RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11771
(347 letters)
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 98.7 bits (246), Expect = 9e-23
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 5/192 (2%)
Query: 131 PYVFAIGTCSFDGLLYACGGYDGAS-CLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVE 189
YV+ G+ + ++Y GG + + ++S+ YD T W+ P + R+ + V
Sbjct: 283 HYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN 342
Query: 190 NCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGG-NDGT 248
N +Y +GG ++ +VE P KW P + R + V ++ IY +GG +
Sbjct: 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKND 402
Query: 249 MCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGG---NDGSSSLNSVEKYD 305
+ + E F++ N W +P+ + +G + +GG D N VE Y+
Sbjct: 403 ELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYN 462
Query: 306 PKLNKWQLLTPM 317
P NKW L+ +
Sbjct: 463 PVTNKWTELSSL 474
Score = 97.1 bits (242), Expect = 3e-22
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 181 RYCRIAVVEN-CLYALGGFDSTNY-QASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGA 238
YC +VV N +Y +GG + N SV D + W VP + R + GV +
Sbjct: 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNR 344
Query: 239 IYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGG-NDGSSS 297
IY +GG ++ +++ E + + W P++ R VVN+ + +GG +
Sbjct: 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL 404
Query: 298 LNSVEKYDPKLNKWQLLTPMLTRRSSIGAAV 328
L +VE + NKW +P+ A
Sbjct: 405 LKTVECFSLNTNKWSKGSPLPISHYGGCAIY 435
Score = 86.0 bits (213), Expect = 2e-18
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 4/181 (2%)
Query: 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALG 196
G F+ +Y GG + L+++E + P W P + R + V N +Y +G
Sbjct: 337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIG 396
Query: 197 GFDSTNYQA-SVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGG---NDGTMCMS 252
G + +VE KW+ + DG IY +GG D +
Sbjct: 397 GISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYN 456
Query: 253 SGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQ 312
E +N N W ++ + R + + +GG+ +N +E YD K N W
Sbjct: 457 IVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516
Query: 313 L 313
L
Sbjct: 517 L 517
Score = 72.5 bits (178), Expect = 6e-14
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 216 KWAPVPSMSSRRSSC--GVAALDGAIYCVGG-NDGTMCMSSGERFNVRRNSWEPIAPMLS 272
+ + ++ G L+ IY +GG N + ++S ++ + SW + ++
Sbjct: 272 PLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY 331
Query: 273 RRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLETL 332
R V + +GG S SLN+VE + P +KW+ P++ R + + L
Sbjct: 332 PRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNL 391
Score = 47.8 bits (114), Expect = 5e-06
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Query: 118 TKRTQERKPEGMLPYVFAIGTC-SFDGLLYACGGY---DGASCLSSMERYDPLTGVWSSC 173
+ T + LP G DG +Y GG D + +E Y+P+T W+
Sbjct: 412 SLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL 471
Query: 174 PAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPV 220
++ R + + N +Y +GG Y +E D + W
Sbjct: 472 SSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518
Score = 28.2 bits (63), Expect = 7.7
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 4 APMLYRRSRSGVAGLGKMLYVVGGFY 29
P+++ R V + ++YV+GG
Sbjct: 374 PPLIFPRYNPCVVNVNNLIYVIGGIS 399
>gnl|CDD|128874 smart00612, Kelch, Kelch domain.
Length = 47
Score = 65.7 bits (161), Expect = 3e-14
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 191 CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG 237
+Y +GGFD SVE DP KW P+PSM + RS GVA ++G
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 64.1 bits (157), Expect = 1e-13
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 144 LLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN 190
+Y GG+DG L S+E YDP T W+ P+M T R +AV+
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 57.2 bits (139), Expect = 3e-11
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 286 LLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLE 330
+ +GG DG L SVE YDP+ NKW L M T RS G AV+
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46
Score = 51.0 bits (123), Expect = 5e-09
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 239 IYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEG 284
IY VGG DG + S E ++ N W P+ M + RS H V I G
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 58.8 bits (143), Expect = 1e-11
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 226 RRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPM 270
RS GV L G IY +GG DG +SS E ++ N+W + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSM 45
Score = 56.1 bits (136), Expect = 1e-10
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMT 177
G G +Y GGYDG LSS+E YDP T WS P+M
Sbjct: 6 GVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 55.7 bits (135), Expect = 1e-10
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 179 RRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMS 224
R + V+ +Y +GG+D +SVE DP W+ +PSM
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 55.4 bits (134), Expect = 2e-10
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 273 RRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPM 317
RS VV + G + +GG DG SL+SVE YDP+ N W L M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSM 45
Score = 27.6 bits (62), Expect = 1.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 9 RRSRSGVAGLGKMLYVVGGF 28
RS +GV LG +YV+GG+
Sbjct: 1 PRSGAGVVVLGGKIYVIGGY 20
>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional.
Length = 480
Score = 50.8 bits (121), Expect = 6e-07
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 14/183 (7%)
Query: 131 PYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN 190
P ++A G + + LY GG + S+ER+ W + P++ R +A + N
Sbjct: 308 PRLYASGVPA-NNKLYVVGGLPNPT---SVERWFHGDAAWVNMPSLLKPRCNPAVASINN 363
Query: 191 CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMC 250
+Y +GG T+ + E L P +W PS ++ VG N C
Sbjct: 364 VIYVIGGHSETD--TTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRNAEFYC 421
Query: 251 MSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNK 310
SS N+W I + R E++ ++ LL +GG S ++++E Y+ +
Sbjct: 422 ESS--------NTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473
Query: 311 WQL 313
W +
Sbjct: 474 WNI 476
Score = 41.2 bits (96), Expect = 6e-04
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
Query: 183 CRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCV 242
C V +Y +GG+ + + ++ W P+P M+S R + +Y V
Sbjct: 265 CTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVV 324
Query: 243 GGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVE 302
GG +S ER+ +W + +L R V +I + +GG+ S + + E
Sbjct: 325 GGLPNP---TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGH--SETDTTTE 379
Query: 303 KYDPKLNKWQL 313
P ++WQ
Sbjct: 380 YLLPNHDQWQF 390
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif.
Length = 50
Score = 45.1 bits (107), Expect = 7e-07
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 138 TCSFDGLLYACGGYDGASCLSS-MERYDPLTGVWSSCPAMTTRR 180
S G +Y GGY S S+ + YDP TG W P + T R
Sbjct: 7 AVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 40.9 bits (96), Expect = 2e-05
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 227 RSSCGVAALDGAIYCVGGN-DGTMCMSSGERFNVRRNSWEPIAPMLSRR 274
R+ ++ G IY GG +G+ + ++ SWE + P+ + R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 40.5 bits (95), Expect = 4e-05
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 274 RSTHEVVNIEGYLLTMGGN-DGSSSLNSVEKYDPKLNKWQLLTPMLTRR 321
R+ H V++ G + GG +GS + N V YDP+ W+ L P+ T R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 38.2 bits (89), Expect = 2e-04
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 180 RRYCRIAVVENCLYALGGF-DSTNYQASVERLDPRMGKWAPVPSMSSRR 227
R V +Y GG+ + + V DP G W +P + + R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 50.0 bits (119), Expect = 9e-07
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 174 PAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVA 233
P M R +AV+++ +YA+GG + TN + ++E KW +P M SS G+
Sbjct: 336 PPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC 395
Query: 234 ALDGAIYCVGG 244
LD IY +GG
Sbjct: 396 VLDQYIYIIGG 406
Score = 43.5 bits (102), Expect = 1e-04
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 186 AVVENCLYALGGFDSTNYQAS-VERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGG 244
A+V+N + GG++ N + V +++ +P M R +A +D IY +GG
Sbjct: 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGG 359
Query: 245 NDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGG------------- 291
+GT + E + + + W+ + M S++ + ++ Y+ +GG
Sbjct: 360 QNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHM 419
Query: 292 -----NDGSSSLNSVEKYDPKLNKWQLL 314
+ + S N V +YD N W+ L
Sbjct: 420 NSIDMEEDTHSSNKVIRYDTVNNIWETL 447
Score = 39.6 bits (92), Expect = 0.002
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 233 AALDGAIYCVGG-NDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGG 291
A +D I GG N ++ + N+ + PM+ R + I+ + +GG
Sbjct: 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGG 359
Query: 292 NDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLE 330
+G++ ++E Y +KW++L M SS G VL+
Sbjct: 360 QNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLD 398
Score = 30.4 bits (68), Expect = 1.5
Identities = 36/154 (23%), Positives = 54/154 (35%), Gaps = 20/154 (12%)
Query: 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGF--- 198
D +YA GG +G + ++E Y W P M + V++ +Y +GG
Sbjct: 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEH 410
Query: 199 ---------------DSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVG 243
+ T+ V R D W +P+ + GV + IY V
Sbjct: 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVC 470
Query: 244 G-NDGTMCMSSGERFNVRR-NSWEPIAPMLSRRS 275
D + R+N N WE I SR S
Sbjct: 471 DIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain.
Length = 49
Score = 36.5 bits (85), Expect = 8e-04
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 226 RRSSCGVAALDGAIYCVGGNDGTM-CMSSGERFNVRRNSWEPIAPM 270
R + DG +Y GG + +S F++ N+W + +
Sbjct: 2 RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
Score = 31.1 bits (71), Expect = 0.064
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 142 DGLLYACGGYDG-ASCLSSMERYDPLTGVWSSCPAMTT 178
DG LY GG + S LS + +D T W+ P++ +
Sbjct: 12 DGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLPS 49
Score = 29.5 bits (67), Expect = 0.27
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 284 GYLLTMGGNDGSSS-LNSVEKYDPKLNKWQLLTPM 317
G L GG + S L+ V +D N W L +
Sbjct: 13 GRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 35.7 bits (83), Expect = 0.001
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 142 DGLLYACGGYDGAS-CLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV 188
G +Y GG L+ + YD T W + R V+
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 32.6 bits (75), Expect = 0.022
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 286 LLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVL 329
+ G DG + LN + YD N W+ L + R+ A V+
Sbjct: 5 YVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 31.9 bits (73), Expect = 0.033
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 190 NCLYALGGFDSTN-YQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL 235
+Y GG + D W + + R+ +
Sbjct: 2 GKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 31.5 bits (72), Expect = 0.046
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 236 DGAIYCVGGNDGTMCMSSG-ERFNVRRNSWEPIAPMLSRRSTHEVV 280
G IY GG + +++ N+WE + + R+ H
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAAT 46
>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family
protein. Members of this protein family show
essentially full-length homology, cyclically permuted,
to YjhT from Escherichia coli. YjhT was shown to act as
a mutarotase for sialic acid, and by this ability to be
able to act as a virulence factor. Members of the YjhT
family (TIGR03547) and this cyclically-permuted family
have multiple repeats of the beta-propeller-forming
Kelch repeat.
Length = 323
Score = 39.8 bits (93), Expect = 0.001
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 188 VENCLYALGGFDSTNYQASVERLDPRMGKWA----PVPSMSSRRSSCGVAALDGAIYCVG 243
EN +Y +GG +S+ +SV R+ K A +PS+ + DG +Y G
Sbjct: 71 TENGIYYIGGSNSSESFSSVYRITLDESKEALIIETLPSLPFAMDNGSATYKDGKLYVGG 130
Query: 244 GNDGTMCMSSGERFNVRRNSWE-----PIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSL 298
GN + FN+ WE P AP R V ++ L GG D +
Sbjct: 131 GNANGKPSNKFYCFNLETQEWEELPDFPGAP----RVQPVCVKLQNELYVFGGGDNIAYT 186
Query: 299 NSVEKYDPKLNKWQLLT 315
+ KY PK W+ +
Sbjct: 187 D-GYKYSPKTGTWEKVA 202
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein.
Length = 470
Score = 36.9 bits (85), Expect = 0.012
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 31/126 (24%)
Query: 212 PRMGKWAPVPSMSS---RRSSCGVAALDGAIYCVGGN-------DGTMCMSSGERFNVRR 261
+GKW V R S G+A + IY GG D + + F++
Sbjct: 148 KLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYV-----FDLET 202
Query: 262 NSWEPIAPMLSRRSTHEV----------VNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKW 311
+W I+P +T +V V+I L GG D S N +D N+W
Sbjct: 203 RTWS-ISP-----ATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEW 256
Query: 312 QLLTPM 317
+LLTP+
Sbjct: 257 KLLTPV 262
Score = 36.9 bits (85), Expect = 0.013
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 11/159 (6%)
Query: 163 YDPLTGVWSSCPAM-TTRRRYC---RIAVVENCLYALGGFDSTNYQASVERLDPRMGKW- 217
+D T WS PA C R+ + + LY GG D++ D +W
Sbjct: 198 FDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWK 257
Query: 218 --APVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSW---EPIAPMLS 272
PV + RS +AA + +Y GG T + + + +N+ W S
Sbjct: 258 LLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFS 317
Query: 273 RRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKW 311
R + ++G + + G +G ++ V YDP +KW
Sbjct: 318 IRGGAGLEVVQGKVWVVYGFNG-CEVDDVHYYDPVQDKW 355
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that Drosophila
ring canal kelch protein is related to Galactose Oxidase
for which a structure has been solved. The kelch motif
forms a beta sheet. Several of these sheets associate to
form a beta propeller structure as found in pfam00064,
pfam00400 and pfam00415.
Length = 48
Score = 31.2 bits (71), Expect = 0.071
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 138 TCSFDGLLYACGGY--DGASCLSSMERYDPLTGVWSSCPAM 176
+ G LY GG G S + DP T VW+ PA+
Sbjct: 7 SVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 29.6 bits (67), Expect = 0.26
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 273 RRSTHEVVNIEGYLLTMGG--NDGSSSLNSVEKYDPKLNKWQLLTPM 317
R H V + G L +GG G S + + DP+ N W L +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 28.1 bits (63), Expect = 0.72
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 179 RRRYCRIAVVENCLYALGGFDSTN--YQASVERLDPRMGKWAPVPSM 223
R VV LY +GG + + LDP W +P++
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 25.8 bits (57), Expect = 4.9
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 226 RRSSCGVAALDGAIYCVGGNDGTMCMSSGE--RFNVRRNSWEPIAPM 270
R + G +Y VGG+ G +SS + + N W + +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein.
Length = 341
Score = 33.8 bits (77), Expect = 0.13
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
Query: 145 LYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTR-----RRYCRIAVVENCLYALGGFD 199
LY GG D S YD + W+ + R + +A EN +Y GG
Sbjct: 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVS 147
Query: 200 STNYQASVERL------DPRMGKWAPVPSMS---SRRSSCGVAALDGAIYCVGG 244
+ ER + GKW +P +R G A + G I+ V G
Sbjct: 148 KGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYG 201
Score = 30.7 bits (69), Expect = 1.2
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 22/119 (18%)
Query: 215 GKWAPVPSMSSR----RSSCGVAALDGAIYCVGGN-------DGTMCMSSGERFNVRRNS 263
G W V + R S G+A + +Y GG D + + F+ ++
Sbjct: 7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYV-----FDFNTHT 61
Query: 264 WEPIAPM---LSRRSTHEV--VNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPM 317
W IAP + R S V V + L GG D + YD N+W LT +
Sbjct: 62 WS-IAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKL 119
>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase;
Provisional.
Length = 376
Score = 33.1 bits (76), Expect = 0.21
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 27/105 (25%)
Query: 231 GVAALDGAIYCVG-GNDGTMCMSSGERF-----NVRRNSWEPIA--PMLSR-RSTHEVVN 281
G A+D VG G S+G + N W IA P R ++ ++
Sbjct: 32 GTGAIDNNTVYVGLG-------SAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID 84
Query: 282 IEGYLLTMGG-----NDGSSSL-NSVEKYDPKLNKWQLL---TPM 317
G L GG ++GS + + V KYDPK N WQ L +P+
Sbjct: 85 --GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPV 127
Score = 28.8 bits (65), Expect = 5.0
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 186 AVVENCLYALGGFDSTNYQAS------VERLDPRMGKWAPVPSMSSR--RSSCGVAALDG 237
A ++ LY GG TN + S V + DP+ W + + S V+ +G
Sbjct: 81 AFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNG 140
Query: 238 AIYCVGG 244
Y GG
Sbjct: 141 KAYITGG 147
>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family. Members of
this protein family contain multiple copies of the
beta-propeller-forming Kelch repeat. All are full-length
homologs to YjhT of Escherichia coli, which has been
identified as a mutarotase for sialic acid. This protein
improves bacterial ability to obtain host sialic acid,
and thus serves as a virulence factor. Some bacteria
carry what appears to be a cyclically permuted homolog
of this protein.
Length = 346
Score = 31.5 bits (72), Expect = 0.60
Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 22/98 (22%)
Query: 231 GVAALDGAIYCVG-GNDGTMCMSSGERF-----NVRRNSWEPIA--PMLSRRSTHEVVNI 282
G A+ G VG G S+G + W+ IA P R I
Sbjct: 11 GTGAIIGDKVYVGLG-------SAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA-I 62
Query: 283 EGYLLTMGGN--DGSSS----LNSVEKYDPKLNKWQLL 314
+G L GG S + V +YDPK N WQ L
Sbjct: 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKL 100
>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family
protein.
Length = 1057
Score = 30.6 bits (69), Expect = 1.6
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 136 IGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRR---RYCRIAVVENCL 192
IG S +L GG D ++ M+ + + S +RR RY + + +CL
Sbjct: 282 IGNISLSDIL--TGGSDATPNVTGMDWINTILDTGSILGFQGSRRDILRYGSLGIALSCL 339
Query: 193 YALGGFDSTNYQA 205
Y F +TN++A
Sbjct: 340 Y----FAATNWKA 348
>gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown].
Length = 370
Score = 29.9 bits (67), Expect = 2.0
Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 16/120 (13%)
Query: 140 SFDGLLYACGGYDGASCLSSMERYDPLTGV--WSSCPAMTTRRR--------YCRIAVVE 189
G +Y G L + G WS + T R V+
Sbjct: 195 IASGTVYV-GSDGYDGILY---ALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVD 250
Query: 190 NCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTM 249
+YA G + + + A S + VA DG +Y +G D
Sbjct: 251 GGVYA-GSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVY-IGFTDNDG 308
>gnl|CDD|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase
(NAPRTase), subgroup A. Nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
This salvage pathway serves to recycle NAD degradation
products. This subgroup is present in bacteria and
eukaryota (except funghi).
Length = 327
Score = 29.8 bits (68), Expect = 2.2
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 216 KWAPVPSMSSRRSSCGVAALDGAIYC-VGGNDGTMCMSSGERFNV 259
P+ RR+ AAL A +GG DGT + +G+ + +
Sbjct: 143 GGRPLLEFGLRRAQGPDAALSAARAAYIGGFDGTSNVLAGKLYGI 187
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch. This domain is found
associated with pfam00651 and pfam01344. The BACK domain
is found juxtaposed to the BTB domain; they are
separated by as little as two residues. This family
appears to be closely related to the BTB domain (Finn
RD, personal observation).
Length = 101
Score = 27.9 bits (63), Expect = 3.0
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 65 QLLRHVKLPLLARDFLMN 82
+LL V+LPLL+ ++L++
Sbjct: 83 ELLSAVRLPLLSPEYLLD 100
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch. The BACK domain is
found juxtaposed to the BTB domain; they are separated
by as little as two residues.
Length = 101
Score = 27.7 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 56 PTAWVSVALQLLRHVKLPLLARDFLMN 82
P +LL HV+LPLL+ D+L+
Sbjct: 74 PEKRREHLPELLEHVRLPLLSPDYLLE 100
>gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins.
EF-Tu subfamily. This subfamily includes orthologs of
translation elongation factor EF-Tu in bacteria,
mitochondria, and chloroplasts. It is one of several
GTP-binding translation factors found in the larger
family of GTP-binding elongation factors. The eukaryotic
counterpart, eukaryotic translation elongation factor 1
(eEF-1 alpha), is excluded from this family. EF-Tu is
one of the most abundant proteins in bacteria, as well
as, one of the most highly conserved, and in a number of
species the gene is duplicated with identical function.
When bound to GTP, EF-Tu can form a complex with any
(correctly) aminoacylated tRNA except those for
initiation and for selenocysteine, in which case EF-Tu
is replaced by other factors. Transfer RNA is carried to
the ribosome in these complexes for protein translation.
Length = 195
Score = 27.9 bits (63), Expect = 6.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 230 CGVAALDGAIYCVGGNDGTM 249
G A +DGAI V DG M
Sbjct: 84 TGAAQMDGAILVVSATDGPM 103
>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 381
Score = 28.1 bits (63), Expect = 7.0
Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 231 GVAALDG-AIYCVGGNDGTMCMSSGERFNVRRNSWEPIA--PMLSR-RSTHEVVNIEGYL 286
G AL G +Y G+ GT W IA P +R ++ V+ + Y+
Sbjct: 40 GAGALIGDTVYVGLGSAGTAFYV--LDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYV 97
Query: 287 LTMGGNDGSSS---LNSVEKYDPKLNKWQLLTPMLTRRSSIG 325
G SSS N +YDP N W L RS G
Sbjct: 98 FGGYGKSVSSSPQVFNDAYRYDPSTNSWH----KLDTRSPTG 135
>gnl|CDD|224531 COG1615, COG1615, Uncharacterized conserved protein [Function
unknown].
Length = 885
Score = 28.5 bits (64), Expect = 7.1
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 273 RRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTR 320
R S +V+ Y DG+ + + DP +N W + P +
Sbjct: 585 RNSVKALVD--AY-------DGTVTFYQSDLNDPVINAWMKIFPGTFK 623
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,669,164
Number of extensions: 1643721
Number of successful extensions: 1168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1143
Number of HSP's successfully gapped: 58
Length of query: 347
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 249
Effective length of database: 6,590,910
Effective search space: 1641136590
Effective search space used: 1641136590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)