEE-CCEEEEEeccCCCCCccEEEEEeCCCCc
Q psy11771 273 RRSTHEVVNI-EGYLLTMGGNDGSSSLNSVEKYDPKLNK 310 (347)
Q Consensus 273 ~~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 310 (347)
. . -++... ++++|+|-| +..+.||..+.+
T Consensus 149 ~-i-daa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 149 K-V-DAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred C-c-ceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 1 2 233334 489999988 479999988765
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.09 E-value=0.082 Score=49.32 Aligned_cols=150 Identities=15% Similarity=0.236 Sum_probs=86.2
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCC
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRM 214 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~ 214 (347)
+.++.+++||+.+. ...++++|..+.+ |+.-.+ .. ...+.+..++.+|+..+ ...++.+|+.+
T Consensus 115 ~~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~------~g~l~ald~~t 179 (394)
T PRK11138 115 GVTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTS------NGMLQALNESD 179 (394)
T ss_pred ccEEECCEEEEEcC------CCEEEEEECCCCCCcccccCC--Cc-eecCCEEECCEEEEECC------CCEEEEEEccC
Confidence 35667888887543 2468999987764 865321 11 12223455888888543 24689999987
Q ss_pred Cc--EEecCCCCC--CCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCC--eEEEcCCCCCC--------CcceEEE
Q psy11771 215 GK--WAPVPSMSS--RRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRN--SWEPIAPMLSR--------RSTHEVV 280 (347)
Q Consensus 215 ~~--W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~--------~~~~~~~ 280 (347)
.+ |+.-...|. .+...+-++.++.+|+..+. ..++.+|+++. .|+.-...+.. ....+-+
T Consensus 180 G~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 180 GAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred CCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 65 877543332 12223334567777775442 46788888876 48653222211 1112334
Q ss_pred EECCEEEEEeccCCCCCccEEEEEeCCCCc--EEE
Q psy11771 281 NIEGYLLTMGGNDGSSSLNSVEKYDPKLNK--WQL 313 (347)
Q Consensus 281 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~ 313 (347)
+.++.+|+.+.. ..++++|+++.+ |+.
T Consensus 254 v~~~~vy~~~~~------g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 254 VVGGVVYALAYN------GNLVALDLRSGQIVWKR 282 (394)
T ss_pred EECCEEEEEEcC------CeEEEEECCCCCEEEee
Confidence 568888876531 256777766553 654
No 59
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.94 E-value=0.024 Score=49.91 Aligned_cols=119 Identities=12% Similarity=0.189 Sum_probs=72.0
Q ss_pred EEEcCcCCCC--ccceEEEEeCCCCcEEecCCCCCCCcceEEEEE-CCEEEEEcccCCCc-cCCeEEEEECCCCeEEEcC
Q psy11771 193 YALGGFDSTN--YQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL-DGAIYCVGGNDGTM-CMSSGERFNVRRNSWEPIA 268 (347)
Q Consensus 193 yv~GG~~~~~--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~ 268 (347)
||-|-+...+ ....+-.||+.+.+|..+..--.+. -.++.-. ++++|+.|-++-.+ ....+-.||.++.+|+.++
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 4444343333 3577888999999999987542222 2333433 67888888654333 4567889999999999887
Q ss_pred C-----CCCCCcceEEEEE-CCEEEEEeccCCCCCccEEEEEeCCCCcEEEccC
Q psy11771 269 P-----MLSRRSTHEVVNI-EGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTP 316 (347)
Q Consensus 269 ~-----~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 316 (347)
. +|.+......... .+.+++.|..... ...+..| ...+|..+..
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g--~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRSANG--STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEeceecCC--CceEEEE--cCCceEeccc
Confidence 6 2333221111112 3467777654221 3456666 4667888765
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.87 E-value=0.24 Score=42.28 Aligned_cols=150 Identities=19% Similarity=0.210 Sum_probs=91.8
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCC
Q psy11771 138 TCSFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMG 215 (347)
Q Consensus 138 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~ 215 (347)
.+..++.+|+..+ ...++++|+.+.+ |+.-. +.+... .....++.+|+..+ ...++.+|..+.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~-~~~~~~~~v~v~~~------~~~l~~~d~~tG 96 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISG-APVVDGGRVYVGTS------DGSLYALDAKTG 96 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGS-GEEEETTEEEEEET------TSEEEEEETTTS
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccc-eeeecccccccccc------eeeeEecccCCc
Confidence 3447888988843 3679999998875 76533 222111 14677999998863 237999997765
Q ss_pred --cEE-ecCCCCC--CCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCe--EEEcCCCCCCCc--------ceEEE
Q psy11771 216 --KWA-PVPSMSS--RRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNS--WEPIAPMLSRRS--------THEVV 280 (347)
Q Consensus 216 --~W~-~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~--------~~~~~ 280 (347)
.|+ .....+. ..........++.+|+... ...+.++|+++++ |+.-...+.... ....+
T Consensus 97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE
T ss_pred ceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE
Confidence 498 4433232 2233444555777777653 2689999998774 777554433211 12333
Q ss_pred EECCEEEEEeccCCCCCccEEEEEeCCCCc--EEEc
Q psy11771 281 NIEGYLLTMGGNDGSSSLNSVEKYDPKLNK--WQLL 314 (347)
Q Consensus 281 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 314 (347)
..++.+|+..+.. .+..+|.++++ |+..
T Consensus 171 ~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 171 ISDGRVYVSSGDG------RVVAVDLATGEKLWSKP 200 (238)
T ss_dssp CCTTEEEEECCTS------SEEEEETTTTEEEEEEC
T ss_pred EECCEEEEEcCCC------eEEEEECCCCCEEEEec
Confidence 3468888877643 25666999987 8544
No 61
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.83 E-value=0.032 Score=49.10 Aligned_cols=108 Identities=15% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCeEEEEeCCCCcEEeCCCCCCCccceEEEEE-CCEEEEEcCcCCCC-ccceEEEEeCCCCcEEecCC-----CCCCCcc
Q psy11771 157 LSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV-ENCLYALGGFDSTN-YQASVERLDPRMGKWAPVPS-----MSSRRSS 229 (347)
Q Consensus 157 ~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~-----~p~~r~~ 229 (347)
...+..||+.+.+|.....--... -.++... +++||+.|-..-.. ....+-.||..+++|+.++. +|-+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 466999999999998876432111 1223323 77888888654443 46778899999999988875 2333322
Q ss_pred eEEEEEC-CEEEEEcccCCCccCCeEEEEECCCCeEEEcCC
Q psy11771 230 CGVAALD-GAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAP 269 (347)
Q Consensus 230 ~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 269 (347)
......+ +.+++.|... .....+..|| ..+|..+..
T Consensus 94 ~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 2222223 4688777652 2235677775 557999875
No 62
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.74 E-value=0.15 Score=44.09 Aligned_cols=175 Identities=18% Similarity=0.188 Sum_probs=95.3
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCC-----CCccceEEEEECCEEEEEcCcCCC-Ccc--ceEEEEeC
Q psy11771 141 FDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMT-----TRRRYCRIAVVENCLYALGGFDST-NYQ--ASVERLDP 212 (347)
Q Consensus 141 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~-----~~r~~~~~~~~~~~lyv~GG~~~~-~~~--~~~~~yd~ 212 (347)
-++.+|+... .....+|+.+++++.+...+ ..+.+-.++.-++.+|+..-.... ... ..++++++
T Consensus 50 ~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 50 PDGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP 122 (246)
T ss_dssp TTSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred cCCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence 3788888865 33566799999988776542 223333334447889886432211 111 57999999
Q ss_pred CCCcEEecC-CCCCCCcceEEEEE-C-CEEEEEcccCCCccCCeEEEEECCC--CeEEE---cCCCCCCCcceEEEEE--
Q psy11771 213 RMGKWAPVP-SMSSRRSSCGVAAL-D-GAIYCVGGNDGTMCMSSGERFNVRR--NSWEP---IAPMLSRRSTHEVVNI-- 282 (347)
Q Consensus 213 ~~~~W~~~~-~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~---~~~~~~~~~~~~~~~~-- 282 (347)
. .+.+.+. .+..+ ..++.. + +.+|+.-.. ...+++||... .++.. +..++..........+
T Consensus 123 ~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~ 193 (246)
T PF08450_consen 123 D-GKVTVVADGLGFP---NGIAFSPDGKTLYVADSF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS 193 (246)
T ss_dssp T-SEEEEEEEEESSE---EEEEEETTSSEEEEEETT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT
T ss_pred C-CeEEEEecCcccc---cceEECCcchheeecccc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC
Confidence 8 6655543 22222 233333 3 467875332 36799998853 32432 2233333222333333
Q ss_pred CCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCCCCCcceeEEEEEcCCCcceEEEE
Q psy11771 283 EGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLETLNIEKRLLV 340 (347)
Q Consensus 283 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 340 (347)
+|.||+..-. ...|++|||+-..-..+ .+|.+ ..+.|++++.. ..+|+|
T Consensus 194 ~G~l~va~~~-----~~~I~~~~p~G~~~~~i-~~p~~--~~t~~~fgg~~-~~~L~v 242 (246)
T PF08450_consen 194 DGNLWVADWG-----GGRIVVFDPDGKLLREI-ELPVP--RPTNCAFGGPD-GKTLYV 242 (246)
T ss_dssp TS-EEEEEET-----TTEEEEEETTSCEEEEE-E-SSS--SEEEEEEESTT-SSEEEE
T ss_pred CCCEEEEEcC-----CCEEEEECCCccEEEEE-cCCCC--CEEEEEEECCC-CCEEEE
Confidence 6899997421 24799999995544444 34433 56777776544 444554
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.66 E-value=0.35 Score=41.26 Aligned_cols=136 Identities=19% Similarity=0.252 Sum_probs=81.9
Q ss_pred CeEEEEeCCCCc--EEeCCCCCCCccceE--EEEECCEEEEEcCcCCCCccceEEEEeCCCCc--EEecCCCCCCCcceE
Q psy11771 158 SSMERYDPLTGV--WSSCPAMTTRRRYCR--IAVVENCLYALGGFDSTNYQASVERLDPRMGK--WAPVPSMSSRRSSCG 231 (347)
Q Consensus 158 ~~~~~~d~~~~~--W~~~~~~~~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~ 231 (347)
..+.++|+.+.+ |+.- +........ .+..++.+|+..+ ...++++|+.+.+ |+.-. +......
T Consensus 3 g~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~~- 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISGA- 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGSG-
T ss_pred CEEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccce-
Confidence 356778887665 7652 211222222 3447889999843 4779999987764 76644 2221112
Q ss_pred EEEECCEEEEEcccCCCccCCeEEEEECCCC--eEE-EcCCCCCC--CcceEEEEECCEEEEEeccCCCCCccEEEEEeC
Q psy11771 232 VAALDGAIYCVGGNDGTMCMSSGERFNVRRN--SWE-PIAPMLSR--RSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDP 306 (347)
Q Consensus 232 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~-~~~~~~~~--~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~ 306 (347)
....++.+|+..+. +.++++|..+. .|+ .....+.. .........++.+|+... ...+.++|+
T Consensus 72 ~~~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~ 139 (238)
T PF13360_consen 72 PVVDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDP 139 (238)
T ss_dssp EEEETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEET
T ss_pred eeecccccccccce------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEec
Confidence 47788999888632 38999997765 598 45432322 223334444777777653 247899998
Q ss_pred CCCc--EEEccC
Q psy11771 307 KLNK--WQLLTP 316 (347)
Q Consensus 307 ~~~~--W~~~~~ 316 (347)
++.+ |+.-..
T Consensus 140 ~tG~~~w~~~~~ 151 (238)
T PF13360_consen 140 KTGKLLWKYPVG 151 (238)
T ss_dssp TTTEEEEEEESS
T ss_pred CCCcEEEEeecC
Confidence 8775 766433
No 64
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=96.49 E-value=0.23 Score=43.01 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=66.6
Q ss_pred EEEE-EcCcCCC-CccceEEEEeCCC---Cc-----E---EecCCCCCCCcceEEEEE--CC--EEEEEcccCCC-----
Q psy11771 191 CLYA-LGGFDST-NYQASVERLDPRM---GK-----W---APVPSMSSRRSSCGVAAL--DG--AIYCVGGNDGT----- 248 (347)
Q Consensus 191 ~lyv-~GG~~~~-~~~~~~~~yd~~~---~~-----W---~~~~~~p~~r~~~~~~~~--~~--~iyv~GG~~~~----- 248 (347)
..|+ .||...+ ..++++|.....+ |+ . ..+.+.|.+|++|++.++ .| ...++||..-.
T Consensus 39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 4454 4666544 3345566544332 21 1 123579999999998876 33 46788986321
Q ss_pred ---c------cCCeEEEEECCCCeEEE--cCCCCCCCcceEEEEECCEEEEEeccC
Q psy11771 249 ---M------CMSSGERFNVRRNSWEP--IAPMLSRRSTHEVVNIEGYLLTMGGND 293 (347)
Q Consensus 249 ---~------~~~~v~~yd~~~~~W~~--~~~~~~~~~~~~~~~~~~~lyv~GG~~ 293 (347)
+ ....|+..|++-+..+. ++.+..+..+|.+.+-+|.+|++||..
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 1 12346677887766553 456677888999999999999999964
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.44 E-value=0.54 Score=43.48 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=85.1
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCC
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRM 214 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~ 214 (347)
+.++.++.+|+.+.. ..++++|+.+.+ |+.--.-. ...+.+..++.+|+.+. ...++++|..+
T Consensus 60 ~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~~---~~~~p~v~~~~v~v~~~------~g~l~ald~~t 124 (377)
T TIGR03300 60 QPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDER---LSGGVGADGGLVFVGTE------KGEVIALDAED 124 (377)
T ss_pred ceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCCC---cccceEEcCCEEEEEcC------CCEEEEEECCC
Confidence 445668888877541 468999987765 86432211 12234455778887543 25789999876
Q ss_pred C--cEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCC--eEEEcCCCCC--CCcceEEEEECCEEEE
Q psy11771 215 G--KWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRN--SWEPIAPMLS--RRSTHEVVNIEGYLLT 288 (347)
Q Consensus 215 ~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~--~~~~~~~~~~~~~lyv 288 (347)
. .|+...+ .. ...+.+..++.+|+..+. ..++++|++++ .|+.-...+. .+...+.+..++.+|+
T Consensus 125 G~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~~------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~ 195 (377)
T TIGR03300 125 GKELWRAKLS--SE-VLSPPLVANGLVVVRTND------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV 195 (377)
T ss_pred CcEeeeeccC--ce-eecCCEEECCEEEEECCC------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE
Confidence 5 4875432 11 112334467888875432 56899998765 4875433221 1222334555776554
Q ss_pred EeccCCCCCccEEEEEeCCCC--cEEE
Q psy11771 289 MGGNDGSSSLNSVEKYDPKLN--KWQL 313 (347)
Q Consensus 289 ~GG~~~~~~~~~v~~yd~~~~--~W~~ 313 (347)
|..+ ..+.++|+++. .|+.
T Consensus 196 -~~~~-----g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 196 -GFAG-----GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred -ECCC-----CEEEEEEccCCCEeeee
Confidence 4322 36889998765 4764
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.14 E-value=0.75 Score=42.51 Aligned_cols=125 Identities=20% Similarity=0.171 Sum_probs=72.6
Q ss_pred EECCEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCC--
Q psy11771 140 SFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMG-- 215 (347)
Q Consensus 140 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~-- 215 (347)
..++.+|+.+. ...++++|+.+.+ |+.- .. ...+.+..+++||+... ...++++|..+.
T Consensus 239 ~~~~~vy~~~~------~g~l~a~d~~tG~~~W~~~--~~---~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 239 VDGGQVYAVSY------QGRVAALDLRSGRVLWKRD--AS---SYQGPAVDDNRLYVTDA------DGVVVALDRRSGSE 301 (377)
T ss_pred EECCEEEEEEc------CCEEEEEECCCCcEEEeec--cC---CccCceEeCCEEEEECC------CCeEEEEECCCCcE
Confidence 44677776543 2458899987764 7553 11 12234456889998753 256899998775
Q ss_pred cEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCe--EEEcCCCCCCCcceEEEEECCEEEEEec
Q psy11771 216 KWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNS--WEPIAPMLSRRSTHEVVNIEGYLLTMGG 291 (347)
Q Consensus 216 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~GG 291 (347)
.|+... +. .+...+.+..++.||+... + ..++++|..+.+ |+.- +.......+-+..+++||+.+.
T Consensus 302 ~W~~~~-~~-~~~~ssp~i~g~~l~~~~~-~-----G~l~~~d~~tG~~~~~~~--~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 302 LWKNDE-LK-YRQLTAPAVVGGYLVVGDF-E-----GYLHWLSREDGSFVARLK--TDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEcccc-cc-CCccccCEEECCEEEEEeC-C-----CEEEEEECCCCCEEEEEE--cCCCccccCCEEECCEEEEEeC
Confidence 476522 11 1222333556888887532 2 468889987664 4321 1221233445677889887654
No 67
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.12 E-value=0.15 Score=44.12 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=77.9
Q ss_pred EEEE-ECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCC
Q psy11771 184 RIAV-VENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRN 262 (347)
Q Consensus 184 ~~~~-~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 262 (347)
+... .++.+|.--|..+. +.+..||+.+++-....++|..-.+-+++.++++||.+==. ....++||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEcccc-
Confidence 3444 57899987775543 78899999999888778889888889999999999998322 25789999976
Q ss_pred eEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCC
Q psy11771 263 SWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLN 309 (347)
Q Consensus 263 ~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 309 (347)
.+.+...+.+..+-+++.-+..|++.-| .+.++..||++-
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDG------S~~L~~~dP~~f 159 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDG------SSRLYFLDPETF 159 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-S------SSEEEEE-TTT-
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECC------ccceEEECCccc
Confidence 4566666666788888877888888878 357888888753
No 68
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.06 E-value=0.15 Score=44.13 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=100.0
Q ss_pred EEEEEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeC
Q psy11771 134 FAIGTCS-FDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDP 212 (347)
Q Consensus 134 ~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~ 212 (347)
+..+... .++.+|.--|..+. +.+..+|+.+++-.+..++|..-++=+++.++++||..-= .....+.||+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW-----k~~~~f~yd~ 117 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW-----KEGTGFVYDP 117 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES-----SSSEEEEEET
T ss_pred cCccEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe-----cCCeEEEEcc
Confidence 4557777 68899998887663 5688999999987766778888788889999999999832 1367899999
Q ss_pred CCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEc---C--CCCCCCcceEEEEECCEEE
Q psy11771 213 RMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPI---A--PMLSRRSTHEVVNIEGYLL 287 (347)
Q Consensus 213 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~--~~~~~~~~~~~~~~~~~ly 287 (347)
.+ .+.+..++-+..+-+++.-+..+++.-|. +.++.+||++.+=..- . ..|..+ ---+-.++|+||
T Consensus 118 ~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE~i~G~Iy 188 (264)
T PF05096_consen 118 NT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELEYINGKIY 188 (264)
T ss_dssp TT--TEEEEEEE-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEETTEEE
T ss_pred cc--ceEEEEEecCCcceEEEcCCCEEEEECCc------cceEEECCcccceEEEEEEEECCEECCC-cEeEEEEcCEEE
Confidence 75 34554444445666777777888887774 6899999987542221 1 111111 111233456655
Q ss_pred EEeccCCCCCccEEEEEeCCCCc---EEEccC
Q psy11771 288 TMGGNDGSSSLNSVEKYDPKLNK---WQLLTP 316 (347)
Q Consensus 288 v~GG~~~~~~~~~v~~yd~~~~~---W~~~~~ 316 (347)
. +.-..+.|.+-||++++ |-.+..
T Consensus 189 A-----NVW~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 189 A-----NVWQTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp E-----EETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred E-----EeCCCCeEEEEeCCCCeEEEEEEhhH
Confidence 5 11124689999999986 555544
No 69
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.92 E-value=0.74 Score=40.39 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=53.4
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEE-EC-CEEEEEcCcCCCCccceEEEEeCCCCcEEe-c
Q psy11771 144 LLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAV-VE-NCLYALGGFDSTNYQASVERLDPRMGKWAP-V 220 (347)
Q Consensus 144 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~-~~-~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~ 220 (347)
.+|+.++.+ ..+.++|+.+++-...-..... . .+++. .+ ..+|+.++. ...+..||..+.+... +
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~~-~-~~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQR-P-RGITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGTL 69 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCCC-C-CceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEec
Confidence 567776644 4688889877654322111111 1 12222 23 457777653 2568889998876543 2
Q ss_pred CCCCCCCcceEEEE-E-CCEEEEEcccCCCccCCeEEEEECCCCe
Q psy11771 221 PSMSSRRSSCGVAA-L-DGAIYCVGGNDGTMCMSSGERFNVRRNS 263 (347)
Q Consensus 221 ~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 263 (347)
+....+ ..++. - ++.+|+.++.+ ..+..||+.+.+
T Consensus 70 ~~~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~ 106 (300)
T TIGR03866 70 PSGPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRK 106 (300)
T ss_pred cCCCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCe
Confidence 221111 12222 2 34577765432 468889988754
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.84 E-value=0.91 Score=39.16 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=82.6
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEE--CCEEEEEcCcCCCCccceEEEEeCCCCcEEe
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV--ENCLYALGGFDSTNYQASVERLDPRMGKWAP 219 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 219 (347)
++.||+..- ....++++|+.+++-....... ..+++.. ++.+|+... .....+|+.+.+++.
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEE
Confidence 577887732 2367999999998765432222 3334443 789998865 345667999999988
Q ss_pred cCCCC-----CCCcceEEEEECCEEEEEccc-CCCccC--CeEEEEECCCCeEEEcC-CCCCCCcceEEEEE-CC-EEEE
Q psy11771 220 VPSMS-----SRRSSCGVAALDGAIYCVGGN-DGTMCM--SSGERFNVRRNSWEPIA-PMLSRRSTHEVVNI-EG-YLLT 288 (347)
Q Consensus 220 ~~~~p-----~~r~~~~~~~~~~~iyv~GG~-~~~~~~--~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~-~~-~lyv 288 (347)
+...+ ..+..-.++.-+|.||+..-. ...... ..++++++. .+.+.+. .+..+ .+++.. ++ .||+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheee
Confidence 76543 222222233347888886422 111111 579999998 6655543 22222 234444 34 6777
Q ss_pred EeccCCCCCccEEEEEeCCCC
Q psy11771 289 MGGNDGSSSLNSVEKYDPKLN 309 (347)
Q Consensus 289 ~GG~~~~~~~~~v~~yd~~~~ 309 (347)
.--. .+.++.||+...
T Consensus 151 ~ds~-----~~~i~~~~~~~~ 166 (246)
T PF08450_consen 151 ADSF-----NGRIWRFDLDAD 166 (246)
T ss_dssp EETT-----TTEEEEEEEETT
T ss_pred cccc-----cceeEEEecccc
Confidence 5432 346999988543
No 71
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.69 E-value=1.9 Score=40.40 Aligned_cols=146 Identities=11% Similarity=0.008 Sum_probs=80.8
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECC-EEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN-CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD 236 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 236 (347)
..++++|..+++...+..........+. .-++ .+++.....+ ...++.+|..++..+.+.......... ...-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~-spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAF-SPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEE-CCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCE-EECCC
Confidence 4688999988776655544333222222 2244 5665533222 257899999988877775433221111 11224
Q ss_pred C-EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEE-EECCEEEEEeccCCCCCccEEEEEeCCCCcEEEc
Q psy11771 237 G-AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVV-NIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLL 314 (347)
Q Consensus 237 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 314 (347)
+ +|++.....+ ...++.+|..+.++..+..-.. ...... .-+++.+++..... ....++.+|+.++.++.+
T Consensus 289 g~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~~--~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 289 GKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRGG--YNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVL 361 (417)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCCC--CccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEc
Confidence 4 4554433221 2479999998888876653221 111122 22566555554332 134799999998877766
Q ss_pred c
Q psy11771 315 T 315 (347)
Q Consensus 315 ~ 315 (347)
.
T Consensus 362 ~ 362 (417)
T TIGR02800 362 T 362 (417)
T ss_pred c
Confidence 5
No 72
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.54 E-value=0.84 Score=41.20 Aligned_cols=148 Identities=11% Similarity=0.027 Sum_probs=90.9
Q ss_pred eEEEEEEEEEC------CEEEEEccc-C-CCC--CC-CeEEEEeCCCC-----cEEeCCCCCCCccceEEEEECCEEEEE
Q psy11771 132 YVFAIGTCSFD------GLLYACGGY-D-GAS--CL-SSMERYDPLTG-----VWSSCPAMTTRRRYCRIAVVENCLYAL 195 (347)
Q Consensus 132 ~~~~~~~~~~~------~~lyv~GG~-~-~~~--~~-~~~~~~d~~~~-----~W~~~~~~~~~r~~~~~~~~~~~lyv~ 195 (347)
....++.+.+. ...+++|-. . +.. .. ..+..|+.... +++.+.....+-.-.+++.+++++.+.
T Consensus 25 ~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~ 104 (321)
T PF03178_consen 25 HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVA 104 (321)
T ss_dssp EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEE
T ss_pred eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEe
Confidence 34444555554 356666654 1 111 22 55888988884 555555444444456777789997777
Q ss_pred cCcCCCCccceEEEEeCCCCc-EEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCC
Q psy11771 196 GGFDSTNYQASVERLDPRMGK-WAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRR 274 (347)
Q Consensus 196 GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~ 274 (347)
-| +.+..|+...++ +...+.+..+-...++.+.++.|++.--.. .-.+..|+.+..+-..++.-..++
T Consensus 105 ~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~----sv~~~~~~~~~~~l~~va~d~~~~ 173 (321)
T PF03178_consen 105 VG-------NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK----SVSLLRYDEENNKLILVARDYQPR 173 (321)
T ss_dssp ET-------TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS----SEEEEEEETTTE-EEEEEEESS-B
T ss_pred ec-------CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEccc----CEEEEEEEccCCEEEEEEecCCCc
Confidence 66 678888888888 888887666667778888899776532221 134557788777677777655666
Q ss_pred cceEEEEE-CCEEEEEe
Q psy11771 275 STHEVVNI-EGYLLTMG 290 (347)
Q Consensus 275 ~~~~~~~~-~~~lyv~G 290 (347)
...++..+ ++..++++
T Consensus 174 ~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 174 WVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEEEEEE-SSSEEEEE
T ss_pred cEEEEEEecCCcEEEEE
Confidence 66666666 66544433
No 73
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.51 E-value=0.68 Score=41.81 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=84.0
Q ss_pred CEEEEEcCcCCC----Ccc-ceEEEEeCCCC-----cEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEEC
Q psy11771 190 NCLYALGGFDST----NYQ-ASVERLDPRMG-----KWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNV 259 (347)
Q Consensus 190 ~~lyv~GG~~~~----~~~-~~~~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 259 (347)
...+++|..-.. ... ..+..|+..+. +++.+......-.-.+++.++++|.+..| +.+..|+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 356666654211 122 56888998874 56666544444445778888999776666 68889988
Q ss_pred CCCe-EEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCCCCCcceeEEEEE
Q psy11771 260 RRNS-WEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVL 329 (347)
Q Consensus 260 ~~~~-W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 329 (347)
..++ +...+.+..+-...++.+.++.|++-.-.. .-.+..|+.+.++-..++.-..++.-.++..+
T Consensus 115 ~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l 181 (321)
T PF03178_consen 115 DNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK----SVSLLRYDEENNKLILVARDYQPRWVTAAEFL 181 (321)
T ss_dssp ETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred cCcccchhhheecceEEEEEEeccccEEEEEEccc----CEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence 8888 888887766666667777788666532222 13567888877778888876677776666666
No 74
>KOG2055|consensus
Probab=95.47 E-value=0.68 Score=42.71 Aligned_cols=148 Identities=13% Similarity=0.090 Sum_probs=81.2
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEE--EECCE-EEEEcCcCCCCccceEEEEeCCCCcEE
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIA--VVENC-LYALGGFDSTNYQASVERLDPRMGKWA 218 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~--~~~~~-lyv~GG~~~~~~~~~~~~yd~~~~~W~ 218 (347)
.-.+.+++|.++. -.++..|-++|. .+.++...++....+ .-+|+ ..+++|.. .-++.||..+.+-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-----eEEEEeeccccccc
Confidence 3468888998752 446666766665 333333222222211 12444 77777743 55899999998888
Q ss_pred ecCCC---CCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCC
Q psy11771 219 PVPSM---SSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGS 295 (347)
Q Consensus 219 ~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 295 (347)
.+.++ +..-.....+..++.+.++-|.+ .-++..-..+++|-.--.++-.........-+..|+++||+
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~--- 365 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT--- 365 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---
Confidence 87653 32222233344455566666643 24555555566653221222221212122224568888874
Q ss_pred CCccEEEEEeCCCCc
Q psy11771 296 SSLNSVEKYDPKLNK 310 (347)
Q Consensus 296 ~~~~~v~~yd~~~~~ 310 (347)
.+||++|...+.
T Consensus 366 ---GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 366 ---GEVYVWNLRQNS 377 (514)
T ss_pred ---ceEEEEecCCcc
Confidence 479999998874
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.44 E-value=2.5 Score=40.23 Aligned_cols=148 Identities=13% Similarity=0.048 Sum_probs=80.8
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG 237 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 237 (347)
..++.+|..+++-+.+...+..........-+.+|++....++ ...++.+|..+++.+.+...... .......-++
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~wSpDG 317 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAI-DTEPSWHPDG 317 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCC-ccceEECCCC
Confidence 4688999888776666555432222222222445665543222 25799999999888877643211 1111222344
Q ss_pred -EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 238 -AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 238 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
.|++.....+ ...++.+|..+++++.+..-. .........-+++.+++.+..+. ...++.+|+.+++.+.+.
T Consensus 318 ~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g--~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 318 KSLIFTSERGG---KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNG--KFNIARQDLETGAMQVLT 390 (448)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCC--ceEEEEEECCCCCeEEcc
Confidence 4555432222 257999999998888775211 11111122224443333333221 346899999988877665
No 76
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.29 E-value=2.7 Score=39.66 Aligned_cols=148 Identities=13% Similarity=0.036 Sum_probs=80.4
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC-
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD- 236 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~- 236 (347)
..++++|..+++-+.+...+..-.......-+.+|++.....+ ..+++.+|..+...+.+...+..- ......-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~-~~~~~spDg 298 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAID-TEPFWGKDG 298 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCc-CCeEECCCC
Confidence 4689999998887776554422111122122345554432221 257999999999888776433211 11122224
Q ss_pred CEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 237 GAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIE-GYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 237 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
+.|++.....+ ...++.+|..+++++.+.... .........-+ +.|+.....++ ...++.+|..+++.+.+.
T Consensus 299 ~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 299 RTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRILT 371 (430)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEcc
Confidence 45655532221 257999999888887765321 11111112224 44554443222 236999999988887765
Q ss_pred C
Q psy11771 316 P 316 (347)
Q Consensus 316 ~ 316 (347)
.
T Consensus 372 ~ 372 (430)
T PRK00178 372 D 372 (430)
T ss_pred C
Confidence 4
No 77
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.01 E-value=2.2 Score=37.07 Aligned_cols=175 Identities=11% Similarity=0.128 Sum_probs=96.7
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeC-----CCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCc
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDP-----LTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGK 216 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~-----~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 216 (347)
++++|++.|..+. .++.|.- ..++....-.+|.+-.+.+.++.+|.+|---. ..+.+.+||+.++.
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~ 100 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRS 100 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCc
Confidence 4689999887653 4555532 22233333345666667777788888887643 35789999999886
Q ss_pred EEecCCCCCCCc------------ceEEEEECCEEEEEcccCCCccCCeEEEEECCC----CeEEEcCCCCCCCcceEEE
Q psy11771 217 WAPVPSMSSRRS------------SCGVAALDGAIYCVGGNDGTMCMSSGERFNVRR----NSWEPIAPMLSRRSTHEVV 280 (347)
Q Consensus 217 W~~~~~~p~~r~------------~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~~~~~~~~ 280 (347)
-.....+|.+.. ....++-.+-|+++=........-.+-+.|+.+ .+|.. +.+....+ .+.
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~-naF 177 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAG-NAF 177 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhhc-cee
Confidence 442222222221 234445555667664332221112344556654 35653 23333232 345
Q ss_pred EECCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCCCCCcc--eeEEEEEc
Q psy11771 281 NIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRS--SIGAAVLE 330 (347)
Q Consensus 281 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~--~~~~~~~~ 330 (347)
++-|.||++...+... ..-.++||+.+++=..+ .++-+.. ..+....+
T Consensus 178 mvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~-~i~f~~~~~~~~~l~YN 227 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDV-SIPFPNPYGNISMLSYN 227 (250)
T ss_pred eEeeEEEEEEECCCCC-cEEEEEEECCCCceece-eeeeccccCceEeeeEC
Confidence 5578999998654322 34578999998876543 3443333 44444443
No 78
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=94.75 E-value=0.92 Score=34.88 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=57.3
Q ss_pred EEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCC---CCCCCcceEEEEECCEEEEEeccCCC-CCccEEEEE-eCC
Q psy11771 233 AALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAP---MLSRRSTHEVVNIEGYLLTMGGNDGS-SSLNSVEKY-DPK 307 (347)
Q Consensus 233 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~y-d~~ 307 (347)
+.+||.+|-..-. .......+.+||..+.+|+.+.. .........++.++|+|-++.-.... ...-++|+. |.+
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 3568888777654 23334789999999999988764 23455667788889999998754332 123467777 566
Q ss_pred CCcEEEcc
Q psy11771 308 LNKWQLLT 315 (347)
Q Consensus 308 ~~~W~~~~ 315 (347)
..+|.+..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 78999764
No 79
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.70 E-value=4.3 Score=39.08 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=65.8
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCCCCC----C-ccceEEEEEC-CEEEEEcCcCCCCccceEE
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPAMTT----R-RRYCRIAVVE-NCLYALGGFDSTNYQASVE 208 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~----~-r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~ 208 (347)
+-++.++.||+.... ..++.+|..+.+ |+.-...+. + -....++..+ ++||+... ...++
T Consensus 56 sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~ 123 (488)
T cd00216 56 TPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLV 123 (488)
T ss_pred CCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEE
Confidence 345668999987542 468889988764 865322210 0 0111233446 78887543 25689
Q ss_pred EEeCCCC--cEEecCCCCC-CC--cceEEEEECCEEEEEcccCCC----ccCCeEEEEECCCC--eEEEc
Q psy11771 209 RLDPRMG--KWAPVPSMSS-RR--SSCGVAALDGAIYCVGGNDGT----MCMSSGERFNVRRN--SWEPI 267 (347)
Q Consensus 209 ~yd~~~~--~W~~~~~~p~-~r--~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~~--~W~~~ 267 (347)
.+|..+. .|+.-...+. .. ...+.++.++.+|+ |..... .....++++|.++. .|+.-
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 9998765 4876433221 00 12233455666665 432211 12357899999765 58753
No 80
>smart00284 OLF Olfactomedin-like domains.
Probab=94.70 E-value=2.6 Score=36.51 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=97.7
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeC----CCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcE
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDP----LTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKW 217 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~----~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W 217 (347)
++++|++.+.. ...+.++.|.- ....+...-.+|.+-.+.+.++.+|.+|.--.. ...+.+||..+++-
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~-----s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN-----SHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC-----CccEEEEECCCCcE
Confidence 36888886643 11244555532 233333333466677777888999999986432 36799999999876
Q ss_pred EecCCCCCCC------------cceEEEEECCEEEEEcccCCCccCCeEEEEECCCC----eEEEcCCCCCCCcceEEEE
Q psy11771 218 APVPSMSSRR------------SSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRN----SWEPIAPMLSRRSTHEVVN 281 (347)
Q Consensus 218 ~~~~~~p~~r------------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~~ 281 (347)
.....+|.+. .....++-.+-|+++=........-.+-+.||.+- +|.. +.+.... ..+.+
T Consensus 107 ~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa-~naFm 183 (255)
T smart00284 107 QKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKRSA-SNAFM 183 (255)
T ss_pred EEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcccc-cccEE
Confidence 5444444321 12334444455555521111110112335666543 4554 2222222 23455
Q ss_pred ECCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCCCCCcceeEEEEEcCCCcceEE
Q psy11771 282 IEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLETLNIEKRL 338 (347)
Q Consensus 282 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 338 (347)
+-|.||++-... .....-.++||+.+++=. ...+|-+......+.++-+..++.|
T Consensus 184 vCGvLY~~~s~~-~~~~~I~yayDt~t~~~~-~~~i~f~n~y~~~s~l~YNP~d~~L 238 (255)
T smart00284 184 ICGILYVTRSLG-SKGEKVFYAYDTNTGKEG-HLDIPFENMYEYISMLDYNPNDRKL 238 (255)
T ss_pred EeeEEEEEccCC-CCCcEEEEEEECCCCccc-eeeeeeccccccceeceeCCCCCeE
Confidence 578999985311 122344789999987633 3345544444444444444444443
No 81
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.61 E-value=1.3 Score=42.99 Aligned_cols=118 Identities=20% Similarity=0.314 Sum_probs=69.3
Q ss_pred EEEEECCEEEEEcCcCCCCccceEEEEeCCCC--cEEecCCCCCCC--------cceEEEEECCEEEEEcccCCCccCCe
Q psy11771 184 RIAVVENCLYALGGFDSTNYQASVERLDPRMG--KWAPVPSMSSRR--------SSCGVAALDGAIYCVGGNDGTMCMSS 253 (347)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~ 253 (347)
+-+..++.||+... ...++++|..+. .|+.-...+... ...+.+..+++||+.... ..
T Consensus 64 tPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d------g~ 131 (527)
T TIGR03075 64 QPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD------AR 131 (527)
T ss_pred CCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC------CE
Confidence 34567999999654 246889998875 587654332111 122345678888875321 47
Q ss_pred EEEEECCCC--eEEEcC-CCCCC-CcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCc--EEE
Q psy11771 254 GERFNVRRN--SWEPIA-PMLSR-RSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNK--WQL 313 (347)
Q Consensus 254 v~~yd~~~~--~W~~~~-~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~ 313 (347)
++++|.++. .|+.-. ..... ....+-++.+++||+-....+......+.+||.++.+ |+.
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 899999876 486543 22111 1122335568888774322222223579999998775 764
No 82
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.60 E-value=4.2 Score=38.46 Aligned_cols=147 Identities=16% Similarity=0.078 Sum_probs=79.2
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG 237 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 237 (347)
..++++|..+++.+.+...+..........-+.+|++....++ ..+++.+|+.+++-+.+..-..... .....-++
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~spDG 303 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAPDG 303 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCcc-ceEECCCC
Confidence 4688899988887766655432222222222345655432222 2579999999887766654221111 11222344
Q ss_pred -EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEE-EECC-EEEEEeccCCCCCccEEEEEeCCCCcEEEc
Q psy11771 238 -AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVV-NIEG-YLLTMGGNDGSSSLNSVEKYDPKLNKWQLL 314 (347)
Q Consensus 238 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 314 (347)
.|+......+ ...++.+|..+++.+.+..-. ....... .-++ .|+...+.++ ...++.+|+.+++...+
T Consensus 304 ~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~~L 375 (433)
T PRK04922 304 KSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVRTL 375 (433)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECCCC---ceeEEEEECCCCCeEEC
Confidence 4544432221 247899999888887765211 1111222 2244 4555444221 23799999988888776
Q ss_pred cC
Q psy11771 315 TP 316 (347)
Q Consensus 315 ~~ 316 (347)
..
T Consensus 376 t~ 377 (433)
T PRK04922 376 TP 377 (433)
T ss_pred CC
Confidence 53
No 83
>KOG0310|consensus
Probab=94.25 E-value=1.1 Score=41.65 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=60.4
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCcE-EeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEE-
Q psy11771 141 FDGLLYACGGYDGASCLSSMERYDPLTGVW-SSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWA- 218 (347)
Q Consensus 141 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~- 218 (347)
.+|+|+.+|+..+ .+-+||..+... ..+..-..|-..-.....++.+++.|+.+ ..+..+|..+..-+
T Consensus 78 ~DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~v~k~~d~s~a~v~~ 147 (487)
T KOG0310|consen 78 SDGRLLAAGDESG-----HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD-----KVVKYWDLSTAYVQA 147 (487)
T ss_pred cCCeEEEccCCcC-----cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC-----ceEEEEEcCCcEEEE
Confidence 4699999998654 478899555322 11111111111111234588999998743 33455566554421
Q ss_pred ecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCC
Q psy11771 219 PVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRN 262 (347)
Q Consensus 219 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 262 (347)
.+..-..-....+....++.|.+.||++ ..+-.||....
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsYD-----g~vrl~DtR~~ 186 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSYD-----GKVRLWDTRSL 186 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCCC-----ceEEEEEeccC
Confidence 1222223333334445678899999997 45667787766
No 84
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.96 E-value=4.1 Score=35.85 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=84.9
Q ss_pred EEEEECCEEEEEcccC-------C----------CCCCCeEEEEeCCCCc----EEeCCCCCCCccceEEE------EEC
Q psy11771 137 GTCSFDGLLYACGGYD-------G----------ASCLSSMERYDPLTGV----WSSCPAMTTRRRYCRIA------VVE 189 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~-------~----------~~~~~~~~~~d~~~~~----W~~~~~~~~~r~~~~~~------~~~ 189 (347)
++..+++.|| |||.- + ....+.+..||..+++ |++- ...++...+-+ .++
T Consensus 41 AV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes--ih~~~~WaGEVSdIlYdP~~ 117 (339)
T PF09910_consen 41 AVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES--IHDKTKWAGEVSDILYDPYE 117 (339)
T ss_pred eeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecc--cCCccccccchhheeeCCCc
Confidence 5666677776 67761 1 1224568899988886 6543 22233333321 137
Q ss_pred CEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeE--EEc
Q psy11771 190 NCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSW--EPI 267 (347)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~ 267 (347)
++|++.-+.. ...--+|..|..+..=+.+..-|..+ .+...+..+|-+ .+-..-...+.+||..+++| +..
T Consensus 118 D~LLlAR~DG--h~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f 190 (339)
T PF09910_consen 118 DRLLLARADG--HANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIESF 190 (339)
T ss_pred CEEEEEecCC--cceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCceEEEEEccCCeEEEEec
Confidence 7888875532 22345888898888888877666553 233444444433 33334468999999999999 433
Q ss_pred CCC------C-CCCcceEEEEECCEEEEEe
Q psy11771 268 APM------L-SRRSTHEVVNIEGYLLTMG 290 (347)
Q Consensus 268 ~~~------~-~~~~~~~~~~~~~~lyv~G 290 (347)
+.- + ..+..-.++...+++|.|=
T Consensus 191 ~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~ 220 (339)
T PF09910_consen 191 DVSLSVDGGPVIRPELGAMASAYNRLFAFV 220 (339)
T ss_pred ccccCCCCCceEeeccccEEEEeeeEEEEE
Confidence 211 0 1222334567778888763
No 85
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.85 E-value=2.9 Score=34.68 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=58.1
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCcE---EeCC--CCCC--CccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCC
Q psy11771 143 GLLYACGGYDGASCLSSMERYDPLTGVW---SSCP--AMTT--RRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRM 214 (347)
Q Consensus 143 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~--~~~~--~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~ 214 (347)
+++|+|-| +.+|+|+..+..+ +.+. ..+. .....+.... ++++|++.| +..++||..+
T Consensus 63 ~~~yfFkg-------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~ 128 (194)
T cd00094 63 GKIYFFKG-------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKT 128 (194)
T ss_pred CEEEEECC-------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCC
Confidence 79999987 5688888664221 1111 1111 1222222222 689999988 6788888766
Q ss_pred CcEEec---------CCCCCCCcceEEEEEC-CEEEEEcccCCCccCCeEEEEECCCCe
Q psy11771 215 GKWAPV---------PSMSSRRSSCGVAALD-GAIYCVGGNDGTMCMSSGERFNVRRNS 263 (347)
Q Consensus 215 ~~W~~~---------~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~ 263 (347)
++...- +.+|.. -.++...+ +++|++-| +..++||..+.+
T Consensus 129 ~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 129 QKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred ccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 543211 123322 22333344 89999988 689999988765
No 86
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.76 E-value=6.2 Score=37.30 Aligned_cols=148 Identities=15% Similarity=0.050 Sum_probs=77.7
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG 237 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 237 (347)
..++++|..+++.+.+...+..........-+.+|++....++ ..+++.+|..+.....+...+.. .......-++
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~-~~~~~~spDG 301 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAI-DTSPSYSPDG 301 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCCCCc-cCceeEcCCC
Confidence 5789999998888777655443222222222345554433222 36789999998887777653321 1112222344
Q ss_pred -EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 238 -AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 238 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
.|+......+ ...++.+|..+.+.+.+.... .........-+++..++...... ...++.+|+.++....+.
T Consensus 302 ~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~--~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 302 SQIVFESDRSG---SPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGG--QFSIGVMKPDGSGERILT 374 (435)
T ss_pred CEEEEEECCCC---CCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCC--ceEEEEEECCCCceEecc
Confidence 4544332211 257899998887777665321 11111112224443333322211 246888888766655543
No 87
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.37 E-value=1.1 Score=34.49 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=56.2
Q ss_pred EECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCC---CCCCCcceEEEEECCEEEEEcccCCCc-cCCeEEEE-ECCC
Q psy11771 187 VVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPS---MSSRRSSCGVAALDGAIYCVGGNDGTM-CMSSGERF-NVRR 261 (347)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~y-d~~~ 261 (347)
.++|-+|-..-. .......+.+||..+++|+.++. .........++.++|+|-++.-..... ..-++|+. |..+
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 467878776654 23345789999999999988754 235555778889999998876543221 23467777 5667
Q ss_pred CeEEEcC
Q psy11771 262 NSWEPIA 268 (347)
Q Consensus 262 ~~W~~~~ 268 (347)
.+|.+..
T Consensus 82 ~~Wsk~~ 88 (129)
T PF08268_consen 82 QEWSKKH 88 (129)
T ss_pred ceEEEEE
Confidence 8998763
No 88
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.32 E-value=3.3 Score=40.27 Aligned_cols=117 Identities=15% Similarity=0.258 Sum_probs=67.9
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCCCCCC--------ccceEEEEECCEEEEEcCcCCCCccceE
Q psy11771 138 TCSFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPAMTTR--------RRYCRIAVVENCLYALGGFDSTNYQASV 207 (347)
Q Consensus 138 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 207 (347)
-++.++.||+... ...++.+|..+.+ |+.-...+.. ....+.+..+++||+... ...+
T Consensus 65 Pvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARL 132 (527)
T ss_pred CEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEE
Confidence 4456899998654 2358889988764 8754332211 112234566888887532 2568
Q ss_pred EEEeCCCCc--EEecC-CCCCC-CcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCe--EEE
Q psy11771 208 ERLDPRMGK--WAPVP-SMSSR-RSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNS--WEP 266 (347)
Q Consensus 208 ~~yd~~~~~--W~~~~-~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~ 266 (347)
+++|..+.+ |+.-. ..... ....+-++.+++||+-...........+..||.++.+ |+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 999998764 76532 22211 1123345678888775332222233578899988764 764
No 89
>KOG0316|consensus
Probab=92.85 E-value=5.4 Score=33.90 Aligned_cols=147 Identities=20% Similarity=0.282 Sum_probs=86.0
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEEeC-CCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEec
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSC-PAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPV 220 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 220 (347)
+++-.+.-|.+ ..+-.+||.....-+. ..-....... ..+.++.-+..||. .+.++.||..+++--+.
T Consensus 28 dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~-~~s~Dnskf~s~Gg-----Dk~v~vwDV~TGkv~Rr 96 (307)
T KOG0316|consen 28 DGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDA-ALSSDNSKFASCGG-----DKAVQVWDVNTGKVDRR 96 (307)
T ss_pred CCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeec-cccccccccccCCC-----CceEEEEEcccCeeeee
Confidence 34555555532 4466677776654321 1111111111 22334444444442 36789999988763221
Q ss_pred CCCCCCCcceEEEEEC--CEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCc
Q psy11771 221 PSMSSRRSSCGVAALD--GAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSL 298 (347)
Q Consensus 221 ~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~ 298 (347)
+.---..-.++.+| ..+.+-|+++ .++.+||...+..+++.-+...+-+...+.+.+...+.|-.++
T Consensus 97 --~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG---- 165 (307)
T KOG0316|consen 97 --FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG---- 165 (307)
T ss_pred --cccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC----
Confidence 11111112234444 3566667765 6888999999998888888888888888888888777665443
Q ss_pred cEEEEEeCCCCcE
Q psy11771 299 NSVEKYDPKLNKW 311 (347)
Q Consensus 299 ~~v~~yd~~~~~W 311 (347)
.+..||....+-
T Consensus 166 -tvRtydiR~G~l 177 (307)
T KOG0316|consen 166 -TVRTYDIRKGTL 177 (307)
T ss_pred -cEEEEEeeccee
Confidence 477888766543
No 90
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.68 E-value=9.1 Score=36.09 Aligned_cols=148 Identities=11% Similarity=0.017 Sum_probs=85.0
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECC-EEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEE-
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN-CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL- 235 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 235 (347)
.+++++|..+++=+++...+....... ..-++ +|.+.-...+ ..+++.+|..+..++++...+.. .......-
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~-~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SPD 287 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSD-VSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGI-DVNGNFVED 287 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeE-ECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCc-cCccEECCC
Confidence 479999998887666654332211122 23344 5655433222 36899999999999888764431 11112222
Q ss_pred CCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCE-EEEEeccCCCC---CccEEEEEeCCCCcE
Q psy11771 236 DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGY-LLTMGGNDGSS---SLNSVEKYDPKLNKW 311 (347)
Q Consensus 236 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~---~~~~v~~yd~~~~~W 311 (347)
+.+||......+ ...++.+|..+++.+++..-. ... ....-+++ |.......+.. ...+++.+|++++.+
T Consensus 288 G~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g--~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 288 DKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHG--KNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEeCccCC--CcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 346777653322 258999999998887765321 122 22233454 43333322111 235799999999999
Q ss_pred EEccC
Q psy11771 312 QLLTP 316 (347)
Q Consensus 312 ~~~~~ 316 (347)
+.+..
T Consensus 362 ~~LT~ 366 (419)
T PRK04043 362 RRLTA 366 (419)
T ss_pred EECCC
Confidence 88864
No 91
>KOG2055|consensus
Probab=92.10 E-value=4.4 Score=37.63 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=59.0
Q ss_pred CCE-EEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCC----ccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCc
Q psy11771 142 DGL-LYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTR----RRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGK 216 (347)
Q Consensus 142 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~----r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 216 (347)
+|. ..+++|.. .-++.||..+.+-.++.++-.. ...|.+...++ ..++-|.. ..++.....|+.
T Consensus 268 ~G~~~i~~s~rr-----ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~-----G~I~lLhakT~e 336 (514)
T KOG2055|consen 268 NGHSVIFTSGRR-----KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNN-----GHIHLLHAKTKE 336 (514)
T ss_pred CCceEEEecccc-----eEEEEeeccccccccccCCCCcccchhheeEecCCCC-eEEEcccC-----ceEEeehhhhhh
Confidence 444 55555532 3478899999888877654321 23344444444 55555543 346666667776
Q ss_pred EEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCe
Q psy11771 217 WAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNS 263 (347)
Q Consensus 217 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 263 (347)
|-.--.++-.....+...-+..|++.||. ..||++|..++.
T Consensus 337 li~s~KieG~v~~~~fsSdsk~l~~~~~~------GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 337 LITSFKIEGVVSDFTFSSDSKELLASGGT------GEVYVWNLRQNS 377 (514)
T ss_pred hhheeeeccEEeeEEEecCCcEEEEEcCC------ceEEEEecCCcc
Confidence 64322222222222222334567888875 489999998874
No 92
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.81 E-value=12 Score=35.43 Aligned_cols=149 Identities=14% Similarity=0.060 Sum_probs=78.5
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG 237 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 237 (347)
..++.+|..+++-+.+...+..-.......-+.+|++.....+ ..+++.+|..+.+.+.+..-+... ......-++
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSPDG 298 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNN-TEPTWFPDS 298 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCc-CceEECCCC
Confidence 4588888887776666554432222222222345665533221 246899999988877775433221 111222244
Q ss_pred E-EEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEccC
Q psy11771 238 A-IYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTP 316 (347)
Q Consensus 238 ~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 316 (347)
+ |+......+ ...+|.+|..+..-+.+..... ........-+++.+++.+..+. ...++.+|+.+++++.+..
T Consensus 299 ~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 299 QNLAYTSDQAG---RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred CEEEEEeCCCC---CceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC--CceEEEEECCCCCeEEeCC
Confidence 4 444332211 2478889998876666542211 1111122225554444333222 2468999999998887753
No 93
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.68 E-value=8.3 Score=33.46 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=86.4
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCC------------ccceEEEEECCEEEEEcCcCCCCcc
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTR------------RRYCRIAVVENCLYALGGFDSTNYQ 204 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~------------r~~~~~~~~~~~lyv~GG~~~~~~~ 204 (347)
+.++.+|.+|---. ..+.+.+||..+++-..-..+|.+ ......++-++.|+|+=........
T Consensus 73 G~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ 147 (250)
T PF02191_consen 73 GHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN 147 (250)
T ss_pred CeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence 67778888876533 246799999999875422222222 2234566667889988655443322
Q ss_pred ceEEEEeCCC----CcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcC-CCCCCCcceEE
Q psy11771 205 ASVERLDPRM----GKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIA-PMLSRRSTHEV 279 (347)
Q Consensus 205 ~~~~~yd~~~----~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~ 279 (347)
-.+-..|+.+ .+|.. +.+.... ..+..+-|.||++...+... ..-.+.||..+++=..+. +++.+-..+++
T Consensus 148 ivvskld~~tL~v~~tw~T--~~~k~~~-~naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~ 223 (250)
T PF02191_consen 148 IVVSKLDPETLSVEQTWNT--SYPKRSA-GNAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISM 223 (250)
T ss_pred EEEEeeCcccCceEEEEEe--ccCchhh-cceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEe
Confidence 3445567665 45764 3333333 33445667899997765443 345678999988765433 23333345555
Q ss_pred EEE---CCEEEEEe
Q psy11771 280 VNI---EGYLLTMG 290 (347)
Q Consensus 280 ~~~---~~~lyv~G 290 (347)
+.. +.+||+.-
T Consensus 224 l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 224 LSYNPRDKKLYAWD 237 (250)
T ss_pred eeECCCCCeEEEEE
Confidence 555 56788864
No 94
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.61 E-value=13 Score=35.44 Aligned_cols=148 Identities=12% Similarity=-0.064 Sum_probs=75.3
Q ss_pred CCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC
Q psy11771 157 LSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD 236 (347)
Q Consensus 157 ~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 236 (347)
...++..|.....-+.+.....+-.......-+.+|+...- .. ....++.+|+.+++-+.+...+.... .....-+
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~-~~--g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPD 272 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSF-EN--RKAEIFVQDIYTQVREKVTSFPGING-APRFSPD 272 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEe-cC--CCcEEEEEECCCCCeEEecCCCCCcC-CeeECCC
Confidence 34677777655543333222211111111122334443321 11 13578999998887766665443221 1122224
Q ss_pred -CEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCE-EEEEeccCCCCCccEEEEEeCCCCcEEEc
Q psy11771 237 -GAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGY-LLTMGGNDGSSSLNSVEKYDPKLNKWQLL 314 (347)
Q Consensus 237 -~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 314 (347)
..|++....++ ...++.+|..+++.+.+...... .......-+++ |+......+ ...++.+|.++++++.+
T Consensus 273 G~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 273 GKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAI-DTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCC-ccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEE
Confidence 44655543222 25799999999888877643211 11111222444 444432222 25799999998888876
Q ss_pred c
Q psy11771 315 T 315 (347)
Q Consensus 315 ~ 315 (347)
.
T Consensus 346 t 346 (448)
T PRK04792 346 T 346 (448)
T ss_pred e
Confidence 4
No 95
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.14 E-value=7.5 Score=33.94 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=71.9
Q ss_pred EEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCC-CcceEE--EEECCEEEEEcccCCCccCCeEEEEECCC
Q psy11771 185 IAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSR-RSSCGV--AALDGAIYCVGGNDGTMCMSSGERFNVRR 261 (347)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~--~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 261 (347)
+++-++.+|+..=. -+.+-..|+.+..=+.++. |.+ ....-- +--.+++++. ..-...+++|||.+
T Consensus 195 ~atpdGsvwyasla-----gnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wit-----twg~g~l~rfdPs~ 263 (353)
T COG4257 195 CATPDGSVWYASLA-----GNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHRFDPSV 263 (353)
T ss_pred EECCCCcEEEEecc-----ccceEEcccccCCcceecC-CCcccccccccccCccCcEEEe-----ccCCceeeEeCccc
Confidence 44558888887321 2556777887765444443 222 111111 1224667765 11235799999999
Q ss_pred CeEEEcCC-CCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCCCCCcceeEEEEEcC
Q psy11771 262 NSWEPIAP-MLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLET 331 (347)
Q Consensus 262 ~~W~~~~~-~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 331 (347)
.+|.+-+- -..+|-+..-|--.+++++--- ..+.+..|||++-+.+.++ .+|-..+...+++
T Consensus 264 ~sW~eypLPgs~arpys~rVD~~grVW~sea-----~agai~rfdpeta~ftv~p---~pr~n~gn~ql~g 326 (353)
T COG4257 264 TSWIEYPLPGSKARPYSMRVDRHGRVWLSEA-----DAGAIGRFDPETARFTVLP---IPRPNSGNIQLDG 326 (353)
T ss_pred ccceeeeCCCCCCCcceeeeccCCcEEeecc-----ccCceeecCcccceEEEec---CCCCCCCceeccC
Confidence 99987652 1233333222333567777321 1356999999999887763 3444444444444
No 96
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.01 E-value=11 Score=33.38 Aligned_cols=131 Identities=14% Similarity=0.184 Sum_probs=78.5
Q ss_pred EeCCCCCC--CccceEEEEECCEEEEEcCcCCC-----------------CccceEEEEeCCCCc----EEecCCCCCCC
Q psy11771 171 SSCPAMTT--RRRYCRIAVVENCLYALGGFDST-----------------NYQASVERLDPRMGK----WAPVPSMSSRR 227 (347)
Q Consensus 171 ~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~-----------------~~~~~~~~yd~~~~~----W~~~~~~p~~r 227 (347)
+.+++.|. .-.+-++..+++.||+ ||.-.. +.-+.++.||..+++ |.+--. .+.
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih--~~~ 102 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIH--DKT 102 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccC--Ccc
Confidence 34555553 3556677777888875 764110 122568899999886 554322 222
Q ss_pred cceEE---EE---ECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEE
Q psy11771 228 SSCGV---AA---LDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSV 301 (347)
Q Consensus 228 ~~~~~---~~---~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v 301 (347)
...+= .. ++++|++.-+... ..--+|..|..+..=+.+..-|... ++...+...|-+ .+.......+
T Consensus 103 ~WaGEVSdIlYdP~~D~LLlAR~DGh--~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i 175 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRLLLARADGH--ANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSGI 175 (339)
T ss_pred ccccchhheeeCCCcCEEEEEecCCc--ceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCceE
Confidence 22221 22 3678888754321 1235788888888888887766552 344445555544 3223346789
Q ss_pred EEEeCCCCcE
Q psy11771 302 EKYDPKLNKW 311 (347)
Q Consensus 302 ~~yd~~~~~W 311 (347)
.|||..+++|
T Consensus 176 ~~~Dli~~~~ 185 (339)
T PF09910_consen 176 HCLDLISGKW 185 (339)
T ss_pred EEEEccCCeE
Confidence 9999999999
No 97
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.94 E-value=12 Score=33.79 Aligned_cols=145 Identities=9% Similarity=0.040 Sum_probs=70.2
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCC-CcEEeCCCCCCCccceEEEEE--CCEEEEEcCcCCCCccceEEEEeCC-CCcEEe
Q psy11771 144 LLYACGGYDGASCLSSMERYDPLT-GVWSSCPAMTTRRRYCRIAVV--ENCLYALGGFDSTNYQASVERLDPR-MGKWAP 219 (347)
Q Consensus 144 ~lyv~GG~~~~~~~~~~~~~d~~~-~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~-~~~W~~ 219 (347)
.+|+..+.+ +.+..||..+ .+++.+...+.......++.. +..||+.+.. ...+..|+.. +.+++.
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g~l~~ 72 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDGALTF 72 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCCceEE
Confidence 467775533 4577777753 456555444332222223222 4467775431 2556667765 456665
Q ss_pred cCCCCCCCcceEEEEE-CC-EEEEEcccCCCccCCeEEEEECCCCe--EEEcCCCCCCCcceEEEEE-C-CEEEEEeccC
Q psy11771 220 VPSMSSRRSSCGVAAL-DG-AIYCVGGNDGTMCMSSGERFNVRRNS--WEPIAPMLSRRSTHEVVNI-E-GYLLTMGGND 293 (347)
Q Consensus 220 ~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~-~-~~lyv~GG~~ 293 (347)
+...+.+...+.++.. ++ .+|+..-. .+.+.+||..++. .+.+...+.....|.++.. + ..+|+..-.
T Consensus 73 ~~~~~~~~~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~- 146 (330)
T PRK11028 73 AAESPLPGSPTHISTDHQGRFLFSASYN-----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK- 146 (330)
T ss_pred eeeecCCCCceEEEECCCCCEEEEEEcC-----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-
Confidence 5443322222233332 34 56665422 1567777775321 1122222222223444443 3 356665421
Q ss_pred CCCCccEEEEEeCCC
Q psy11771 294 GSSSLNSVEKYDPKL 308 (347)
Q Consensus 294 ~~~~~~~v~~yd~~~ 308 (347)
.+.+.+||..+
T Consensus 147 ----~~~v~v~d~~~ 157 (330)
T PRK11028 147 ----EDRIRLFTLSD 157 (330)
T ss_pred ----CCEEEEEEECC
Confidence 24688888765
No 98
>PRK00178 tolB translocation protein TolB; Provisional
Probab=90.82 E-value=15 Score=34.67 Aligned_cols=103 Identities=11% Similarity=0.089 Sum_probs=57.7
Q ss_pred ceEEEEeCCCCcEEecCCCCCCCcceEEEEECC-EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEEC
Q psy11771 205 ASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG-AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIE 283 (347)
Q Consensus 205 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 283 (347)
..++.+|+.+++-+.+...+..- ......-+| +|++....++ ...++.+|..+.+.+.+..-+..-.. ....-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~-~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLN-GAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTE-PFWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCc-CCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCC-eEECCC
Confidence 57999999988877776543211 111222244 5554332221 25899999999988877643221111 111224
Q ss_pred C-EEEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 284 G-YLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 284 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
+ +|+......+ ...++.+|..+++++.+.
T Consensus 298 g~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 298 GRTLYFTSDRGG---KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 4 4554432221 247899998888887664
No 99
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=90.72 E-value=14 Score=34.13 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=57.5
Q ss_pred CCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCC-----CCCC--CcceEEEEECCEE
Q psy11771 167 TGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPS-----MSSR--RSSCGVAALDGAI 239 (347)
Q Consensus 167 ~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-----~p~~--r~~~~~~~~~~~i 239 (347)
.+.|+.+.. .....-.++.++|++|++.- .-.++.++..-. -+++.+ +..+ ......+...|++
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEE
Confidence 489999864 22334568889999999842 134566663211 122221 1111 1234567778899
Q ss_pred EEEcccCCC--------------ccCCeEEEEECCCCeEEEcCCCC
Q psy11771 240 YCVGGNDGT--------------MCMSSGERFNVRRNSWEPIAPML 271 (347)
Q Consensus 240 yv~GG~~~~--------------~~~~~v~~yd~~~~~W~~~~~~~ 271 (347)
+++...... ...-.|+..|.+..+|.++.++.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 999874211 11234566798899999998875
No 100
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.31 E-value=10 Score=32.06 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=48.1
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCCCcEEecC
Q psy11771 143 GLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRMGKWAPVP 221 (347)
Q Consensus 143 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 221 (347)
+.++++|+.+ ..+..||..+++-........... ..+... +++.+++++. ...+..||..+.+....-
T Consensus 21 ~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~-----~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 21 GKLLATGSGD-----GTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGSS-----DKTIRLWDLETGECVRTL 89 (289)
T ss_pred CCEEEEeecC-----cEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEcC-----CCeEEEEEcCcccceEEE
Confidence 4566666643 457777776654211111111111 122222 3445555553 256888888764321111
Q ss_pred CCCCCCcceEEEEE-CCEEEEEcccCCCccCCeEEEEECCCCe
Q psy11771 222 SMSSRRSSCGVAAL-DGAIYCVGGNDGTMCMSSGERFNVRRNS 263 (347)
Q Consensus 222 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 263 (347)
..... ...++... ++.+++.|+.+ ..+..||..+.+
T Consensus 90 ~~~~~-~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~ 126 (289)
T cd00200 90 TGHTS-YVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGK 126 (289)
T ss_pred eccCC-cEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcE
Confidence 11111 11222222 34666666533 578889987544
No 101
>PRK13684 Ycf48-like protein; Provisional
Probab=89.48 E-value=16 Score=33.19 Aligned_cols=125 Identities=16% Similarity=0.217 Sum_probs=66.4
Q ss_pred eCCCCcEEeCCCCCCCccceEEEE-ECCEEEEEcCcCCCCccceEEEEe-C-CCCcEEecCCC-C-CCCcceEEEEE-CC
Q psy11771 164 DPLTGVWSSCPAMTTRRRYCRIAV-VENCLYALGGFDSTNYQASVERLD-P-RMGKWAPVPSM-S-SRRSSCGVAAL-DG 237 (347)
Q Consensus 164 d~~~~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~yd-~-~~~~W~~~~~~-p-~~r~~~~~~~~-~~ 237 (347)
|....+|+.+.. +..+.-.+++. .++.++++|... ...+. . .-.+|+.+... . .....++++.. ++
T Consensus 200 ~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~ 271 (334)
T PRK13684 200 EPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG 271 (334)
T ss_pred CCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccCCccccccceeeEEEcCCC
Confidence 344567988754 33344444443 367888887532 23332 2 23589875421 1 11222333333 56
Q ss_pred EEEEEcccCCCccCCeEEEEECCCCeEEEcCC-CCCCCcceEEEEE-CCEEEEEeccCCCCCccEEEEEeCCC
Q psy11771 238 AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAP-MLSRRSTHEVVNI-EGYLLTMGGNDGSSSLNSVEKYDPKL 308 (347)
Q Consensus 238 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~ 308 (347)
.+|++|.. ..++.-.....+|+.+.. -..+.....++.. ++++|+.|.. ..|..|+...
T Consensus 272 ~~~~~G~~------G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------G~il~~~~~~ 332 (334)
T PRK13684 272 EIWAGGGN------GTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR------GVLLRYVGSA 332 (334)
T ss_pred CEEEEcCC------CeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC------ceEEEecCCC
Confidence 78888753 234433444568999753 2222344455555 6788887753 2577776543
No 102
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.33 E-value=14 Score=35.61 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=65.7
Q ss_pred EEEEECCEEEEEcCcCCCCccceEEEEeCCCC--cEEecCCCCC----CC-cceEEEEEC-CEEEEEcccCCCccCCeEE
Q psy11771 184 RIAVVENCLYALGGFDSTNYQASVERLDPRMG--KWAPVPSMSS----RR-SSCGVAALD-GAIYCVGGNDGTMCMSSGE 255 (347)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~----~r-~~~~~~~~~-~~iyv~GG~~~~~~~~~v~ 255 (347)
+.+..++++|+.... ..++.+|..+. .|+.-...+. +. .....+..+ +++|+.... ..++
T Consensus 56 sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~------g~v~ 123 (488)
T cd00216 56 TPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD------GRLV 123 (488)
T ss_pred CCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCC------CeEE
Confidence 345679999997542 56888998765 4876433220 00 112234456 888875431 5789
Q ss_pred EEECCCC--eEEEcCCCCC-CC--cceEEEEECCEEEEEeccCCC----CCccEEEEEeCCCCc--EEE
Q psy11771 256 RFNVRRN--SWEPIAPMLS-RR--STHEVVNIEGYLLTMGGNDGS----SSLNSVEKYDPKLNK--WQL 313 (347)
Q Consensus 256 ~yd~~~~--~W~~~~~~~~-~~--~~~~~~~~~~~lyv~GG~~~~----~~~~~v~~yd~~~~~--W~~ 313 (347)
++|.++. .|+.-..-+. .. ...+.++.++.+|+ |..... .....++++|.++.+ |+.
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 9998765 5876443221 00 11223445666665 422111 123578999987664 875
No 103
>KOG0278|consensus
Probab=89.07 E-value=11 Score=32.40 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=65.3
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEE-cCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYAL-GGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD 236 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 236 (347)
..+..+|..+.+-.+--.++.+....-+ ..+|++..+ -| +.+-.+|+.+-.--.--.||......++ .-+
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEv-s~dG~ilTia~g-------ssV~Fwdaksf~~lKs~k~P~nV~SASL-~P~ 235 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLEV-SQDGRILTIAYG-------SSVKFWDAKSFGLLKSYKMPCNVESASL-HPK 235 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcceee-ccCCCEEEEecC-------ceeEEeccccccceeeccCccccccccc-cCC
Confidence 5577888888875443333443333222 224555444 22 4566677754322222245554432222 224
Q ss_pred CEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEE-EEE--CCEEEEEeccCC
Q psy11771 237 GAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEV-VNI--EGYLLTMGGNDG 294 (347)
Q Consensus 237 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~-~~~--~~~lyv~GG~~~ 294 (347)
..+||.||.+ -.+++||-.++. .+.....+..+... +.+ +|.+|..|-.++
T Consensus 236 k~~fVaGged-----~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 236 KEFFVAGGED-----FKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred CceEEecCcc-----eEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 5799999964 467788887764 23222222233222 233 899999997765
No 104
>PTZ00421 coronin; Provisional
Probab=88.88 E-value=23 Score=34.17 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=72.2
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCcEE-eCCCCCCCccceEEE-EECCEEEEEcCcCCCCccceEEEEeCCCCcEE-e
Q psy11771 143 GLLYACGGYDGASCLSSMERYDPLTGVWS-SCPAMTTRRRYCRIA-VVENCLYALGGFDSTNYQASVERLDPRMGKWA-P 219 (347)
Q Consensus 143 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~-~ 219 (347)
+.+++.||.+ ..+.++|..+.+-. .+..... .-.+++ ..++.+++.|+.+ ..+..||+.+.+-. .
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~h~~--~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIKCHSD--QITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGTIVSS 205 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEcCCCC--ceEEEEEECCCCEEEEecCC-----CEEEEEECCCCcEEEE
Confidence 4577777754 45788888776432 1111111 111222 2256777777643 56888999876521 1
Q ss_pred cCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCe--EEEcCCCCCCCcceEEEEE--CCEEEEEeccCCC
Q psy11771 220 VPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNS--WEPIAPMLSRRSTHEVVNI--EGYLLTMGGNDGS 295 (347)
Q Consensus 220 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~ 295 (347)
+..-...+........++..++..|++... -..+..||..+.. .... .... .....+..+ ++.++++||..+
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~-Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L~lggkgD- 281 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQ-QRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLLYIGSKGE- 281 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCCC-CCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEEEEEEeCC-
Confidence 211111111111222233344444443211 2468888886532 1111 1111 111222233 455666666422
Q ss_pred CCccEEEEEeCCCCcEEEc
Q psy11771 296 SSLNSVEKYDPKLNKWQLL 314 (347)
Q Consensus 296 ~~~~~v~~yd~~~~~W~~~ 314 (347)
..|.+||..+++....
T Consensus 282 ---g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 282 ---GNIRCFELMNERLTFC 297 (493)
T ss_pred ---CeEEEEEeeCCceEEE
Confidence 3588888877765443
No 105
>KOG1898|consensus
Probab=88.76 E-value=25 Score=36.45 Aligned_cols=166 Identities=11% Similarity=0.074 Sum_probs=95.6
Q ss_pred CCCeEEEEeCCCCcEEeCCCCCCCccceEEEEE-----CCE-EEEEcCcCCCCc------cceEEEEeCCC--CcEEecC
Q psy11771 156 CLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV-----ENC-LYALGGFDSTNY------QASVERLDPRM--GKWAPVP 221 (347)
Q Consensus 156 ~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-----~~~-lyv~GG~~~~~~------~~~~~~yd~~~--~~W~~~~ 221 (347)
....+..+|+.+..-...-+++..-..++++.+ +.. +..+|+...... ...++.|+... ++-+.+.
T Consensus 851 w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 851 WVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred ccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 445677888887765444344433233333222 223 444555433221 23467776543 3455555
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEE-EEECCEEEEEeccCCCCCccE
Q psy11771 222 SMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEV-VNIEGYLLTMGGNDGSSSLNS 300 (347)
Q Consensus 222 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~ 300 (347)
..+.+-.-++++-++|++++--| +.+++||..+++--+...+..-+..-+. .....+|+| |-... .-.
T Consensus 931 ~T~~~~~v~Ai~~f~~~~LagvG-------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~V-gD~qe---SV~ 999 (1205)
T KOG1898|consen 931 KTEIPGPVGAICPFQGRVLAGVG-------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVV-GDIQE---SVH 999 (1205)
T ss_pred ccCCCccceEEeccCCEEEEecc-------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEE-eeccc---eEE
Confidence 44444445788888887666545 6889999987754332222221222222 333456555 44322 245
Q ss_pred EEEEeCCCCcEEEccCCCCCcceeEEEEEcCC
Q psy11771 301 VEKYDPKLNKWQLLTPMLTRRSSIGAAVLETL 332 (347)
Q Consensus 301 v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 332 (347)
...|+++.|+...+..-|.+|+--.+..++..
T Consensus 1000 ~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~ 1031 (1205)
T KOG1898|consen 1000 FVRYRREDNQLIVFADDPVPRHVTALELLDYD 1031 (1205)
T ss_pred EEEEecCCCeEEEEeCCCccceeeEEEEecCC
Confidence 88999999999999999999988777777653
No 106
>KOG0310|consensus
Probab=88.73 E-value=21 Score=33.48 Aligned_cols=136 Identities=14% Similarity=0.193 Sum_probs=73.5
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCC-cEEeCCCCCCCccceEEEEE-C-CEEEEEcCcCCCCccceEEEEeCC
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTG-VWSSCPAMTTRRRYCRIAVV-E-NCLYALGGFDSTNYQASVERLDPR 213 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~yd~~ 213 (347)
+....++.|.+.||+++ .+-.||..+. .|. -++.....--.+..+ + ..|..+|| +.+-++|..
T Consensus 160 ~~~~~~~hivvtGsYDg-----~vrl~DtR~~~~~v--~elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~ 225 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDG-----KVRLWDTRSLTSRV--VELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLT 225 (487)
T ss_pred ccccCCCeEEEecCCCc-----eEEEEEeccCCcee--EEecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEec
Confidence 44445778999999885 4777888777 442 222221111122233 3 45556666 678888987
Q ss_pred CCcEEecCCCC-CCCcceEEEEE-CCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEe
Q psy11771 214 MGKWAPVPSMS-SRRSSCGVAAL-DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI-EGYLLTMG 290 (347)
Q Consensus 214 ~~~W~~~~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~G 290 (347)
++. +.+..+. ....-.++... ++.=.+.||.+ ..|-+||.. .|+.+..+..+-.-.++++. +++-.++|
T Consensus 226 ~G~-qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD-----~~VKVfd~t--~~Kvv~s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 226 TGG-QLLTSMFNHNKTVTCLRLASDSTRLLSGSLD-----RHVKVFDTT--NYKVVHSWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred CCc-eehhhhhcccceEEEEEeecCCceEeecccc-----cceEEEEcc--ceEEEEeeecccceeeEEecCCCceEEEe
Confidence 554 2222222 22222333332 33444456655 356678843 46666655444444444444 66777778
Q ss_pred ccCC
Q psy11771 291 GNDG 294 (347)
Q Consensus 291 G~~~ 294 (347)
+.++
T Consensus 298 msnG 301 (487)
T KOG0310|consen 298 MSNG 301 (487)
T ss_pred cccc
Confidence 7654
No 107
>smart00284 OLF Olfactomedin-like domains.
Probab=88.67 E-value=15 Score=31.84 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=82.0
Q ss_pred EEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCC------------ccceEEEEECCEEEEEcCcCCCC
Q psy11771 135 AIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTR------------RRYCRIAVVENCLYALGGFDSTN 202 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~------------r~~~~~~~~~~~lyv~GG~~~~~ 202 (347)
+-+.++.+|.+|.--. ....+.+||..+++-.....+|.+ ....-.++-++-|+|+=......
T Consensus 76 GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 76 GTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA 150 (255)
T ss_pred cccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC
Confidence 4478899999987533 136699999999875433333321 22344566677788873332221
Q ss_pred ccceEEEEeCCC----CcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCC--CCCcc
Q psy11771 203 YQASVERLDPRM----GKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPML--SRRST 276 (347)
Q Consensus 203 ~~~~~~~yd~~~----~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~~~~ 276 (347)
-.-.+-..||.+ ++|.. +.+..... .+..+=|.||++-... .....-.+.||+.+++=.. ..+| .....
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~-naFmvCGvLY~~~s~~-~~~~~I~yayDt~t~~~~~-~~i~f~n~y~~ 225 (255)
T smart00284 151 GKIVISKLNPATLTIENTWIT--TYNKRSAS-NAFMICGILYVTRSLG-SKGEKVFYAYDTNTGKEGH-LDIPFENMYEY 225 (255)
T ss_pred CCEEEEeeCcccceEEEEEEc--CCCccccc-ccEEEeeEEEEEccCC-CCCcEEEEEEECCCCccce-eeeeecccccc
Confidence 122334566665 45765 33333222 3444567899986422 1222446789999876333 3333 33344
Q ss_pred eEEEEE---CCEEEEEe
Q psy11771 277 HEVVNI---EGYLLTMG 290 (347)
Q Consensus 277 ~~~~~~---~~~lyv~G 290 (347)
++++.. +.+||+.-
T Consensus 226 ~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 226 ISMLDYNPNDRKLYAWN 242 (255)
T ss_pred ceeceeCCCCCeEEEEe
Confidence 555555 56788853
No 108
>KOG1332|consensus
Probab=87.94 E-value=7.6 Score=33.22 Aligned_cols=102 Identities=13% Similarity=0.244 Sum_probs=58.4
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCcEEeC----------------CCCCCCccceEEEEECCEEEEEcCcCCCCccceE
Q psy11771 144 LLYACGGYDGASCLSSMERYDPLTGVWSSC----------------PAMTTRRRYCRIAVVENCLYALGGFDSTNYQASV 207 (347)
Q Consensus 144 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~----------------~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 207 (347)
+=++-||++. +-.+|.||-. +|..- |....++...+.+.-++++++.
T Consensus 176 krlvSgGcDn---~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw------------ 238 (299)
T KOG1332|consen 176 KRLVSGGCDN---LVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW------------ 238 (299)
T ss_pred ceeeccCCcc---ceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE------------
Confidence 3467788764 3456666643 55431 2334556666666656666554
Q ss_pred EEEeCCCCcEEe--cCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCC-CeEEEcCC
Q psy11771 208 ERLDPRMGKWAP--VPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRR-NSWEPIAP 269 (347)
Q Consensus 208 ~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~ 269 (347)
.-+.+.+.|+. +.++|.+....+-...++.|-|.||. +.+.++.... ++|.+++.
T Consensus 239 -t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 -TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -EecCccCcccccccccCCcceEEEEEeccccEEEEecCC------cEEEEEEeCCCCcEEEccc
Confidence 33444567764 45677766544444445555555564 5666776554 48998764
No 109
>PLN00181 protein SPA1-RELATED; Provisional
Probab=87.89 E-value=35 Score=35.17 Aligned_cols=142 Identities=19% Similarity=0.257 Sum_probs=68.2
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcE-EeCCCCCCCccceEEEE--ECCEEEEEcCcCCCCccceEEEEeCCCCc--
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVW-SSCPAMTTRRRYCRIAV--VENCLYALGGFDSTNYQASVERLDPRMGK-- 216 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~yd~~~~~-- 216 (347)
++.+++.||.+ ..+.+||..+..- ..+. ....-.++.. .++..++.|+.+ ..+..||..+..
T Consensus 587 ~~~~L~Sgs~D-----g~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~ 653 (793)
T PLN00181 587 DPTLLASGSDD-----GSVKLWSINQGVSIGTIK---TKANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLP 653 (793)
T ss_pred CCCEEEEEcCC-----CEEEEEECCCCcEEEEEe---cCCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCcc
Confidence 55677777754 3577788765432 2211 1111112222 246677777643 468889987542
Q ss_pred EEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCC----eEEEcCCCCCCCcceEEE--EECCEEEEEe
Q psy11771 217 WAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRN----SWEPIAPMLSRRSTHEVV--NIEGYLLTMG 290 (347)
Q Consensus 217 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~--~~~~~lyv~G 290 (347)
...+..-.. .-..+...++..++.|+.+ ..+-.||.... .|..+..+.........+ ..++.+++.|
T Consensus 654 ~~~~~~h~~--~V~~v~f~~~~~lvs~s~D-----~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasg 726 (793)
T PLN00181 654 LCTMIGHSK--TVSYVRFVDSSTLVSSSTD-----NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATG 726 (793)
T ss_pred ceEecCCCC--CEEEEEEeCCCEEEEEECC-----CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 112211111 1122333456666666654 45777887542 232222211111111122 2256666777
Q ss_pred ccCCCCCccEEEEEeCCC
Q psy11771 291 GNDGSSSLNSVEKYDPKL 308 (347)
Q Consensus 291 G~~~~~~~~~v~~yd~~~ 308 (347)
+.+ ..+.+|+...
T Consensus 727 s~D-----~~v~iw~~~~ 739 (793)
T PLN00181 727 SET-----NEVFVYHKAF 739 (793)
T ss_pred eCC-----CEEEEEECCC
Confidence 654 3577787654
No 110
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=87.82 E-value=16 Score=30.89 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=64.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEE-eCCCCCCCccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCCCcEEe
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWS-SCPAMTTRRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRMGKWAP 219 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 219 (347)
+++.+++|+.+ ..+.+||..+++.. ..... ...-.++... ++++++.|+.+ ..+..||..+.+-..
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~ 129 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETGECVRTLTGH--TSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLT 129 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcccceEEEecc--CCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEE
Confidence 33455566543 45788888764321 11111 1111222222 34666665522 568889987544222
Q ss_pred -cCCCCCCCcceEEEEEC-CEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCC-cceEEEEE-CCEEEEEeccCCC
Q psy11771 220 -VPSMSSRRSSCGVAALD-GAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRR-STHEVVNI-EGYLLTMGGNDGS 295 (347)
Q Consensus 220 -~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~~~~-~~~lyv~GG~~~~ 295 (347)
+.. ......++.... +.+++.|+.+ ..+..||..+.+- +..+.... ....+... +++.+++++.+
T Consensus 130 ~~~~--~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-- 198 (289)
T cd00200 130 TLRG--HTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSD-- 198 (289)
T ss_pred Eecc--CCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCC--
Confidence 221 111122233333 4555444422 4688888864331 11111111 11122222 34355555542
Q ss_pred CCccEEEEEeCCCCc
Q psy11771 296 SSLNSVEKYDPKLNK 310 (347)
Q Consensus 296 ~~~~~v~~yd~~~~~ 310 (347)
..+.+||..+.+
T Consensus 199 ---~~i~i~d~~~~~ 210 (289)
T cd00200 199 ---GTIKLWDLSTGK 210 (289)
T ss_pred ---CcEEEEECCCCc
Confidence 357888877643
No 111
>KOG4350|consensus
Probab=87.19 E-value=0.63 Score=42.33 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=43.3
Q ss_pred cCChHHHHHHHHHHHHhc-----cccccccccCCCChHHHHHhcccccccccC
Q psy11771 46 VNSSCGNYILPTAWVSVA-----LQLLRHVKLPLLARDFLMNSVESESLIKES 93 (347)
Q Consensus 46 v~~E~~v~~~~~~Wv~~~-----~~ll~~vr~~~l~~~~l~~~l~~~~l~~~~ 93 (347)
..-|.++|-|+.+|-+++ .++++.||+|+++...|...+.-..++..+
T Consensus 204 fApE~~IFlAv~~W~~~Nske~~k~~~~~VRLPLm~lteLLnvVRPsGllspD 256 (620)
T KOG4350|consen 204 FAPELKIFLAVRSWHQNNSKEASKVLLELVRLPLMTLTELLNVVRPSGLLSPD 256 (620)
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHhhhhccHHHHHhccCcccCcCHH
Confidence 567899999999999999 889999999999999999999988887654
No 112
>PRK04922 tolB translocation protein TolB; Provisional
Probab=86.92 E-value=28 Score=32.88 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=56.5
Q ss_pred ceEEEEeCCCCcEEecCCCCCCCcceEEEEECC-EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEEC
Q psy11771 205 ASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG-AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIE 283 (347)
Q Consensus 205 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 283 (347)
..++.+|..+++-+.+...+... ......-+| +|++....++ ...++.+|..+++-+.+..-...... ....-+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~-~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~-~~~spD 302 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGIN-GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTE-PTWAPD 302 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCc-cCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccc-eEECCC
Confidence 57899999888877776544221 112222344 5655433222 25799999998877666543211111 111224
Q ss_pred CEEEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 284 GYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 284 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
++-+++...... ...++.+|..+++.+.+.
T Consensus 303 G~~l~f~sd~~g--~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 303 GKSIYFTSDRGG--RPQIYRVAASGGSAERLT 332 (433)
T ss_pred CCEEEEEECCCC--CceEEEEECCCCCeEEee
Confidence 543333321111 246888888888777664
No 113
>PRK05137 tolB translocation protein TolB; Provisional
Probab=85.93 E-value=32 Score=32.53 Aligned_cols=148 Identities=8% Similarity=0.003 Sum_probs=74.2
Q ss_pred CCeEEEEeCCCCcEEeCCCCCCCccceEEEEECC-EEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEE
Q psy11771 157 LSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN-CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL 235 (347)
Q Consensus 157 ~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 235 (347)
...+++.|.....-+++..-...-..... .-++ +|+......+ ...++.+|+.+++.+.+...+.... .....-
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~w-SpDG~~lay~s~~~g---~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SP 255 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRF-SPNRQEITYMSYANG---RPRVYLLDLETGQRELVGNFPGMTF-APRFSP 255 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEE-CCCCCEEEEEEecCC---CCEEEEEECCCCcEEEeecCCCccc-CcEECC
Confidence 45688888765543333322111111111 2244 4444322111 2679999999888877765443222 122223
Q ss_pred CC-EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEc
Q psy11771 236 DG-AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLL 314 (347)
Q Consensus 236 ~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 314 (347)
+| +|++....++ ...++.+|..+..-..+...+.... .....-+++-.++...... ...++.+|..+.+.+.+
T Consensus 256 DG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~g--~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 256 DGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQIVFESDRSG--SPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccC-ceeEcCCCCEEEEEECCCC--CCeEEEEECCCCCeEEe
Confidence 44 4554433222 2579999999887777654332111 1122224443333321111 24688888877766665
Q ss_pred c
Q psy11771 315 T 315 (347)
Q Consensus 315 ~ 315 (347)
.
T Consensus 330 t 330 (435)
T PRK05137 330 S 330 (435)
T ss_pred e
Confidence 4
No 114
>KOG0289|consensus
Probab=85.74 E-value=30 Score=32.15 Aligned_cols=118 Identities=14% Similarity=0.256 Sum_probs=64.9
Q ss_pred ceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEE-CCEEEEEcccCCCccCCeEEEEEC
Q psy11771 182 YCRIAVV-ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL-DGAIYCVGGNDGTMCMSSGERFNV 259 (347)
Q Consensus 182 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~ 259 (347)
..+++.+ +|-||..|-. ...+-.||..+.. .++.+|..-..-..+.+ .+-.|++-+.+. .+|.+||.
T Consensus 350 ~ts~~fHpDgLifgtgt~-----d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP-----DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCC-----CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC----CeEEEEEe
Confidence 3344444 5566555542 2457778888765 55555542222233333 333444443332 34888888
Q ss_pred CCCeEEEcCCCCCCC-cceEEEEEC--CEEEEEeccCCCCCccEEEEEeCCCCcEEEccCC
Q psy11771 260 RRNSWEPIAPMLSRR-STHEVVNIE--GYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPM 317 (347)
Q Consensus 260 ~~~~W~~~~~~~~~~-~~~~~~~~~--~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 317 (347)
...+ .....+..- .....+.++ |+..+++|.+ -.|+.|+-++.+|+++..+
T Consensus 419 RKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 419 RKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred hhhc--ccceeeccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeehh
Confidence 7655 333222222 133444553 6777777642 3578888899999998754
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=85.62 E-value=23 Score=30.71 Aligned_cols=147 Identities=18% Similarity=0.167 Sum_probs=69.0
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCcEEe-CCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecC
Q psy11771 143 GLLYACGGYDGASCLSSMERYDPLTGVWSS-CPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVP 221 (347)
Q Consensus 143 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 221 (347)
..+|+.++.+ +.+.+||..+.+... ++....+ ...+...-++.+|+.++.+ ..+..||+.+.+- +.
T Consensus 43 ~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~--~~ 109 (300)
T TIGR03866 43 KLLYVCASDS-----DTIQVIDLATGEVIGTLPSGPDP-ELFALHPNGKILYIANEDD-----NLVTVIDIETRKV--LA 109 (300)
T ss_pred CEEEEEECCC-----CeEEEEECCCCcEEEeccCCCCc-cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeE--Ee
Confidence 3567776532 468889988876543 2221111 1111111234677765422 4688899887542 22
Q ss_pred CCCCCCcceEEEE-ECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccE
Q psy11771 222 SMSSRRSSCGVAA-LDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNS 300 (347)
Q Consensus 222 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 300 (347)
.++......+++. -++.+++++..+. ..+..||..+.+-....... .+..+....-+++.+++++..+ ..
T Consensus 110 ~~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~----~~ 180 (300)
T TIGR03866 110 EIPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIG----GT 180 (300)
T ss_pred EeeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCC----CE
Confidence 2221111122222 3566666654321 34566787765432211111 1111122222555444444322 35
Q ss_pred EEEEeCCCCcE
Q psy11771 301 VEKYDPKLNKW 311 (347)
Q Consensus 301 v~~yd~~~~~W 311 (347)
+..||.++.+.
T Consensus 181 v~i~d~~~~~~ 191 (300)
T TIGR03866 181 VSVIDVATRKV 191 (300)
T ss_pred EEEEEcCccee
Confidence 88888876543
No 116
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.53 E-value=30 Score=31.87 Aligned_cols=153 Identities=18% Similarity=0.159 Sum_probs=87.6
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCC-
Q psy11771 138 TCSFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRM- 214 (347)
Q Consensus 138 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~- 214 (347)
.+..++++|+... + ..++.+|+.+.+ |+.....-...........+++||+-.. . ..+++||..+
T Consensus 64 ~~~~dg~v~~~~~-~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~-----g~~y~ld~~~G 131 (370)
T COG1520 64 PADGDGTVYVGTR-D-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-D-----GKLYALDASTG 131 (370)
T ss_pred cEeeCCeEEEecC-C-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-c-----ceEEEEECCCC
Confidence 3777899998711 1 268999999887 8654322011122222233788777543 2 2689999954
Q ss_pred -CcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCC--eEEEcCCC-CCCCcceEEEEECCEEEEEe
Q psy11771 215 -GKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRN--SWEPIAPM-LSRRSTHEVVNIEGYLLTMG 290 (347)
Q Consensus 215 -~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~-~~~~~~~~~~~~~~~lyv~G 290 (347)
..|+.-.+.. .+.....+..++.+|+... ...++++|..+. .|+.-.+. ...+.....+..++.+|+-.
T Consensus 132 ~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~ 204 (370)
T COG1520 132 TLVWSRNVGGS-PYYASPPVVGDGTVYVGTD------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGS 204 (370)
T ss_pred cEEEEEecCCC-eEEecCcEEcCcEEEEecC------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEec
Confidence 4687754432 3344445556777777631 257888888754 58754332 12222222235577777753
Q ss_pred ccCCCCCccEEEEEeCCCC--cEEE
Q psy11771 291 GNDGSSSLNSVEKYDPKLN--KWQL 313 (347)
Q Consensus 291 G~~~~~~~~~v~~yd~~~~--~W~~ 313 (347)
.. . ...++.+|+++. .|+.
T Consensus 205 ~~---~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 205 DG---Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CC---C-cceEEEEEccCCcEeeee
Confidence 21 1 226889998655 4774
No 117
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.24 E-value=48 Score=33.97 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=22.3
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCC
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPA 175 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~ 175 (347)
.-+++++.||+... .+.++.+|..+.+ |+.-+.
T Consensus 189 TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 189 TPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred CCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCC
Confidence 45567999999854 2467888877664 765443
No 118
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=85.16 E-value=32 Score=31.99 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=57.3
Q ss_pred ceEEEEeCCCCcEEecCCCCCCCcceEEEEECC-EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEEC
Q psy11771 205 ASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG-AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIE 283 (347)
Q Consensus 205 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 283 (347)
..++.+|..+++-..+...+..... ....-++ .|++....++ ...++.+|..++..+.+......... ....-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTE-PSWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCC-EEECCC
Confidence 5789999988876665544322222 1222244 5655543222 25799999998877777543321111 111224
Q ss_pred CE-EEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 284 GY-LLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 284 ~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
++ |++.....+ ...++.+|..+.++..+.
T Consensus 289 g~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 289 GKSIAFTSDRGG---SPQIYMMDADGGEVRRLT 318 (417)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 44 444332222 247899998888877664
No 119
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=84.34 E-value=24 Score=32.55 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=57.1
Q ss_pred CCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCC-----CCCC--CcceEEEEECCEE
Q psy11771 214 MGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAP-----MLSR--RSTHEVVNIEGYL 286 (347)
Q Consensus 214 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-----~~~~--~~~~~~~~~~~~l 286 (347)
.+.|+.+.. .....-.++.++|++|++.- ...++.+|.+- +=+++++ +..+ ....-.|...|+|
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEE
Confidence 489999974 22235678899999999932 13566666431 1122221 1111 1223466778899
Q ss_pred EEEeccCCCC------------Ccc--EEEEEeCCCCcEEEccCCC
Q psy11771 287 LTMGGNDGSS------------SLN--SVEKYDPKLNKWQLLTPML 318 (347)
Q Consensus 287 yv~GG~~~~~------------~~~--~v~~yd~~~~~W~~~~~~~ 318 (347)
+++....... ... .|+..|.+..+|.++..+.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 9998742110 112 3555588899999998763
No 120
>PRK02889 tolB translocation protein TolB; Provisional
Probab=84.21 E-value=38 Score=31.96 Aligned_cols=147 Identities=14% Similarity=0.045 Sum_probs=74.4
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECC-EEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN-CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD 236 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 236 (347)
..++++|..+.+-..+...+..... ....-++ +|++....++ ...+|.+|..+...+.+..-. .........-+
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~~-~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpD 294 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNSA-PAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPD 294 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCCC-CCCcCeEEcCC
Confidence 4589999888765555444322221 1222244 5655433222 367889998877766664422 11111222334
Q ss_pred C-EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 237 G-AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 237 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
| .|+......+ ...+|.+|..+...+.+..-. .........-+|+..++....+. ...++.+|..+++.+.+.
T Consensus 295 G~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 295 GRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGG--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred CCEEEEEecCCC---CcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCC--cEEEEEEECCCCCeEEcc
Confidence 4 4554432211 247888888877776664211 11111122224543333332221 236899998888777664
No 121
>KOG0289|consensus
Probab=83.11 E-value=40 Score=31.41 Aligned_cols=124 Identities=18% Similarity=0.246 Sum_probs=70.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCCCcEEec
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRMGKWAPV 220 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 220 (347)
++.|+..|-.+ ..+-+||.+++. .++.+|..-........ +|.-|++-+.+. ..+.+||....+ ..
T Consensus 358 DgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~lwDLRKl~--n~ 424 (506)
T KOG0289|consen 358 DGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVKLWDLRKLK--NF 424 (506)
T ss_pred CceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC----CeEEEEEehhhc--cc
Confidence 55666555533 357788988876 55566654333333333 444455433332 348899987654 33
Q ss_pred CCCCCCCc-ceEEEEEC--CEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEEC
Q psy11771 221 PSMSSRRS-SCGVAALD--GAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIE 283 (347)
Q Consensus 221 ~~~p~~r~-~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 283 (347)
+.++..-. ......++ |...+++|.+ -.||.|+-.+.+|+.+..++.-..-...|.++
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeehhhhcccccceeeec
Confidence 33322211 22333443 6666677632 45777788899999998776554344556664
No 122
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=82.30 E-value=41 Score=30.95 Aligned_cols=110 Identities=21% Similarity=0.248 Sum_probs=61.8
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCC--cEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCC--c
Q psy11771 141 FDGLLYACGGYDGASCLSSMERYDPLTG--VWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMG--K 216 (347)
Q Consensus 141 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~ 216 (347)
.+++||+-.. ++ .++++|..+. .|+.-.... .+..-..+..++.+|+.. ....++++|..+. .
T Consensus 110 ~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~ 176 (370)
T COG1520 110 SDGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLK 176 (370)
T ss_pred eCCeEEEecc-cc-----eEEEEECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEE
Confidence 3778765533 22 6899999644 586543332 333333444466777653 1356888888754 5
Q ss_pred EEecCCC-CCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCC--eEEEc
Q psy11771 217 WAPVPSM-SSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRN--SWEPI 267 (347)
Q Consensus 217 W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~ 267 (347)
|+.-.+. ...+.....+..++.+|+.... . ...++.+|++++ .|+.-
T Consensus 177 W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~---~-~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 177 WTYETPAPLSLSIYGSPAIASGTVYVGSDG---Y-DGILYALNAEDGTLKWSQK 226 (370)
T ss_pred EEEecCCccccccccCceeecceEEEecCC---C-cceEEEEEccCCcEeeeee
Confidence 8754332 2222222333566777765322 1 236889999765 58753
No 123
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.98 E-value=38 Score=30.35 Aligned_cols=182 Identities=14% Similarity=0.163 Sum_probs=80.1
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCC-CCCCccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCC
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPA-MTTRRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRM 214 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~ 214 (347)
++...++..|++|.. .-+..-.-.-.+|++++- .+.+-..+.+..+ ++.++++|.. ..+++=.-.-
T Consensus 66 ~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG 133 (302)
T PF14870_consen 66 SISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGG 133 (302)
T ss_dssp EEEEETTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTT
T ss_pred EEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCC
Confidence 444567889988752 224444446678999752 2233333444444 5677777642 3455544455
Q ss_pred CcEEecCCCCCCCcceEEEE-ECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccC
Q psy11771 215 GKWAPVPSMSSRRSSCGVAA-LDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGND 293 (347)
Q Consensus 215 ~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 293 (347)
.+|+.+..-...- -..+.. -++++++++... +-....|+....|+........|.......-++.|+++. ..
T Consensus 134 ~tW~~~~~~~~gs-~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 134 KTWQAVVSETSGS-INDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp SSEEEEE-S-----EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred CCeeEcccCCcce-eEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC
Confidence 7899876533322 222333 356655565321 223457888888988776544444333333367888875 11
Q ss_pred CCCCccEEEEEe--CCCCcEEEccCCCCCcceeEE--EEEcCCCcceEEEEcCCCCC
Q psy11771 294 GSSSLNSVEKYD--PKLNKWQLLTPMLTRRSSIGA--AVLETLNIEKRLLVAPPAPT 346 (347)
Q Consensus 294 ~~~~~~~v~~yd--~~~~~W~~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~ 346 (347)
+ .+..=| -...+|.+-. .|....+.+. ..... ...+|++.++++
T Consensus 207 g-----~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~---~~~~wa~gg~G~ 254 (302)
T PF14870_consen 207 G-----QIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRP---PNEIWAVGGSGT 254 (302)
T ss_dssp T-----EEEEEE-TTEEEEE---B--TTSS--S-EEEEEESS---SS-EEEEESTT-
T ss_pred c-----EEEEccCCCCcccccccc-CCcccCceeeEEEEecC---CCCEEEEeCCcc
Confidence 1 233334 3455677621 3333333332 23332 356677666653
No 124
>KOG0316|consensus
Probab=81.74 E-value=22 Score=30.35 Aligned_cols=93 Identities=17% Similarity=0.291 Sum_probs=60.0
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEEC--CEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEE
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVE--NCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL 235 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 235 (347)
..+..+|..+.+-- ..+...-....++..+ ..+.+-|+.+ .++.+||..++..+++.-+...+..-..+.+
T Consensus 81 k~v~vwDV~TGkv~--Rr~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVD--RRFRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred ceEEEEEcccCeee--eecccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence 45888998887521 1111111122233333 3566666644 6789999999999998888888888888888
Q ss_pred CCEEEEEcccCCCccCCeEEEEECCCC
Q psy11771 236 DGAIYCVGGNDGTMCMSSGERFNVRRN 262 (347)
Q Consensus 236 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 262 (347)
.+...+.|..++ ++-.||...+
T Consensus 154 ~~heIvaGS~DG-----tvRtydiR~G 175 (307)
T KOG0316|consen 154 AEHEIVAGSVDG-----TVRTYDIRKG 175 (307)
T ss_pred cccEEEeeccCC-----cEEEEEeecc
Confidence 888777776543 4455665544
No 125
>KOG2321|consensus
Probab=81.71 E-value=16 Score=35.13 Aligned_cols=105 Identities=19% Similarity=0.268 Sum_probs=56.7
Q ss_pred CCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC--CEEEEEcccCCCccCCeEEEEECCCCeEEE
Q psy11771 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD--GAIYCVGGNDGTMCMSSGERFNVRRNSWEP 266 (347)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 266 (347)
+-.||+.|. .+++|++|+..++|-. |+...-...-++.++ ..|..+||.+ ..|+.+|+...+-..
T Consensus 145 scDly~~gs------g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~-----g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 145 SCDLYLVGS------GSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTED-----GVVEFWDPRDKSRVG 211 (703)
T ss_pred CccEEEeec------CcceEEEEcccccccc--ccccccccceeeeecCccceEEecccC-----ceEEEecchhhhhhe
Confidence 345777653 3789999999998844 322211112222222 3467778754 578999987754221
Q ss_pred -------cCCCCCCCc--ceEEEEECC-EEEEEeccCCCCCccEEEEEeCCCCc
Q psy11771 267 -------IAPMLSRRS--THEVVNIEG-YLLTMGGNDGSSSLNSVEKYDPKLNK 310 (347)
Q Consensus 267 -------~~~~~~~~~--~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~ 310 (347)
+.+.|..-. ..++..+.+ -|-+--|... ..+++||..+.+
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~----G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST----GSVLIYDLRASK 261 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccC----CcEEEEEcccCC
Confidence 122232222 234445533 5555445432 357888876654
No 126
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.66 E-value=46 Score=31.09 Aligned_cols=149 Identities=13% Similarity=0.004 Sum_probs=82.3
Q ss_pred CCeEEEEeCCCC-----cEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCc---EE-ecCCCCCCC
Q psy11771 157 LSSMERYDPLTG-----VWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGK---WA-PVPSMSSRR 227 (347)
Q Consensus 157 ~~~~~~~d~~~~-----~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~---W~-~~~~~p~~r 227 (347)
.+.++..|.... .|+.+.+- ..-....+...++.+|+.-.. ......+..++..+.. |. .+.+-....
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEcCCCCce
Confidence 367899998875 67776442 222333445568999998652 2334677888877654 66 444433333
Q ss_pred cceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE---CCEEEE-EeccCCCCCccEEEE
Q psy11771 228 SSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI---EGYLLT-MGGNDGSSSLNSVEK 303 (347)
Q Consensus 228 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv-~GG~~~~~~~~~v~~ 303 (347)
.-..+...++.|++.-=.+ ....+.+||..........++|.... ...... .+.+++ +.+.. .-..++.
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~---~~~~l~v~~~~~~~~~~~~~~p~~g~-v~~~~~~~~~~~~~~~~ss~~---~P~~~y~ 400 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYREN---GSSRLRVYDLDDGKESREIPLPEAGS-VSGVSGDFDSDELRFSYSSFT---TPPTVYR 400 (414)
T ss_dssp EEEEEEEETTEEEEEEEET---TEEEEEEEETT-TEEEEEEESSSSSE-EEEEES-TT-SEEEEEEEETT---EEEEEEE
T ss_pred eEEEEEEECCEEEEEEEEC---CccEEEEEECCCCcEEeeecCCcceE-EeccCCCCCCCEEEEEEeCCC---CCCEEEE
Confidence 4455566788887764322 23688999998222222223343221 112221 344444 44432 2347999
Q ss_pred EeCCCCcEEEcc
Q psy11771 304 YDPKLNKWQLLT 315 (347)
Q Consensus 304 yd~~~~~W~~~~ 315 (347)
||+.+++.+.+.
T Consensus 401 ~d~~t~~~~~~k 412 (414)
T PF02897_consen 401 YDLATGELTLLK 412 (414)
T ss_dssp EETTTTCEEEEE
T ss_pred EECCCCCEEEEE
Confidence 999999877653
No 127
>KOG2321|consensus
Probab=79.59 E-value=11 Score=36.11 Aligned_cols=73 Identities=26% Similarity=0.364 Sum_probs=44.9
Q ss_pred CCCcceEEEEE--CCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEEC--CEEEEEeccCCCCCccE
Q psy11771 225 SRRSSCGVAAL--DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIE--GYLLTMGGNDGSSSLNS 300 (347)
Q Consensus 225 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~~ 300 (347)
.|+.+..++.. +-.||++|-. .+||+++++++.|-. |+.......-++.++ +.|+.+||.++ .
T Consensus 132 IP~~GRDm~y~~~scDly~~gsg------~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~g-----~ 198 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGSG------SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTEDG-----V 198 (703)
T ss_pred cCcCCccccccCCCccEEEeecC------cceEEEEcccccccc--ccccccccceeeeecCccceEEecccCc-----e
Confidence 33444444432 3467877642 689999999998843 332222233344443 56888888643 6
Q ss_pred EEEEeCCCCc
Q psy11771 301 VEKYDPKLNK 310 (347)
Q Consensus 301 v~~yd~~~~~ 310 (347)
++++||.+++
T Consensus 199 VEfwDpR~ks 208 (703)
T KOG2321|consen 199 VEFWDPRDKS 208 (703)
T ss_pred EEEecchhhh
Confidence 9999998764
No 128
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=78.98 E-value=97 Score=33.21 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=81.4
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCC----------CC---CCccceEEEEE--CCEEEEEcCcCCCCccce
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSCPA----------MT---TRRRYCRIAVV--ENCLYALGGFDSTNYQAS 206 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~----------~~---~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 206 (347)
++.|||.... .+.+++||+.+........ .. .-....+++.. ++.|||.... .+.
T Consensus 694 ~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----n~~ 763 (1057)
T PLN02919 694 NEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----SSS 763 (1057)
T ss_pred CCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----CCe
Confidence 5677777432 2568888887765433210 00 00112233333 3469998653 367
Q ss_pred EEEEeCCCCcEEecC--C--CCC----------------CCcceEEEE-ECCEEEEEcccCCCccCCeEEEEECCCCeEE
Q psy11771 207 VERLDPRMGKWAPVP--S--MSS----------------RRSSCGVAA-LDGAIYCVGGNDGTMCMSSGERFNVRRNSWE 265 (347)
Q Consensus 207 ~~~yd~~~~~W~~~~--~--~p~----------------~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 265 (347)
+.+||+.++....+. . .+. ...-.+++. -+|.|||....+ +.+.+||+.+....
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~ 838 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVT 838 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEE
Confidence 889998876532211 0 000 000112222 357899986543 68999999988777
Q ss_pred EcCCCCC----------C--CcceEEEEE-CCEEEEEeccCCCCCccEEEEEeCCCCc
Q psy11771 266 PIAPMLS----------R--RSTHEVVNI-EGYLLTMGGNDGSSSLNSVEKYDPKLNK 310 (347)
Q Consensus 266 ~~~~~~~----------~--~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 310 (347)
.+..... . ..-++++.- +++|||....+ +.|.++|..+++
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 6543111 0 011233332 68899986543 468899988775
No 129
>KOG0291|consensus
Probab=78.73 E-value=76 Score=31.89 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=80.0
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCC
Q psy11771 143 GLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPS 222 (347)
Q Consensus 143 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 222 (347)
|.=..+|+. .+..+.+|+..+++......-...+.....-.-++.+.+.|+.+ ..+-+||..+..- +..
T Consensus 319 GDWiA~g~~----klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD-----gKVKvWn~~SgfC--~vT 387 (893)
T KOG0291|consen 319 GDWIAFGCS----KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED-----GKVKVWNTQSGFC--FVT 387 (893)
T ss_pred CCEEEEcCC----ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC-----CcEEEEeccCceE--EEE
Confidence 444455552 24567888877766533222223333333333478888888855 4577888776431 112
Q ss_pred CCCCCcceEEEEE--CCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEEC--CEEEEEeccCCCCCc
Q psy11771 223 MSSRRSSCGVAAL--DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIE--GYLLTMGGNDGSSSL 298 (347)
Q Consensus 223 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~lyv~GG~~~~~~~ 298 (347)
+...-..++++.+ .+...+....+ .+|-.+|.....=-+--.-|. +..++++.++ |.|.+.|+.+.
T Consensus 388 FteHts~Vt~v~f~~~g~~llssSLD-----GtVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG~~d~---- 457 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSSLD-----GTVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAGAQDS---- 457 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEeecC-----CeEEeeeecccceeeeecCCC-ceeeeEEEEcCCCCEEEeeccce----
Confidence 2222223333322 34433333333 256666665543222112233 3445666776 88999988653
Q ss_pred cEEEEEeCCCCcEEEc
Q psy11771 299 NSVEKYDPKLNKWQLL 314 (347)
Q Consensus 299 ~~v~~yd~~~~~W~~~ 314 (347)
-+|++++.++++--.+
T Consensus 458 F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDI 473 (893)
T ss_pred EEEEEEEeecCeeeeh
Confidence 3688888888765443
No 130
>PLN00181 protein SPA1-RELATED; Provisional
Probab=78.68 E-value=85 Score=32.37 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=49.3
Q ss_pred CCEEEEEcCcCCCCccceEEEEeCCCCcE-EecCCCCCCCcceEEEE--ECCEEEEEcccCCCccCCeEEEEECCCCe--
Q psy11771 189 ENCLYALGGFDSTNYQASVERLDPRMGKW-APVPSMSSRRSSCGVAA--LDGAIYCVGGNDGTMCMSSGERFNVRRNS-- 263 (347)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-- 263 (347)
++.+++.||.+ ..+..||..+..- ..+.. .. ...++.. -++.++++|+.+ ..+..||..+..
T Consensus 587 ~~~~L~Sgs~D-----g~v~iWd~~~~~~~~~~~~-~~--~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~ 653 (793)
T PLN00181 587 DPTLLASGSDD-----GSVKLWSINQGVSIGTIKT-KA--NICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLP 653 (793)
T ss_pred CCCEEEEEcCC-----CEEEEEECCCCcEEEEEec-CC--CeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCcc
Confidence 45677777744 4578888875432 12211 11 1111111 246777777754 478899987542
Q ss_pred EEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCC
Q psy11771 264 WEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKL 308 (347)
Q Consensus 264 W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 308 (347)
...+..-... ...+...++..++.|+.++ .+.+||...
T Consensus 654 ~~~~~~h~~~--V~~v~f~~~~~lvs~s~D~-----~ikiWd~~~ 691 (793)
T PLN00181 654 LCTMIGHSKT--VSYVRFVDSSTLVSSSTDN-----TLKLWDLSM 691 (793)
T ss_pred ceEecCCCCC--EEEEEEeCCCEEEEEECCC-----EEEEEeCCC
Confidence 1111111111 1112223556666666432 466777653
No 131
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=77.82 E-value=47 Score=29.82 Aligned_cols=103 Identities=10% Similarity=0.031 Sum_probs=52.7
Q ss_pred EEEEEcCcCCCCccceEEEEeCCC-CcEEecCCCCCCCcceEEEEE-C-CEEEEEcccCCCccCCeEEEEECC-CCeEEE
Q psy11771 191 CLYALGGFDSTNYQASVERLDPRM-GKWAPVPSMSSRRSSCGVAAL-D-GAIYCVGGNDGTMCMSSGERFNVR-RNSWEP 266 (347)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~ 266 (347)
++|+..+.+ ..+..||..+ .+++.+..++.....+.++.- + ..||+.+.. ...+..|+.. +++++.
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g~l~~ 72 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDGALTF 72 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCCceEE
Confidence 577875432 5577788753 567666555433222333332 3 456775432 2567677765 456765
Q ss_pred cCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccEEEEEeCCC
Q psy11771 267 IAPMLSRRSTHEVVNI-EG-YLLTMGGNDGSSSLNSVEKYDPKL 308 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~~v~~yd~~~ 308 (347)
+...+.+..-+.++.. ++ .||+..- . .+.+.+||..+
T Consensus 73 ~~~~~~~~~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~~~ 111 (330)
T PRK11028 73 AAESPLPGSPTHISTDHQGRFLFSASY-N----ANCVSVSPLDK 111 (330)
T ss_pred eeeecCCCCceEEEECCCCCEEEEEEc-C----CCeEEEEEECC
Confidence 5543333222223222 34 4666542 1 24567777653
No 132
>PRK01742 tolB translocation protein TolB; Provisional
Probab=75.78 E-value=72 Score=30.06 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=68.5
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECC-EEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN-CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD 236 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 236 (347)
..++.+|..+++-+.+...+..... ....-++ +|++....++ ..++|.+|..+.....+..-... .......-+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~~-~~wSPDG~~La~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSpD 302 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNGA-PAFSPDGSRLAFASSKDG---VLNIYVMGANGGTPSQLTSGAGN-NTEPSWSPD 302 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccCc-eeECCCCCEEEEEEecCC---cEEEEEEECCCCCeEeeccCCCC-cCCEEECCC
Confidence 4588888887765555444322221 1222344 4544332222 24588899888777666542221 111222234
Q ss_pred CE-EEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 237 GA-IYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 237 ~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
++ |+......+ ...+|.+|.....-+.+.. .. ......-+++..++.+. +.+..+|..+.++..+.
T Consensus 303 G~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 303 GQSILFTSDRSG---SPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC------CCEEEEECCCCCeEEec
Confidence 44 555433222 1467777776554333321 11 11112224443333332 24777898888887654
No 133
>PRK13684 Ycf48-like protein; Provisional
Probab=75.39 E-value=64 Score=29.31 Aligned_cols=149 Identities=11% Similarity=0.118 Sum_probs=73.8
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCC-CCCccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCCCcEE
Q psy11771 141 FDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAM-TTRRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRMGKWA 218 (347)
Q Consensus 141 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 218 (347)
.++..|+.|. . ..+++=+-.-.+|+++... ..+...+.+..+ ++.+|+.|.. ..+++-+-.-.+|+
T Consensus 98 ~~~~~~~~G~-~-----g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~ 165 (334)
T PRK13684 98 KGDEGWIVGQ-P-----SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWE 165 (334)
T ss_pred cCCcEEEeCC-C-----ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc------ceEEEECCCCCCce
Confidence 3445565542 1 2244433344689887532 122222333333 3456665542 33455444567999
Q ss_pred ecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEE-EECCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEeccCCCC
Q psy11771 219 PVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGER-FNVRRNSWEPIAPMLSRRSTHEVVNI-EGYLLTMGGNDGSS 296 (347)
Q Consensus 219 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~-yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~ 296 (347)
.+...... ..+.+....+..|++.|.. ..++. .|....+|+.+.. +..+.-.+++.. +++++++|...
T Consensus 166 ~~~~~~~g-~~~~i~~~~~g~~v~~g~~-----G~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G--- 235 (334)
T PRK13684 166 ALVEDAAG-VVRNLRRSPDGKYVAVSSR-----GNFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGG--- 235 (334)
T ss_pred eCcCCCcc-eEEEEEECCCCeEEEEeCC-----ceEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCC---
Confidence 88653322 2344444444444443332 23333 2455568998854 444444444444 67888887421
Q ss_pred CccEEEEE--eCCCCcEEEcc
Q psy11771 297 SLNSVEKY--DPKLNKWQLLT 315 (347)
Q Consensus 297 ~~~~v~~y--d~~~~~W~~~~ 315 (347)
...+ +-.-.+|+.+.
T Consensus 236 ----~~~~~s~d~G~sW~~~~ 252 (334)
T PRK13684 236 ----QIRFNDPDDLESWSKPI 252 (334)
T ss_pred ----EEEEccCCCCCcccccc
Confidence 2233 22335798753
No 134
>KOG0296|consensus
Probab=74.79 E-value=67 Score=29.25 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=75.9
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCc--cceEEEEECCEEEEEcCcCCCCccceEEEEeCCC--CcE
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRR--RYCRIAVVENCLYALGGFDSTNYQASVERLDPRM--GKW 217 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~--~~W 217 (347)
++.+.+.||-+ +.-+.++..++.|- ..+.... .....-.+++.+.+.|+..+ .+.+|+..+ .+|
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdmsG-----~v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMSG-----KVLVFKVSTGGEQW 142 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCCc-----cEEEEEcccCceEE
Confidence 78899999954 44678888888753 2232222 22233345778888887653 344454443 456
Q ss_pred EecCCCCCCC--cceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCC
Q psy11771 218 APVPSMSSRR--SSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGS 295 (347)
Q Consensus 218 ~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 295 (347)
....++..-- ..|- ...|+++|-.+ .++|+|...+..-.++=+=+..++..+-..=+||..+.|-.+
T Consensus 143 ~~~~e~~dieWl~WHp----~a~illAG~~D-----GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d-- 211 (399)
T KOG0296|consen 143 KLDQEVEDIEWLKWHP----RAHILLAGSTD-----GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD-- 211 (399)
T ss_pred EeecccCceEEEEecc----cccEEEeecCC-----CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC--
Confidence 5542211100 0011 24566666544 468888887753333322233333333333356655554322
Q ss_pred CCccEEEEEeCCCCc
Q psy11771 296 SSLNSVEKYDPKLNK 310 (347)
Q Consensus 296 ~~~~~v~~yd~~~~~ 310 (347)
..+.++||++.+
T Consensus 212 ---gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 212 ---GTIIVWNPKTGQ 223 (399)
T ss_pred ---ceEEEEecCCCc
Confidence 257788887764
No 135
>KOG1036|consensus
Probab=74.44 E-value=62 Score=28.71 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=68.7
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG 237 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 237 (347)
.++..||...+.-+. .+.....-..++..+..=.+.||.+ ..+-.||..+..=..+..-..+.....-. ...
T Consensus 35 gslrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~ 106 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEV 106 (323)
T ss_pred CcEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccC-----ceEEEEEecCCcceeeccCCCceEEEEee-ccC
Confidence 346777777763221 1111122223444555555567754 45888999887766655433332211111 223
Q ss_pred EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCC
Q psy11771 238 AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLN 309 (347)
Q Consensus 238 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 309 (347)
...|.||++ .++..+|+.+.. .+.....+..-+++-+.+++ .|+|+.+ ..+.+||..+.
T Consensus 107 ~~vIsgsWD-----~~ik~wD~R~~~--~~~~~d~~kkVy~~~v~g~~-LvVg~~~-----r~v~iyDLRn~ 165 (323)
T KOG1036|consen 107 GCVISGSWD-----KTIKFWDPRNKV--VVGTFDQGKKVYCMDVSGNR-LVVGTSD-----RKVLIYDLRNL 165 (323)
T ss_pred CeEEEcccC-----ccEEEEeccccc--cccccccCceEEEEeccCCE-EEEeecC-----ceEEEEEcccc
Confidence 346778886 678888887621 12222333333334344444 5556542 46899997654
No 136
>KOG4378|consensus
Probab=73.35 E-value=87 Score=29.89 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=47.8
Q ss_pred eEEEEeCCCC----cEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEE
Q psy11771 206 SVERLDPRMG----KWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVN 281 (347)
Q Consensus 206 ~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 281 (347)
.+..||.... .|.....-|. .+.+....+..|++.-|++ ..++.||.....-...-.-..| .+++.
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~--~gicfspsne~l~vsVG~D-----kki~~yD~~s~~s~~~l~y~~P---lstva 257 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPC--RGICFSPSNEALLVSVGYD-----KKINIYDIRSQASTDRLTYSHP---LSTVA 257 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCc--CcceecCCccceEEEeccc-----ceEEEeecccccccceeeecCC---cceee
Confidence 3566666543 3555554443 2445566788888888876 6889999875432211000011 12333
Q ss_pred E--CCEEEEEeccCCCCCccEEEEEeCCC
Q psy11771 282 I--EGYLLTMGGNDGSSSLNSVEKYDPKL 308 (347)
Q Consensus 282 ~--~~~lyv~GG~~~~~~~~~v~~yd~~~ 308 (347)
+ +|.+.++|-.+ ..++.||...
T Consensus 258 f~~~G~~L~aG~s~-----G~~i~YD~R~ 281 (673)
T KOG4378|consen 258 FSECGTYLCAGNSK-----GELIAYDMRS 281 (673)
T ss_pred ecCCceEEEeecCC-----ceEEEEeccc
Confidence 4 45555555432 2578888654
No 137
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=73.14 E-value=1.2e+02 Score=31.25 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=24.4
Q ss_pred eEEEEECCEEEEEcCcCCCCccceEEEEeCCCC--cEEecCCC
Q psy11771 183 CRIAVVENCLYALGGFDSTNYQASVERLDPRMG--KWAPVPSM 223 (347)
Q Consensus 183 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~ 223 (347)
.+-+.+++.+|+... ...++.+|..+. .|+.-+..
T Consensus 188 ~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCC
Confidence 445677999999854 356888888764 48765543
No 138
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=73.14 E-value=63 Score=28.13 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=77.9
Q ss_pred EEEEECCEEEEEccc--CCCCCCCeEEEEe---CCCCcEEe--CCCCCC-------CccceEEEEECCEEEEEcCcCCCC
Q psy11771 137 GTCSFDGLLYACGGY--DGASCLSSMERYD---PLTGVWSS--CPAMTT-------RRRYCRIAVVENCLYALGGFDSTN 202 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~--~~~~~~~~~~~~d---~~~~~W~~--~~~~~~-------~r~~~~~~~~~~~lyv~GG~~~~~ 202 (347)
++-+++++||.+=-. -....+...+.|| ...+.|+. ++.++. ...-|+.+.+++.-|.+|=.+++.
T Consensus 79 SMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~ 158 (367)
T PF12217_consen 79 SMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDV 158 (367)
T ss_dssp -EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SS
T ss_pred eeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCC
Confidence 778889999877433 1223344455555 35667854 444444 345677888888888888666553
Q ss_pred ccceEEE--EeCC----CCcE-EecC-CCCCCCcceEEEEECCEEEEEc-ccCCCccCCeEEEEECCCCeEEEcCC-CCC
Q psy11771 203 YQASVER--LDPR----MGKW-APVP-SMSSRRSSCGVAALDGAIYCVG-GNDGTMCMSSGERFNVRRNSWEPIAP-MLS 272 (347)
Q Consensus 203 ~~~~~~~--yd~~----~~~W-~~~~-~~p~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~~-~~~ 272 (347)
....+=. |... ...- +.++ .....-...++-.++|+||+.- |......-+.+.+-+.....|+.+.- -..
T Consensus 159 sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nv 238 (367)
T PF12217_consen 159 SPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNV 238 (367)
T ss_dssp SS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT--
T ss_pred CcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccc
Confidence 3333322 2111 1111 1222 2233333455667899999985 44444445677777777778988742 222
Q ss_pred CCcceEEEEECCEEEEEecc
Q psy11771 273 RRSTHEVVNIEGYLLTMGGN 292 (347)
Q Consensus 273 ~~~~~~~~~~~~~lyv~GG~ 292 (347)
-......+..++.||+||-.
T Consensus 239 HhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 239 HHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp -SS---EEEETTEEEEEEE-
T ss_pred cccCCCceeeCCEEEEEecc
Confidence 22333456779999999963
No 139
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=72.25 E-value=83 Score=29.77 Aligned_cols=106 Identities=11% Similarity=0.065 Sum_probs=58.2
Q ss_pred cceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEEC
Q psy11771 204 QASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIE 283 (347)
Q Consensus 204 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 283 (347)
..+++.+|..+.+-.++...+..-...+..--+.+|+.+-...+ ...++.||++..+=+.+..-..... +....-+
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~~~~~-~p~~Spd 336 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPD 336 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC---CcceEEECCCCCceeEeeccCCCCc-CccCCCC
Confidence 46789999988773334332221112222223445555432222 2489999998876655543222222 3333335
Q ss_pred CEEEEEeccCCCCCccEEEEEeCCCCc-EEEcc
Q psy11771 284 GYLLTMGGNDGSSSLNSVEKYDPKLNK-WQLLT 315 (347)
Q Consensus 284 ~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~ 315 (347)
++.++|-+..+.. .++..+|+.++. |+.+.
T Consensus 337 G~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 337 GDKIVFESSSGGQ--WDIDKNDLASGGKIRILT 367 (425)
T ss_pred CCEEEEEeccCCc--eeeEEeccCCCCcEEEcc
Confidence 6555555443222 578899998777 88775
No 140
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=71.19 E-value=85 Score=28.83 Aligned_cols=117 Identities=10% Similarity=-0.056 Sum_probs=65.3
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEE-EEECCEEEEEcCcCCC----CccceEEEEeCCCCcE
Q psy11771 143 GLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRI-AVVENCLYALGGFDST----NYQASVERLDPRMGKW 217 (347)
Q Consensus 143 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~-~~~~~~lyv~GG~~~~----~~~~~~~~yd~~~~~W 217 (347)
..+||.-....... +++.++|..+.+- +..++.....+.. ..-+..+|+.-.+-.. ...+.+..||+.+.+-
T Consensus 13 ~~v~V~d~~~~~~~-~~v~ViD~~~~~v--~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 13 RRVYVLDPGHFAAT-TQVYTIDGEAGRV--LGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CEEEEECCcccccC-ceEEEEECCCCEE--EEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 36787755432222 7899999888653 3333332222223 2335689998763211 2357899999998875
Q ss_pred Ee-cCCCCCCCcc------eEEEEECC-EEEEEcccCCCccCCeEEEEECCCCeEEE
Q psy11771 218 AP-VPSMSSRRSS------CGVAALDG-AIYCVGGNDGTMCMSSGERFNVRRNSWEP 266 (347)
Q Consensus 218 ~~-~~~~p~~r~~------~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 266 (347)
.. ++..+.||.. ..+..-+| .+|+.. ....+.+-+.|.++++-..
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEec----CCCCCEEEEEECCCCcEEE
Confidence 43 3322333421 22222344 577652 2223688889988876543
No 141
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=71.18 E-value=78 Score=28.38 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=68.5
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCCCcEEe
Q psy11771 141 FDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRMGKWAP 219 (347)
Q Consensus 141 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 219 (347)
-++.++++|.. ..+++=.-.-.+|+.+..-... .-..+... ++++++++... +-....|+....|+.
T Consensus 113 ~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~ 180 (302)
T PF14870_consen 113 GDGSAELAGDR------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQP 180 (302)
T ss_dssp ETTEEEEEETT--------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EE
T ss_pred CCCcEEEEcCC------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceE
Confidence 45567766542 3466666667789876532221 22222333 55655555422 223467888888988
Q ss_pred cCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEE--CCCCeEEEcC-CCCCCCcceEEEEE--CCEEEEEeccCC
Q psy11771 220 VPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFN--VRRNSWEPIA-PMLSRRSTHEVVNI--EGYLLTMGGNDG 294 (347)
Q Consensus 220 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd--~~~~~W~~~~-~~~~~~~~~~~~~~--~~~lyv~GG~~~ 294 (347)
.......|.......-++.|+++. .. ..+..=+ ....+|++.. +......+.--+.. ++.+++.||.
T Consensus 181 ~~r~~~~riq~~gf~~~~~lw~~~-~G-----g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-- 252 (302)
T PF14870_consen 181 HNRNSSRRIQSMGFSPDGNLWMLA-RG-----GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-- 252 (302)
T ss_dssp EE--SSS-EEEEEE-TTS-EEEEE-TT-----TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST--
T ss_pred EccCccceehhceecCCCCEEEEe-CC-----cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC--
Confidence 765444443333334467787764 11 1233333 2345687732 22223333232333 6899999984
Q ss_pred CCCccEEEEEeCCCCcEEEccC
Q psy11771 295 SSSLNSVEKYDPKLNKWQLLTP 316 (347)
Q Consensus 295 ~~~~~~v~~yd~~~~~W~~~~~ 316 (347)
..+++=.-.-++|++...
T Consensus 253 ----G~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 253 ----GTLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp ----T-EEEESSTTSS-EE-GG
T ss_pred ----ccEEEeCCCCccceECcc
Confidence 245555567788998764
No 142
>PRK02889 tolB translocation protein TolB; Provisional
Probab=70.19 E-value=98 Score=29.16 Aligned_cols=147 Identities=14% Similarity=0.054 Sum_probs=70.9
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECC-EEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN-CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD 236 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 236 (347)
..++..|......+++......-..... .-++ +|+... ... ....++.+|..+.+=..+...+.. .......-+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~w-SPDG~~la~~s-~~~--~~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAW-SPDGTKLAYVS-FES--KKPVVYVHDLATGRRRVVANFKGS-NSAPAWSPD 250 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceE-cCCCCEEEEEE-ccC--CCcEEEEEECCCCCEEEeecCCCC-ccceEECCC
Confidence 5678888765544444322222222222 2244 444332 221 125689999988765555443321 112222234
Q ss_pred C-EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 237 G-AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 237 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
+ +|++....++ ...+|.+|..+...+.+..-. .........-+++-.++....+. ...++.+|..+.+.+.+.
T Consensus 251 G~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g--~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 251 GRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGG--APQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCEEEEEEccCC---CceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCC--CcEEEEEECCCCceEEEe
Confidence 4 5554433222 257999998877766664322 11111122225543333322111 246888887777666553
No 143
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=70.05 E-value=87 Score=28.49 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=71.3
Q ss_pred EEEEeCCCCcEEeCCCCCCCc--cceEEEEECCEEEEEcCcCCCCccceEEEE--eCCCCcEEecCCCCCCCcceEEEEE
Q psy11771 160 MERYDPLTGVWSSCPAMTTRR--RYCRIAVVENCLYALGGFDSTNYQASVERL--DPRMGKWAPVPSMSSRRSSCGVAAL 235 (347)
Q Consensus 160 ~~~~d~~~~~W~~~~~~~~~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~y--d~~~~~W~~~~~~p~~r~~~~~~~~ 235 (347)
++.||..+.+++.+......- .+.+...-++.||+..... .....+..| +..+.+.+.+...+......+-+.+
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~ 94 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV 94 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE
T ss_pred EEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE
Confidence 556677899988765432221 2222222467899986543 112344444 5555688877765532223333333
Q ss_pred ---CCEEEEEcccCCCccCCeEEEEECCCC-eEEEcC---------CCC---CCCcceEEEEE-C-CEEEEEeccCCCCC
Q psy11771 236 ---DGAIYCVGGNDGTMCMSSGERFNVRRN-SWEPIA---------PML---SRRSTHEVVNI-E-GYLLTMGGNDGSSS 297 (347)
Q Consensus 236 ---~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~---------~~~---~~~~~~~~~~~-~-~~lyv~GG~~~~~~ 297 (347)
+..||+..-. ..++.+|+...+ .-.... +-+ ..-.-|.+... + ..+|+..--
T Consensus 95 ~~~g~~l~vany~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG----- 164 (345)
T PF10282_consen 95 DPDGRFLYVANYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG----- 164 (345)
T ss_dssp CTTSSEEEEEETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----
T ss_pred ecCCCEEEEEEcc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----
Confidence 4456665321 146777777653 222211 111 12233444444 3 467776411
Q ss_pred ccEEEEEeCCCCc--EEE
Q psy11771 298 LNSVEKYDPKLNK--WQL 313 (347)
Q Consensus 298 ~~~v~~yd~~~~~--W~~ 313 (347)
.+.|++|+...+. ...
T Consensus 165 ~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp TTEEEEEEE-TTS-TEEE
T ss_pred CCEEEEEEEeCCCceEEE
Confidence 3578888876665 554
No 144
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=69.39 E-value=75 Score=27.52 Aligned_cols=176 Identities=17% Similarity=0.160 Sum_probs=85.2
Q ss_pred ECCEEEEEc--ccCCC-CCCCeE-EEEeCC-CCcEEeCCCCCCC--------ccceEEEEECCEEEEEcCcCCCCccceE
Q psy11771 141 FDGLLYACG--GYDGA-SCLSSM-ERYDPL-TGVWSSCPAMTTR--------RRYCRIAVVENCLYALGGFDSTNYQASV 207 (347)
Q Consensus 141 ~~~~lyv~G--G~~~~-~~~~~~-~~~d~~-~~~W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 207 (347)
.+++|+++- +.... .....+ +..... ..+|+....++.. -....+...++.+++..-..........
T Consensus 57 ~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~ 136 (275)
T PF13088_consen 57 PDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGSFSAF 136 (275)
T ss_dssp TTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCEEEEE
T ss_pred CCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccCcceE
Confidence 388998886 22221 111121 233333 4579876443211 1111234447888887211111112333
Q ss_pred EEEeCC-CCcEEecCCCCCC-Cc-ceEEEEE-CCEEEEEcccCCCccCCeEEEEECC-CCeEEEcC--CCCCCCcceEEE
Q psy11771 208 ERLDPR-MGKWAPVPSMSSR-RS-SCGVAAL-DGAIYCVGGNDGTMCMSSGERFNVR-RNSWEPIA--PMLSRRSTHEVV 280 (347)
Q Consensus 208 ~~yd~~-~~~W~~~~~~p~~-r~-~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~--~~~~~~~~~~~~ 280 (347)
..|... -.+|+.....+.. .. ..+.+.. +|.|+++--..... ...+.+... -.+|+... .+|.......++
T Consensus 137 ~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~ 214 (275)
T PF13088_consen 137 VYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIYISRSTDGGRTWSPPQPTNLPNPNSSISLV 214 (275)
T ss_dssp EEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEEEEEESSTTSS-EEEEEEECSSCCEEEEEE
T ss_pred EEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEEEEEECCCCCcCCCceecccCcccCCceEE
Confidence 334444 4579887765432 22 3333333 67888876442111 233334443 44799865 455555555555
Q ss_pred EE-CCEEEEEeccCCCCCccEEEEEeCCCCcEEEccCCC
Q psy11771 281 NI-EGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPML 318 (347)
Q Consensus 281 ~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 318 (347)
.+ +++++++.........-.+..-.....+|.....+.
T Consensus 215 ~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~ 253 (275)
T PF13088_consen 215 RLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTID 253 (275)
T ss_dssp ECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEE
T ss_pred EcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEe
Confidence 55 678888887322211122333334478898765543
No 145
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=68.55 E-value=80 Score=27.50 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=74.6
Q ss_pred EEEEEEECCEEEEEcccCCCCCCCeEE--EEeCC-----CCcEEeCC-CCCCCccceEEEEECCEEEEEc-CcCCCCccc
Q psy11771 135 AIGTCSFDGLLYACGGYDGASCLSSME--RYDPL-----TGVWSSCP-AMTTRRRYCRIAVVENCLYALG-GFDSTNYQA 205 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~~~~~~~~~--~~d~~-----~~~W~~~~-~~~~~r~~~~~~~~~~~lyv~G-G~~~~~~~~ 205 (347)
.|+.+.+++.-|.+|=.+++..-..+- .|... .-.-+.++ .........++-..++.||+.- |......-+
T Consensus 138 ~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS 217 (367)
T PF12217_consen 138 LHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGS 217 (367)
T ss_dssp EEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---
T ss_pred eeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcc
Confidence 568899999999998877665444432 22211 11112222 2222334445556799999874 444445557
Q ss_pred eEEEEeCCCCcEEecCCC-CCCCcceEEEEECCEEEEEcccCC------C--------ccCCeEE-E-----EECCCCeE
Q psy11771 206 SVERLDPRMGKWAPVPSM-SSRRSSCGVAALDGAIYCVGGNDG------T--------MCMSSGE-R-----FNVRRNSW 264 (347)
Q Consensus 206 ~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~------~--------~~~~~v~-~-----yd~~~~~W 264 (347)
.+.+-+.....|+.+.-. ..-....-.+..++.||++|.... . .....+. + +.++.-+|
T Consensus 218 ~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew 297 (367)
T PF12217_consen 218 SLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEW 297 (367)
T ss_dssp EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---
T ss_pred eeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEE
Confidence 788888888999987532 233334455778999999986311 0 0011111 1 45666678
Q ss_pred EEcCCCC------CCCcceEEEE-ECCEEE-EEeccC
Q psy11771 265 EPIAPML------SRRSTHEVVN-IEGYLL-TMGGND 293 (347)
Q Consensus 265 ~~~~~~~------~~~~~~~~~~-~~~~ly-v~GG~~ 293 (347)
..+..-- ..-++.++++ -++-|| +|||.+
T Consensus 298 ~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 298 VNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred EEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 7775321 2223444444 477765 578754
No 146
>KOG1523|consensus
Probab=68.13 E-value=91 Score=27.98 Aligned_cols=99 Identities=13% Similarity=0.214 Sum_probs=53.4
Q ss_pred CCeEEEEeCCCCc-EEeCCCCCCCccceEE---EEECCEEEEEcCcCCCCccceEEEEeC-CCCcEEecCCCCCCCcceE
Q psy11771 157 LSSMERYDPLTGV-WSSCPAMTTRRRYCRI---AVVENCLYALGGFDSTNYQASVERLDP-RMGKWAPVPSMSSRRSSCG 231 (347)
Q Consensus 157 ~~~~~~~d~~~~~-W~~~~~~~~~r~~~~~---~~~~~~lyv~GG~~~~~~~~~~~~yd~-~~~~W~~~~~~p~~r~~~~ 231 (347)
.+++.+|....+. |+....+......-.. +...++| |.++.+ +..|++.. ...+|....-+-.--....
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~d-----rnayVw~~~~~~~WkptlvLlRiNrAAt 104 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHD-----RNAYVWTQPSGGTWKPTLVLLRINRAAT 104 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCC-----CCccccccCCCCeeccceeEEEecccee
Confidence 3679999998888 9887766543222222 2224455 334433 45677766 7788976554332211222
Q ss_pred EEEE--CCEEEEEcccCCCccCCeEEEEECCCCeE
Q psy11771 232 VAAL--DGAIYCVGGNDGTMCMSSGERFNVRRNSW 264 (347)
Q Consensus 232 ~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 264 (347)
.+.. +...|++|+.. ..-+|..|.-+++=|
T Consensus 105 ~V~WsP~enkFAVgSga---r~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 105 CVKWSPKENKFAVGSGA---RLISVCYYEQENDWW 136 (361)
T ss_pred eEeecCcCceEEeccCc---cEEEEEEEeccccee
Confidence 2322 44556666532 234566666665544
No 147
>KOG0286|consensus
Probab=67.24 E-value=91 Score=27.64 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=35.6
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcE----EeCCCCCCCccceEEEEE--CCEEEEEcCcCCCCccceEEEE
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVW----SSCPAMTTRRRYCRIAVV--ENCLYALGGFDSTNYQASVERL 210 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~y 210 (347)
++-...++....||.+ +.+-+|+..+..= .....++....+.+++.. +++|.--.| ..++-.+
T Consensus 103 CA~sPSg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG------D~TCalW 171 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG------DMTCALW 171 (343)
T ss_pred EEECCCCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC------CceEEEE
Confidence 4444456666667755 3456677664421 112234555555565544 445544333 2455666
Q ss_pred eCCCCc
Q psy11771 211 DPRMGK 216 (347)
Q Consensus 211 d~~~~~ 216 (347)
|.++.+
T Consensus 172 Die~g~ 177 (343)
T KOG0286|consen 172 DIETGQ 177 (343)
T ss_pred Ecccce
Confidence 766654
No 148
>PRK03629 tolB translocation protein TolB; Provisional
Probab=66.43 E-value=1.2e+02 Score=28.66 Aligned_cols=145 Identities=10% Similarity=-0.060 Sum_probs=71.4
Q ss_pred CCeEEEEeCCCCcEEeCCCCCCCccceEEEEECC-EEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEE
Q psy11771 157 LSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN-CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL 235 (347)
Q Consensus 157 ~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 235 (347)
...+++.|.....=+.+..-...-... ...-++ +|.... ... ....++.+|..+++-+.+...+..-.. ....-
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p-~wSPDG~~la~~s-~~~--g~~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SP 252 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSP-AWSPDGSKLAYVT-FES--GRSALVIQTLANGAVRQVASFPRHNGA-PAFSP 252 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeee-EEcCCCCEEEEEE-ecC--CCcEEEEEECCCCCeEEccCCCCCcCC-eEECC
Confidence 457888887654323332211111111 122244 343332 111 135788999988776666654432211 12223
Q ss_pred CC-EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccEEEEEeCCCCcEE
Q psy11771 236 DG-AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI--EGYLLTMGGNDGSSSLNSVEKYDPKLNKWQ 312 (347)
Q Consensus 236 ~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 312 (347)
+| +|++.....+ ...++.+|..+++.+.+..-... .....+ +++-+++....+. ...++.+|+.+.+-+
T Consensus 253 DG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~---~~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 253 DGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSN---NTEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQ 324 (429)
T ss_pred CCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCC---cCceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeE
Confidence 44 5655433221 14699999998887776543321 112222 4543333322111 247888888777665
Q ss_pred Ec
Q psy11771 313 LL 314 (347)
Q Consensus 313 ~~ 314 (347)
.+
T Consensus 325 ~l 326 (429)
T PRK03629 325 RI 326 (429)
T ss_pred Ee
Confidence 55
No 149
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=65.82 E-value=76 Score=27.49 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=73.5
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeC-CCCcEEeCCCCCCC-c-cceEEEEE-CCEEEEEcCcCCCCccceEEEEeCC
Q psy11771 138 TCSFDGLLYACGGYDGASCLSSMERYDP-LTGVWSSCPAMTTR-R-RYCRIAVV-ENCLYALGGFDSTNYQASVERLDPR 213 (347)
Q Consensus 138 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~-~~~~W~~~~~~~~~-r-~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~ 213 (347)
+...++.+++..-............+.. .-.+|+.....+.. . ...+.+.. ++.|+++--..... ...+.+...
T Consensus 114 i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~~~~S~D 191 (275)
T PF13088_consen 114 IQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIYISRSTD 191 (275)
T ss_dssp EEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEEEEEESS
T ss_pred eEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEEEEEECC
Confidence 3444777777621111111223333444 45569887655322 2 22333333 67888875432111 223333333
Q ss_pred -CCcEEecC--CCCCCCcceEEEEE-CCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCC---c-ceEEEEE-CC
Q psy11771 214 -MGKWAPVP--SMSSRRSSCGVAAL-DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRR---S-THEVVNI-EG 284 (347)
Q Consensus 214 -~~~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~---~-~~~~~~~-~~ 284 (347)
-.+|+... .+|.......++.+ ++.++++.........-.+..-.....+|.....+.... . +..++.. ++
T Consensus 192 ~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg 271 (275)
T PF13088_consen 192 GGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDG 271 (275)
T ss_dssp TTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETT
T ss_pred CCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCC
Confidence 35799754 45665555555554 568888776322211122333333367898775554333 3 3445555 67
Q ss_pred EEEE
Q psy11771 285 YLLT 288 (347)
Q Consensus 285 ~lyv 288 (347)
+|||
T Consensus 272 ~l~i 275 (275)
T PF13088_consen 272 KLYI 275 (275)
T ss_dssp EEEE
T ss_pred cCCC
Confidence 9986
No 150
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=65.78 E-value=1.1e+02 Score=27.91 Aligned_cols=161 Identities=12% Similarity=0.166 Sum_probs=79.8
Q ss_pred EEEEEE-C-CEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCC--CCCCccceEEEEE--CCEEEEEcCcCCCCccceE
Q psy11771 136 IGTCSF-D-GLLYACGGYDGASCLSSMERYDPLTGV--WSSCPA--MTTRRRYCRIAVV--ENCLYALGGFDSTNYQASV 207 (347)
Q Consensus 136 ~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~--~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 207 (347)
|++... + +.+|+.-= -.+.+++|+..... ...... ++..-....++.. +..+||+.-. .+++
T Consensus 147 H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-----s~~v 216 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-----SNTV 216 (345)
T ss_dssp EEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT-----TTEE
T ss_pred eeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC-----CCcE
Confidence 344444 3 45766521 13678888876665 544221 1211111122233 4589998643 2445
Q ss_pred EEEeCC--CCcEEec---CCCCCC---C-cceEEEEE--CCEEEEEcccCCCccCCeEEEEEC--CCCeEEEcCCCCCCC
Q psy11771 208 ERLDPR--MGKWAPV---PSMSSR---R-SSCGVAAL--DGAIYCVGGNDGTMCMSSGERFNV--RRNSWEPIAPMLSRR 274 (347)
Q Consensus 208 ~~yd~~--~~~W~~~---~~~p~~---r-~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~ 274 (347)
..|+.. +..++.+ +.+|.. . ....++.. +..||+.... .+++-+|+. .+++-+.+...+...
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~G 291 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTGG 291 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCCC
Confidence 555444 6666544 344322 2 22233333 3467886432 267777776 556666665554432
Q ss_pred cceEEEEE--C-CEEEEEeccCCCCCccEEEEE--eCCCCcEEEccC
Q psy11771 275 STHEVVNI--E-GYLLTMGGNDGSSSLNSVEKY--DPKLNKWQLLTP 316 (347)
Q Consensus 275 ~~~~~~~~--~-~~lyv~GG~~~~~~~~~v~~y--d~~~~~W~~~~~ 316 (347)
.....+.+ + +.||+.+..+ +.+.+| |+++..++.+..
T Consensus 292 ~~Pr~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 292 KFPRHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEE
T ss_pred CCccEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcEEEecc
Confidence 22333334 4 4566544322 345555 778989988763
No 151
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=65.01 E-value=2e+02 Score=30.87 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCC----------C---CCCcceEEEEE--CCEEEEEcccCCCccCCe
Q psy11771 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSM----------S---SRRSSCGVAAL--DGAIYCVGGNDGTMCMSS 253 (347)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----------p---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 253 (347)
++.+||.... ...++.||+.+........- + ....-..++.. ++.||+....+ +.
T Consensus 694 ~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~ 763 (1057)
T PLN02919 694 NEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SS 763 (1057)
T ss_pred CCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----Ce
Confidence 6789987542 25688888877655432110 0 00111223332 34599886543 68
Q ss_pred EEEEECCCCeEEEcC---C-CCC--------------CC--cceEEEEE-CCEEEEEeccCCCCCccEEEEEeCCCCcEE
Q psy11771 254 GERFNVRRNSWEPIA---P-MLS--------------RR--STHEVVNI-EGYLLTMGGNDGSSSLNSVEKYDPKLNKWQ 312 (347)
Q Consensus 254 v~~yd~~~~~W~~~~---~-~~~--------------~~--~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 312 (347)
+.+||+.++....+. + .+. .. .-.+++.- ++.|||....+ +.|.+||+.++...
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~ 838 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVT 838 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEE
Confidence 999998876533211 0 000 00 01123322 67899986542 47999999988777
Q ss_pred Ecc
Q psy11771 313 LLT 315 (347)
Q Consensus 313 ~~~ 315 (347)
.+.
T Consensus 839 tia 841 (1057)
T PLN02919 839 TLA 841 (1057)
T ss_pred EEe
Confidence 554
No 152
>KOG0318|consensus
Probab=64.04 E-value=70 Score=30.67 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=61.1
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCCC
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRMG 215 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~ 215 (347)
.++..++.-.++||.++ .+.+|......-.+..-....|...+.+.+ .+.-|++.|. ....+..||..++
T Consensus 449 vAv~~~~~~vaVGG~Dg-----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D----a~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDG-----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD----ASRKVVLYDVASR 519 (603)
T ss_pred EEEcCCCCEEEEecccc-----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec----cCCcEEEEEcccC
Confidence 33444667778888664 378888776554333333333444444444 3344444432 2356777777655
Q ss_pred cEEecC--CCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCC
Q psy11771 216 KWAPVP--SMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRR 261 (347)
Q Consensus 216 ~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 261 (347)
.= ... .+..+|...-+-.-++++...|+.+ ..+.+|+.+.
T Consensus 520 ~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD-----t~Viiysv~k 561 (603)
T KOG0318|consen 520 EV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD-----TNVIIYSVKK 561 (603)
T ss_pred ce-ecceeeeeeeeEEEEEeCCCceEEEecccc-----ceEEEEEccC
Confidence 42 111 1234444444444578888888876 5788887654
No 153
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=63.96 E-value=1e+02 Score=27.17 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=62.1
Q ss_pred EEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceE--EEEECCEEEEEcCcCCCCccceEEEEeCCCCc
Q psy11771 139 CSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCR--IAVVENCLYALGGFDSTNYQASVERLDPRMGK 216 (347)
Q Consensus 139 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 216 (347)
+.-++.+|...=. -+.+-..|+.+..=+.++.......... .+---+++++. ....-.+++|||.+.+
T Consensus 196 atpdGsvwyasla-----gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wit-----twg~g~l~rfdPs~~s 265 (353)
T COG4257 196 ATPDGSVWYASLA-----GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHRFDPSVTS 265 (353)
T ss_pred ECCCCcEEEEecc-----ccceEEcccccCCcceecCCCcccccccccccCccCcEEEe-----ccCCceeeEeCccccc
Confidence 3456777766211 1345666776664333322211011111 11224566664 1113578999999999
Q ss_pred EEecCC-CCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcC
Q psy11771 217 WAPVPS-MSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIA 268 (347)
Q Consensus 217 W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 268 (347)
|.+.+- -..+|-...-+--.+++++- +-..+.+.+||+++.+.+.++
T Consensus 266 W~eypLPgs~arpys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 266 WIEYPLPGSKARPYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred ceeeeCCCCCCCcceeeeccCCcEEee-----ccccCceeecCcccceEEEec
Confidence 988652 22444333333345677763 122367899999999887764
No 154
>PTZ00421 coronin; Provisional
Probab=63.87 E-value=1.5e+02 Score=28.78 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=53.7
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEE-----eCCCCCCCccce-EEEEE--CCEEEEEcCcCCCCccceEEEEeCC
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWS-----SCPAMTTRRRYC-RIAVV--ENCLYALGGFDSTNYQASVERLDPR 213 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~-----~~~~~~~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~ 213 (347)
++.+++.|+.+ ..+.+||..+.... .+..+....... +++.. ++.+++.||.+ ..+..||..
T Consensus 87 d~~~LaSgS~D-----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-----gtVrIWDl~ 156 (493)
T PTZ00421 87 DPQKLFTASED-----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-----MVVNVWDVE 156 (493)
T ss_pred CCCEEEEEeCC-----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC-----CEEEEEECC
Confidence 56677777755 35777777654321 111111111111 12222 23566666643 568889988
Q ss_pred CCcEE-ecCCCCCCCcceEEE-EECCEEEEEcccCCCccCCeEEEEECCCCe
Q psy11771 214 MGKWA-PVPSMSSRRSSCGVA-ALDGAIYCVGGNDGTMCMSSGERFNVRRNS 263 (347)
Q Consensus 214 ~~~W~-~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 263 (347)
+.+-. .+...... -.+++ ..++.+.+.|+.+ ..+..||+.+.+
T Consensus 157 tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~ 201 (493)
T PTZ00421 157 RGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT 201 (493)
T ss_pred CCeEEEEEcCCCCc--eEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence 76422 12111111 11222 2367777777765 578889998764
No 155
>KOG3637|consensus
Probab=63.41 E-value=2.1e+02 Score=30.56 Aligned_cols=165 Identities=17% Similarity=0.084 Sum_probs=92.2
Q ss_pred ccceEEEEECCEEEEEcCcCCCCccceEEEEeCC-----CCcEEecCCCCCC---CcceEEEE--E--CCEEEEEccc-C
Q psy11771 180 RRYCRIAVVENCLYALGGFDSTNYQASVERLDPR-----MGKWAPVPSMSSR---RSSCGVAA--L--DGAIYCVGGN-D 246 (347)
Q Consensus 180 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~-----~~~W~~~~~~p~~---r~~~~~~~--~--~~~iyv~GG~-~ 246 (347)
..+++++..++.-.++|.-+.....-.++.++.. ...+...+..... -.+.++++ . ++.+-++.|. .
T Consensus 211 Q~GfSa~~t~~~~v~lGApG~~~W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~sYLGYsV~~g~f~~~~~~~~VaGAPr 290 (1030)
T KOG3637|consen 211 QAGFSAAFTDEDGLVLGAPGAYYWKGGVFLYQSNLTLRHVTFINLLPENADRDDSYLGYSVAVGVFSGPGTISFVAGAPR 290 (1030)
T ss_pred ccccceeecCCCcEEEeCCccccccCeEEEeccccccccccccccCccccccccceeeEEEEeeeccCCCceEEEecCcc
Confidence 3456666664545567766555556677777753 1122222222221 11333321 1 2334444443 2
Q ss_pred CCccCCeEEEEECCCCeEEEcCCCC----CCCcceEEEEEC------CEEEEEec--cC--CCCCccEEEEEeCCC-CcE
Q psy11771 247 GTMCMSSGERFNVRRNSWEPIAPML----SRRSTHEVVNIE------GYLLTMGG--ND--GSSSLNSVEKYDPKL-NKW 311 (347)
Q Consensus 247 ~~~~~~~v~~yd~~~~~W~~~~~~~----~~~~~~~~~~~~------~~lyv~GG--~~--~~~~~~~v~~yd~~~-~~W 311 (347)
.......++.|+...+.|..+..+. -..+++++|+.| .- .++|- +. +......|++|=-.. ..|
T Consensus 291 ~~~~~G~v~if~~~~~~~~~~~~~~GeQ~GSYFG~sl~~vDlNgDG~tD-LLVGAP~y~~~~~~e~GrVYVy~~~~~~~~ 369 (1030)
T KOG3637|consen 291 YNHTGGKVYIFQLSGKSLRPLQVLRGEQIGSYFGYSLAAVDLNGDGLTD-LLVGAPLYFERDRYEVGRVYVYLNGGLGLF 369 (1030)
T ss_pred ccCcccEEEEEeccccccceeeeeeeeeehhhcCeeEEEEEcCCCCCcc-eEEecCccccCCCCcceEEEEEEecCCCCc
Confidence 2233368999999888888876543 345667777662 13 55563 21 222345688885444 333
Q ss_pred EEcc-----CCCCCcceeEEEEEcCCCcceEEEEcCCCC
Q psy11771 312 QLLT-----PMLTRRSSIGAAVLETLNIEKRLLVAPPAP 345 (347)
Q Consensus 312 ~~~~-----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 345 (347)
..-. .-+..|++.+.+.+++.+-..---||.|+|
T Consensus 370 ~~~~~L~~~~~~~~RFG~Ala~LGDlN~DG~nDVAVGAP 408 (1030)
T KOG3637|consen 370 PEQITLRGPGGPSGRFGSALAALGDLNQDGYNDVAVGAP 408 (1030)
T ss_pred ccceeEecCCCcccchhhhhhcccCcccCCCCceEEeCC
Confidence 3222 235679999999999988777766766665
No 156
>PRK04043 tolB translocation protein TolB; Provisional
Probab=63.27 E-value=1.4e+02 Score=28.24 Aligned_cols=147 Identities=7% Similarity=-0.069 Sum_probs=80.9
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG 237 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 237 (347)
.+++.+|..++.++++...+..-.......-+.+||+.....+ ...++.+|..+.+.+++..-.. ... ...-+|
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~--~~~-~~SPDG 330 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK--NNS-SVSTYK 330 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC--cCc-eECCCC
Confidence 5799999999988888655432122222222446777654322 3579999999888877653221 222 333344
Q ss_pred -EEEEEcccCCCc---cCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCCCCcEEE
Q psy11771 238 -AIYCVGGNDGTM---CMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQL 313 (347)
Q Consensus 238 -~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 313 (347)
.|..+....... ....++.+|+.++.++.+..-. ........-+|+..++-...+. ...+..++...+.=..
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~--~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQFPRFSSDGGSIMFIKYLGN--QSALGIIRLNYNKSFL 406 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcCCeEECCCCCEEEEEEccCC--cEEEEEEecCCCeeEE
Confidence 444443322111 2358999999999998887632 2222222235553333322211 2457777776654333
Q ss_pred c
Q psy11771 314 L 314 (347)
Q Consensus 314 ~ 314 (347)
+
T Consensus 407 l 407 (419)
T PRK04043 407 F 407 (419)
T ss_pred e
Confidence 3
No 157
>PRK10115 protease 2; Provisional
Probab=62.32 E-value=1.8e+02 Score=29.45 Aligned_cols=148 Identities=11% Similarity=0.036 Sum_probs=78.4
Q ss_pred CeEEEEeC--CCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCC-CCcEEecCCCCCCCcceEEEE
Q psy11771 158 SSMERYDP--LTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPR-MGKWAPVPSMSSRRSSCGVAA 234 (347)
Q Consensus 158 ~~~~~~d~--~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~p~~r~~~~~~~ 234 (347)
+.++.++. .+..|..+-+.+.. ..+.....++.+|+.--.+ .....+...+.. ..+|+.+-+....+.--.+..
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 323 (686)
T PRK10115 247 SEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTL 323 (686)
T ss_pred ccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEECCCCCCEEEEEEE
Confidence 45777773 23343322222222 2223445578888875432 223446666766 578988765433333334555
Q ss_pred ECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE----C-CEEEEE-eccCCCCCccEEEEEeCCC
Q psy11771 235 LDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI----E-GYLLTM-GGNDGSSSLNSVEKYDPKL 308 (347)
Q Consensus 235 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~----~-~~lyv~-GG~~~~~~~~~v~~yd~~~ 308 (347)
.++.|++..-.++ ...++.+|..+.....+. ++.+... +.+.. + +.+++. .+. ..-.+++.||+.+
T Consensus 324 ~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~~~~ss~---~~P~~~y~~d~~~ 395 (686)
T PRK10115 324 FTDWLVVEERQRG---LTSLRQINRKTREVIGIA-FDDPAYV-TWIAYNPEPETSRLRYGYSSM---TTPDTLFELDMDT 395 (686)
T ss_pred ECCEEEEEEEeCC---EEEEEEEcCCCCceEEec-CCCCceE-eeecccCCCCCceEEEEEecC---CCCCEEEEEECCC
Confidence 6777777653322 256888887665555544 1112221 11111 1 344432 232 2246899999999
Q ss_pred CcEEEccC
Q psy11771 309 NKWQLLTP 316 (347)
Q Consensus 309 ~~W~~~~~ 316 (347)
++|+.+..
T Consensus 396 ~~~~~l~~ 403 (686)
T PRK10115 396 GERRVLKQ 403 (686)
T ss_pred CcEEEEEe
Confidence 99988764
No 158
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.40 E-value=25 Score=20.40 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=17.0
Q ss_pred eEEEEECCEEEEEcccCCCccCCeEEEEECCC
Q psy11771 230 CGVAALDGAIYCVGGNDGTMCMSSGERFNVRR 261 (347)
Q Consensus 230 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 261 (347)
.+.++.++.+|+.+.. ..++++|+++
T Consensus 15 ~~~~v~~g~vyv~~~d------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC------CEEEEEeCCC
Confidence 3447778999987663 5889998864
No 159
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=60.96 E-value=1.4e+02 Score=27.74 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=61.0
Q ss_pred cceEEEEeCCCC-----cEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCe---EE-EcCCCCCCC
Q psy11771 204 QASVERLDPRMG-----KWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNS---WE-PIAPMLSRR 274 (347)
Q Consensus 204 ~~~~~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~-~~~~~~~~~ 274 (347)
.+.++..|.... .|..+.+-... ....+...++.+|+.-.. ......+..++..+.. |. .+.+-....
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEcCCCCce
Confidence 478899999875 78887652222 233445568999987553 3334688899988765 66 444433333
Q ss_pred cceEEEEECCEEEEEeccCCCCCccEEEEEeCC
Q psy11771 275 STHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPK 307 (347)
Q Consensus 275 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 307 (347)
.--.+...++.|++..=.+. ...+.+||..
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~~---~~~l~v~~~~ 357 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYRENG---SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETTEEEEEEEETT---EEEEEEEETT
T ss_pred eEEEEEEECCEEEEEEEECC---ccEEEEEECC
Confidence 44455566888888754332 4579999998
No 160
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=58.93 E-value=1.6e+02 Score=27.62 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=48.3
Q ss_pred EeCCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeE-----EEcCCCCCCCcc-eEEEEE-
Q psy11771 210 LDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSW-----EPIAPMLSRRST-HEVVNI- 282 (347)
Q Consensus 210 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-----~~~~~~~~~~~~-~~~~~~- 282 (347)
.|.....|+.+......+........++.++++|.. ..+..-+.....| ..+.- +..+.. .+++..
T Consensus 265 ~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~~-~~~~~~l~~v~~~~ 337 (398)
T PLN00033 265 WEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG------GGLYVSKGTGLTEEDFDFEEADI-KSRGFGILDVGYRS 337 (398)
T ss_pred cCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC------ceEEEecCCCCcccccceeeccc-CCCCcceEEEEEcC
Confidence 444444598876544333322223457888888743 2333333333334 44332 212222 233333
Q ss_pred CCEEEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 283 EGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 283 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
++.+++.|... .+..-...-++|+.+.
T Consensus 338 d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 338 KKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred CCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 67888888631 3445556677899875
No 161
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=56.52 E-value=1e+02 Score=24.57 Aligned_cols=82 Identities=11% Similarity=0.081 Sum_probs=48.0
Q ss_pred EEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCc----ceEEEEE-CCEEEEEeccCCCCCccEEEEEe--
Q psy11771 233 AALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRS----THEVVNI-EGYLLTMGGNDGSSSLNSVEKYD-- 305 (347)
Q Consensus 233 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~----~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd-- 305 (347)
+.++|.+|=++..........+..||..+.+....-++|.... ...+.++ +++|-++--... ...-+||+-+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~-~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDE-TSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccC-CccEEEEEEeee
Confidence 5678888777655433322268999999999943334443322 2333233 778888743211 1124677765
Q ss_pred -CCCCcEEEcc
Q psy11771 306 -PKLNKWQLLT 315 (347)
Q Consensus 306 -~~~~~W~~~~ 315 (347)
....+|+++-
T Consensus 81 ~~~~~SWtK~~ 91 (164)
T PF07734_consen 81 GYGKESWTKLF 91 (164)
T ss_pred ccCcceEEEEE
Confidence 2377899864
No 162
>KOG1036|consensus
Probab=55.53 E-value=1.5e+02 Score=26.38 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=59.1
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCc
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGK 216 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 216 (347)
..+..+..=.++||.+ ..+-+||..+..=.++..-..+-....-. ......|.||.+ ..+..+|+....
T Consensus 59 ~c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~~~vIsgsWD-----~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 59 DCAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEVGCVISGSWD-----KTIKFWDPRNKV 127 (323)
T ss_pred eeeccCCceEEEeccC-----ceEEEEEecCCcceeeccCCCceEEEEee-ccCCeEEEcccC-----ccEEEEeccccc
Confidence 3444455556677765 35888999887755554433221111111 234455777765 668889988621
Q ss_pred EEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCe
Q psy11771 217 WAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNS 263 (347)
Q Consensus 217 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 263 (347)
.....-.+..-.++-+.+++ .++|+.+ ..+..||+.+..
T Consensus 128 --~~~~~d~~kkVy~~~v~g~~-LvVg~~~-----r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 128 --VVGTFDQGKKVYCMDVSGNR-LVVGTSD-----RKVLIYDLRNLD 166 (323)
T ss_pred --cccccccCceEEEEeccCCE-EEEeecC-----ceEEEEEccccc
Confidence 11122233333444444554 5555543 578889887643
No 163
>KOG0266|consensus
Probab=53.33 E-value=2.1e+02 Score=27.29 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=51.0
Q ss_pred CeEEEEeCCCC-c-EEeCCCCCCCccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEE
Q psy11771 158 SSMERYDPLTG-V-WSSCPAMTTRRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAA 234 (347)
Q Consensus 158 ~~~~~~d~~~~-~-W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 234 (347)
..+.++|...+ . -+.+....... ++++.. .+.+++.|+.+ .++..+|..+.+-.. .+......-..+.
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~~~~--~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGECVR--KLKGHSDGISGLA 295 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-----CcEEEEeccCCeEEE--eeeccCCceEEEE
Confidence 45777887333 2 23333333333 333332 45788888755 568889998744322 2222222222233
Q ss_pred --ECCEEEEEcccCCCccCCeEEEEECCCCeE
Q psy11771 235 --LDGAIYCVGGNDGTMCMSSGERFNVRRNSW 264 (347)
Q Consensus 235 --~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 264 (347)
-++.+++.+..+ ..+..||..+..-
T Consensus 296 f~~d~~~l~s~s~d-----~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 296 FSPDGNLLVSASYD-----GTIRVWDLETGSK 322 (456)
T ss_pred ECCCCCEEEEcCCC-----ccEEEEECCCCce
Confidence 356777777553 5688899988763
No 164
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=52.38 E-value=2e+02 Score=26.90 Aligned_cols=137 Identities=12% Similarity=0.070 Sum_probs=65.0
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCC-CCccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCC
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMT-TRRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRM 214 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~ 214 (347)
++...++..|++|-. ..+..=+-.-++|+.++..+ .+-.......+ ++..+++|.. ..+++-+-.-
T Consensus 141 ~v~f~~~~g~~vG~~------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~------G~v~~S~D~G 208 (398)
T PLN00033 141 SISFKGKEGWIIGKP------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE------GAIYVTSNAG 208 (398)
T ss_pred eeEEECCEEEEEcCc------eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEecc------ceEEEECCCC
Confidence 344456778877531 12333333457898775421 11112233334 4567777742 2355545455
Q ss_pred CcEEecCCCC----CCCc--------------ceEEEE-ECCEEEEEcccCCCccCCeEEE-EECCCCeEEEcCCCCCCC
Q psy11771 215 GKWAPVPSMS----SRRS--------------SCGVAA-LDGAIYCVGGNDGTMCMSSGER-FNVRRNSWEPIAPMLSRR 274 (347)
Q Consensus 215 ~~W~~~~~~p----~~r~--------------~~~~~~-~~~~iyv~GG~~~~~~~~~v~~-yd~~~~~W~~~~~~~~~~ 274 (347)
.+|+.+...+ ..+. ...+.. -++.++++|-. -.+++ .|.....|+.+..-...+
T Consensus 209 ~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~------G~~~~s~d~G~~~W~~~~~~~~~~ 282 (398)
T PLN00033 209 RNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR------GNFYLTWEPGQPYWQPHNRASARR 282 (398)
T ss_pred CCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC------ccEEEecCCCCcceEEecCCCccc
Confidence 7898862211 1100 011111 23445555432 23333 344444588886544333
Q ss_pred cceEEEEECCEEEEEec
Q psy11771 275 STHEVVNIEGYLLTMGG 291 (347)
Q Consensus 275 ~~~~~~~~~~~lyv~GG 291 (347)
.......-++.++++|.
T Consensus 283 l~~v~~~~dg~l~l~g~ 299 (398)
T PLN00033 283 IQNMGWRADGGLWLLTR 299 (398)
T ss_pred eeeeeEcCCCCEEEEeC
Confidence 32222334788888874
No 165
>KOG2445|consensus
Probab=52.02 E-value=1.7e+02 Score=26.28 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=32.5
Q ss_pred CEEEEEcccCCCccCCe--EEEEECCCCeEEEcCCCC--------------CCCcceEEEEE-CCEEEEE
Q psy11771 237 GAIYCVGGNDGTMCMSS--GERFNVRRNSWEPIAPML--------------SRRSTHEVVNI-EGYLLTM 289 (347)
Q Consensus 237 ~~iyv~GG~~~~~~~~~--v~~yd~~~~~W~~~~~~~--------------~~~~~~~~~~~-~~~lyv~ 289 (347)
..++++|..+.....++ +|.|+...++|.+++.++ .+|.+|-.++. .+-|+|+
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~ 253 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIF 253 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEE
Confidence 35677776654444444 556677778999987654 35667766554 3315554
No 166
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.76 E-value=1.5e+02 Score=25.02 Aligned_cols=162 Identities=17% Similarity=0.200 Sum_probs=92.5
Q ss_pred EEEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--EEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEe
Q psy11771 134 FAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLD 211 (347)
Q Consensus 134 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd 211 (347)
+..+....++++|.--|.-+. +.+.++|..+.+ |++--+ |...++-+++..++.+|..-=. ....+.||
T Consensus 47 fTQGL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~-----egvaf~~d 117 (262)
T COG3823 47 FTQGLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWK-----EGVAFKYD 117 (262)
T ss_pred hhcceeeeCCEEEEecccccc---ceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEec-----cceeEEEC
Confidence 445888889999998887553 568889988654 543211 2344566788889999987422 13467788
Q ss_pred CCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEE---EcC--CCCCCCcceEEEEECCEE
Q psy11771 212 PRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWE---PIA--PMLSRRSTHEVVNIEGYL 286 (347)
Q Consensus 212 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~---~~~--~~~~~~~~~~~~~~~~~l 286 (347)
+. +.+.+...+-.-.+-+++.-+..|.+--|. ..+..-||++..=. .+. ..|.... --.-.++|.|
T Consensus 118 ~~--t~~~lg~~~y~GeGWgLt~d~~~LimsdGs------atL~frdP~tfa~~~~v~VT~~g~pv~~L-NELE~VdG~l 188 (262)
T COG3823 118 AD--TLEELGRFSYEGEGWGLTSDDKNLIMSDGS------ATLQFRDPKTFAELDTVQVTDDGVPVSKL-NELEWVDGEL 188 (262)
T ss_pred hH--HhhhhcccccCCcceeeecCCcceEeeCCc------eEEEecCHHHhhhcceEEEEECCeecccc-cceeeeccEE
Confidence 75 444555555554555666666666665553 45555566653211 000 1111100 0112234444
Q ss_pred EEEeccCCCCCccEEEEEeCCCCc---EEEccCCC
Q psy11771 287 LTMGGNDGSSSLNSVEKYDPKLNK---WQLLTPML 318 (347)
Q Consensus 287 yv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~~ 318 (347)
|. +.-..+.|-+.||.+.+ |.+++.++
T Consensus 189 yA-----NVw~t~~I~rI~p~sGrV~~widlS~L~ 218 (262)
T COG3823 189 YA-----NVWQTTRIARIDPDSGRVVAWIDLSGLL 218 (262)
T ss_pred EE-----eeeeecceEEEcCCCCcEEEEEEccCCc
Confidence 43 11124568888888875 88888754
No 167
>KOG1332|consensus
Probab=50.43 E-value=1.7e+02 Score=25.38 Aligned_cols=53 Identities=17% Similarity=0.385 Sum_probs=30.0
Q ss_pred ECCCCeEEEc--CCCCCCCcceEEEEECC-EEEEEeccCCCCCccEEEEEeCCCC-cEEEccCC
Q psy11771 258 NVRRNSWEPI--APMLSRRSTHEVVNIEG-YLLTMGGNDGSSSLNSVEKYDPKLN-KWQLLTPM 317 (347)
Q Consensus 258 d~~~~~W~~~--~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~ 317 (347)
+.+.++|+.- .+.|.+ ..+..-.+-| .|-+-||. +.+.++-+..+ +|++++..
T Consensus 241 ~~e~e~wk~tll~~f~~~-~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDV-VWRVSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred cCccCcccccccccCCcc-eEEEEEeccccEEEEecCC------cEEEEEEeCCCCcEEEcccc
Confidence 4445677653 344444 3344445544 44444552 46778876655 99998753
No 168
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.79 E-value=1.7e+02 Score=24.83 Aligned_cols=98 Identities=9% Similarity=0.132 Sum_probs=56.8
Q ss_pred EEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCC-CCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCC
Q psy11771 184 RIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMS-SRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRN 262 (347)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 262 (347)
+....++++|.--|.-+ .+.+.++|..+.+=..-.+++ ....+-+.+.+++.+|..-=.+ ...+.||+.+
T Consensus 50 GL~~~~g~i~esTG~yg---~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e-----gvaf~~d~~t- 120 (262)
T COG3823 50 GLEYLDGHILESTGLYG---FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE-----GVAFKYDADT- 120 (262)
T ss_pred ceeeeCCEEEEeccccc---cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc-----ceeEEEChHH-
Confidence 45566888888776544 377899999866532222333 3445667788899999873211 2345566544
Q ss_pred eEEEcCCCCCCCcceEEEEECCEEEEEec
Q psy11771 263 SWEPIAPMLSRRSTHEVVNIEGYLLTMGG 291 (347)
Q Consensus 263 ~W~~~~~~~~~~~~~~~~~~~~~lyv~GG 291 (347)
.+.+...+..-.+.+.+.-+..|..--|
T Consensus 121 -~~~lg~~~y~GeGWgLt~d~~~LimsdG 148 (262)
T COG3823 121 -LEELGRFSYEGEGWGLTSDDKNLIMSDG 148 (262)
T ss_pred -hhhhcccccCCcceeeecCCcceEeeCC
Confidence 3344444544455555555545444434
No 169
>KOG0646|consensus
Probab=47.72 E-value=2.5e+02 Score=26.56 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=17.7
Q ss_pred EEECCEEEEEeccCCCCCccEEEEEeCCCCc
Q psy11771 280 VNIEGYLLTMGGNDGSSSLNSVEKYDPKLNK 310 (347)
Q Consensus 280 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 310 (347)
+..++.+.+.|+.++ .+-++|+.+.+
T Consensus 285 is~DgtlLlSGd~dg-----~VcvWdi~S~Q 310 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDG-----KVCVWDIYSKQ 310 (476)
T ss_pred EecCccEEEeeCCCC-----CEEEEecchHH
Confidence 344899999999765 35566665543
No 170
>KOG0647|consensus
Probab=47.56 E-value=2.1e+02 Score=25.60 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=55.3
Q ss_pred CeEEEEeCCCCcEEeCCCCCCC-ccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTR-RRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD 236 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 236 (347)
+++-.+|+.+++-.+++.-..+ |..+-+-..+-.+.+.|.. .+++-.+|+....=...-.||. | ..++-+..
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSW-----DKTlKfWD~R~~~pv~t~~LPe-R-vYa~Dv~~ 166 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSW-----DKTLKFWDTRSSNPVATLQLPE-R-VYAADVLY 166 (347)
T ss_pred CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEeccc-----ccceeecccCCCCeeeeeeccc-e-eeehhccC
Confidence 4577899999987776544333 2222211112244555543 3567777876433111112333 2 23333333
Q ss_pred CEEEEEcccCCCccCCeEEEEECCCCeE--EEcC-CCCCCCcceEEEEECCEEEEEecc
Q psy11771 237 GAIYCVGGNDGTMCMSSGERFNVRRNSW--EPIA-PMLSRRSTHEVVNIEGYLLTMGGN 292 (347)
Q Consensus 237 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~-~~~~~~~~~~~~~~~~~lyv~GG~ 292 (347)
..+.|.-+ -+.+.+|++++..= ..+. ++.... ...++.-+...|.+|+.
T Consensus 167 pm~vVata------~r~i~vynL~n~~te~k~~~SpLk~Q~-R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 167 PMAVVATA------ERHIAVYNLENPPTEFKRIESPLKWQT-RCVACFQDKDGFALGSI 218 (347)
T ss_pred ceeEEEec------CCcEEEEEcCCCcchhhhhcCccccee-eEEEEEecCCceEeeee
Confidence 33332212 15677888765532 2221 222111 11222335666777764
No 171
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=47.49 E-value=33 Score=24.55 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHHhc-cccccccccCCCChHHHHHhccccccc-ccChhHHHHHH
Q psy11771 48 SSCGNYILPTAWVSVA-LQLLRHVKLPLLARDFLMNSVESESLI-KESTECQELLL 101 (347)
Q Consensus 48 ~E~~v~~~~~~Wv~~~-~~ll~~vr~~~l~~~~l~~~l~~~~l~-~~~~~~~~~~~ 101 (347)
+..++.+++.+++..+ .++.+.-.|..++.+.+...++++.+. .......+.+.
T Consensus 12 ~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~ 67 (103)
T PF07707_consen 12 GLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVL 67 (103)
T ss_dssp T-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHH
Confidence 4567888999999999 888888899999999999999999984 44444333433
No 172
>KOG3545|consensus
Probab=47.07 E-value=1.9e+02 Score=25.01 Aligned_cols=182 Identities=14% Similarity=0.166 Sum_probs=96.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeC----CCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCc-
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDP----LTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGK- 216 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~----~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~- 216 (347)
++++|++.+..+ ..+.-|.. ....+...-.+|.+-.+.+-++.++.+|.-.+. .+.+.+||..+..
T Consensus 30 ~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~-----t~~ivky~l~~~~~ 100 (249)
T KOG3545|consen 30 DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAG-----TRNIIKYDLETRTV 100 (249)
T ss_pred cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccC-----CcceEEEEeeccee
Confidence 568888844332 34454544 334455555677777777778888888887642 3668888887732
Q ss_pred --EEecCCCC---------CCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCC----CeEEEcCCCCCCCcceEEEE
Q psy11771 217 --WAPVPSMS---------SRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRR----NSWEPIAPMLSRRSTHEVVN 281 (347)
Q Consensus 217 --W~~~~~~p---------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~~~~~~~~~ 281 (347)
|..++.+. .+......++-.+-++++=-..+....-.+-+.|+.+ .+|..- ++ .+....+..
T Consensus 101 ~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~--~~-k~~~~~aF~ 177 (249)
T KOG3545|consen 101 AGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTT--LP-KRSAGNAFM 177 (249)
T ss_pred eeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccc--cC-CCCcCceEE
Confidence 44554321 1111233444444455552221111111235566643 345321 11 222334555
Q ss_pred ECCEEEEEeccCCCCCccEE-EEEeCCCCcEEEccCCCCCcceeEEEEEcCCCcceEE
Q psy11771 282 IEGYLLTMGGNDGSSSLNSV-EKYDPKLNKWQLLTPMLTRRSSIGAAVLETLNIEKRL 338 (347)
Q Consensus 282 ~~~~lyv~GG~~~~~~~~~v-~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 338 (347)
+=|.||++-...... ..| ++||..+++=+. ..+|-+.....+..++-+..+.++
T Consensus 178 iCGvLY~v~S~~~~~--~~i~yaydt~~~~~~~-~~ipf~N~y~~~~~idYNP~D~~L 232 (249)
T KOG3545|consen 178 ICGVLYVVHSYNCTH--TQISYAYDTTTGTQER-IDLPFPNPYSYATMIDYNPRDRRL 232 (249)
T ss_pred EeeeeEEEeccccCC--ceEEEEEEcCCCceec-ccccccchhhhhhccCCCccccee
Confidence 668889987654332 234 799999887643 345555554444555544444443
No 173
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=46.75 E-value=1.4e+02 Score=23.24 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=39.4
Q ss_pred CEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccEEEEEeCCCCc--E
Q psy11771 237 GAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI---EGYLLTMGGNDGSSSLNSVEKYDPKLNK--W 311 (347)
Q Consensus 237 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W 311 (347)
..+.++|-. +.+..||.++++=-.-..++.+........+ ...+.++||. -.++-||-+-++ |
T Consensus 64 ~D~LliGt~------t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn------csi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 64 RDCLLIGTQ------TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN------CSIQGFDYEGNEIFW 131 (136)
T ss_pred cCEEEEecc------ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce------EEEEEeCCCCcEEEE
Confidence 456666653 6899999998863333344433322222222 4678899993 468888876654 6
Q ss_pred EEc
Q psy11771 312 QLL 314 (347)
Q Consensus 312 ~~~ 314 (347)
+..
T Consensus 132 tVt 134 (136)
T PF14781_consen 132 TVT 134 (136)
T ss_pred Eec
Confidence 543
No 174
>KOG0266|consensus
Probab=46.74 E-value=2.7e+02 Score=26.58 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=71.6
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEE---
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWA--- 218 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~--- 218 (347)
.+++++.|+.+ ..+.++|..+.+-...-..............++.+++.+..+ ..+..||..+..-.
T Consensus 257 ~g~~i~Sgs~D-----~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d-----~~i~vwd~~~~~~~~~~ 326 (456)
T KOG0266|consen 257 DGNLLVSGSDD-----GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD-----GTIRVWDLETGSKLCLK 326 (456)
T ss_pred CCCEEEEecCC-----CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC-----ccEEEEECCCCceeeee
Confidence 34777777755 457888888854332211111112212222356677766543 56888999877632
Q ss_pred ecCCCCCCCcceEEEE-ECCEEEEEcccCCCccCCeEEEEECCCCe----EEEcCCCCCCCcceEEEEE-CCEEEEEecc
Q psy11771 219 PVPSMSSRRSSCGVAA-LDGAIYCVGGNDGTMCMSSGERFNVRRNS----WEPIAPMLSRRSTHEVVNI-EGYLLTMGGN 292 (347)
Q Consensus 219 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~ 292 (347)
.+.....+.....+.. -+++..+.+..+ +.+-.||..... |...... .++....+.. +++..+.|+.
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~d-----~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKYLLSASLD-----RTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred cccCCCCCCceeEEEECCCCcEEEEecCC-----CeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEeC
Confidence 2232222211122222 244444444332 244455555432 2222222 1344344434 5665665654
Q ss_pred CCCCCccEEEEEeCCC
Q psy11771 293 DGSSSLNSVEKYDPKL 308 (347)
Q Consensus 293 ~~~~~~~~v~~yd~~~ 308 (347)
+ ..+++||+.+
T Consensus 400 d-----~~v~~~~~~s 410 (456)
T KOG0266|consen 400 D-----GSVYVWDSSS 410 (456)
T ss_pred C-----ceEEEEeCCc
Confidence 3 3689999887
No 175
>KOG0318|consensus
Probab=46.66 E-value=2.8e+02 Score=26.83 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=40.8
Q ss_pred ECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccEEEEEeCCCC
Q psy11771 235 LDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI--EGYLLTMGGNDGSSSLNSVEKYDPKLN 309 (347)
Q Consensus 235 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 309 (347)
.++...++||.+ ..++.|.+..+.-.....+...|...+.+.+ +++.+..|.. ...+..||..++
T Consensus 453 ~~~~~vaVGG~D-----gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-----~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 453 PDGSEVAVGGQD-----GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-----SRKVVLYDVASR 519 (603)
T ss_pred CCCCEEEEeccc-----ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-----CCcEEEEEcccC
Confidence 467888899976 3588888877664444444444455555555 4555555543 246788887655
No 176
>KOG0263|consensus
Probab=46.54 E-value=3.2e+02 Score=27.52 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=50.9
Q ss_pred EECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEE-ECCEEEEEcccCCCccCCeEEEEECCCCeEE
Q psy11771 187 VVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAA-LDGAIYCVGGNDGTMCMSSGERFNVRRNSWE 265 (347)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 265 (347)
.+-|.-|++.|.. ..++-.+|..+..=.++=.-.... -.+++. -.|+-.+.|+.+ ..+-.||..+.+
T Consensus 543 FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~~-V~al~~Sp~Gr~LaSg~ed-----~~I~iWDl~~~~-- 610 (707)
T KOG0263|consen 543 FHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKGP-VTALAFSPCGRYLASGDED-----GLIKIWDLANGS-- 610 (707)
T ss_pred ECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCCc-eEEEEEcCCCceEeecccC-----CcEEEEEcCCCc--
Confidence 3345556665521 245666776665544432111111 223333 255544444443 456677877653
Q ss_pred EcCCCCCCCcceEE--EEECCEEEEEeccCCCCCccEEEEEeCC
Q psy11771 266 PIAPMLSRRSTHEV--VNIEGYLLTMGGNDGSSSLNSVEKYDPK 307 (347)
Q Consensus 266 ~~~~~~~~~~~~~~--~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 307 (347)
.+..+..-...-.. ...+|.+++.||.+ +++..||..
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D-----nsV~lWD~~ 649 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGNVLASGGAD-----NSVRLWDLT 649 (707)
T ss_pred chhhhhcccCceeEEEEecCCCEEEecCCC-----CeEEEEEch
Confidence 22222111111112 23489999999865 356677654
No 177
>PTZ00420 coronin; Provisional
Probab=46.39 E-value=3.1e+02 Score=27.18 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=50.3
Q ss_pred EEEEEcCcCCCCccceEEEEeCCCCcEE-ecCCCCCCCcceEEE-EECCEEEEEcccCCCccCCeEEEEECCCCeEEEcC
Q psy11771 191 CLYALGGFDSTNYQASVERLDPRMGKWA-PVPSMSSRRSSCGVA-ALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIA 268 (347)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 268 (347)
.+++.||.+ ..+..||..+.+=. .+. .+. .-.++. ..+|.+++.++.+ ..+..||+.+.+= +.
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~~i~-~~~--~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~--i~ 203 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAFQIN-MPK--KLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEI--AS 203 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEEEEe-cCC--cEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcE--EE
Confidence 455556543 46788898776411 111 111 112222 2367777776643 5788999987642 22
Q ss_pred CCC--CCCcceEEEE-----ECCEEEEEeccCCCCCccEEEEEeCCC
Q psy11771 269 PML--SRRSTHEVVN-----IEGYLLTMGGNDGSSSLNSVEKYDPKL 308 (347)
Q Consensus 269 ~~~--~~~~~~~~~~-----~~~~lyv~GG~~~~~~~~~v~~yd~~~ 308 (347)
.+. ........+. -++..++.+|.++. ....+..||...
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~ 249 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKN 249 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCC
Confidence 111 1111111111 24455566665442 124688888764
No 178
>KOG0281|consensus
Probab=46.33 E-value=1.1e+02 Score=27.84 Aligned_cols=95 Identities=6% Similarity=0.176 Sum_probs=57.0
Q ss_pred EEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeE
Q psy11771 185 IAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSW 264 (347)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 264 (347)
++-.+++.+|... + ..++-++++.+.+. +..+.--+.+.++.-++|++.|-|..+ +++-.||.+.+.-
T Consensus 325 vVdfd~kyIVsAS-g----DRTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSSD-----ntIRlwdi~~G~c 392 (499)
T KOG0281|consen 325 VVDFDDKYIVSAS-G----DRTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGAC 392 (499)
T ss_pred eeccccceEEEec-C----CceEEEEeccceee--ehhhhcccccceehhccCeEEEecCCC-----ceEEEEeccccHH
Confidence 3444666444322 1 25677778776654 334555555677788999998887754 5777788876643
Q ss_pred EEcCCCCCCCc-ceEEEEECCEEEEEeccCC
Q psy11771 265 EPIAPMLSRRS-THEVVNIEGYLLTMGGNDG 294 (347)
Q Consensus 265 ~~~~~~~~~~~-~~~~~~~~~~lyv~GG~~~ 294 (347)
-.+- .+.. -..++.++++=.+-||+++
T Consensus 393 LRvL---eGHEeLvRciRFd~krIVSGaYDG 420 (499)
T KOG0281|consen 393 LRVL---EGHEELVRCIRFDNKRIVSGAYDG 420 (499)
T ss_pred HHHH---hchHHhhhheeecCceeeeccccc
Confidence 2221 1100 0124667888888888765
No 179
>KOG2048|consensus
Probab=45.43 E-value=3.2e+02 Score=27.19 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=31.9
Q ss_pred CeEEEEeCCCCcEEeCCCC--CCCccceEEEEE-CCEEEEEcCcCCCCccceEEEEeCCCC
Q psy11771 158 SSMERYDPLTGVWSSCPAM--TTRRRYCRIAVV-ENCLYALGGFDSTNYQASVERLDPRMG 215 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~--~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~ 215 (347)
..++.|++.. .|-.-+.+ |..|.--+.+-. +++||-+|+. .++-.||+.+.
T Consensus 47 g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s------g~i~EwDl~~l 100 (691)
T KOG2048|consen 47 GNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS------GSITEWDLHTL 100 (691)
T ss_pred CcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCC------ceEEEEecccC
Confidence 4699999977 57554433 444554455555 8899999874 33444555443
No 180
>KOG2048|consensus
Probab=44.93 E-value=3.3e+02 Score=27.14 Aligned_cols=149 Identities=14% Similarity=0.086 Sum_probs=79.5
Q ss_pred EEEEEECCEEEEEcccCCCCCCCeEEEEeCCCC-cEEeCCCCCCCccceEEE---EECCEEEEEcCcCCCCccceEEEEe
Q psy11771 136 IGTCSFDGLLYACGGYDGASCLSSMERYDPLTG-VWSSCPAMTTRRRYCRIA---VVENCLYALGGFDSTNYQASVERLD 211 (347)
Q Consensus 136 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~~~~r~~~~~~---~~~~~lyv~GG~~~~~~~~~~~~yd 211 (347)
+++...++.+.++|-.. .-.++...+..+ +-..+..+|..+...+.. .-++++++.. ....+++.++
T Consensus 387 ~~aiSPdg~~Ia~st~~----~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~e 457 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTVS----RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFE 457 (691)
T ss_pred eeccCCCCCEEEEeecc----ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-----cccceeEEEE
Confidence 35555666776665521 123444444332 223445566555433332 2367887775 1235677888
Q ss_pred CCCCcEEecCCCC-C----CCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEE----E
Q psy11771 212 PRMGKWAPVPSMS-S----RRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVN----I 282 (347)
Q Consensus 212 ~~~~~W~~~~~~p-~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~----~ 282 (347)
..+.+..++.+.. . +.+.......++.|-++++. ..+++|+.++.+-..+.+.+. ...+++. .
T Consensus 458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~~~~~l~~rln--~~vTa~~~~~~~ 529 (691)
T KOG2048|consen 458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYNLETLESHLLKVRLN--IDVTAAAFSPFV 529 (691)
T ss_pred ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc------ceEEEEEcccceeecchhccC--cceeeeeccccc
Confidence 7777766664432 2 11111222246777777754 689999999988776653222 1122222 2
Q ss_pred CCEEEEEeccCCCCCccEEEEEeCC
Q psy11771 283 EGYLLTMGGNDGSSSLNSVEKYDPK 307 (347)
Q Consensus 283 ~~~lyv~GG~~~~~~~~~v~~yd~~ 307 (347)
.++|.+.-- .+.++.||.+
T Consensus 530 ~~~lvvats------~nQv~efdi~ 548 (691)
T KOG2048|consen 530 RNRLVVATS------NNQVFEFDIE 548 (691)
T ss_pred cCcEEEEec------CCeEEEEecc
Confidence 355665432 2467788873
No 181
>PTZ00420 coronin; Provisional
Probab=44.65 E-value=3.2e+02 Score=27.00 Aligned_cols=151 Identities=13% Similarity=0.179 Sum_probs=70.2
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCcE-EeCCCCCCCccceEEEE-ECCEEEEEcCcCCCCccceEEEEeCCCCcEE-e
Q psy11771 143 GLLYACGGYDGASCLSSMERYDPLTGVW-SSCPAMTTRRRYCRIAV-VENCLYALGGFDSTNYQASVERLDPRMGKWA-P 219 (347)
Q Consensus 143 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~-~ 219 (347)
..+++.||.+ ..+.++|..+.+- ..+. .+ ..-.+++. .++.+++.++.+ ..+..||+.+.+=. .
T Consensus 138 ~~iLaSgS~D-----gtIrIWDl~tg~~~~~i~-~~--~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 138 YYIMCSSGFD-----SFVNIWDIENEKRAFQIN-MP--KKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIASS 204 (568)
T ss_pred CeEEEEEeCC-----CeEEEEECCCCcEEEEEe-cC--CcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEEEE
Confidence 3455666654 4577888877641 1111 11 11122222 366777766533 56889999875421 1
Q ss_pred cCCCCCCCcceEE--EE--ECCEEEEEcccCCCccCCeEEEEECCCC-eEEEcCCCCCCCcceEEE-EE---CCEEEEEe
Q psy11771 220 VPSMSSRRSSCGV--AA--LDGAIYCVGGNDGTMCMSSGERFNVRRN-SWEPIAPMLSRRSTHEVV-NI---EGYLLTMG 290 (347)
Q Consensus 220 ~~~~p~~r~~~~~--~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~-~~---~~~lyv~G 290 (347)
+..-...+..... .. -++...+.+|+++.. ...+..||..+. +-...-.+.. ....+. .. .+.+|+.|
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~-~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN-MREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC-ccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEEEEE
Confidence 1110111111111 11 244556666665421 246888887742 1110001111 001111 11 36788887
Q ss_pred ccCCCCCccEEEEEeCCCCcEEEc
Q psy11771 291 GNDGSSSLNSVEKYDPKLNKWQLL 314 (347)
Q Consensus 291 G~~~~~~~~~v~~yd~~~~~W~~~ 314 (347)
..+ ..+.+|+...+.-..+
T Consensus 282 kGD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 282 KGD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred ECC-----CeEEEEEccCCcEEee
Confidence 432 3688888766644333
No 182
>KOG0639|consensus
Probab=43.60 E-value=3.1e+02 Score=26.45 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=52.7
Q ss_pred CCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCC-CCcceEEE-EECCEEEEEcccCCCccCCeEEEEECCCCeEEE
Q psy11771 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSS-RRSSCGVA-ALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEP 266 (347)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 266 (347)
+++-.++||. .+++-.+|+..-+=.....++. +..+.+++ ..+.++....-.+ ..+-+||+.+.+ .
T Consensus 476 dgrtLivGGe-----astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd-----GnI~vwDLhnq~--~ 543 (705)
T KOG0639|consen 476 DGRTLIVGGE-----ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD-----GNIAVWDLHNQT--L 543 (705)
T ss_pred CCceEEeccc-----cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC-----CcEEEEEcccce--e
Confidence 7788888995 3667788887665444444543 22223333 3455655443322 356788887764 3
Q ss_pred cCCCCCCCcceEEEEE--CCEEEEEeccCC
Q psy11771 267 IAPMLSRRSTHEVVNI--EGYLLTMGGNDG 294 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~--~~~lyv~GG~~~ 294 (347)
+..++----+.++..+ +|.-.-.||.++
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCcc
Confidence 3344433344555555 355555688653
No 183
>PRK01742 tolB translocation protein TolB; Provisional
Probab=42.64 E-value=2.9e+02 Score=25.93 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=34.1
Q ss_pred ceEEEEeCCCCcEEecCCCCCCCcceEEEEECCE-EEEEcccCCCccCCeEEEEECCCCeEEEcCC
Q psy11771 205 ASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGA-IYCVGGNDGTMCMSSGERFNVRRNSWEPIAP 269 (347)
Q Consensus 205 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 269 (347)
..++.+|..+.+-+.+...+.. .......-+++ |++....++. ..+|.+|..+.....+..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGH-NGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCc-cCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeecc
Confidence 5688999988766665544321 11122223554 4443322221 368889988877666643
No 184
>KOG1538|consensus
Probab=41.74 E-value=1e+02 Score=30.61 Aligned_cols=96 Identities=22% Similarity=0.362 Sum_probs=54.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCC--ccceEEEEECCEEEEEcCcCCC--------------Cccc
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTR--RRYCRIAVVENCLYALGGFDST--------------NYQA 205 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~--r~~~~~~~~~~~lyv~GG~~~~--------------~~~~ 205 (347)
+..+.+..| +.+.+||+..++ .+.++-.. ..+..+-..+|+.|..||.+.. ...+
T Consensus 24 GsqL~lAAg-------~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D 94 (1081)
T KOG1538|consen 24 GTQLILAAG-------SRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHND 94 (1081)
T ss_pred CceEEEecC-------CEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCC
Confidence 456666666 678999998775 23333322 2233333458899998886532 1123
Q ss_pred eEE--EEeCCCCc-----------EEecCC-----CCCCCcceEEEEECCEEEEEcccC
Q psy11771 206 SVE--RLDPRMGK-----------WAPVPS-----MSSRRSSCGVAALDGAIYCVGGND 246 (347)
Q Consensus 206 ~~~--~yd~~~~~-----------W~~~~~-----~p~~r~~~~~~~~~~~iyv~GG~~ 246 (347)
.+. .|||.+.. |+.-.. -...|...++-.-+|.++++|-.+
T Consensus 95 ~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~n 153 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFN 153 (1081)
T ss_pred eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccC
Confidence 333 47776543 544321 224454444555578888888543
No 185
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=41.73 E-value=3.1e+02 Score=25.95 Aligned_cols=105 Identities=7% Similarity=-0.094 Sum_probs=59.2
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECC
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG 237 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 237 (347)
.+++.+|..+++-.++......-...+...-+.+|+......+ ...++.+|+...+=+++..-..... +....-+|
T Consensus 262 ~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG 337 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDG 337 (425)
T ss_pred ccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC---CcceEEECCCCCceeEeeccCCCCc-CccCCCCC
Confidence 4688999988874444444433333333333445555533332 2489999998877666543222222 33344455
Q ss_pred EEEEEcccCCCccCCeEEEEECCCCe-EEEcC
Q psy11771 238 AIYCVGGNDGTMCMSSGERFNVRRNS-WEPIA 268 (347)
Q Consensus 238 ~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~ 268 (347)
+.+++-+..... ..+..+|+.++. |+.+.
T Consensus 338 ~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 338 DKIVFESSSGGQ--WDIDKNDLASGGKIRILT 367 (425)
T ss_pred CEEEEEeccCCc--eeeEEeccCCCCcEEEcc
Confidence 544444433222 678889998777 88765
No 186
>KOG0274|consensus
Probab=41.30 E-value=3.6e+02 Score=26.50 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=75.1
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECC-EEEEEcCcCCCCccceEEEEeCCCC
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN-CLYALGGFDSTNYQASVERLDPRMG 215 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~ 215 (347)
..+.+++.+.+.|..++ .+-++|+.+.+.. ..+...-..-....+++ ...+-|+.+ ..+..+|+.+.
T Consensus 335 ~~v~~~~~~lvsgs~d~-----~v~VW~~~~~~cl--~sl~gH~~~V~sl~~~~~~~~~Sgs~D-----~~IkvWdl~~~ 402 (537)
T KOG0274|consen 335 NCVQLDEPLLVSGSYDG-----TVKVWDPRTGKCL--KSLSGHTGRVYSLIVDSENRLLSGSLD-----TTIKVWDLRTK 402 (537)
T ss_pred EEEEecCCEEEEEecCc-----eEEEEEhhhceee--eeecCCcceEEEEEecCcceEEeeeec-----cceEeecCCch
Confidence 44445566666666442 4667777755432 22222111111224444 444445433 55777888766
Q ss_pred cEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCC
Q psy11771 216 KWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGS 295 (347)
Q Consensus 216 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 295 (347)
. ..+..+......-....+.+.+++-+..+ ..+..+|.++++-...-.-+ ......++.......+..+.+
T Consensus 403 ~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD-----~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~~-- 473 (537)
T KOG0274|consen 403 R-KCIHTLQGHTSLVSSLLLRDNFLVSSSAD-----GTIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSDD-- 473 (537)
T ss_pred h-hhhhhhcCCcccccccccccceeEecccc-----ccEEEeecccCceeeeeccC-CcccEEEeecCcceEEEEecC--
Confidence 4 33333333222223334556677766654 36777888877655443322 223333444444556655543
Q ss_pred CCccEEEEEeCCCCc
Q psy11771 296 SSLNSVEKYDPKLNK 310 (347)
Q Consensus 296 ~~~~~v~~yd~~~~~ 310 (347)
..+..||..+.+
T Consensus 474 ---~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 474 ---GSVKLWDLRSGT 485 (537)
T ss_pred ---CeeEEEecccCc
Confidence 246677766554
No 187
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=41.11 E-value=2.9e+02 Score=25.41 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=43.3
Q ss_pred ECCEEEEE--cCcCCC--CccceEEEEeCCCCcEEecCCCCCCCcceEEEEE-C-C-EEEEEcccCCCccCCeEEEEECC
Q psy11771 188 VENCLYAL--GGFDST--NYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL-D-G-AIYCVGGNDGTMCMSSGERFNVR 260 (347)
Q Consensus 188 ~~~~lyv~--GG~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~-~-~iyv~GG~~~~~~~~~v~~yd~~ 260 (347)
-++++||. |+..+. ...+.++.+|..+. +.+..++.++..+.++.- + . .+|+.-+.+ +++.++|..
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-----~~VsViD~~ 330 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--KRLRKIELGHEIDSINVSQDAKPLLYALSTGD-----KTLYIFDAE 330 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCC--eEEEEEeCCCceeeEEECCCCCeEEEEeCCCC-----CcEEEEECc
Confidence 36799994 222111 34578999998654 555555555555555554 3 4 677776542 678999988
Q ss_pred CCe
Q psy11771 261 RNS 263 (347)
Q Consensus 261 ~~~ 263 (347)
+.+
T Consensus 331 t~k 333 (352)
T TIGR02658 331 TGK 333 (352)
T ss_pred CCe
Confidence 874
No 188
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=39.66 E-value=2.2e+02 Score=26.48 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=42.2
Q ss_pred ceEEEEeCCCCcEEecC-CCCCCCcceEEEEECC-EEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE
Q psy11771 205 ASVERLDPRMGKWAPVP-SMSSRRSSCGVAALDG-AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI 282 (347)
Q Consensus 205 ~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 282 (347)
..+|..|........+. .++.....|---.-+| .|+..+.. ..+...-+..||+++..=+.+..+| .+.|-....
T Consensus 216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~-~~~~~~~i~~~d~~t~~~~~~~~~p--~~~H~~ss~ 292 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT-PGGQDFWIAGYDPDTGERRRLMEMP--WCSHFMSSP 292 (386)
T ss_dssp -SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE-TTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-T
T ss_pred eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec-CCCCceEEEeeCCCCCCceEEEeCC--ceeeeEEcC
Confidence 47899998765555543 3333333444445555 34333332 2232345778999987544444444 577877888
Q ss_pred CCEEEEEeccC
Q psy11771 283 EGYLLTMGGND 293 (347)
Q Consensus 283 ~~~lyv~GG~~ 293 (347)
+++|++=-|.+
T Consensus 293 Dg~L~vGDG~d 303 (386)
T PF14583_consen 293 DGKLFVGDGGD 303 (386)
T ss_dssp TSSEEEEEE--
T ss_pred CCCEEEecCCC
Confidence 99988865653
No 189
>KOG0278|consensus
Probab=39.40 E-value=2.6e+02 Score=24.37 Aligned_cols=128 Identities=19% Similarity=0.140 Sum_probs=66.2
Q ss_pred cceEEEEeCCCCcEEecCCCCCCCcceEEE-EECCEEEEEc-ccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEE
Q psy11771 204 QASVERLDPRMGKWAPVPSMSSRRSSCGVA-ALDGAIYCVG-GNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVN 281 (347)
Q Consensus 204 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 281 (347)
..++-.+|..+++=..-=.++.+. .++- ..+|+|..+. | .+|-.+|+.+-.--+--.||.....+++-.
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~V--tSlEvs~dG~ilTia~g-------ssV~Fwdaksf~~lKs~k~P~nV~SASL~P 234 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPV--TSLEVSQDGRILTIAYG-------SSVKFWDAKSFGLLKSYKMPCNVESASLHP 234 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCC--cceeeccCCCEEEEecC-------ceeEEeccccccceeeccCccccccccccC
Confidence 356777888776533222223332 2232 3355555542 3 456667776543333334555443322211
Q ss_pred ECCEEEEEeccCCCCCccEEEEEeCCCCcEEEc------cCCCCCcc--eeEEEEEcCCCcceEEEEcCCCCC
Q psy11771 282 IEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLL------TPMLTRRS--SIGAAVLETLNIEKRLLVAPPAPT 346 (347)
Q Consensus 282 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~------~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~ 346 (347)
+..+||.||.+. .++.||..++.=... ++...-|+ ..-+++.+...=..|+|...|.-+
T Consensus 235 -~k~~fVaGged~-----~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 235 -KKEFFVAGGEDF-----KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -CCceEEecCcce-----EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 457899999643 477888777642221 11112222 223455666777788888766543
No 190
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=38.09 E-value=2e+02 Score=22.77 Aligned_cols=128 Identities=10% Similarity=0.035 Sum_probs=65.2
Q ss_pred EEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCc----ceEEEEE-CCEEEEEcccCCCccCCeEEEEE--
Q psy11771 186 AVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRS----SCGVAAL-DGAIYCVGGNDGTMCMSSGERFN-- 258 (347)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd-- 258 (347)
+.++|.+|=++..........+.+||..+.+.+..-++|.... ...+.++ +++|.++--. .....-++|+.+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~-~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC-DETSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec-cCCccEEEEEEeee
Confidence 3567777766654433322368999999999943333343222 3344333 6778777321 112225677765
Q ss_pred -CCCCeEEEcCC-----CCCCCc---ceEEEEE-CCEEEEEeccCCCC-CccEEEEEeCCCCcEEEcc
Q psy11771 259 -VRRNSWEPIAP-----MLSRRS---THEVVNI-EGYLLTMGGNDGSS-SLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 259 -~~~~~W~~~~~-----~~~~~~---~~~~~~~-~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~ 315 (347)
....+|+++-. .+.... ......- ++++.+.-...... ..+.+++|+ +++.-+++.
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~ 147 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVD 147 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcc
Confidence 23678998632 111111 1122222 34555543322211 125677887 555555554
No 191
>KOG0268|consensus
Probab=36.73 E-value=2.4e+02 Score=25.96 Aligned_cols=136 Identities=18% Similarity=0.123 Sum_probs=63.0
Q ss_pred CeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEE--
Q psy11771 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL-- 235 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 235 (347)
.++..||..+.+-.+--.+ .-|.+.-+-.-+...|+.|..+ ..+|.||...-+ .|+..-+ .|..++.
T Consensus 210 rsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED-----~nlY~~DmR~l~----~p~~v~~-dhvsAV~dV 278 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANED-----HNLYTYDMRNLS----RPLNVHK-DHVSAVMDV 278 (433)
T ss_pred CceEEEecccCCccceeee-eccccceecCccccceeecccc-----ccceehhhhhhc----ccchhhc-ccceeEEEe
Confidence 4577888777652111111 1122222222244556655432 446777765321 1222222 3333332
Q ss_pred ----CCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccEEEEEeCCCC
Q psy11771 236 ----DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI--EGYLLTMGGNDGSSSLNSVEKYDPKLN 309 (347)
Q Consensus 236 ----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 309 (347)
-|+=++.|+++ .++-.|......=..+ -...|-.|..++. -+.=||+.|.++. ++-.+ +.+
T Consensus 279 dfsptG~EfvsgsyD-----ksIRIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~----nvRlW--ka~ 345 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYD-----KSIRIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDG----NVRLW--KAK 345 (433)
T ss_pred ccCCCcchhcccccc-----ceEEEeecCCCcchhh--hhHhhhheeeEEEEeccccEEEecCCCc----ceeee--ecc
Confidence 25667777775 4566665544321111 1123344444433 4555888887654 23333 345
Q ss_pred cEEEccCC
Q psy11771 310 KWQLLTPM 317 (347)
Q Consensus 310 ~W~~~~~~ 317 (347)
.|++++.+
T Consensus 346 Aseklgv~ 353 (433)
T KOG0268|consen 346 ASEKLGVI 353 (433)
T ss_pred hhhhcCCC
Confidence 56666543
No 192
>PRK10115 protease 2; Provisional
Probab=36.45 E-value=4.8e+02 Score=26.55 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=58.0
Q ss_pred cceEEEEeC--CCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECC-CCeEEEcCCCCCCCcceEEE
Q psy11771 204 QASVERLDP--RMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVR-RNSWEPIAPMLSRRSTHEVV 280 (347)
Q Consensus 204 ~~~~~~yd~--~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~ 280 (347)
.+.++.|+. .+..|..+-+.+... .......++.+|+.--.+ .....+...+.. ..+|+.+-+......--.+.
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~ 322 (686)
T PRK10115 246 TSEVLLLDAELADAEPFVFLPRRKDH-EYSLDHYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFT 322 (686)
T ss_pred cccEEEEECcCCCCCceEEEECCCCC-EEEEEeCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEECCCCCCEEEEEE
Confidence 466787773 234443333323222 233345568888874332 223457777776 57898876553332323444
Q ss_pred EECCEEEEEeccCCCCCccEEEEEeCCCCcEEEcc
Q psy11771 281 NIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 281 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 315 (347)
..++.|++..-.++ ...++++|..++....+.
T Consensus 323 ~~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 323 LFTDWLVVEERQRG---LTSLRQINRKTREVIGIA 354 (686)
T ss_pred EECCEEEEEEEeCC---EEEEEEEcCCCCceEEec
Confidence 45777777654332 345778887665555443
No 193
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=36.29 E-value=1.3e+02 Score=27.35 Aligned_cols=117 Identities=14% Similarity=-0.014 Sum_probs=61.5
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEE-CCEEEEEcCcCCC----CccceEEEEeCCCCcE
Q psy11771 143 GLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV-ENCLYALGGFDST----NYQASVERLDPRMGKW 217 (347)
Q Consensus 143 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~----~~~~~~~~yd~~~~~W 217 (347)
.++||.--.-.. ....++++|..+++. ++.++.......+... +..+|+..-+-.. ...+-++.||+.+-+-
T Consensus 3 ~rvyV~D~~~~~-~~~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 3 HRVYVQDPVFFH-MTSRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp TEEEEEE-GGGG-SSEEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred cEEEEECCcccc-ccceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 357776442111 135789999888764 3334444333333333 4477776543211 3467789999998754
Q ss_pred EecCCCCCC-Ccc------eEEEEECC-EEEEEcccCCCccCCeEEEEECCCCeEEE
Q psy11771 218 APVPSMSSR-RSS------CGVAALDG-AIYCVGGNDGTMCMSSGERFNVRRNSWEP 266 (347)
Q Consensus 218 ~~~~~~p~~-r~~------~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 266 (347)
..--.+|.. |.. ....+-++ .+||. +-.+..+|-+-|.+.++.-.
T Consensus 80 ~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~----N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 80 TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ----NFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEETTS-B--BS--GGGEEE-TTSSEEEEE----EESSSEEEEEEETTTTEEEE
T ss_pred cceEecCCcchheecccccceEEccCCcEEEEE----ccCCCCeEEEEECCCCceee
Confidence 322223322 331 12222344 45554 22445788899999887643
No 194
>KOG3669|consensus
Probab=35.25 E-value=4.5e+02 Score=25.90 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=31.6
Q ss_pred EEEEeCCCCcEEeCCCCC-------CCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCC
Q psy11771 160 MERYDPLTGVWSSCPAMT-------TRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPS 222 (347)
Q Consensus 160 ~~~~d~~~~~W~~~~~~~-------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 222 (347)
+..-.|....|+.+++.+ .+....=+++.++.+|.=-| +-+.|+..+.|..+..
T Consensus 210 vs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~G---------VsRqNp~GdsWkdI~t 270 (705)
T KOG3669|consen 210 VSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREG---------VSRQNPEGDSWKDIVT 270 (705)
T ss_pred ccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEec---------ccccCCCCchhhhccC
Confidence 344567777888776544 11111123344677666544 4567888899986654
No 195
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=34.97 E-value=3.4e+02 Score=24.40 Aligned_cols=127 Identities=15% Similarity=0.067 Sum_probs=0.0
Q ss_pred ccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCC--------CcEEecC
Q psy11771 150 GYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRM--------GKWAPVP 221 (347)
Q Consensus 150 G~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~--------~~W~~~~ 221 (347)
+.........++++||....-+.+..-..--.+.+...-+..+|+. +...+.+++|+... ..+....
T Consensus 135 ~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~a-----DT~~~~i~r~~~d~~~g~~~~~~~~~~~~ 209 (307)
T COG3386 135 GKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA-----DTPANRIHRYDLDPATGPIGGRRGFVDFD 209 (307)
T ss_pred CccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEE-----eCCCCeEEEEecCcccCccCCcceEEEcc
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE-C---CEEEEE
Q psy11771 222 SMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI-E---GYLLTM 289 (347)
Q Consensus 222 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~---~~lyv~ 289 (347)
. ..++-.-.++--+|.||+.....+ ..+.+|+|. ++.+.....|....+++.+ + ++|||.
T Consensus 210 ~-~~G~PDG~~vDadG~lw~~a~~~g----~~v~~~~pd---G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 210 E-EPGLPDGMAVDADGNLWVAAVWGG----GRVVRFNPD---GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred C-CCCCCCceEEeCCCCEEEecccCC----ceEEEECCC---CcEEEEEECCCCCCccceEeCCCcCEEEEE
No 196
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=34.82 E-value=2.6e+02 Score=23.10 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=40.3
Q ss_pred CCeEEEEECCCCeEEEcC--CCCCCCcce-EEEEE-CCE-EEEEeccCC-CCCccEEEEEeCCCCcEEEccCCCCC
Q psy11771 251 MSSGERFNVRRNSWEPIA--PMLSRRSTH-EVVNI-EGY-LLTMGGNDG-SSSLNSVEKYDPKLNKWQLLTPMLTR 320 (347)
Q Consensus 251 ~~~v~~yd~~~~~W~~~~--~~~~~~~~~-~~~~~-~~~-lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~ 320 (347)
...+|.+|..++.|..+. +.+. ...+ -+.-+ +.. ++++|...+ ...-..+++|++.+++=+.+.+....
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~-k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dk 161 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEE-KYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDK 161 (200)
T ss_pred ceeEEEEecCCCceEEEEecCccc-ccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecccc
Confidence 567888998888876552 2221 1111 23333 333 555563221 22235799999999988888776443
No 197
>KOG1523|consensus
Probab=34.81 E-value=2.6e+02 Score=25.27 Aligned_cols=99 Identities=16% Similarity=0.274 Sum_probs=52.4
Q ss_pred cceEEEEeCCCCc-EEecCCCCCCCcceEEEEE---CCEEEEEcccCCCccCCeEEEEEC-CCCeEEEcCCCCCCCcceE
Q psy11771 204 QASVERLDPRMGK-WAPVPSMSSRRSSCGVAAL---DGAIYCVGGNDGTMCMSSGERFNV-RRNSWEPIAPMLSRRSTHE 278 (347)
Q Consensus 204 ~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~-~~~~W~~~~~~~~~~~~~~ 278 (347)
..+++.|....++ |+....+..--..-..+-. .++| +.++.+ ...|++.. ...+|.+..-+-.-...+.
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~d-----rnayVw~~~~~~~WkptlvLlRiNrAAt 104 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHD-----RNAYVWTQPSGGTWKPTLVLLRINRAAT 104 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCC-----CCccccccCCCCeeccceeEEEecccee
Confidence 4678999988887 9988766543222222222 2344 334433 23455555 6788987654433223334
Q ss_pred EEEE--CCEEEEEeccCCCCCccEEEEEeCCCCcE
Q psy11771 279 VVNI--EGYLLTMGGNDGSSSLNSVEKYDPKLNKW 311 (347)
Q Consensus 279 ~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 311 (347)
.+.. ++..|.+|+.. ..-.|..|.-+.+-|
T Consensus 105 ~V~WsP~enkFAVgSga---r~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 105 CVKWSPKENKFAVGSGA---RLISVCYYEQENDWW 136 (361)
T ss_pred eEeecCcCceEEeccCc---cEEEEEEEeccccee
Confidence 4443 45556666532 133455555444444
No 198
>KOG0649|consensus
Probab=34.20 E-value=3.1e+02 Score=23.80 Aligned_cols=110 Identities=16% Similarity=0.263 Sum_probs=58.9
Q ss_pred cEEeCCCCCC-----Cc-cceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEE--CCEEE
Q psy11771 169 VWSSCPAMTT-----RR-RYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL--DGAIY 240 (347)
Q Consensus 169 ~W~~~~~~~~-----~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 240 (347)
.|+...|+.. |- ..+.+..-.|.|+..|| ...+++.|.++++.++.-. ...-+-|+++.- ++.|+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG------D~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG------DGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecC------CeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCccee
Confidence 3666555543 22 22333334788999998 3568999999998765421 122234555542 34433
Q ss_pred EEcccCCCccCCeEEEEECCCCeEEEc-CC-----CCCC--CcceEEEEECCEEEEEec
Q psy11771 241 CVGGNDGTMCMSSGERFNVRRNSWEPI-AP-----MLSR--RSTHEVVNIEGYLLTMGG 291 (347)
Q Consensus 241 v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~-----~~~~--~~~~~~~~~~~~lyv~GG 291 (347)
.|+.+ .++-.+|.++.+-.++ .+ ...| ...-+++..+..-.++||
T Consensus 173 -sG~ED-----GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg 225 (325)
T KOG0649|consen 173 -SGAED-----GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG 225 (325)
T ss_pred -ecCCC-----ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC
Confidence 35443 3566777777655443 21 1121 122355556666666665
No 199
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=34.02 E-value=1.3e+02 Score=21.10 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHhc-cccccccccCCCChHHHHHhcccccccccC
Q psy11771 48 SSCGNYILPTAWVSVA-LQLLRHVKLPLLARDFLMNSVESESLIKES 93 (347)
Q Consensus 48 ~E~~v~~~~~~Wv~~~-~~ll~~vr~~~l~~~~l~~~l~~~~l~~~~ 93 (347)
+...+.+++.+++..+ .++.+.-.|..++.+.+...++++.+...+
T Consensus 12 ~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~ 58 (101)
T smart00875 12 GLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPS 58 (101)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCC
Confidence 4457888999999988 777777899999999999999999886433
No 200
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=32.94 E-value=2.7e+02 Score=25.94 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=42.4
Q ss_pred CeEEEEeCCCCcEEeCC-CCCCCccceEEEEECC-EEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEE
Q psy11771 158 SSMERYDPLTGVWSSCP-AMTTRRRYCRIAVVEN-CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL 235 (347)
Q Consensus 158 ~~~~~~d~~~~~W~~~~-~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 235 (347)
..+|..|......+++- .++.....|---..+| .|+..+... .+...-+..||+.+..=+.+..+| .+.|-....
T Consensus 216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~-~~~~~~i~~~d~~t~~~~~~~~~p--~~~H~~ss~ 292 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP-GGQDFWIAGYDPDTGERRRLMEMP--WCSHFMSSP 292 (386)
T ss_dssp -SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEET-TT--EEEEEE-TTT--EEEEEEE---SEEEEEE-T
T ss_pred eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecC-CCCceEEEeeCCCCCCceEEEeCC--ceeeeEEcC
Confidence 36899998766655553 2333334444444454 444433322 233456788999986534444444 577888889
Q ss_pred CCEEEEEcccC
Q psy11771 236 DGAIYCVGGND 246 (347)
Q Consensus 236 ~~~iyv~GG~~ 246 (347)
++++++--|.+
T Consensus 293 Dg~L~vGDG~d 303 (386)
T PF14583_consen 293 DGKLFVGDGGD 303 (386)
T ss_dssp TSSEEEEEE--
T ss_pred CCCEEEecCCC
Confidence 99988765653
No 201
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=32.64 E-value=3e+02 Score=24.47 Aligned_cols=115 Identities=12% Similarity=0.155 Sum_probs=65.4
Q ss_pred EEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceE-EEEECCEEEEEcCcCCCCccceEEEEeCC
Q psy11771 135 AIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCR-IAVVENCLYALGGFDSTNYQASVERLDPR 213 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~yd~~ 213 (347)
.++...-+++.+++|+.. .+..-|-..++|.+.-.... |..+. +..++.+=++.|- .+.++.=+-.
T Consensus 47 ~ia~~~~g~~gwlVg~rg------tiletdd~g~tw~qal~~~g-r~~f~sv~f~~~egw~vGe------~sqll~T~Dg 113 (339)
T COG4447 47 DIAFTESGSHGWLVGGRG------TILETDDGGITWAQALDFLG-RHAFHSVSFLGMEGWIVGE------PSQLLHTTDG 113 (339)
T ss_pred ceeEeecCcceEEEcCcc------eEEEecCCcccchhhhchhh-hhheeeeeeecccccccCC------cceEEEecCC
Confidence 446777788999999953 35555667788987643333 44444 4444555555542 2344544555
Q ss_pred CCcEEecCC-CCCCCcceEEEEECCE-EEEEcccCCCccCCeEEEEECCCCeEEEcC
Q psy11771 214 MGKWAPVPS-MSSRRSSCGVAALDGA-IYCVGGNDGTMCMSSGERFNVRRNSWEPIA 268 (347)
Q Consensus 214 ~~~W~~~~~-~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 268 (347)
-.+|.+++- ...+-...++..++++ =|++|-. -.++.-+-..+.|+.+.
T Consensus 114 GqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~------Gail~T~DgGk~Wk~l~ 164 (339)
T COG4447 114 GQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQ------GAILKTTDGGKNWKALV 164 (339)
T ss_pred CcchhhchhhcCCCCCcceeEEecchhhhhhccc------ceEEEecCCcccHhHhc
Confidence 678998873 2222223455556544 3555432 24555555566788764
No 202
>KOG3545|consensus
Probab=32.63 E-value=3.3e+02 Score=23.59 Aligned_cols=145 Identities=19% Similarity=0.274 Sum_probs=78.2
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc---EEeCCCCCC---------CccceEEEEECCEEEEEcCcCCCCcc
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGV---WSSCPAMTT---------RRRYCRIAVVENCLYALGGFDSTNYQ 204 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~~~---------~r~~~~~~~~~~~lyv~GG~~~~~~~ 204 (347)
+-++.++.+|.-.+ ....+.+||..+.. +..++.... +....-.++-.+-||++=-..++...
T Consensus 72 g~VVynGs~yynk~-----~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~ 146 (249)
T KOG3545|consen 72 GHVVYNGSLYYNKA-----GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGT 146 (249)
T ss_pred ceEEEcceEEeecc-----CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCc
Confidence 66777777776643 23558889888743 555543221 12334456666778877544333222
Q ss_pred ceEEEEeCCC----CcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcC-CCCCCCcceEE
Q psy11771 205 ASVERLDPRM----GKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIA-PMLSRRSTHEV 279 (347)
Q Consensus 205 ~~~~~yd~~~----~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~ 279 (347)
..+-..|+.+ .+|.. ..+... ...+..+=|.+|++-..+.... .--+.||..+++-+.+. +++.+-...++
T Consensus 147 iv~skLdp~tl~~e~tW~T--~~~k~~-~~~aF~iCGvLY~v~S~~~~~~-~i~yaydt~~~~~~~~~ipf~N~y~~~~~ 222 (249)
T KOG3545|consen 147 IVLSKLDPETLEVERTWNT--TLPKRS-AGNAFMICGVLYVVHSYNCTHT-QISYAYDTTTGTQERIDLPFPNPYSYATM 222 (249)
T ss_pred EEeeccCHHHhheeeeecc--ccCCCC-cCceEEEeeeeEEEeccccCCc-eEEEEEEcCCCceecccccccchhhhhhc
Confidence 3346677744 34633 222222 2334455577888876654431 12378999988764443 22223233333
Q ss_pred EEE---CCEEEEEe
Q psy11771 280 VNI---EGYLLTMG 290 (347)
Q Consensus 280 ~~~---~~~lyv~G 290 (347)
.-. +.+||+.-
T Consensus 223 idYNP~D~~LY~wd 236 (249)
T KOG3545|consen 223 IDYNPRDRRLYAWD 236 (249)
T ss_pred cCCCcccceeeEec
Confidence 333 56788864
No 203
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=32.34 E-value=2.8e+02 Score=22.74 Aligned_cols=73 Identities=18% Similarity=0.120 Sum_probs=39.6
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecC
Q psy11771 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVP 221 (347)
Q Consensus 142 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 221 (347)
++++.++-|... ..+..||.....-..+ +......-.-.-+|+..++||.... ...+..||.. +++.+.
T Consensus 71 g~~favi~g~~~----~~v~lyd~~~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~--~~~~i~ 139 (194)
T PF08662_consen 71 GNEFAVIYGSMP----AKVTLYDVKGKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNL--NGDLEFWDVR--KKKKIS 139 (194)
T ss_pred CCEEEEEEccCC----cccEEEcCcccEeEee---cCCCceEEEECCCCCEEEEEEccCC--CcEEEEEECC--CCEEee
Confidence 456666655221 3688899864433333 3222222222346777788876532 2568889987 444444
Q ss_pred CCCC
Q psy11771 222 SMSS 225 (347)
Q Consensus 222 ~~p~ 225 (347)
....
T Consensus 140 ~~~~ 143 (194)
T PF08662_consen 140 TFEH 143 (194)
T ss_pred cccc
Confidence 4333
No 204
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=32.08 E-value=1.5e+02 Score=27.05 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=37.5
Q ss_pred CCEEEEEc--CcCCC--CccceEEEEeCCCCcEEecCCCCCCCcceEEEEE-CC--EEEEEcccCCCccCCeEEEEECCC
Q psy11771 189 ENCLYALG--GFDST--NYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL-DG--AIYCVGGNDGTMCMSSGERFNVRR 261 (347)
Q Consensus 189 ~~~lyv~G--G~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~--~iyv~GG~~~~~~~~~v~~yd~~~ 261 (347)
.+++||.- |..+. .....+|.||+.+.+=-..-+++.+ .-++.+- ++ .||.+-+.+ ..+++||..+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~-----~~l~v~D~~t 321 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP--IDSIAVSQDDKPLLYALSAGD-----GTLDVYDAAT 321 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--ESEEEEESSSS-EEEEEETTT-----TEEEEEETTT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc--cceEEEccCCCcEEEEEcCCC-----CeEEEEeCcC
Confidence 67899872 21222 3467899999999863222222222 1233333 33 577653321 5899999998
Q ss_pred CeE
Q psy11771 262 NSW 264 (347)
Q Consensus 262 ~~W 264 (347)
.+-
T Consensus 322 Gk~ 324 (342)
T PF06433_consen 322 GKL 324 (342)
T ss_dssp --E
T ss_pred CcE
Confidence 753
No 205
>KOG0282|consensus
Probab=30.45 E-value=2.6e+02 Score=26.66 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=34.3
Q ss_pred CCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccEEEEEeCCCCc
Q psy11771 236 DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNI---EGYLLTMGGNDGSSSLNSVEKYDPKLNK 310 (347)
Q Consensus 236 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 310 (347)
.+.-++.+|++ ..+-.+|.++++-..--.+- .-..++.+ +..+|+.||.++ .|..||..+++
T Consensus 269 ~g~~fLS~sfD-----~~lKlwDtETG~~~~~f~~~---~~~~cvkf~pd~~n~fl~G~sd~-----ki~~wDiRs~k 333 (503)
T KOG0282|consen 269 CGTSFLSASFD-----RFLKLWDTETGQVLSRFHLD---KVPTCVKFHPDNQNIFLVGGSDK-----KIRQWDIRSGK 333 (503)
T ss_pred cCCeeeeeecc-----eeeeeeccccceEEEEEecC---CCceeeecCCCCCcEEEEecCCC-----cEEEEeccchH
Confidence 44556666664 34556788887654322111 11223333 348999999754 46666665543
No 206
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=29.72 E-value=5.1e+02 Score=24.89 Aligned_cols=153 Identities=9% Similarity=0.064 Sum_probs=77.4
Q ss_pred CCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEEC
Q psy11771 157 LSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD 236 (347)
Q Consensus 157 ~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 236 (347)
..+++.++....+-+.+.-+..+....+--.-++.|.|.--.... ...-.+.|....+-- ...+++-+. .+..++.
T Consensus 106 taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tP-F~q~~~lYkv~~dg~-~~e~LnlGp--athiv~~ 181 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTP-FSQWTELYKVNVDGI-KTEPLNLGP--ATHIVIK 181 (668)
T ss_pred cccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCC-cccceeeeEEccCCc-eeeeccCCc--eeeEEEe
Confidence 356888888888777665553222333333346777776432211 111222333322211 111233222 2233343
Q ss_pred CEEEEEcccC---------CCccCCeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccCCCC-----------
Q psy11771 237 GAIYCVGGND---------GTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSS----------- 296 (347)
Q Consensus 237 ~~iyv~GG~~---------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~----------- 296 (347)
+-+.++|-.. ..+....+|.=.....+.+++-.|+...+.. +.+++++|.+....+.+
T Consensus 182 dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~P--mIV~~RvYFlsD~eG~GnlYSvdldGkD 259 (668)
T COG4946 182 DGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSP--MIVGERVYFLSDHEGVGNLYSVDLDGKD 259 (668)
T ss_pred CCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCc--eEEcceEEEEecccCccceEEeccCCch
Confidence 3355555321 1123345666555555677776666554432 44567777765322111
Q ss_pred -------------------------CccEEEEEeCCCCcEEEcc
Q psy11771 297 -------------------------SLNSVEKYDPKLNKWQLLT 315 (347)
Q Consensus 297 -------------------------~~~~v~~yd~~~~~W~~~~ 315 (347)
.-.+||.|||+++.-+++.
T Consensus 260 lrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekld 303 (668)
T COG4946 260 LRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLD 303 (668)
T ss_pred hhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeee
Confidence 0137999999999998875
No 207
>KOG0281|consensus
Probab=28.44 E-value=4.7e+02 Score=24.00 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=26.9
Q ss_pred CeEEEEECCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccC
Q psy11771 252 SSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGND 293 (347)
Q Consensus 252 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 293 (347)
.++-+++..+.+. +..+.--+.+-+++.++|++.+-|..+
T Consensus 340 RTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSSD 379 (499)
T KOG0281|consen 340 RTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSD 379 (499)
T ss_pred ceEEEEeccceee--ehhhhcccccceehhccCeEEEecCCC
Confidence 4666777766543 444555566677788899988877644
No 208
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=28.32 E-value=46 Score=31.10 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=34.4
Q ss_pred CCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCC
Q psy11771 154 ASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRM 214 (347)
Q Consensus 154 ~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~ 214 (347)
+++.++++++|-..+---++..+...-.-+++-..++.+|++-=.. .+-.+..|..+
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrq----tDPlfviDlsN 458 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQ----TDPLFVIDLSN 458 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEec----cCceEEEEcCC
Confidence 4567888888887776656655543333345556678888764221 34455666543
No 209
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=27.95 E-value=4.1e+02 Score=23.49 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=36.5
Q ss_pred EEECCEEEEEcccCCC-c-cCCeEEEEECC-CCeEEEcCCCC-CCCcceEEEEECCEEEEEec
Q psy11771 233 AALDGAIYCVGGNDGT-M-CMSSGERFNVR-RNSWEPIAPML-SRRSTHEVVNIEGYLLTMGG 291 (347)
Q Consensus 233 ~~~~~~iyv~GG~~~~-~-~~~~v~~yd~~-~~~W~~~~~~~-~~~~~~~~~~~~~~lyv~GG 291 (347)
..++|+.+++|-.... . ..+.|.-|.-. .++|+.++..+ ......=.+.++++| |+||
T Consensus 33 F~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~gel-ifGG 94 (298)
T PF08950_consen 33 FEYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGEL-IFGG 94 (298)
T ss_dssp EEETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEE-EEEE
T ss_pred eeECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEE-EEee
Confidence 4568998988875433 2 34567777665 89999998744 455566677788885 5687
No 210
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=27.74 E-value=3.2e+02 Score=25.23 Aligned_cols=93 Identities=11% Similarity=0.152 Sum_probs=0.0
Q ss_pred cceEEEEeCCCCcEEecCCCCCCCcceEEEEE---CCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcceEEE
Q psy11771 204 QASVERLDPRMGKWAPVPSMSSRRSSCGVAAL---DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVV 280 (347)
Q Consensus 204 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 280 (347)
..++...|..+.+ .+..++.....|....+ +..+|+.+.. ..+-++|+.+.+ .+...+.+....+.+
T Consensus 15 ~~~v~viD~~t~~--~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd------g~vsviD~~~~~--~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 15 SGSVAVIDGATNK--VVARIPTGGAPHAGLKFSPDGRYLYVANRD------GTVSVIDLATGK--VVATIKVGGNPRGIA 84 (369)
T ss_dssp GTEEEEEETTT-S--EEEEEE-STTEEEEEE-TT-SSEEEEEETT------SEEEEEETTSSS--EEEEEE-SSEEEEEE
T ss_pred CCEEEEEECCCCe--EEEEEcCCCCceeEEEecCCCCEEEEEcCC------CeEEEEECCccc--EEEEEecCCCcceEE
Q ss_pred EE-CCEEEEEeccCCCCCccEEEEEeCCCCc
Q psy11771 281 NI-EGYLLTMGGNDGSSSLNSVEKYDPKLNK 310 (347)
Q Consensus 281 ~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 310 (347)
.. +|+..+.+.+... .+.++|.++.+
T Consensus 85 ~s~DG~~~~v~n~~~~----~v~v~D~~tle 111 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPG----TVSVIDAETLE 111 (369)
T ss_dssp E--TTTEEEEEEEETT----EEEEEETTT--
T ss_pred EcCCCCEEEEEecCCC----ceeEecccccc
No 211
>KOG0263|consensus
Probab=27.39 E-value=6.6e+02 Score=25.44 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=50.4
Q ss_pred EEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCc
Q psy11771 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGK 216 (347)
Q Consensus 137 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 216 (347)
|+..+-+.-|++.|.. -..+-.+|..+..-..+=.- ..+.-.+++..-...|+..|.. ...+-.||..+.+
T Consensus 540 cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~e----d~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDE----DGLIKIWDLANGS 610 (707)
T ss_pred eEEECCcccccccCCC----CceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeeccc----CCcEEEEEcCCCc
Confidence 4444445555555521 13355555555443222111 1111222333333444444422 2457788887653
Q ss_pred EEecCCCCCCCc--ceEEEEECCEEEEEcccCCCccCCeEEEEECCC
Q psy11771 217 WAPVPSMSSRRS--SCGVAALDGAIYCVGGNDGTMCMSSGERFNVRR 261 (347)
Q Consensus 217 W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 261 (347)
.+..+-.... ..-....+|.+.++||.+ ++|-.||...
T Consensus 611 --~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D-----nsV~lWD~~~ 650 (707)
T KOG0263|consen 611 --LVKQLKGHTGTIYSLSFSRDGNVLASGGAD-----NSVRLWDLTK 650 (707)
T ss_pred --chhhhhcccCceeEEEEecCCCEEEecCCC-----CeEEEEEchh
Confidence 2222211111 111224588999999876 5666666644
No 212
>KOG0308|consensus
Probab=27.19 E-value=4.9e+02 Score=26.00 Aligned_cols=95 Identities=12% Similarity=0.253 Sum_probs=51.8
Q ss_pred ceEEEEeCCCCc-EEecCCCCCCCcceEEEE---ECCEEEEEcccCCCccCCeEEEEECCCCeEEE------c--CCCC-
Q psy11771 205 ASVERLDPRMGK-WAPVPSMSSRRSSCGVAA---LDGAIYCVGGNDGTMCMSSGERFNVRRNSWEP------I--APML- 271 (347)
Q Consensus 205 ~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~------~--~~~~- 271 (347)
.++-.+++..+- | .+..+..-+.+-.+.+ -++.+++.||.+ ..+..||..+..=+. + .+++
T Consensus 95 tTVK~W~~~~~~~~-c~stir~H~DYVkcla~~ak~~~lvaSgGLD-----~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTF-CMSTIRTHKDYVKCLAYIAKNNELVASGGLD-----RKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred ceEEEeecccCcch-hHhhhhcccchheeeeecccCceeEEecCCC-----ccEEEEEccCcchhhhhhccccccccCCC
Confidence 456667776553 3 2223333333333333 367888889986 467777776542211 1 2233
Q ss_pred CCCc-ceEEEEE-CCEEEEEeccCCCCCccEEEEEeCCCCc
Q psy11771 272 SRRS-THEVVNI-EGYLLTMGGNDGSSSLNSVEKYDPKLNK 310 (347)
Q Consensus 272 ~~~~-~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 310 (347)
-++. .++.+.- .+.+++-||.. +++..|||.+++
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgte-----k~lr~wDprt~~ 204 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTE-----KDLRLWDPRTCK 204 (735)
T ss_pred CCccceeeeecCCcceEEEecCcc-----cceEEecccccc
Confidence 2222 2333333 35688888864 468899988763
No 213
>KOG0649|consensus
Probab=26.59 E-value=4.3e+02 Score=22.99 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=42.1
Q ss_pred EEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEE--CCEEEEEcCcCCCCccceEEEEeC
Q psy11771 135 AIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV--ENCLYALGGFDSTNYQASVERLDP 212 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~ 212 (347)
++.+.--.|.|+..||. ..+++.|..+.+.+..-. ....+-|+++.- ++.| +.|+.+ .++-.+|.
T Consensus 119 am~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi-lsG~ED-----GtvRvWd~ 185 (325)
T KOG0649|consen 119 AMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI-LSGAED-----GTVRVWDT 185 (325)
T ss_pred eeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce-eecCCC-----ccEEEEec
Confidence 33444456888888882 457889999998765321 122344555442 2333 345433 35677888
Q ss_pred CCCcEEe
Q psy11771 213 RMGKWAP 219 (347)
Q Consensus 213 ~~~~W~~ 219 (347)
++.+=..
T Consensus 186 kt~k~v~ 192 (325)
T KOG0649|consen 186 KTQKHVS 192 (325)
T ss_pred cccceeE
Confidence 8765433
No 214
>KOG0286|consensus
Probab=25.60 E-value=4.9e+02 Score=23.29 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=54.8
Q ss_pred EEEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEE--EECCEEEEEcCcCCCCccceEEEEe
Q psy11771 134 FAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIA--VVENCLYALGGFDSTNYQASVERLD 211 (347)
Q Consensus 134 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~yd 211 (347)
..++..-.+.+.||-||.+. ....+|.+...-.+ .++..-....++ .-+|.-|+.|..+ .++-.||
T Consensus 190 ~slsl~p~~~ntFvSg~cD~-----~aklWD~R~~~c~q--tF~ghesDINsv~ffP~G~afatGSDD-----~tcRlyD 257 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDK-----SAKLWDVRSGQCVQ--TFEGHESDINSVRFFPSGDAFATGSDD-----ATCRLYD 257 (343)
T ss_pred EEEecCCCCCCeEEeccccc-----ceeeeeccCcceeE--eecccccccceEEEccCCCeeeecCCC-----ceeEEEe
Confidence 33344444678899888763 34556666654332 222222221222 1256666666532 4567799
Q ss_pred CCCCcEEecCCCCCCCcceEEE--EECCEEEEEcccCCCccCCeEEEEECC
Q psy11771 212 PRMGKWAPVPSMSSRRSSCGVA--ALDGAIYCVGGNDGTMCMSSGERFNVR 260 (347)
Q Consensus 212 ~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~ 260 (347)
+..++=-.+-.-+........+ ...|++...|..+ ..+.++|.-
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d-----~~c~vWDtl 303 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD-----FTCNVWDTL 303 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC-----CceeEeecc
Confidence 8887533222212222222223 3467877777543 345555543
No 215
>KOG1446|consensus
Probab=24.76 E-value=5.1e+02 Score=23.21 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=39.8
Q ss_pred CCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcCCCCCCCcc-eEEEEECCEEEEEe
Q psy11771 212 PRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRST-HEVVNIEGYLLTMG 290 (347)
Q Consensus 212 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~~~lyv~G 290 (347)
+...+|+.+.--|.++. .-+..-++.+|++-++.+. -...+. ..+..... ..++..-+--||++
T Consensus 185 ~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~----~~~tfs----------~~~~~~~~~~~a~ftPds~Fvl~ 249 (311)
T KOG1446|consen 185 NDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGT----VKSTFS----------GYPNAGNLPLSATFTPDSKFVLS 249 (311)
T ss_pred CCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCc----EeeeEe----------eccCCCCcceeEEECCCCcEEEE
Confidence 44556766665555543 2223335666776665443 111111 11111111 23333355557888
Q ss_pred ccCCCCCccEEEEEeCCCCc
Q psy11771 291 GNDGSSSLNSVEKYDPKLNK 310 (347)
Q Consensus 291 G~~~~~~~~~v~~yd~~~~~ 310 (347)
|.++. .+.+|+.++..
T Consensus 250 gs~dg----~i~vw~~~tg~ 265 (311)
T KOG1446|consen 250 GSDDG----TIHVWNLETGK 265 (311)
T ss_pred ecCCC----cEEEEEcCCCc
Confidence 86643 68889887664
No 216
>KOG1565|consensus
Probab=23.73 E-value=6.6e+02 Score=24.18 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=52.3
Q ss_pred ECCEEEEEcCcCCCCccceEEEEeCCCCcEE---ecCC----CCCCCcceEEEEE---CCEEEEEcccCCCccCCeEEEE
Q psy11771 188 VENCLYALGGFDSTNYQASVERLDPRMGKWA---PVPS----MSSRRSSCGVAAL---DGAIYCVGGNDGTMCMSSGERF 257 (347)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~----~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~y 257 (347)
..+++|++.| ...|.|.-.+-..- .+.. .+..+ ..++.. ++++|.+-| +..|+|
T Consensus 343 ~~~~~~ffkg-------~~~w~~~~~~~~~gypr~l~~~~~~~~~~~--idaa~~~~~~~kt~ff~g-------~~~wr~ 406 (469)
T KOG1565|consen 343 WDGKIYFFKG-------AQFWSYAGYTLVPGYPKKLYRSVGFPPRGR--IDAARFWPANGKTYFFSG-------RRYWRY 406 (469)
T ss_pred ccCcEEEecC-------CeeEEEecccccCCCCcchhhccccCCCCc--eeeeEeccCCCceEEEec-------ceeeee
Confidence 6889999988 44677766554432 1111 22222 444443 578888877 567788
Q ss_pred ECCCCeEEEcCCC----CCCCcceEEEEECCEEEEEeccCCCCCccEEEEEeCC
Q psy11771 258 NVRRNSWEPIAPM----LSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPK 307 (347)
Q Consensus 258 d~~~~~W~~~~~~----~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 307 (347)
|...+. ....-. ..++..-++..-++.+|.|-| +..|.||..
T Consensus 407 d~~~~~-~d~~~p~~~~~~~gi~~a~~~~~~~~Yff~g-------~~y~~~d~~ 452 (469)
T KOG1565|consen 407 DEKSRA-MDWGYPKWIHKFPGIGDASFSNGGSVYFFSG-------PKYYRYDDR 452 (469)
T ss_pred hhhhcc-cccCCCcchhhccCccchhhhcCceEEEEeC-------CeeEeeCch
Confidence 776655 111100 011112222232347888877 367788765
No 217
>KOG0308|consensus
Probab=23.25 E-value=4.4e+02 Score=26.32 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=40.1
Q ss_pred EEEEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc------EEe--CCCCC-CCc-cceEEEEE-CCEEEEEcCcCCCCc
Q psy11771 135 AIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGV------WSS--CPAMT-TRR-RYCRIAVV-ENCLYALGGFDSTNY 203 (347)
Q Consensus 135 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~------W~~--~~~~~-~~r-~~~~~~~~-~~~lyv~GG~~~~~~ 203 (347)
.++...-++.+.+-||.+ ..++.+|..+.. ... ...++ .++ .-++.+.- .+.++|.||.+
T Consensus 122 cla~~ak~~~lvaSgGLD-----~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte---- 192 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLD-----RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE---- 192 (735)
T ss_pred eeeecccCceeEEecCCC-----ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc----
Confidence 334546688899999976 346666665432 111 12333 333 23344443 34688888865
Q ss_pred cceEEEEeCCCC
Q psy11771 204 QASVERLDPRMG 215 (347)
Q Consensus 204 ~~~~~~yd~~~~ 215 (347)
+.+..|||.+.
T Consensus 193 -k~lr~wDprt~ 203 (735)
T KOG0308|consen 193 -KDLRLWDPRTC 203 (735)
T ss_pred -cceEEeccccc
Confidence 45666777654
No 218
>KOG2314|consensus
Probab=22.76 E-value=7.4e+02 Score=24.38 Aligned_cols=99 Identities=9% Similarity=-0.012 Sum_probs=58.2
Q ss_pred CeEEEEeCCCCcEE-eCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeC--CCCcEEecCCCCCCCcceEEEE
Q psy11771 158 SSMERYDPLTGVWS-SCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDP--RMGKWAPVPSMSSRRSSCGVAA 234 (347)
Q Consensus 158 ~~~~~~d~~~~~W~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~r~~~~~~~ 234 (347)
..+++|....+... ..-++......++--..+++.-++.|... .+++-.|.+ ...+|+.+..++...+.+-.-+
T Consensus 425 ~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~---k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfws 501 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV---KNTVSFYAVETNIKKPSLVKELDKKFANTVFWS 501 (698)
T ss_pred eeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc---ccceeEEEeecCCCchhhhhhhcccccceEEEc
Confidence 44566665554321 11233344556666677888888888554 244444544 4567888777776544444444
Q ss_pred ECCEEEEEcccCCCccCCeEEEEECCC
Q psy11771 235 LDGAIYCVGGNDGTMCMSSGERFNVRR 261 (347)
Q Consensus 235 ~~~~iyv~GG~~~~~~~~~v~~yd~~~ 261 (347)
-.|+..++++... ...+++.||..-
T Consensus 502 PkG~fvvva~l~s--~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 502 PKGRFVVVAALVS--RRGDLEFYDTDY 526 (698)
T ss_pred CCCcEEEEEEecc--cccceEEEecch
Confidence 5677777776543 235777787763
No 219
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=22.27 E-value=3.8e+02 Score=20.84 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=41.4
Q ss_pred CEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEE---CCEEEEEcccCCCccCCeEEEEECCCCe--E
Q psy11771 190 NCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL---DGAIYCVGGNDGTMCMSSGERFNVRRNS--W 264 (347)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W 264 (347)
..+.++|- .+.+..||...|.=.....++.+........+ ...+.++||. .++.-||-+.++ |
T Consensus 64 ~D~LliGt------~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn------csi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 64 RDCLLIGT------QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN------CSIQGFDYEGNEIFW 131 (136)
T ss_pred cCEEEEec------cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce------EEEEEeCCCCcEEEE
Confidence 35566664 47799999998874444556666544444334 3568888985 467778776543 6
Q ss_pred EE
Q psy11771 265 EP 266 (347)
Q Consensus 265 ~~ 266 (347)
..
T Consensus 132 tV 133 (136)
T PF14781_consen 132 TV 133 (136)
T ss_pred Ee
Confidence 43
No 220
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=22.19 E-value=5.5e+02 Score=22.77 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=37.7
Q ss_pred EEEECCEEEEEcccCCC-C-CCCeEEEEeCC-CCcEEeCCCC-CCCccceEEEEECCEEEEEcCc
Q psy11771 138 TCSFDGLLYACGGYDGA-S-CLSSMERYDPL-TGVWSSCPAM-TTRRRYCRIAVVENCLYALGGF 198 (347)
Q Consensus 138 ~~~~~~~lyv~GG~~~~-~-~~~~~~~~d~~-~~~W~~~~~~-~~~r~~~~~~~~~~~lyv~GG~ 198 (347)
-...+++.+|+|-.... . ..+.+..|.-. .++|..++.- .......-.+.+++.+ |+||.
T Consensus 32 PF~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~gel-ifGGv 95 (298)
T PF08950_consen 32 PFEYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGEL-IFGGV 95 (298)
T ss_dssp -EEETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEE-EEEEE
T ss_pred ceeECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEE-EEeeE
Confidence 34568899988887543 3 34567777766 8899998873 3455666677889998 55773
No 221
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=22.03 E-value=7.3e+02 Score=24.04 Aligned_cols=87 Identities=17% Similarity=0.090 Sum_probs=48.1
Q ss_pred CCCCCCeEEEEeCCCCcEEeCCCCCCCccceEEEEECCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEE
Q psy11771 153 GASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGV 232 (347)
Q Consensus 153 ~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 232 (347)
....++.++..|+.+..=-.-+++..-|. ..+...++.+.+++|..+... -.+...|+.+-.-..-+..+..+. ..+
T Consensus 370 ~~~~ls~LvllD~~tg~~l~~S~~~~Ir~-r~~~~~~~~~vaI~g~~G~~~-ikLvlid~~tLev~kes~~~i~~~-S~l 446 (489)
T PF05262_consen 370 PNHYLSELVLLDSDTGDTLKRSPVNGIRG-RTFYEREDDLVAIAGCSGNAA-IKLVLIDPETLEVKKESEDEISWQ-SSL 446 (489)
T ss_pred CCCcceeEEEEeCCCCceecccccceecc-ceeEEcCCCEEEEeccCCchh-eEEEecCcccceeeeecccccccc-Cce
Confidence 34567889999999976444344443332 345566788888888854422 223333666554443333333322 244
Q ss_pred EEECCEEEEE
Q psy11771 233 AALDGAIYCV 242 (347)
Q Consensus 233 ~~~~~~iyv~ 242 (347)
...++.+|++
T Consensus 447 ~~~~~~iyaV 456 (489)
T PF05262_consen 447 IVDGQMIYAV 456 (489)
T ss_pred EEcCCeEEEE
Confidence 4456677755
No 222
>KOG2075|consensus
Probab=21.50 E-value=71 Score=30.30 Aligned_cols=47 Identities=11% Similarity=0.297 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHhc-----------------cccccccccCCCChHHHHHhcccccccccCh
Q psy11771 48 SSCGNYILPTAWVSVA-----------------LQLLRHVKLPLLARDFLMNSVESESLIKEST 94 (347)
Q Consensus 48 ~E~~v~~~~~~Wv~~~-----------------~~ll~~vr~~~l~~~~l~~~l~~~~l~~~~~ 94 (347)
+|-.+|+|+++|+... ...+..+||+.+..+.+....+...+....+
T Consensus 281 ~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl~~~l~lirfp~m~~Eefa~~~e~sgIl~d~e 344 (521)
T KOG2075|consen 281 REFRLFEAALKWAEAECQRSGGPVNGQNKRKVLGRALSLIRFPFMNIEEFARGVEQSGILTDRE 344 (521)
T ss_pred hHHHHHHHHHhhccCcchhhcCCCCccchhhhhhheeeeecccccchhhhccCccccCCccccc
Confidence 4889999999999876 6778999999999888766666655554443
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=20.66 E-value=4.8e+02 Score=21.38 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=48.6
Q ss_pred CCEEEEEcCcCCCCccceEEEEeCCCCcEEecCCCCCCCcceEEEEECCEEEEEcccCCCccCCeEEEEECCCCeEEEcC
Q psy11771 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIA 268 (347)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 268 (347)
++++.++-|.. ...+..||... ..+..++......-.-.-+|++.++||..+.. .++..||..+ ++.+.
T Consensus 71 g~~favi~g~~----~~~v~lyd~~~---~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~--G~l~~wd~~~--~~~i~ 139 (194)
T PF08662_consen 71 GNEFAVIYGSM----PAKVTLYDVKG---KKIFSFGTQPRNTISWSPDGRFLVLAGFGNLN--GDLEFWDVRK--KKKIS 139 (194)
T ss_pred CCEEEEEEccC----CcccEEEcCcc---cEeEeecCCCceEEEECCCCCEEEEEEccCCC--cEEEEEECCC--CEEee
Confidence 56666665522 13788899863 33333433222222233478888888875332 5788999884 44554
Q ss_pred CCCCCCcceEEEEE--CCEEEEEec
Q psy11771 269 PMLSRRSTHEVVNI--EGYLLTMGG 291 (347)
Q Consensus 269 ~~~~~~~~~~~~~~--~~~lyv~GG 291 (347)
...... .+.+.. +|+.++...
T Consensus 140 ~~~~~~--~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 140 TFEHSD--ATDVEWSPDGRYLATAT 162 (194)
T ss_pred ccccCc--EEEEEEcCCCCEEEEEE
Confidence 433332 223333 566555544
Done!