RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11771
(347 letters)
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 252 bits (645), Expect = 1e-82
Identities = 77/193 (39%), Positives = 108/193 (55%)
Query: 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALG 196
G + ++Y GG+DG+ +SMERYDP WS M T R + V +Y LG
Sbjct: 107 GATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLG 166
Query: 197 GFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGER 256
G+D N SVE+ DP G W V M+++RS GVA L+ IY VGG DGT +SS E
Sbjct: 167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226
Query: 257 FNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTP 316
+N+R +SW + M + R + G L + G DG+S L+S+E YDP ++ W+++T
Sbjct: 227 YNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTS 286
Query: 317 MLTRRSSIGAAVL 329
M T+R G VL
Sbjct: 287 MGTQRCDAGVCVL 299
Score = 238 bits (610), Expect = 2e-77
Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 3/196 (1%)
Query: 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLT---GVWSSCPAMTTRRRYCRIAVVENCLY 193
+ S +Y GGYDG S LSS+E D GVW S M RR + + +Y
Sbjct: 57 ASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIY 116
Query: 194 ALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSS 253
GGFD + S+ER DP + +W+ + M + R G+ G IYC+GG DG ++S
Sbjct: 117 VSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNS 176
Query: 254 GERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQL 313
E+++ W + PM ++RS V + ++ +GG DG++ L+SVE Y+ + + W
Sbjct: 177 VEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236
Query: 314 LTPMLTRRSSIGAAVL 329
+T M T R +GA VL
Sbjct: 237 VTSMTTPRCYVGATVL 252
Score = 227 bits (581), Expect = 6e-73
Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 4/196 (2%)
Query: 139 CSFDGLLYACGGYDGASC-LSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGG 197
+ +L GG+ + +E+YDP T WS P++T +RRY + + +Y +GG
Sbjct: 11 LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGG 70
Query: 198 FDSTNYQASVERLDP---RMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSG 254
+D + +SVE LD G W V M+ RR G L IY GG DG+ +S
Sbjct: 71 YDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSM 130
Query: 255 ERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLL 314
ER++ + W + M + R +V G + +GG DG + LNSVEKYDP W +
Sbjct: 131 ERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190
Query: 315 TPMLTRRSSIGAAVLE 330
TPM T+RS G A+L
Sbjct: 191 TPMATKRSGAGVALLN 206
Score = 185 bits (472), Expect = 9e-57
Identities = 53/152 (34%), Positives = 82/152 (53%)
Query: 129 MLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV 188
M G G++Y GGYDG + L+S+E+YDP TG W++ M T+R +A++
Sbjct: 146 MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL 205
Query: 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGT 248
+ +Y +GGFD T + +SVE + R W V SM++ R G L G +Y + G DG
Sbjct: 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGN 265
Query: 249 MCMSSGERFNVRRNSWEPIAPMLSRRSTHEVV 280
+SS E ++ +SWE + M ++R V
Sbjct: 266 SLLSSIECYDPIIDSWEVVTSMGTQRCDAGVC 297
Score = 131 bits (332), Expect = 5e-36
Identities = 36/100 (36%), Positives = 54/100 (54%)
Query: 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALG 196
G + +Y GG+DG + LSS+E Y+ T W++ +MTT R Y V+ LYA+
Sbjct: 201 GVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIA 260
Query: 197 GFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALD 236
G+D + +S+E DP + W V SM ++R GV L
Sbjct: 261 GYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300
Score = 107 bits (269), Expect = 5e-27
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 222 SMSSRRSSCGVAALDGAIYCVGGNDGTMC-MSSGERFNVRRNSWEPIAPMLSRRSTHEVV 280
SM R+ + A + + VGG + E+++ + W + + +R V
Sbjct: 1 SMQGPRTRARLGA-NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV 59
Query: 281 NIEGYLLTMGGNDGSSSLNSVEKYDPKLNK---WQLLTPMLTRRSSIGAAVL 329
++ + +GG DG S L+SVE D ++ W + PM RR GA L
Sbjct: 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL 111
Score = 38.8 bits (91), Expect = 0.001
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 1 MPIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+ M R G L LY + G+
Sbjct: 235 TTVTSMTTPRCYVGATVLRGRLYAIAGY 262
Score = 38.8 bits (91), Expect = 0.002
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 1 MPIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+APM RR +G LG M+YV GGF
Sbjct: 94 YSVAPMNVRRGLAGATTLGDMIYVSGGF 121
Score = 38.4 bits (90), Expect = 0.002
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+ PM +RS +GVA L +YVVGGF
Sbjct: 189 NVTPMATKRSGAGVALLNDHIYVVGGF 215
Score = 38.0 bits (89), Expect = 0.003
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+ M R +G+ ++Y +GG+
Sbjct: 142 MLGDMQTAREGAGLVVASGVIYCLGGY 168
Score = 38.0 bits (89), Expect = 0.003
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+ + +R L +YV+GG+
Sbjct: 45 FLPSITRKRRYVASVSLHDRIYVIGGY 71
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 249 bits (638), Expect = 2e-81
Identities = 76/192 (39%), Positives = 104/192 (54%)
Query: 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALG 196
G DG +YA GG G +S+ERY+P W M TRR +AV+ LYA+G
Sbjct: 116 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG 175
Query: 197 GFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGER 256
GFD TN S E P +W + +M++ RS GV L IY GG DG ++S ER
Sbjct: 176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVER 235
Query: 257 FNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTP 316
++V +W +APM RRS + +G + +GG DG + L+SVE YDP + W +T
Sbjct: 236 YDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR 295
Query: 317 MLTRRSSIGAAV 328
M + RS +G AV
Sbjct: 296 MTSGRSGVGVAV 307
Score = 238 bits (609), Expect = 3e-77
Identities = 74/197 (37%), Positives = 103/197 (52%), Gaps = 4/197 (2%)
Query: 137 GTCSFDGLLYACGGY----DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCL 192
C GLLYA GG DG + S+++ Y+P+T WS C M+ R + V++ +
Sbjct: 65 AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHI 124
Query: 193 YALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMS 252
YA+GG + SVER +P +W V M +RR GVA L+ +Y VGG DGT ++
Sbjct: 125 YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLN 184
Query: 253 SGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQ 312
S E + RN W I M + RS V + + GG DG LNSVE+YD + W
Sbjct: 185 SAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT 244
Query: 313 LLTPMLTRRSSIGAAVL 329
+ PM RRS++G V
Sbjct: 245 FVAPMKHRRSALGITVH 261
Score = 226 bits (578), Expect = 2e-72
Identities = 70/195 (35%), Positives = 100/195 (51%), Gaps = 5/195 (2%)
Query: 139 CSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGF 198
L+Y GGY LS +E Y+P G W + R VV LYA+GG
Sbjct: 21 PKVGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 79
Query: 199 ----DSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSG 254
D ++++ +P +W+P MS R+ GV +DG IY VGG+ G + +S
Sbjct: 80 NNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSV 139
Query: 255 ERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLL 314
ER+ R+ W +APML+RR V + L +GG DG++ LNS E Y P+ N+W+++
Sbjct: 140 ERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 199
Query: 315 TPMLTRRSSIGAAVL 329
T M T RS G VL
Sbjct: 200 TAMNTIRSGAGVCVL 214
Score = 183 bits (467), Expect = 6e-56
Identities = 56/152 (36%), Positives = 75/152 (49%)
Query: 129 MLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVV 188
ML +G + LLYA GG+DG + L+S E Y P W AM T R + V+
Sbjct: 155 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL 214
Query: 189 ENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGT 248
NC+YA GG+D + SVER D W V M RRS+ G+ G IY +GG DG
Sbjct: 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 274
Query: 249 MCMSSGERFNVRRNSWEPIAPMLSRRSTHEVV 280
+ S E ++ ++W + M S RS V
Sbjct: 275 TFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 306
Score = 172 bits (437), Expect = 2e-51
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 170 WSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSS 229
+ R V +Y GG+ + +E +P G W + + RS
Sbjct: 6 HHHHSSGLVPRGSHA-PKVGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSG 63
Query: 230 CGVAALDGAIYCVGG----NDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGY 285
+ G +Y VGG DG S+ + +N N W P APM R+ V I+G+
Sbjct: 64 LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGH 123
Query: 286 LLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLE 330
+ +GG+ G NSVE+Y+P+ ++W L+ PMLTRR +G AVL
Sbjct: 124 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN 168
Score = 39.2 bits (92), Expect = 0.001
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 1 MPIAPMLYRRSRSGVAGLGKMLYVVGGF 28
P APM R+R GV + +Y VGG
Sbjct: 103 SPCAPMSVPRNRIGVGVIDGHIYAVGGS 130
Score = 38.5 bits (90), Expect = 0.002
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+APM +RRS G+ +YV+GG+
Sbjct: 245 FVAPMKHRRSALGITVHQGRIYVLGGY 271
Score = 38.1 bits (89), Expect = 0.003
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
I M RS +GV L +Y GG+
Sbjct: 198 MITAMNTIRSGAGVCVLHNCIYAAGGY 224
Score = 37.7 bits (88), Expect = 0.003
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+A + RS +G +LY VGG
Sbjct: 53 RLADLQVPRSGLAGCVVGGLLYAVGGR 79
Score = 37.7 bits (88), Expect = 0.004
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+APML RR GVA L ++LY VGGF
Sbjct: 151 LVAPMLTRRIGVGVAVLNRLLYAVGGF 177
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 242 bits (619), Expect = 1e-78
Identities = 75/196 (38%), Positives = 110/196 (56%), Gaps = 3/196 (1%)
Query: 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALG 196
G +GLLYA GG+DG++ LSS+E Y+ + W M TRR + VV LYA+G
Sbjct: 103 GAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVG 162
Query: 197 GFDSTNYQ--ASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSG 254
G+D + Q ++VE + +W + MS+RRS GV L+ +Y VGG+DG + S
Sbjct: 163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSV 222
Query: 255 ERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLL 314
E ++ N+W +A M R V + G L +GG+DGS +L SVE Y+P +KW ++
Sbjct: 223 EVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282
Query: 315 TP-MLTRRSSIGAAVL 329
+ M T RS G V+
Sbjct: 283 SSCMSTGRSYAGVTVI 298
Score = 227 bits (582), Expect = 4e-73
Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 15/214 (7%)
Query: 118 TKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMT 177
+ RT+ R P + L+ GG + S+E YD W +
Sbjct: 3 SVRTRLRTPMNL------------PKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAELP 49
Query: 178 TRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG 237
+RR + + ++A+GGF+ + +V+ DP +W V +M RRS+ G A L+G
Sbjct: 50 SRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNG 109
Query: 238 AIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSS- 296
+Y VGG DG+ +SS E +N++ N W +APM +RRS+ V + G L +GG D +S
Sbjct: 110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR 169
Query: 297 -SLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVL 329
L++VE Y+ N+W + M TRRS G VL
Sbjct: 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL 203
Score = 179 bits (455), Expect = 3e-54
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Query: 176 MTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAAL 235
M+ R R + + +GG + SVE D + +W V + SRR G+ +
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGG-QAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM 60
Query: 236 DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGS 295
G ++ VGG +G++ + + + ++ ++ W +A M RRST + G L +GG DGS
Sbjct: 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 296 SSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLE 330
+ L+SVE Y+ K N+W + PM TRRSS+G V+
Sbjct: 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVG 155
Score = 130 bits (328), Expect = 2e-35
Identities = 41/104 (39%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALG 196
G + LLYA GG+DG S+E YDP T W M RR + V LY +G
Sbjct: 199 GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVG 258
Query: 197 GFDSTNYQASVERLDPRMGKWAPVPS-MSSRRSSCGVAALDGAI 239
G D + ASVE +P KW V S MS+ RS GV +D +
Sbjct: 259 GDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
Score = 113 bits (285), Expect = 3e-29
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 222 SMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVN 281
SMS R L + VGG + S E ++ + W +A + SRR +V
Sbjct: 1 SMSVRTRLRTPMNLPKLMVVVGGQAPK-AIRSVECYDFKEERWHQVAELPSRRCRAGMVY 59
Query: 282 IEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLE 330
+ G + +GG +GS + +V+ YDP ++W + M RRS++GAAVL
Sbjct: 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN 108
Score = 39.6 bits (93), Expect = 9e-04
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 1 MPIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+A M RRS G A L +LY VGGF
Sbjct: 90 TSVANMRDRRSTLGAAVLNGLLYAVGGF 117
Score = 39.2 bits (92), Expect = 0.001
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+A M R +GV + +LYVVGG
Sbjct: 234 QVADMNMCRRNAGVCAVNGLLYVVGGD 260
Score = 38.4 bits (90), Expect = 0.002
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+APM RRS GV +G +LY VGG+
Sbjct: 138 HVAPMNTRRSSVGVGVVGGLLYAVGGY 164
Score = 38.4 bits (90), Expect = 0.002
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
IA M RRS +GV L +LY VGG
Sbjct: 187 YIAEMSTRRSGAGVGVLNNLLYAVGGH 213
Score = 37.3 bits (87), Expect = 0.005
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+A + RR R+G+ + +++ VGGF
Sbjct: 44 QVAELPSRRCRAGMVYMAGLVFAVGGF 70
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 234 bits (599), Expect = 1e-75
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 6/201 (2%)
Query: 137 GTCSFDGLLYACGGYD-GASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYAL 195
C+ +G +Y GG + G S L E YD T W + P+M T+R + +Y
Sbjct: 96 AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVC 155
Query: 196 GGFDSTNYQ----ASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCM 251
GG N S E DP W + M R + G+ + I+ VGG +G +
Sbjct: 156 GGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGL 215
Query: 252 SSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKW 311
+ E ++++ N W+ ++PM + T + + + + G G L + +Y+ + +KW
Sbjct: 216 DNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275
Query: 312 QLLTPMLT-RRSSIGAAVLET 331
+ + +S V++T
Sbjct: 276 VANSKVRAFPVTSCLICVVDT 296
Score = 219 bits (560), Expect = 7e-70
Identities = 51/217 (23%), Positives = 81/217 (37%), Gaps = 23/217 (10%)
Query: 118 TKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMT 177
+ T+ R+ + D + GG S ++P W+
Sbjct: 1 SMGTRPRRKKH-------------DYRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPF 43
Query: 178 TRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDG 237
+RR +N +Y LGG ++ + W + R S A +G
Sbjct: 44 EKRRDAACVFWDNVVYILGGSQL-FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEG 102
Query: 238 AIYCVGG-NDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSS 296
IY GG G + E ++ R SW ML++R +H +V G + GG+ G++
Sbjct: 103 KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNN 162
Query: 297 S----LNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVL 329
LNS E YDP W L PM+ R + G +
Sbjct: 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV 199
Score = 95.9 bits (239), Expect = 7e-23
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 236 DGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGS 295
D I GG+ S FN + SW I +R V + + +GG+
Sbjct: 12 DYRIALFGGSQP----QSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLF 67
Query: 296 SSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLE 330
+ ++ Y+ + W T R S+ A E
Sbjct: 68 P-IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAE 101
Score = 39.2 bits (92), Expect = 0.001
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
++PM ++ A +G ++YV+ GF
Sbjct: 230 MVSPMPWKGVTVKCAAVGSIVYVLAGF 256
Score = 39.2 bits (92), Expect = 0.001
Identities = 4/28 (14%), Positives = 5/28 (17%)
Query: 1 MPIAPMLYRRSRSGVAGLGKMLYVVGGF 28
R +Y GG
Sbjct: 83 YSKLGPPTPRDSLAACAAEGKIYTSGGS 110
Score = 38.8 bits (91), Expect = 0.001
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+ PM+ R G+ + ++ VGG
Sbjct: 183 ELCPMIEARKNHGLVFVKDKIFAVGGQ 209
Score = 37.3 bits (87), Expect = 0.004
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
ML +R G+ ++YV GG
Sbjct: 132 TKPSMLTQRCSHGMVEANGLIYVCGGS 158
Score = 37.3 bits (87), Expect = 0.005
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
I +R + ++Y++GG
Sbjct: 38 DIRCPFEKRRDAACVFWDNVVYILGGS 64
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 224 bits (572), Expect = 2e-71
Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 18/238 (7%)
Query: 102 EAMKYHLLPEQRSLLTTKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDG------AS 155
A+ Y + + L R + +Y GG
Sbjct: 25 AAVAYDPMENECYLTALAEQIPRN---------HSSIVTQQNQVYVVGGLYVDEENKDQP 75
Query: 156 CLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYALGGFDSTNYQA--SVERLDPR 213
S + D ++ W P + + R + V++ +Y + G D + SV DP
Sbjct: 76 LQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPV 135
Query: 214 MGKWAPVPSMSSRRSSCGVAALDGAIYCVGG-NDGTMCMSSGERFNVRRNSWEPIAPMLS 272
KW+ V ++ + V + +G IYC+GG D C + +N ++ W+ +APM +
Sbjct: 136 AAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT 195
Query: 273 RRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLE 330
RS V +G ++ GG SVE +D K NKW+++T RSSI L
Sbjct: 196 PRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA 253
Score = 219 bits (559), Expect = 2e-69
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 14/205 (6%)
Query: 137 GTCSFDGLLYACGGYD--GASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYA 194
G D +Y G D + L S+ YDP+ WS + + + +Y
Sbjct: 104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC 163
Query: 195 LGG-FDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSS 253
LGG D V +P+ G W + M + RS GVA G I GG +S
Sbjct: 164 LGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSAS 223
Query: 254 GERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDG---------SSSLNSVEKY 304
E F+++ N WE + RS+ +V++ G L +GG + +N + KY
Sbjct: 224 VEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283
Query: 305 DPKLNKWQLLTPMLTRRSSIGAAVL 329
+ +W + R + GA+ L
Sbjct: 284 EDDKKEWAGMLKE--IRYASGASCL 306
Score = 198 bits (505), Expect = 2e-61
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 17/200 (8%)
Query: 140 SFDGLLYACGGYDGASCLSSMERYDPLTGVWS-SCPAMTTRRRYCRIAVVENCLYALGGF 198
L+ ++ YDP+ + A R + I +N +Y +GG
Sbjct: 13 FVKDLILLVND-------TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGL 65
Query: 199 DSTNY------QASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGND--GTMC 250
Q+ +LD +W +P + S R G+ +D IY V G D
Sbjct: 66 YVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEAS 125
Query: 251 MSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGG-NDGSSSLNSVEKYDPKLN 309
+ S ++ W + + + H V++ G + +GG D N V Y+PK
Sbjct: 126 LDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185
Query: 310 KWQLLTPMLTRRSSIGAAVL 329
W+ L PM T RS G A+
Sbjct: 186 DWKDLAPMKTPRSMFGVAIH 205
Score = 172 bits (438), Expect = 2e-51
Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 10/173 (5%)
Query: 129 MLPYVFAIGTCSFDGLLYACGGY-DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAV 187
+ V+ S +G++Y GG D C + + Y+P G W M T R +A+
Sbjct: 145 LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI 204
Query: 188 VENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDG 247
+ + GG ASVE D + KW + RSS + +L G++Y +GG
Sbjct: 205 HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAM 264
Query: 248 TMCMSSG---------ERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGG 291
S ++ + W + + S + L +
Sbjct: 265 IQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKLSK 317
Score = 42.3 bits (100), Expect = 1e-04
Identities = 6/52 (11%), Positives = 15/52 (28%), Gaps = 8/52 (15%)
Query: 280 VNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKW-QLLTPMLTRRSSIGAAVLE 330
+ ++ +L + + YDP N+ R+ +
Sbjct: 12 MFVKDLILLVNDT-------AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ 56
Score = 40.8 bits (96), Expect = 3e-04
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 1 MPIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+ + P+ R G+ + +YVV G
Sbjct: 91 VGLPPLPSARCLFGLGEVDDKIYVVAGK 118
Score = 40.4 bits (95), Expect = 6e-04
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+ RS + L LY +GGF
Sbjct: 236 VMTEFPQERSSISLVSLAGSLYAIGGF 262
Score = 38.9 bits (91), Expect = 0.001
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+APM RS GVA + + GG
Sbjct: 189 DLAPMKTPRSMFGVAIHKGKIVIAGGV 215
Score = 37.7 bits (88), Expect = 0.003
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGFY 29
+ + + V M+Y +GG
Sbjct: 141 EVKNLPIKVYGHNVISHNGMIYCLGGKT 168
Score = 35.4 bits (82), Expect = 0.021
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 1 MPIAPMLYRRSRSGVAGLGKMLYVVGGFY 29
+ R+ S + +YVVGG Y
Sbjct: 38 LTALAEQIPRNHSSIVTQQNQVYVVGGLY 66
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 221 bits (564), Expect = 3e-70
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 15/206 (7%)
Query: 137 GTCSFDGLLYACGGY---DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLY 193
G +Y GG DG CL S+ YD L+ W + + + +Y
Sbjct: 93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVY 152
Query: 194 ALGGF-DSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMS 252
+GG + DP+ +W + M + RS G DG I G T S
Sbjct: 153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTS 212
Query: 253 SGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDG---------SSSLNSVEK 303
S E +++ N W P RS+ +V++ G L +GG + LN + +
Sbjct: 213 SAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWR 272
Query: 304 YDPKLNKWQLLTPMLTRRSSIGAAVL 329
Y+ + KW+ + + + GA L
Sbjct: 273 YNEEEKKWEGVLREIAYAA--GATFL 296
Score = 218 bits (557), Expect = 2e-69
Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 10/204 (4%)
Query: 137 GTCSFDGLLYACGGYDGA------SCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN 190
+ + ++ GG + ++D L W P + + R + N
Sbjct: 40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALN 99
Query: 191 CLYALGGF---DSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGG-ND 246
+Y +GG D SV D KW + V + +Y +GG
Sbjct: 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS 159
Query: 247 GTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDP 306
C++ ++ ++ W+ +APM + RS +G ++ G + +S E Y
Sbjct: 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219
Query: 307 KLNKWQLLTPMLTRRSSIGAAVLE 330
NKW RSS+ L
Sbjct: 220 TDNKWAPFEAFPQERSSLSLVSLV 243
Score = 196 bits (500), Expect = 9e-61
Identities = 46/200 (23%), Positives = 70/200 (35%), Gaps = 18/200 (9%)
Query: 141 FDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPA-MTTRRRYCRIAVVENCLYALGGFD 199
L++ YDP + + + EN ++ GG
Sbjct: 3 LQDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 200 ------STNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGG---NDGTMC 250
A + D +W +P + S R G+ +IY VGG DG C
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 251 MSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGG-NDGSSSLNSVEKYDPKLN 309
+ S ++ W P+ H V++ + +GG LN + YDPK
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 310 KWQLLTPMLTRRSSIGAAVL 329
+W+ L PM T RS GA V
Sbjct: 176 EWKELAPMQTARSLFGATVH 195
Score = 176 bits (448), Expect = 6e-53
Identities = 39/180 (21%), Positives = 61/180 (33%), Gaps = 12/180 (6%)
Query: 129 MLPYVFAIGTCSFDGLLYACGGY-DGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAV 187
+ V+ S L+Y GG CL+ M YDP W M T R V
Sbjct: 135 LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV 194
Query: 188 VENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDG 247
+ + G T +S E KWAP + RSS + +L G +Y +GG
Sbjct: 195 HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFAT 254
Query: 248 ---------TMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSL 298
++ R+N WE + ++ + L + + +L
Sbjct: 255 LETESGELVPTELNDIWRYNEEEKKWEGVLREIAYA--AGATFLPVRLNVLRLTKMAENL 312
Score = 139 bits (353), Expect = 6e-39
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 17/153 (11%)
Query: 188 VENCLYALGGFDSTNYQASVERLDPRMGKW-APVPSMSSRRSSCGVAALDGAIYCVGG-- 244
+++ ++ + DP + S ++ + + ++ GG
Sbjct: 3 LQDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 245 ----NDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGG---NDGSSS 297
N + +F+ + W + P+ S R + + +GG DG
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 298 LNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLE 330
L+SV YD KW P+
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHM 148
Score = 40.4 bits (95), Expect = 5e-04
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 1 MPIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+ + P+ R G+ +YVVGG
Sbjct: 80 LGMPPLPSPRCLFGLGEALNSIYVVGGR 107
Score = 40.0 bits (94), Expect = 7e-04
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
P RS + L LY +GGF
Sbjct: 226 PFEAFPQERSSLSLVSLVGTLYAIGGF 252
Score = 38.1 bits (89), Expect = 0.003
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+APM RS G + V G
Sbjct: 179 ELAPMQTARSLFGATVHDGRIIVAAGV 205
Score = 37.4 bits (87), Expect = 0.005
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
P+ Y V ++YV+GG
Sbjct: 131 ESDPLPYVVYGHTVLSHMDLVYVIGGK 157
Score = 34.3 bits (79), Expect = 0.049
Identities = 3/28 (10%), Positives = 9/28 (32%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGFY 29
++ + ++V GG +
Sbjct: 28 ASLSSQVPKNHVSLVTKENQVFVAGGLF 55
Score = 29.6 bits (67), Expect = 1.4
Identities = 4/27 (14%), Positives = 7/27 (25%), Gaps = 2/27 (7%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGGF 28
+ +G L L V+
Sbjct: 282 GVLRE--IAYAAGATFLPVRLNVLRLT 306
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 128 bits (322), Expect = 3e-34
Identities = 25/201 (12%), Positives = 48/201 (23%), Gaps = 23/201 (11%)
Query: 137 GTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAM-TTRRRYCRIAVVENCLYAL 195
+ +Y G G + W++ A R A ++ LY
Sbjct: 14 TGAIDNDTVYIGLGSAGTAWYKL--DTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVF 71
Query: 196 GGFDSTN-----YQASVERLDPRMGKWAPVPS-MSSRRSSCGVAALDGAIYCVGGNDGTM 249
GG + V + +P+ W + S + +G Y GG + +
Sbjct: 72 GGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNI 131
Query: 250 CMSSGERFNVRRNSWEPIAPMLSRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLN 309
E N I + + + + +DP
Sbjct: 132 FNGYFEDLNEAGKDSTAIDKINAHYFDK-------------KAEDYFFNKFLLSFDPSTQ 178
Query: 310 KWQLLTPM-LTRRSSIGAAVL 329
+W +
Sbjct: 179 QWSYAGESPWYGTAGAAVVNK 199
Score = 120 bits (303), Expect = 1e-31
Identities = 30/202 (14%), Positives = 52/202 (25%), Gaps = 23/202 (11%)
Query: 137 GTCSFDGLLYACGGYDGASC-----LSSMERYDPLTGVWSSCPA-MTTRRRYCRIAVVEN 190
+ DG LY GG S + + +Y+P T W + V
Sbjct: 60 TSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNG 119
Query: 191 CLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMC 250
Y GG + + E L+ + +++ N +
Sbjct: 120 KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED-------YFFNKFLLS 172
Query: 251 MSSGERFNVRRNSWEPIAPM-LSRRSTHEVVNIEGYLLTMGGNDGSSS-LNSVEKY--DP 306
F+ W + VVN + G ++V +
Sbjct: 173 ------FDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTG 226
Query: 307 KLNKWQLLTPMLTRRSSIGAAV 328
KW L P+ + G
Sbjct: 227 NNLKWNKLAPVSSPDGVAGGFA 248
Score = 117 bits (294), Expect = 3e-30
Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 9/162 (5%)
Query: 174 PAMTTRRRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSM-SSRRSSCGV 232
P + A+ + +Y G T + + KW + + R
Sbjct: 4 PETPVPFKSGTGAIDNDTVYIGLGSAGTAW--YKLDTQAKDKKWTALAAFPGGPRDQATS 61
Query: 233 AALDGAIYCVGG-----NDGTMCMSSGERFNVRRNSWEPIAPML-SRRSTHEVVNIEGYL 286
A +DG +Y GG T + ++N + NSW + + H G
Sbjct: 62 AFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKA 121
Query: 287 LTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAV 328
GG + + E + + + A
Sbjct: 122 YVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163
Score = 113 bits (285), Expect = 5e-29
Identities = 27/230 (11%), Positives = 54/230 (23%), Gaps = 37/230 (16%)
Query: 124 RKPEGMLPY-VFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRY 182
K P + T +G Y GG + E + ++ +
Sbjct: 99 VKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAH--- 155
Query: 183 CRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMS-SRRSSCGVAALDGAIYC 241
Y + + + DP +W+ + V +
Sbjct: 156 ----------YFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWL 205
Query: 242 VGGNDGTMCMSS---GERFNVRRNSWEPIAPMLS--RRSTHEVVNIEGYLLTMGG----- 291
+ G + F W +AP+ S + L+ GG
Sbjct: 206 INGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKG 265
Query: 292 ------------NDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVL 329
++G S + + KW + R+ +
Sbjct: 266 SRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW 315
Score = 84.2 bits (208), Expect = 2e-18
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 9/118 (7%)
Query: 220 VPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPM-LSRRSTHE 278
+P S A + +Y G+ GT + W +A R
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKL--DTQAKDKKWTALAAFPGGPRDQAT 60
Query: 279 VVNIEGYLLTMGG-----NDGSSSLNSVEKYDPKLNKW-QLLTPMLTRRSSIGAAVLE 330
I+G L GG + N V KY+PK N W +L++ + V
Sbjct: 61 SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN 118
Score = 73.8 bits (181), Expect = 6e-15
Identities = 16/152 (10%), Positives = 37/152 (24%), Gaps = 23/152 (15%)
Query: 137 GTCSFDGLLYACGGYDG-ASCLSSMERY--DPLTGVWSSCPAMTTRRRY--CRIAVVENC 191
+ + G ++ W+ +++ + +
Sbjct: 195 AVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254
Query: 192 LYALGG-----------------FDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAA 234
L GG + S + GKW +S R+
Sbjct: 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP 314
Query: 235 LDGAIYCVGG-NDGTMCMSSGERFNVRRNSWE 265
+ ++ +GG G ++ V+ N
Sbjct: 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346
Score = 59.2 bits (143), Expect = 4e-10
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 6/92 (6%)
Query: 132 YVFAIGTCSFDGLLYACGG-----YDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIA 186
+ G F G ++G S + + G W ++ R Y
Sbjct: 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL 313
Query: 187 VVENCLYALGGFDSTN-YQASVERLDPRMGKW 217
N L +GG + + + K
Sbjct: 314 PWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345
Score = 29.9 bits (67), Expect = 1.4
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 2 PIAPM-LYRRSRSGVAGLGKMLYVVGGF 28
+A R ++ A + LYV GG
Sbjct: 47 ALAAFPGGPRDQATSAFIDGNLYVFGGI 74
Score = 28.8 bits (64), Expect = 3.1
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 2 PIAPMLYRRSRSGVAGLGKMLYVVGG 27
+ R+ L ++GG
Sbjct: 299 KSGELSQGRAYGVSLPWNNSLLIIGG 324
Score = 28.8 bits (64), Expect = 3.2
Identities = 3/28 (10%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 2 PIAPMLY-RRSRSGVAGLGKMLYVVGGF 28
+ + + V G +++ G
Sbjct: 182 YAGESPWYGTAGAAVVNKGDKTWLINGE 209
Score = 28.4 bits (63), Expect = 4.0
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 4 APMLYRRSRSGVAGLGKMLYVVGGF 28
+ + YV GG
Sbjct: 103 SHAPMGMAGHVTFVHNGKAYVTGGV 127
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 91.6 bits (226), Expect = 2e-20
Identities = 39/229 (17%), Positives = 64/229 (27%), Gaps = 40/229 (17%)
Query: 137 GTCSFDGLLYACGG-YDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVENCLYAL 195
DG ++ GG + G + E Y P + W+S P + LY
Sbjct: 292 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML---TADKQGLYRS 348
Query: 196 GG------------FDSTNYQASVERLDPRMGKWAPVPSMSSRRSS-----CGVAAL--- 235
F + A G S R CG A +
Sbjct: 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDA 408
Query: 236 -DGAIY-CVGGNDGTMCMSSGERFNV-------RRNSWEPIAPMLSRRSTHE-VVNIEGY 285
G I G D ++ + N+ + R+ H VV +G
Sbjct: 409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS 468
Query: 286 LLTMGG------NDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAV 328
GG + S+ + + E Y P+ + + P R ++
Sbjct: 469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISL 517
Score = 81.9 bits (201), Expect = 3e-17
Identities = 35/216 (16%), Positives = 68/216 (31%), Gaps = 32/216 (14%)
Query: 142 DGLLYACGGYDGASCLSSMERYDPLTGVWSSCPAMTTRRRYCRIAVVEN-CLYALGGFDS 200
+G + GG D YD + W P M R Y A + + ++ +GG S
Sbjct: 253 NGQIVVTGGNDAKKT----SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS 308
Query: 201 TNY-QASVERLDPRMGKWAPVPSMSSRRSSC----GVAALDGAIYCVGGNDGTMCMSSG- 254
+ + E P W +P+ G+ D + G G++ +
Sbjct: 309 GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS 368
Query: 255 ----ERFNVRRNSWEPIAPMLSRRSTHEVV---------NIEGYLLTMGG------NDGS 295
+ + S R ++G +LT GG +D +
Sbjct: 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428
Query: 296 SSLNSVEKYDPKLNK--WQLLTPMLTRRSSIGAAVL 329
++ + + +P + + R+ + VL
Sbjct: 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVL 464
Score = 68.4 bits (166), Expect = 7e-13
Identities = 38/262 (14%), Positives = 77/262 (29%), Gaps = 44/262 (16%)
Query: 129 MLPYVFAIGTCSFDGLLYACGGYDG-----ASCLSSMERYDPLTGVWSSCPAMTTRRRY- 182
+ G D + G G + Y +G S + R
Sbjct: 336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA 395
Query: 183 ----CRIAVVENC-----LYALGGFDSTNYQAS-------VERLDPRMGKWAPVPSMSSR 226
C AV+ + L G D + A+ + +
Sbjct: 396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA 455
Query: 227 RS-SCGVAALDGAIYCVGG------NDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTHEV 279
R+ V DG+ + GG + + + + E + ++++ P R H +
Sbjct: 456 RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSI 515
Query: 280 VNI--EGYLLTMGGN---DGSSSLNSVEKYDP--------KLNKWQLLTPMLTRRSSIGA 326
+ +G + GG D +++ + + P L +T T+ +G
Sbjct: 516 SLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVKVGG 575
Query: 327 AVLETLN--IEKRLLVAPPAPT 346
+ + + I K L+ T
Sbjct: 576 RITISTDSSISKASLIRYGTAT 597
Score = 66.5 bits (161), Expect = 3e-12
Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 16/183 (8%)
Query: 160 MERYDPLTGVWSSCPAMTTRRRY--CRIAVVENCLYALGGFDSTNYQASVERLDPRMGKW 217
+DP TG+ S T+ I++ N + G + D W
Sbjct: 221 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK---KTSLYDSSSDSW 277
Query: 218 APVPSMSSRRSSCGVAAL-DGAIYCVGG-NDGTMCMSSGERFNVRRNSWEPIAPMLSRR- 274
P P M R A + DG ++ +GG G + +GE ++ +W +
Sbjct: 278 IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM 337
Query: 275 ---STHEVVNIEGYLLTMGGNDGS-----SSLNSVEKYDPKLNKWQLLTPMLTRRSSIGA 326
+ + + G GS S Y + + R
Sbjct: 338 LTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 397
Query: 327 AVL 329
A+
Sbjct: 398 AMC 400
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 83.3 bits (205), Expect = 1e-17
Identities = 36/207 (17%), Positives = 58/207 (28%), Gaps = 24/207 (11%)
Query: 138 TCSFDGLLYACGGYDG-ASCLSSMERYDPLTGVWSSCPAM-TTRRRYCRIAVVENCLYAL 195
T S + L GG LS +D T WS ++ TR R+ ++ + + L
Sbjct: 447 TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLIL 506
Query: 196 GGFDSTNYQASVERLDPRMGKWAPVPSM----SSRRSSCGVA---ALDGAIYCVGGNDGT 248
GG ++ + + V + S G+ I GG
Sbjct: 507 GGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ 563
Query: 249 MCMS-SGERFNVRRNSWEPI--------APMLSRRSTHEVVNIEGYLLTMGGNDGSSSL- 298
+S F + P+ R + LL +GG S
Sbjct: 564 TTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFD 623
Query: 299 --NSVEKYDPKLNKWQLLTPMLTRRSS 323
NS+ DP +
Sbjct: 624 RTNSIISLDPLSETLTSIPISRRIWED 650
Score = 47.4 bits (112), Expect = 4e-06
Identities = 19/150 (12%), Positives = 41/150 (27%), Gaps = 10/150 (6%)
Query: 182 YCRIAVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYC 241
Y +A + S L R V ++
Sbjct: 343 YVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFY 402
Query: 242 VGGNDGTMCMSSGERFNVRRNSWE------PIAPMLSRRSTHEVVNIEG---YLLTMGGN 292
+GG++ ++ + ++ + + + + R H I LL G
Sbjct: 403 MGGSNPY-RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRK 461
Query: 293 DGSSSLNSVEKYDPKLNKWQLLTPMLTRRS 322
L+ +D K +W ++ + R
Sbjct: 462 APHQGLSDNWIFDMKTREWSMIKSLSHTRF 491
Score = 37.4 bits (86), Expect = 0.006
Identities = 11/91 (12%), Positives = 24/91 (26%), Gaps = 11/91 (12%)
Query: 118 TKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLS---SMERYDPLTGVWSSCP 174
++ + + L GG + S+ DPL+ +S P
Sbjct: 583 PITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP 642
Query: 175 AMTTRRRYCR--------IAVVENCLYALGG 197
++ ++ +GG
Sbjct: 643 ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 79.6 bits (197), Expect = 3e-17
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 65 QLLRHVKLPLLARDFLMNSVESESLIKESTECQELLLEAMKYHLLPEQR 113
+L + ++L + +L V+ E L+ + C +L+ +A++ H L +
Sbjct: 226 ELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRAEN 274
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 51.1 bits (123), Expect = 1e-07
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 65 QLLRHVKLPLLARDFLMNSVESESLIKESTECQELLLEAMKYHL 108
++ + + L +L + +E L++ E++ E L
Sbjct: 218 DVMSALWVSGLDSSYLREQMLNEPLVR------EIVKECSNIPL 255
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 6e-04
Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 84/260 (32%)
Query: 65 QLLRHVKLPLLARDFLMNSVESESLIKESTECQELLLEAMKYHLLPEQRSLLTTKRTQER 124
+ +R ++ + +++E + KE E + Y E+ L T+ TQ
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINE------HSTSYTFRSEKGLLSATQFTQ-- 1733
Query: 125 KPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLS--SM-ERYDPLTGVWSSCPAMTTRRR 181
P + + +F+ L + G + + S+ E
Sbjct: 1734 ------PALTLMEKAAFE-DLKSKGLIPADATFAGHSLGE-------------------- 1766
Query: 182 YCRIAVVENCLYALGG---FDSTNYQASVERLDPRMGKWAP--VPSMSSRRSSCGVAALD 236
Y A L +L +S VE + R G VP RS+ G+ A+
Sbjct: 1767 YA--A-----LASLADVMSIESL-----VEVVFYR-GMTMQVAVPRDELGRSNYGMIAI- 1812
Query: 237 GAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTH--EVVN--IEG--YLLTMG 290
N G + S + + + + + +R+ E+VN +E Y+
Sbjct: 1813 --------NPGRVAASFSQ------EALQYVVERVGKRTGWLVEIVNYNVENQQYVA--A 1856
Query: 291 GNDGSSSLNSVEKYDPKLNK 310
G+ L +++ LN
Sbjct: 1857 GD-----LRALDTVTNVLNF 1871
Score = 35.8 bits (82), Expect = 0.026
Identities = 75/446 (16%), Positives = 119/446 (26%), Gaps = 195/446 (43%)
Query: 43 RPAVNSSCGN----YILPTAWVSVALQLLR---HVKLP-----------------LLAR- 77
RP S G+ ++PTA +A Q L+ + LP L+ +
Sbjct: 7 RPLTLSH-GSLEHVLLVPTASFFIASQ-LQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 78 -DFLMNSVESESLIKESTECQELLLEAMKY-----------H-----LLPEQRSLL---- 116
++ + VE + + ++L + H LL E + L
Sbjct: 65 LGYVSSLVEPS----KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 117 -----------TTKRTQERKPEGML--------PYVFAI----GTCS--FDGL--LYACG 149
KR ++K L + AI G F+ L LY
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT- 179
Query: 150 GYDG---------ASCLSSMER------------YDPLTGVWSSCPAMTTRRRY---CRI 185
Y A LS + R + L W P+ T + Y I
Sbjct: 180 -YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE--WLENPSNTPDKDYLLSIPI 236
Query: 186 AVVENCLYALGGFDSTNYQASVERLDPRMGKWAPVPSMSSRRSSCGVAALDGAIYCVGGN 245
+ + L +Y + + L G+ ++ S V A+ +
Sbjct: 237 SCPLIGVIQLA-----HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV-----AIAET 286
Query: 246 DGTMCMSSGERF-----------------------------NVRRNSWE-----PIAPML 271
D S E F ++ +S E P +PML
Sbjct: 287 D------SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPML 339
Query: 272 SRRSTHEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIG------ 325
S I + V+ Y K N L P ++ I
Sbjct: 340 S---------ISNL-----------TQEQVQDYVNKTNS-HL--P-AGKQVEISLVNGAK 375
Query: 326 -------AAVLETLNIEKRLLVAPPA 344
L LN+ R AP
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSG 401
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.025
Identities = 41/356 (11%), Positives = 77/356 (21%), Gaps = 154/356 (43%)
Query: 14 GVAGLGKMLYVVGGFYCQLLVFYKYPLYGRPAVNSSCGNYILPTA------WVSVA---- 63
GV G GK + C +Y + W+++
Sbjct: 157 GVLGSGK----------TWV------------ALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 64 -------LQLLRHVKLPLLARDFLMNSVESESLIKESTECQELLLEAMKYHLLPEQRSLL 116
LQ L + + ++ S S ++ Q L +K LL
Sbjct: 195 PETVLEMLQKLLY----QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLL 248
Query: 117 TTKRTQERKPEGMLPYVFAIGTCSFDGLLYACGGYDGASCLSSMERYDPLTGVWSS---- 172
+ L V ++
Sbjct: 249 -------------------V-----------------------------LLNVQNAKAWN 260
Query: 173 -----CPA-MTTR----------RRYCRIAVVENCLYALGGFDSTNYQASVERLDPRMGK 216
C +TTR I++ + L K
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH----SMTLTPDE---VKSLL----LK 309
Query: 217 WAPVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRST 276
+ R + ++ E +W+
Sbjct: 310 YLDCRPQDLPREVLTTNPR--RL--------SII---AESIRDGLATWD--------NWK 348
Query: 277 HEVVNIEGYLLTMGGNDGSSSLNSVEKYDPKLNKWQLLTPMLTRRSSIGAAVLETL 332
H VN + + SSLN +E + + +L + + I +L +
Sbjct: 349 H--VNCDKLTTII-----ESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLI 395
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.027
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 11/32 (34%)
Query: 158 SSMERYDPLTGVWSSCPAMTTRRRYCRIAVVE 189
+S++ Y S PA+ + A +E
Sbjct: 27 ASLKLYAD-----DSAPALAIK------ATME 47
Score = 31.8 bits (71), Expect = 0.15
Identities = 3/23 (13%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 204 QASVERLDPRMGKWAP--VPSMS 224
+ ++++L + +A P+++
Sbjct: 19 KQALKKLQASLKLYADDSAPALA 41
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 31.1 bits (71), Expect = 0.53
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 219 PVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNV 259
PV S R +A + +GG DG + E
Sbjct: 136 PVYSFGIRHMHPAIAPMIDRAAFIGGCDGVSGVLGAEMMGE 176
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric
dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A
{Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Length = 334
Score = 29.9 bits (68), Expect = 1.2
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 79 FLMNSVESESLIKESTECQELLLEAMKYHLLP 110
+N+ E ++ E+ L+EA+ P
Sbjct: 99 MGVNAAEVREMVTEARSRGLFLMEAIWTRFFP 130
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia
reductive methylation, structural genomics, PSI-2,
protein initiative; HET: MLY; 2.00A {Streptococcus
pneumoniae} PDB: 2ho5_A
Length = 325
Score = 30.0 bits (68), Expect = 1.2
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 79 FLMNSVESESLIKESTECQELLLEAMKYHLLP 110
+ E LI+ + + + EA + +
Sbjct: 95 AVSQPQEWFDLIQTAEKNNCFIFEAARNYHEK 126
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A
{Streptococcus agalactiae serogroup V}
Length = 329
Score = 29.5 bits (67), Expect = 1.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 79 FLMNSVESESLIKESTECQELLLEAMKYHLLP 110
F + ++ L + C L+EA K +P
Sbjct: 100 FTLTYDQANELFALAESCNLFLMEAQKSVFIP 131
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric
dihydodiol dehydrogenase, structural genomics; 2.70A
{Enterococcus faecalis}
Length = 330
Score = 29.5 bits (67), Expect = 1.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 79 FLMNSVESESLIKESTECQELLLEAMKYHLLP 110
F +N+ E+E L + E L+EA K LP
Sbjct: 100 FTLNAAEAEELFAIAQEQGVFLMEAQKSVFLP 131
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 29.6 bits (67), Expect = 1.6
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 219 PVPSMSSRRSSCGVAALDG-AIYCVGGNDGTMCMSSGERFNV 259
P S RR ++ + + Y +GG DG + + +
Sbjct: 140 PFFSFGIRRMHPAISPMIDRSAY-IGGADGVSGILGAKLIDQ 180
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 29.3 bits (66), Expect = 1.8
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 202 NYQASVERLDPRMGKWA---PVPSMSSRRSSCGVAALDGAIYC-VGGNDGTMCMSSGERF 257
N+Q + R+ P+ +RR+ AA+ G +GG D T + +G+ F
Sbjct: 136 NFQTLIATKAARIKSVIGDDPLLEFGTRRAQELDAAIWGTRAAYIGGADATSNVRAGKIF 195
Query: 258 NV 259
+
Sbjct: 196 GI 197
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A*
Length = 484
Score = 28.9 bits (64), Expect = 2.8
Identities = 10/67 (14%), Positives = 19/67 (28%)
Query: 218 APVPSMSSRRSSCGVAALDGAIYCVGGNDGTMCMSSGERFNVRRNSWEPIAPMLSRRSTH 277
+ R S A GA + GT ++ + +P+ + H
Sbjct: 188 YKLHDFGYRGVSSQETAGIGASAHLVNFKGTDTVAGLALIKKYYGTKDPVPGYSVPAAEH 247
Query: 278 EVVNIEG 284
+ G
Sbjct: 248 STITAWG 254
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 27.9 bits (63), Expect = 4.5
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 11/50 (22%)
Query: 217 WAPVPSMSSRRSS------CGVAALDGAIYCVGGNDGTMCMSSGERFNVR 260
W VP + + L G G + GE + VR
Sbjct: 330 WLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQG----NPGEGY-VR 374
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 27.9 bits (63), Expect = 6.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 231 GVAALDGAIYCVGGNDGTM 249
G A LDG I V NDG M
Sbjct: 86 GTAPLDGCILVVAANDGPM 104
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 28.0 bits (62), Expect = 6.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 231 GVAALDGAIYCVGGNDGTMC 250
G A +DGAI V DG M
Sbjct: 379 GAAQMDGAILVVAATDGPMP 398
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP
binding binding protein; HET: TLO NAP; 1.71A
{Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A*
3rc7_A* 3rc9_A*
Length = 350
Score = 27.3 bits (61), Expect = 8.8
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 53 YI-LPTA----WVSVALQLLRHVKLPLLARDFLMNSVESESLIKESTECQELLLEAMKYH 107
Y+ LP W+ AL+ +HV L + + ++E L + E LL+E +
Sbjct: 94 YVPLPAVLHAEWIDRALRAGKHV---LAEKPLTTDRPQAERLFAVARERGLLLMENFMFL 150
Query: 108 LLP 110
P
Sbjct: 151 HHP 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,309,507
Number of extensions: 307557
Number of successful extensions: 736
Number of sequences better than 10.0: 1
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 109
Length of query: 347
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 253
Effective length of database: 4,077,219
Effective search space: 1031536407
Effective search space used: 1031536407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)