Query psy11774
Match_columns 304
No_of_seqs 236 out of 2355
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 18:36:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0923|consensus 100.0 2.3E-69 5E-74 524.4 18.9 281 3-293 454-762 (902)
2 KOG0922|consensus 100.0 1.2E-68 2.7E-73 522.8 21.8 281 3-293 239-546 (674)
3 KOG0924|consensus 100.0 4.1E-66 9E-71 502.6 17.7 280 4-293 545-852 (1042)
4 KOG0925|consensus 100.0 1.9E-64 4.1E-69 477.1 18.5 286 3-302 234-560 (699)
5 COG1643 HrpA HrpA-like helicas 100.0 2.1E-60 4.4E-65 486.2 22.0 264 18-288 252-547 (845)
6 KOG0920|consensus 100.0 9.3E-61 2E-65 487.7 18.0 271 15-290 403-699 (924)
7 PRK11131 ATP-dependent RNA hel 100.0 6.8E-58 1.5E-62 482.2 24.4 265 22-295 283-575 (1294)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7.3E-57 1.6E-61 475.5 23.7 255 23-286 277-554 (1283)
9 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.1E-55 1.3E-59 450.1 19.3 222 24-252 208-432 (819)
10 KOG0926|consensus 100.0 5.4E-55 1.2E-59 430.6 16.3 195 51-252 605-801 (1172)
11 PRK11664 ATP-dependent RNA hel 100.0 1.2E-53 2.5E-58 441.1 20.1 221 24-251 211-434 (812)
12 PHA02653 RNA helicase NPH-II; 100.0 5E-38 1.1E-42 318.4 15.2 199 24-249 394-597 (675)
13 KOG0921|consensus 100.0 1E-32 2.2E-37 275.6 9.7 232 16-252 634-872 (1282)
14 PRK01172 ski2-like helicase; P 99.9 1.6E-21 3.5E-26 200.1 12.2 214 24-248 235-493 (674)
15 PRK02362 ski2-like helicase; P 99.8 1.5E-19 3.3E-24 187.2 12.5 213 24-247 242-514 (737)
16 KOG0331|consensus 99.8 2.7E-19 5.9E-24 174.8 9.5 113 22-153 338-451 (519)
17 KOG0345|consensus 99.8 6.1E-19 1.3E-23 167.8 7.0 146 4-167 233-384 (567)
18 PRK11776 ATP-dependent RNA hel 99.7 3.1E-18 6.6E-23 168.4 9.0 117 18-153 235-352 (460)
19 PRK04837 ATP-dependent RNA hel 99.7 5.5E-18 1.2E-22 164.9 9.0 112 22-152 252-364 (423)
20 KOG0330|consensus 99.7 5.5E-18 1.2E-22 158.2 7.1 117 16-151 291-408 (476)
21 PRK11192 ATP-dependent RNA hel 99.7 1.6E-17 3.5E-22 162.1 9.9 119 17-154 237-356 (434)
22 PRK01297 ATP-dependent RNA hel 99.7 1.9E-17 4.1E-22 163.6 10.0 112 21-151 331-443 (475)
23 COG0513 SrmB Superfamily II DN 99.7 1.3E-17 2.9E-22 166.1 8.8 116 16-150 264-380 (513)
24 PTZ00110 helicase; Provisional 99.7 1E-17 2.3E-22 168.0 8.2 110 24-152 376-486 (545)
25 PLN00206 DEAD-box ATP-dependen 99.7 1.5E-17 3.3E-22 166.0 9.2 111 25-153 367-478 (518)
26 PRK10590 ATP-dependent RNA hel 99.7 1.7E-17 3.7E-22 163.1 9.1 114 21-153 241-355 (456)
27 TIGR00614 recQ_fam ATP-depende 99.7 2.5E-17 5.3E-22 162.6 9.4 110 25-153 226-336 (470)
28 PRK11057 ATP-dependent DNA hel 99.7 2.4E-17 5.3E-22 167.3 9.1 112 23-153 234-346 (607)
29 PRK00254 ski2-like helicase; P 99.7 2.8E-17 6E-22 170.0 9.3 210 25-246 238-504 (720)
30 PTZ00424 helicase 45; Provisio 99.7 2.4E-17 5.2E-22 158.7 8.1 112 23-153 265-377 (401)
31 KOG0333|consensus 99.7 1.8E-17 3.8E-22 159.6 6.8 115 18-151 510-625 (673)
32 PRK04537 ATP-dependent RNA hel 99.7 4E-17 8.6E-22 164.6 9.7 113 21-152 253-366 (572)
33 PLN03137 ATP-dependent DNA hel 99.7 8.7E-17 1.9E-21 168.6 9.3 110 25-153 680-790 (1195)
34 PRK11634 ATP-dependent RNA hel 99.7 1.9E-16 4.2E-21 161.0 9.6 113 21-152 241-354 (629)
35 KOG0340|consensus 99.6 3.6E-16 7.9E-21 144.7 7.7 133 2-153 227-364 (442)
36 TIGR01389 recQ ATP-dependent D 99.6 7E-16 1.5E-20 156.3 10.5 110 25-153 224-334 (591)
37 KOG0342|consensus 99.6 4.4E-16 9.4E-21 149.2 7.8 130 3-151 306-438 (543)
38 TIGR03817 DECH_helic helicase/ 99.6 3.9E-16 8.4E-21 161.6 6.1 106 25-148 271-384 (742)
39 KOG0328|consensus 99.6 1.9E-15 4.1E-20 136.5 9.0 110 26-154 267-377 (400)
40 KOG0347|consensus 99.6 2.6E-15 5.6E-20 145.5 5.9 111 22-151 460-571 (731)
41 TIGR00580 mfd transcription-re 99.5 8.7E-15 1.9E-19 153.9 8.5 109 24-149 659-769 (926)
42 KOG0332|consensus 99.5 1.6E-14 3.4E-19 134.7 8.3 132 5-149 308-442 (477)
43 KOG0343|consensus 99.5 1E-14 2.2E-19 141.5 6.8 131 3-151 290-423 (758)
44 KOG0335|consensus 99.5 1.2E-14 2.7E-19 140.4 7.2 103 27-148 339-442 (482)
45 PRK10689 transcription-repair 99.5 1.5E-14 3.2E-19 155.1 7.2 109 24-149 808-918 (1147)
46 TIGR01587 cas3_core CRISPR-ass 99.5 4.7E-14 1E-18 134.1 9.2 105 24-149 221-335 (358)
47 PRK13767 ATP-dependent helicas 99.5 4.9E-14 1.1E-18 148.5 9.2 106 25-148 284-398 (876)
48 KOG0336|consensus 99.5 2E-14 4.3E-19 135.4 5.4 130 23-171 463-602 (629)
49 KOG0348|consensus 99.5 1.7E-13 3.6E-18 132.7 11.4 142 20-179 420-585 (708)
50 KOG0339|consensus 99.5 2.4E-14 5.1E-19 137.8 5.5 120 15-153 458-578 (731)
51 COG0514 RecQ Superfamily II DN 99.5 8.2E-14 1.8E-18 138.7 8.9 113 22-153 227-340 (590)
52 TIGR00643 recG ATP-dependent D 99.5 9.8E-14 2.1E-18 141.6 9.6 107 24-147 447-563 (630)
53 KOG0341|consensus 99.5 2.3E-14 4.9E-19 134.2 4.3 110 23-151 419-529 (610)
54 PF04408 HA2: Helicase associa 99.5 4.4E-14 9.5E-19 111.4 5.1 64 205-268 1-74 (102)
55 COG1111 MPH1 ERCC4-like helica 99.5 1E-13 2.3E-18 133.7 8.2 112 21-150 362-481 (542)
56 KOG0326|consensus 99.5 6.3E-14 1.4E-18 128.5 5.2 108 25-151 322-430 (459)
57 cd00079 HELICc Helicase superf 99.5 2.4E-13 5.1E-18 109.5 8.1 103 24-145 27-130 (131)
58 PRK10917 ATP-dependent DNA hel 99.4 1.6E-13 3.4E-18 141.3 8.5 108 24-148 470-587 (681)
59 KOG0338|consensus 99.4 8.1E-14 1.8E-18 134.2 4.3 110 23-151 424-534 (691)
60 PRK09751 putative ATP-dependen 99.4 2.8E-13 6E-18 147.1 8.4 100 25-142 244-375 (1490)
61 TIGR00631 uvrb excinuclease AB 99.4 3.5E-13 7.7E-18 137.5 8.7 112 24-149 441-552 (655)
62 PF00271 Helicase_C: Helicase 99.4 2.1E-13 4.6E-18 101.4 4.8 77 44-139 2-78 (78)
63 PRK05298 excinuclease ABC subu 99.4 8E-13 1.7E-17 135.3 9.5 112 24-149 445-556 (652)
64 KOG0344|consensus 99.4 4.6E-13 1E-17 130.9 7.3 114 21-152 383-497 (593)
65 TIGR02621 cas3_GSU0051 CRISPR- 99.4 5.6E-13 1.2E-17 137.8 7.9 129 23-176 270-418 (844)
66 smart00847 HA2 Helicase associ 99.4 2.9E-13 6.2E-18 104.3 4.0 69 205-274 1-80 (92)
67 PRK12898 secA preprotein trans 99.4 1.3E-12 2.8E-17 132.3 9.7 106 25-151 473-587 (656)
68 COG4098 comFA Superfamily II D 99.4 8.1E-13 1.8E-17 122.4 6.7 126 2-145 281-411 (441)
69 PRK13766 Hef nuclease; Provisi 99.4 9.5E-13 2.1E-17 137.3 7.5 109 23-150 363-479 (773)
70 PRK09200 preprotein translocas 99.4 2.5E-12 5.3E-17 132.7 10.1 107 24-151 427-542 (790)
71 KOG0350|consensus 99.3 7.9E-13 1.7E-17 127.2 4.5 117 17-151 421-541 (620)
72 TIGR03714 secA2 accessory Sec 99.3 5.6E-12 1.2E-16 129.2 10.5 107 23-151 422-538 (762)
73 smart00490 HELICc helicase sup 99.3 3.7E-12 8E-17 94.1 5.6 80 41-139 3-82 (82)
74 COG1202 Superfamily II helicas 99.3 6.8E-12 1.5E-16 122.7 8.0 201 22-246 437-665 (830)
75 KOG0354|consensus 99.3 7.4E-12 1.6E-16 126.7 7.2 109 22-149 410-528 (746)
76 TIGR03158 cas3_cyano CRISPR-as 99.2 1.8E-11 4E-16 116.9 8.9 87 23-136 270-357 (357)
77 PHA02558 uvsW UvsW helicase; P 99.2 1.7E-11 3.8E-16 122.1 8.3 100 24-142 343-443 (501)
78 KOG0349|consensus 99.2 1.9E-11 4E-16 116.2 6.6 107 23-147 503-612 (725)
79 PRK04914 ATP-dependent helicas 99.2 3.3E-11 7.2E-16 127.0 8.6 115 18-150 486-605 (956)
80 KOG0327|consensus 99.2 4.4E-11 9.6E-16 112.1 8.2 112 24-154 262-374 (397)
81 KOG0334|consensus 99.2 4.5E-11 9.6E-16 123.6 6.6 109 24-151 612-721 (997)
82 TIGR00963 secA preprotein tran 99.1 1.1E-10 2.4E-15 119.3 8.9 108 23-151 403-518 (745)
83 PRK12906 secA preprotein trans 99.1 1.3E-10 2.9E-15 119.6 8.6 106 24-150 439-553 (796)
84 TIGR00603 rad25 DNA repair hel 99.1 1.1E-10 2.4E-15 119.6 7.4 106 24-152 495-609 (732)
85 COG1204 Superfamily II helicas 99.1 1.2E-10 2.7E-15 120.6 7.4 216 23-247 251-526 (766)
86 PRK09694 helicase Cas3; Provis 99.1 1.6E-10 3.6E-15 121.0 8.2 95 24-139 559-663 (878)
87 KOG0351|consensus 99.1 1.7E-10 3.7E-15 121.0 7.8 115 22-155 482-597 (941)
88 KOG0921|consensus 99.1 1.3E-11 2.8E-16 125.3 -0.9 226 22-252 649-880 (1282)
89 COG1201 Lhr Lhr-like helicases 99.1 1.8E-10 3.9E-15 118.8 6.4 105 25-147 253-361 (814)
90 KOG4284|consensus 99.0 2.1E-10 4.6E-15 113.5 4.5 115 17-150 264-379 (980)
91 COG1197 Mfd Transcription-repa 99.0 4.6E-10 1E-14 118.0 6.9 109 23-149 801-912 (1139)
92 PRK12900 secA preprotein trans 99.0 5.6E-10 1.2E-14 116.2 7.4 108 24-152 597-713 (1025)
93 KOG0352|consensus 99.0 3.9E-10 8.4E-15 107.2 4.9 112 23-153 253-365 (641)
94 PRK14701 reverse gyrase; Provi 98.8 5.3E-09 1.1E-13 115.7 5.5 117 25-153 330-459 (1638)
95 COG1200 RecG RecG-like helicas 98.7 9.8E-09 2.1E-13 103.1 5.5 105 27-149 475-590 (677)
96 KOG0346|consensus 98.7 1E-08 2.2E-13 98.0 5.2 108 24-150 267-410 (569)
97 TIGR00595 priA primosomal prot 98.7 1.1E-08 2.3E-13 102.2 5.6 99 38-144 271-375 (505)
98 KOG0337|consensus 98.7 1.2E-08 2.5E-13 97.1 5.4 107 25-150 261-368 (529)
99 TIGR01054 rgy reverse gyrase. 98.6 4.2E-08 9.1E-13 106.2 6.8 78 26-108 327-412 (1171)
100 KOG0953|consensus 98.6 1.2E-07 2.7E-12 92.9 8.9 117 22-150 354-477 (700)
101 PRK13104 secA preprotein trans 98.6 1.1E-07 2.3E-12 99.1 8.6 68 23-93 442-509 (896)
102 PRK12904 preprotein translocas 98.6 7.8E-08 1.7E-12 99.8 7.5 68 23-93 428-495 (830)
103 PRK09401 reverse gyrase; Revie 98.6 6.3E-08 1.4E-12 104.8 5.6 75 26-106 329-411 (1176)
104 PRK13107 preprotein translocas 98.5 2.3E-07 4.9E-12 96.6 8.4 67 24-93 448-514 (908)
105 PRK05580 primosome assembly pr 98.5 1E-07 2.2E-12 98.3 4.9 113 31-149 432-549 (679)
106 KOG0353|consensus 98.5 3.8E-07 8.3E-12 86.0 7.4 79 27-106 319-397 (695)
107 KOG0951|consensus 98.4 2.1E-06 4.6E-11 90.8 11.9 217 25-252 546-836 (1674)
108 COG1203 CRISPR-associated heli 98.3 8.7E-07 1.9E-11 92.3 7.4 104 23-148 438-548 (733)
109 COG1205 Distinct helicase fami 98.3 2.7E-07 5.9E-12 97.1 2.8 98 25-139 306-410 (851)
110 PRK11448 hsdR type I restricti 98.3 2.1E-06 4.6E-11 92.7 8.8 105 24-148 697-813 (1123)
111 KOG4150|consensus 98.2 8E-07 1.7E-11 87.6 4.0 97 25-139 525-628 (1034)
112 KOG0950|consensus 98.2 1.4E-06 3.1E-11 90.1 5.8 113 25-151 460-612 (1008)
113 COG1061 SSL2 DNA or RNA helica 98.1 5.3E-06 1.1E-10 81.7 7.3 97 24-140 282-378 (442)
114 KOG0948|consensus 98.0 3.3E-06 7.3E-11 85.5 2.4 116 25-150 383-539 (1041)
115 PLN03142 Probable chromatin-re 97.7 7.8E-05 1.7E-09 79.8 8.2 111 24-153 486-602 (1033)
116 KOG0952|consensus 97.7 0.00016 3.4E-09 76.0 8.7 119 24-150 348-491 (1230)
117 KOG0947|consensus 97.7 6.3E-05 1.4E-09 78.2 5.6 115 25-149 567-722 (1248)
118 PRK12903 secA preprotein trans 97.6 0.00017 3.7E-09 75.2 8.5 104 24-148 425-537 (925)
119 COG0556 UvrB Helicase subunit 97.6 0.00014 3.1E-09 71.7 7.5 111 24-148 445-555 (663)
120 PRK12326 preprotein translocas 97.4 0.00038 8.2E-09 71.6 8.0 106 24-150 426-547 (764)
121 TIGR01407 dinG_rel DnaQ family 97.2 0.001 2.2E-08 70.8 7.8 120 24-146 673-811 (850)
122 KOG0329|consensus 96.9 0.00036 7.8E-09 63.2 1.1 53 80-150 302-355 (387)
123 KOG1123|consensus 96.8 0.0026 5.5E-08 62.7 6.5 105 25-152 543-655 (776)
124 PRK12899 secA preprotein trans 96.8 0.0025 5.5E-08 67.3 6.9 105 24-149 567-680 (970)
125 KOG0391|consensus 96.8 0.004 8.6E-08 66.5 7.7 115 23-153 1274-1390(1958)
126 PRK13103 secA preprotein trans 96.7 0.0025 5.3E-08 67.2 5.8 67 24-93 448-514 (913)
127 PF13307 Helicase_C_2: Helicas 96.7 0.0018 3.8E-08 55.3 3.9 119 24-146 8-147 (167)
128 PRK12901 secA preprotein trans 96.7 0.0028 6.1E-08 67.4 6.0 104 24-148 627-739 (1112)
129 COG4581 Superfamily II RNA hel 96.6 0.0012 2.5E-08 70.5 2.6 113 25-147 379-534 (1041)
130 COG4096 HsdR Type I site-speci 96.5 0.028 6E-07 58.5 11.5 133 25-176 426-574 (875)
131 KOG0385|consensus 96.5 0.01 2.3E-07 61.0 8.3 112 23-153 485-602 (971)
132 KOG0384|consensus 96.4 0.0054 1.2E-07 65.7 6.0 132 24-176 698-835 (1373)
133 KOG0392|consensus 96.3 0.01 2.2E-07 63.7 7.5 114 25-153 1340-1457(1549)
134 CHL00122 secA preprotein trans 96.3 0.012 2.5E-07 61.9 7.6 67 23-92 422-490 (870)
135 TIGR02562 cas3_yersinia CRISPR 96.2 0.016 3.5E-07 61.9 8.0 93 29-142 760-883 (1110)
136 KOG0389|consensus 96.0 0.026 5.7E-07 58.3 8.2 113 25-153 777-891 (941)
137 KOG0387|consensus 95.8 0.041 8.9E-07 57.0 8.7 114 25-153 546-661 (923)
138 KOG0949|consensus 95.8 0.02 4.4E-07 60.4 6.6 97 53-166 965-1065(1330)
139 PRK08074 bifunctional ATP-depe 95.3 0.076 1.7E-06 57.2 9.1 147 24-176 751-925 (928)
140 COG0553 HepA Superfamily II DN 94.9 0.072 1.6E-06 56.1 7.6 111 27-153 713-825 (866)
141 PRK12902 secA preprotein trans 94.7 0.11 2.4E-06 55.0 7.9 67 24-93 438-506 (939)
142 PRK05580 primosome assembly pr 94.6 0.063 1.4E-06 55.9 5.9 74 25-99 190-263 (679)
143 KOG0390|consensus 94.3 0.2 4.3E-06 52.4 8.7 110 27-151 596-708 (776)
144 TIGR00595 priA primosomal prot 94.2 0.086 1.9E-06 53.0 5.7 74 25-99 25-98 (505)
145 COG1198 PriA Primosomal protei 93.7 0.21 4.5E-06 52.2 7.6 111 27-149 485-603 (730)
146 PRK14873 primosome assembly pr 93.4 0.12 2.6E-06 53.6 5.3 74 25-99 188-262 (665)
147 TIGR00348 hsdR type I site-spe 93.4 0.21 4.6E-06 51.9 7.1 99 25-142 514-639 (667)
148 PRK07246 bifunctional ATP-depe 93.3 0.55 1.2E-05 50.0 10.2 148 24-175 646-815 (820)
149 PRK11747 dinG ATP-dependent DN 93.2 0.25 5.3E-06 51.7 7.3 122 24-146 533-671 (697)
150 KOG0388|consensus 92.6 0.54 1.2E-05 48.6 8.4 114 24-153 1043-1157(1185)
151 COG0653 SecA Preprotein transl 92.4 0.19 4.2E-06 52.7 5.2 105 23-148 427-543 (822)
152 PRK10917 ATP-dependent DNA hel 92.1 0.22 4.7E-06 51.9 5.2 75 25-99 310-388 (681)
153 COG1199 DinG Rad3-related DNA 91.9 1 2.3E-05 46.4 9.9 140 24-165 478-637 (654)
154 COG0513 SrmB Superfamily II DN 91.6 0.52 1.1E-05 47.5 7.0 68 28-99 102-179 (513)
155 PF06862 DUF1253: Protein of u 91.3 0.74 1.6E-05 45.4 7.5 84 22-109 297-385 (442)
156 KOG0347|consensus 91.0 0.5 1.1E-05 47.5 6.0 54 27-84 265-321 (731)
157 COG1110 Reverse gyrase [DNA re 90.9 0.69 1.5E-05 49.6 7.2 75 27-107 337-419 (1187)
158 KOG0331|consensus 89.5 1.5 3.2E-05 44.1 8.0 70 26-99 166-244 (519)
159 TIGR00580 mfd transcription-re 88.5 0.58 1.3E-05 50.4 4.7 75 25-99 500-578 (926)
160 PF13871 Helicase_C_4: Helicas 88.1 1.3 2.9E-05 41.0 6.2 61 69-139 54-114 (278)
161 PRK11634 ATP-dependent RNA hel 87.9 1.7 3.6E-05 45.0 7.5 72 24-99 73-154 (629)
162 TIGR00643 recG ATP-dependent D 87.9 0.67 1.5E-05 47.8 4.7 76 24-99 283-362 (630)
163 COG1110 Reverse gyrase [DNA re 87.6 0.65 1.4E-05 49.8 4.3 61 24-85 124-190 (1187)
164 COG1198 PriA Primosomal protei 87.5 0.42 9E-06 50.0 2.8 75 24-99 244-318 (730)
165 PRK11776 ATP-dependent RNA hel 87.3 1.4 2.9E-05 43.5 6.2 71 25-99 72-152 (460)
166 TIGR00604 rad3 DNA repair heli 86.5 0.88 1.9E-05 47.6 4.6 78 24-105 521-615 (705)
167 cd00268 DEADc DEAD-box helicas 86.0 3.3 7.1E-05 35.5 7.3 72 24-99 68-148 (203)
168 PRK11192 ATP-dependent RNA hel 85.3 3.3 7.2E-05 40.4 7.8 71 25-99 73-152 (434)
169 PRK10689 transcription-repair 84.6 1.7 3.6E-05 48.1 5.7 76 24-99 648-727 (1147)
170 KOG1015|consensus 83.1 1.7 3.8E-05 46.5 4.8 114 23-151 1140-1278(1567)
171 PRK04837 ATP-dependent RNA hel 82.1 7.1 0.00015 38.0 8.6 71 25-99 83-162 (423)
172 TIGR00596 rad1 DNA repair prot 81.9 1.5 3.3E-05 46.5 4.0 25 23-47 293-317 (814)
173 PRK14701 reverse gyrase; Provi 81.3 2.1 4.6E-05 48.9 5.0 61 25-85 122-187 (1638)
174 PRK04537 ATP-dependent RNA hel 80.8 4.9 0.00011 41.1 7.1 71 25-99 84-164 (572)
175 PRK10590 ATP-dependent RNA hel 80.6 7.1 0.00015 38.5 8.0 69 27-99 77-154 (456)
176 TIGR01054 rgy reverse gyrase. 77.2 3.1 6.6E-05 46.2 4.6 61 25-85 121-187 (1171)
177 PTZ00110 helicase; Provisional 76.7 7.6 0.00016 39.4 7.0 70 26-99 204-282 (545)
178 KOG0386|consensus 76.5 5.6 0.00012 42.8 6.1 114 24-153 725-841 (1157)
179 PRK13766 Hef nuclease; Provisi 76.3 6.8 0.00015 41.3 6.8 72 23-99 56-136 (773)
180 PRK01297 ATP-dependent RNA hel 75.9 9.6 0.00021 37.7 7.4 72 25-99 162-242 (475)
181 KOG0338|consensus 75.7 6.4 0.00014 39.6 5.9 72 24-99 251-332 (691)
182 KOG1000|consensus 75.4 13 0.00028 37.4 7.8 109 22-146 489-600 (689)
183 TIGR00614 recQ_fam ATP-depende 73.7 5.8 0.00012 39.3 5.2 59 25-84 51-109 (470)
184 KOG0339|consensus 72.5 13 0.00027 37.6 7.0 71 25-99 295-375 (731)
185 TIGR01389 recQ ATP-dependent D 71.3 7.7 0.00017 39.6 5.6 59 25-84 53-111 (591)
186 KOG0389|consensus 69.4 6.9 0.00015 41.2 4.6 76 21-99 444-529 (941)
187 COG1111 MPH1 ERCC4-like helica 69.1 9.5 0.00021 38.2 5.4 71 24-99 57-136 (542)
188 TIGR03117 cas_csf4 CRISPR-asso 64.2 22 0.00047 37.0 7.1 68 24-92 469-538 (636)
189 TIGR03817 DECH_helic helicase/ 63.5 15 0.00033 38.7 6.1 72 23-99 79-162 (742)
190 PTZ00424 helicase 45; Provisio 63.1 37 0.0008 32.4 8.3 74 22-99 93-175 (401)
191 PRK09401 reverse gyrase; Revie 62.4 13 0.00029 41.3 5.6 75 24-99 122-206 (1176)
192 PF10593 Z1: Z1 domain; Inter 61.2 21 0.00046 32.2 5.8 68 29-99 90-158 (239)
193 PF00270 DEAD: DEAD/DEAH box h 60.6 17 0.00038 29.6 4.8 57 24-84 43-103 (169)
194 COG4889 Predicted helicase [Ge 60.5 15 0.00032 39.6 5.0 75 52-144 501-578 (1518)
195 PRK11057 ATP-dependent DNA hel 58.7 19 0.00041 37.1 5.6 59 25-84 65-123 (607)
196 KOG0337|consensus 57.7 19 0.00041 35.5 5.0 70 26-99 91-169 (529)
197 KOG0329|consensus 56.5 31 0.00067 31.9 5.9 72 27-102 112-194 (387)
198 KOG0336|consensus 56.4 41 0.00088 33.2 7.0 70 26-99 295-372 (629)
199 TIGR02647 DNA conserved hypoth 55.3 11 0.00023 28.0 2.2 31 200-230 33-65 (77)
200 PLN00206 DEAD-box ATP-dependen 54.3 66 0.0014 32.4 8.6 72 24-99 195-275 (518)
201 KOG1016|consensus 53.2 45 0.00097 35.6 7.0 110 25-151 719-850 (1387)
202 smart00492 HELICc3 helicase su 53.1 23 0.0005 29.2 4.3 42 65-106 36-80 (141)
203 COG0514 RecQ Superfamily II DN 52.4 24 0.00053 36.2 5.1 59 25-84 57-115 (590)
204 PLN03137 ATP-dependent DNA hel 52.0 27 0.00057 38.8 5.5 59 25-84 500-560 (1195)
205 KOG0330|consensus 51.5 45 0.00097 32.6 6.4 78 18-99 122-209 (476)
206 KOG0951|consensus 48.6 66 0.0014 36.1 7.7 128 23-161 1357-1508(1674)
207 PRK09751 putative ATP-dependen 45.6 60 0.0013 37.2 7.2 71 25-99 37-129 (1490)
208 KOG1513|consensus 45.5 28 0.00061 37.1 4.2 121 71-247 852-975 (1300)
209 KOG0346|consensus 42.5 34 0.00073 34.0 4.1 56 25-84 93-153 (569)
210 PRK13767 ATP-dependent helicas 41.9 71 0.0015 34.5 6.9 56 25-84 84-154 (876)
211 TIGR02621 cas3_GSU0051 CRISPR- 41.8 56 0.0012 35.2 5.9 55 25-83 61-142 (844)
212 cd00046 DEXDc DEAD-like helica 41.7 78 0.0017 23.9 5.6 59 23-85 28-88 (144)
213 KOG0350|consensus 39.2 71 0.0015 32.3 5.8 74 26-99 216-300 (620)
214 smart00491 HELICc2 helicase su 38.7 37 0.0008 28.0 3.3 67 78-144 49-134 (142)
215 KOG0340|consensus 38.6 78 0.0017 30.7 5.8 60 21-84 70-133 (442)
216 COG1197 Mfd Transcription-repa 36.7 81 0.0018 35.0 6.3 109 24-133 642-763 (1139)
217 PHA02653 RNA helicase NPH-II; 36.5 1.1E+02 0.0025 32.0 7.2 70 24-99 221-296 (675)
218 smart00493 TOPRIM topoisomeras 35.8 97 0.0021 21.8 4.9 55 28-85 2-56 (76)
219 PRK14873 primosome assembly pr 35.5 42 0.0009 35.1 3.8 102 26-148 431-537 (665)
220 cd01027 TOPRIM_RNase_M5_like T 32.0 1E+02 0.0022 22.9 4.5 52 28-85 3-54 (81)
221 COG1733 Predicted transcriptio 31.8 30 0.00065 27.8 1.7 46 185-230 36-91 (120)
222 KOG0341|consensus 31.5 49 0.0011 32.4 3.3 77 25-105 245-345 (610)
223 PF06969 HemN_C: HemN C-termin 30.1 34 0.00073 23.8 1.6 33 196-228 31-66 (66)
224 KOG4439|consensus 29.9 88 0.0019 33.0 4.9 112 26-153 746-861 (901)
225 PRK00254 ski2-like helicase; P 29.9 1.1E+02 0.0024 32.1 6.0 69 24-99 67-143 (720)
226 KOG1002|consensus 29.6 1.2E+02 0.0025 30.9 5.6 88 49-151 661-750 (791)
227 PF01090 Ribosomal_S19e: Ribos 29.2 29 0.00064 28.8 1.2 31 199-229 93-127 (139)
228 COG1200 RecG RecG-like helicas 29.1 1.1E+02 0.0023 32.1 5.4 76 23-99 309-389 (677)
229 PF14947 HTH_45: Winged helix- 28.2 39 0.00085 24.7 1.7 33 198-230 31-66 (77)
230 COG0353 RecR Recombinational D 27.7 1.2E+02 0.0025 26.8 4.7 67 17-85 69-145 (198)
231 PRK12898 secA preprotein trans 27.4 1.5E+02 0.0033 31.0 6.3 60 25-91 144-206 (656)
232 PF13463 HTH_27: Winged helix 25.5 38 0.00082 23.4 1.1 19 199-217 31-49 (68)
233 PRK05255 hypothetical protein; 25.3 56 0.0012 28.1 2.3 49 196-249 15-64 (171)
234 KOG0701|consensus 24.8 24 0.00052 40.3 -0.0 92 28-137 295-397 (1606)
235 PF14338 Mrr_N: Mrr N-terminal 24.4 51 0.0011 24.8 1.7 31 200-230 54-88 (92)
236 PF01751 Toprim: Toprim domain 24.1 46 0.001 25.3 1.5 56 29-85 2-69 (100)
237 COG4742 Predicted transcriptio 23.8 80 0.0017 29.1 3.1 34 196-230 37-73 (260)
238 PF10007 DUF2250: Uncharacteri 23.6 96 0.0021 23.8 3.1 21 198-218 33-53 (92)
239 COG1321 TroR Mn-dependent tran 23.6 54 0.0012 27.6 1.9 32 199-230 37-72 (154)
240 PRK09333 30S ribosomal protein 23.2 63 0.0014 27.2 2.2 29 201-229 96-127 (150)
241 TIGR00963 secA preprotein tran 22.8 2.6E+02 0.0056 29.8 7.0 54 26-85 98-154 (745)
242 PRK02362 ski2-like helicase; P 22.3 1E+02 0.0022 32.4 4.1 69 24-99 66-142 (737)
243 PTZ00095 40S ribosomal protein 22.0 71 0.0015 27.4 2.3 31 199-229 118-153 (169)
244 PRK05638 threonine synthase; V 21.0 2.8E+02 0.006 27.3 6.6 33 197-229 397-437 (442)
245 PF02399 Herpes_ori_bp: Origin 20.9 2.1E+02 0.0045 30.8 5.8 107 24-149 281-387 (824)
246 PF03551 PadR: Transcriptional 20.8 61 0.0013 23.2 1.5 33 197-229 28-72 (75)
247 PF09821 AAA_assoc_C: C-termin 20.5 94 0.002 25.0 2.6 35 201-235 12-49 (120)
248 KOG3411|consensus 20.3 98 0.0021 25.5 2.6 30 199-228 96-129 (143)
249 PF01638 HxlR: HxlR-like helix 20.1 56 0.0012 24.5 1.2 38 193-230 26-73 (90)
No 1
>KOG0923|consensus
Probab=100.00 E-value=2.3e-69 Score=524.45 Aligned_cols=281 Identities=37% Similarity=0.535 Sum_probs=265.9
Q ss_pred ccccchhchhhhhhhccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC--------CCcEEEEecCCCCHHHHhhhhcCCCC
Q psy11774 3 RNYLYCWQTTFFYSTHFPCPSFPGAILCFLPGWQDIIQVSRVLSAI--------PGLLVTMAHSKLDTEVQGAIFGHPPP 74 (304)
Q Consensus 3 ~~Yl~~~~~~~~~~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~--------~~~~v~~lhs~l~~~~q~~~~~~~~~ 74 (304)
.||+.+...+++ .|..+++.||||||++|.++|+.+.+.|.+. ..+-++|+|++||.+.|.++|++.|+
T Consensus 454 AdYldAai~tVl---qIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~ 530 (902)
T KOG0923|consen 454 ADYLDAAIVTVL---QIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPP 530 (902)
T ss_pred hhHHHHHHhhhe---eeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCC
Confidence 589999999988 4445677899999999999999999888532 45899999999999999999999999
Q ss_pred CCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh-
Q psy11774 75 GMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR- 153 (304)
Q Consensus 75 g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~- 153 (304)
|.|||||||||||||+||+||.||||+|++|+..|+|++|+.+|...||||+++.||+|||||++||+||||||...|.
T Consensus 531 gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~ 610 (902)
T KOG0923|consen 531 GARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEH 610 (902)
T ss_pred CceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcCCCcccccchHHHHHHhh-cCCCccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchhhhccC
Q psy11774 154 RMAEYSLPEIFRKPLEQILLTCK-VGESLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAM 232 (304)
Q Consensus 154 ~~~~~~~pei~r~~L~~~~L~lk-~~~~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~l 232 (304)
.+.+.+.|||+|++|..++|.+| +|++ ++-.|+|| |||+.+++..||+.|+.+|||+..|.||.+|+.|++|
T Consensus 611 eLE~~t~PEIqRtnL~nvVL~LkSLGI~---Dl~~FdFm----DpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEf 683 (902)
T KOG0923|consen 611 ELEEMTVPEIQRTNLGNVVLLLKSLGIH---DLIHFDFL----DPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEF 683 (902)
T ss_pred hhccCCCcceeeccchhHHHHHHhcCcc---hhcccccC----CCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhc
Confidence 78889999999999999999999 9999 99999999 9999999999999999999999999999999999999
Q ss_pred CCchhhhHHHHHhhccCCcc-----------cCCceecCCCcHHHHHHHhcccC-------hHHHHHHHHHHhhhcchh
Q psy11774 233 PCHPKLSKALVESVIYKGNC-----------NCYGLIVPKSKREGRQDRRKPAA-------PLFQFYSSKIDETRNEKM 293 (304)
Q Consensus 233 pl~p~~~k~l~~~~~~~C~~-----------~~~~f~~p~~~~~~~~~~~~~~~-------~l~~~y~~~~~~~~~~~~ 293 (304)
|+||+++|||+.+..++|.+ ..++|++|.++...++.+++.|. .++++|++|.....|.+|
T Consensus 684 P~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~w 762 (902)
T KOG0923|consen 684 PVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQW 762 (902)
T ss_pred CCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHH
Confidence 99999999999999999996 66799999999988888877664 899999999999999998
No 2
>KOG0922|consensus
Probab=100.00 E-value=1.2e-68 Score=522.78 Aligned_cols=281 Identities=37% Similarity=0.551 Sum_probs=264.5
Q ss_pred ccccchhchhhhhhhccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC----C---CcEEEEecCCCCHHHHhhhhcCCCCC
Q psy11774 3 RNYLYCWQTTFFYSTHFPCPSFPGAILCFLPGWQDIIQVSRVLSAI----P---GLLVTMAHSKLDTEVQGAIFGHPPPG 75 (304)
Q Consensus 3 ~~Yl~~~~~~~~~~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~----~---~~~v~~lhs~l~~~~q~~~~~~~~~g 75 (304)
.||+.+...+++ .|..++++|||||||+|.+||+.+++.|.+. + ...++|+||+|+.++|.++|.+.|.|
T Consensus 239 ~dYv~a~~~tv~---~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g 315 (674)
T KOG0922|consen 239 ADYVDAALITVI---QIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPG 315 (674)
T ss_pred hhhHHHHHHHHH---HHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCC
Confidence 478888877776 4445689999999999999999999999753 1 12679999999999999999999999
Q ss_pred CeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHhhh
Q psy11774 76 MRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRM 155 (304)
Q Consensus 76 ~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~~~ 155 (304)
.||||+||||||||+|||||.||||+|+.|++.|||..|+++|..+||||++|.||+|||||++||+|||||++++|+.|
T Consensus 316 ~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 316 KRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKM 395 (674)
T ss_pred cceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccccchHHHHHHhh-cCCCccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCccc-chhhhccCC
Q psy11774 156 AEYSLPEIFRKPLEQILLTCK-VGESLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTP-LGKRIAAMP 233 (304)
Q Consensus 156 ~~~~~pei~r~~L~~~~L~lk-~~~~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~-lG~~l~~lp 233 (304)
+++++|||+|++|+..+|++| +|++ +...|+|+ +||+++++..|++.|+.+||||++|.||. +|+.|+.+|
T Consensus 396 ~~~~~PEI~R~~Ls~~vL~Lkalgi~---d~l~F~f~----d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~P 468 (674)
T KOG0922|consen 396 PLQTVPEIQRVNLSSAVLQLKALGIN---DPLRFPFI----DPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELP 468 (674)
T ss_pred ccCCCCceeeechHHHHHHHHhcCCC---CcccCCCC----CCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcC
Confidence 999999999999999999999 9999 99999999 99999999999999999999999999997 999999999
Q ss_pred CchhhhHHHHHhhccCCcc----------cCCceecCCCcHHH-HHHHhcccC-------hHHHHHHHHHHhhhcchh
Q psy11774 234 CHPKLSKALVESVIYKGNC----------NCYGLIVPKSKREG-RQDRRKPAA-------PLFQFYSSKIDETRNEKM 293 (304)
Q Consensus 234 l~p~~~k~l~~~~~~~C~~----------~~~~f~~p~~~~~~-~~~~~~~~~-------~l~~~y~~~~~~~~~~~~ 293 (304)
++|.++|||+.|..+||++ ++++|..|.+.+.+ ++..|.+|+ +|+++|.+|.....+++|
T Consensus 469 l~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~w 546 (674)
T KOG0922|consen 469 LEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKW 546 (674)
T ss_pred CCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhH
Confidence 9999999999999999998 88999999998877 777777776 999999999999988888
No 3
>KOG0924|consensus
Probab=100.00 E-value=4.1e-66 Score=502.60 Aligned_cols=280 Identities=31% Similarity=0.483 Sum_probs=259.5
Q ss_pred cccchhchhhhhhhccCCCCCCCcEEEEcCCHHHHHHHHHHHhc-------CC--CcEEEEecCCCCHHHHhhhhcCCCC
Q psy11774 4 NYLYCWQTTFFYSTHFPCPSFPGAILCFLPGWQDIIQVSRVLSA-------IP--GLLVTMAHSKLDTEVQGAIFGHPPP 74 (304)
Q Consensus 4 ~Yl~~~~~~~~~~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~-------~~--~~~v~~lhs~l~~~~q~~~~~~~~~ 74 (304)
||+.+.....+ .|.....+|+||||++|.++|+-.+..|.+ .+ ++.|+|+||.||.+-|.++|++.+.
T Consensus 545 DYVeaavkq~v---~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~ 621 (1042)
T KOG0924|consen 545 DYVEAAVKQAV---QIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEG 621 (1042)
T ss_pred HHHHHHHhhhe---EeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCC
Confidence 45544433333 333456789999999999999998887743 23 6999999999999999999999999
Q ss_pred CCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh-
Q psy11774 75 GMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR- 153 (304)
Q Consensus 75 g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~- 153 (304)
|.|||||||||||||+|||+|.||||||++|.++|++..|+..|...|||+|++.||+|||||++||.||||||+..|.
T Consensus 622 ~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~ 701 (1042)
T KOG0924|consen 622 GVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKN 701 (1042)
T ss_pred CceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhcCCCcccccchHHHHHHhh-cCCCccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchhhhccC
Q psy11774 154 RMAEYSLPEIFRKPLEQILLTCK-VGESLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAM 232 (304)
Q Consensus 154 ~~~~~~~pei~r~~L~~~~L~lk-~~~~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~l 232 (304)
.|.+.++|||+|++|..++|.+| +|+. ++..|+|+ |||+.+.+..|+..|..+||||+.|.||++|+.|++|
T Consensus 702 eml~stvPEIqRTNl~nvVLlLkslgV~---dll~FdFm----D~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~Mvef 774 (1042)
T KOG0924|consen 702 EMLPSTVPEIQRTNLSNVVLLLKSLGVD---DLLKFDFM----DPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEF 774 (1042)
T ss_pred hcccCCCchhhhcchhhHHHHHHhcChh---hhhCCCcC----CCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhC
Confidence 89999999999999999999999 9998 89999999 9999999999999999999999999999999999999
Q ss_pred CCchhhhHHHHHhhccCCcc----------cCCceecCCCcHHHHHHHhcccC-------hHHHHHHHHHHhhhcchh
Q psy11774 233 PCHPKLSKALVESVIYKGNC----------NCYGLIVPKSKREGRQDRRKPAA-------PLFQFYSSKIDETRNEKM 293 (304)
Q Consensus 233 pl~p~~~k~l~~~~~~~C~~----------~~~~f~~p~~~~~~~~~~~~~~~-------~l~~~y~~~~~~~~~~~~ 293 (304)
||||.++|||+.|+.+||.+ +...|++|.+..++++++|.+|+ +|||+|++|.....++.|
T Consensus 775 pLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~W 852 (1042)
T KOG0924|consen 775 PLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMW 852 (1042)
T ss_pred CCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhh
Confidence 99999999999999999998 78899999999999999998876 999999999888777766
No 4
>KOG0925|consensus
Probab=100.00 E-value=1.9e-64 Score=477.09 Aligned_cols=286 Identities=33% Similarity=0.516 Sum_probs=262.7
Q ss_pred ccccchhchhhhhhhccCCCCCCCcEEEEcCCHHHHHHHHHHHhc--------CCCcEEEEecCCCCHHHHhhhhcCCCC
Q psy11774 3 RNYLYCWQTTFFYSTHFPCPSFPGAILCFLPGWQDIIQVSRVLSA--------IPGLLVTMAHSKLDTEVQGAIFGHPPP 74 (304)
Q Consensus 3 ~~Yl~~~~~~~~~~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~--------~~~~~v~~lhs~l~~~~q~~~~~~~~~ 74 (304)
+||+.+..-+++ .+|. .+.+|||||||+|.+||+.+|+.+.. .+.++|+||| +.+|.++|++.+.
T Consensus 234 rDylEaairtV~-qih~--~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~ 306 (699)
T KOG0925|consen 234 RDYLEAAIRTVL-QIHM--CEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPE 306 (699)
T ss_pred hhHHHHHHHHHH-HHHh--ccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCc
Confidence 689999888888 3443 45699999999999999999999852 2568999999 7788899998654
Q ss_pred C-----CeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCH
Q psy11774 75 G-----MRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSE 149 (304)
Q Consensus 75 g-----~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~ 149 (304)
. .|||||+|||||+|+||++|.||||.|+.|+++|||+.+++++...||||++|.||+|||||++||+||||||+
T Consensus 307 ~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte 386 (699)
T KOG0925|consen 307 KRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTE 386 (699)
T ss_pred ccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecH
Confidence 2 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-hhhhcCCCcccccchHHHHHHhh-cCCCccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchh
Q psy11774 150 DRYR-RMAEYSLPEIFRKPLEQILLTCK-VGESLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGK 227 (304)
Q Consensus 150 ~~~~-~~~~~~~pei~r~~L~~~~L~lk-~~~~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~ 227 (304)
+.|. ++.+.+.|||++++|++++|++| +|+. +...|+|+ +||.++++.+|++.|..++|+|+||+||++|.
T Consensus 387 ~~~~~em~~~typeilrsNL~s~VL~LKklgI~---dlvhfdfm----DpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~ 459 (699)
T KOG0925|consen 387 EAFEKEMQPQTYPEILRSNLSSTVLQLKKLGID---DLVHFDFM----DPPAPETLMRALEVLNYLAALDDDGNLTSLGE 459 (699)
T ss_pred HhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcc---cccCCcCC----CCCChHHHHHHHHHhhhhhhhCCCcccchhhh
Confidence 9999 89999999999999999999999 9999 99999999 99999999999999999999999999999999
Q ss_pred hhccCCCchhhhHHHHHhhccCCcc----------cCCceecCC-CcHHHHHHHhcccC-------hHHHHHHHHHHhhh
Q psy11774 228 RIAAMPCHPKLSKALVESVIYKGNC----------NCYGLIVPK-SKREGRQDRRKPAA-------PLFQFYSSKIDETR 289 (304)
Q Consensus 228 ~l~~lpl~p~~~k~l~~~~~~~C~~----------~~~~f~~p~-~~~~~~~~~~~~~~-------~l~~~y~~~~~~~~ 289 (304)
.|++||+||+++|||+.|++|.|++ +.+.|++|. +++++|+.+++.|+ +|+|+|.+|.+...
T Consensus 460 imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~ 539 (699)
T KOG0925|consen 460 IMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNE 539 (699)
T ss_pred hhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCC
Confidence 9999999999999999999999998 888999999 77888888888887 99999999999888
Q ss_pred cchh--------hhhHHHHHh
Q psy11774 290 NEKM--------REEDEEEKR 302 (304)
Q Consensus 290 ~~~~--------~~~~~~~~~ 302 (304)
..+| |..+.|-..
T Consensus 540 ~~~WC~~~flN~ral~~Ad~v 560 (699)
T KOG0925|consen 540 DPNWCYDNFLNYRALKSADNV 560 (699)
T ss_pred ChhHHHHhcccHHHHHhHHHH
Confidence 8887 555555443
No 5
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-60 Score=486.21 Aligned_cols=264 Identities=35% Similarity=0.538 Sum_probs=242.9
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhc--C-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCC
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSA--I-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD 94 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~--~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~ 94 (304)
++...+.+|+|||||||.+||+.+++.|++ . ..+.|+||||.|+.++|.++|++.+.|+||||+|||||||||||||
T Consensus 252 ~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~g 331 (845)
T COG1643 252 DIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPG 331 (845)
T ss_pred HHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCC
Confidence 555667799999999999999999999987 3 3589999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHhhhhhcCCCcccccchHHHHHH
Q psy11774 95 VAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRMAEYSLPEIFRKPLEQILLT 174 (304)
Q Consensus 95 V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~~~~~~~~pei~r~~L~~~~L~ 174 (304)
|+||||+|+.|++.||+.+|+..|.+.|||||++.||+|||||++||+|||||++++|..+++++.|||+|+||+.++|+
T Consensus 332 Ir~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~ 411 (845)
T COG1643 332 IRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQ 411 (845)
T ss_pred eEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-cCC-CccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHhhccCCcc
Q psy11774 175 CK-VGE-SLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESVIYKGNC 252 (304)
Q Consensus 175 lk-~~~-~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~~ 252 (304)
+| +|+ . +...|+|+ |||+..++..|++.|+.+||||.+|.||++|+.|+.||+||++|+||+.|..++|++
T Consensus 412 l~~~G~~~---d~~~f~fl----d~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~ 484 (845)
T COG1643 412 LKSLGIGQ---DIAPFPFL----DPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLG 484 (845)
T ss_pred HHhcCCCC---CcccCccC----CCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHH
Confidence 99 998 5 67889999 999999999999999999999999999999999999999999999999999999988
Q ss_pred ----------cCC---ceecCCCcHH---HHHHHh-c--c--------cChHHHHHHHHHHhh
Q psy11774 253 ----------NCY---GLIVPKSKRE---GRQDRR-K--P--------AAPLFQFYSSKIDET 288 (304)
Q Consensus 253 ----------~~~---~f~~p~~~~~---~~~~~~-~--~--------~~~l~~~y~~~~~~~ 288 (304)
.++ .|..+.+.+. +.+.++ . . +..+++.|.+|....
T Consensus 485 e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~ 547 (845)
T COG1643 485 EAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARK 547 (845)
T ss_pred HHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhh
Confidence 445 5888877666 333333 1 1 127899999997766
No 6
>KOG0920|consensus
Probab=100.00 E-value=9.3e-61 Score=487.68 Aligned_cols=271 Identities=38% Similarity=0.653 Sum_probs=254.2
Q ss_pred hhhccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC------CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecccccc
Q psy11774 15 YSTHFPCPSFPGAILCFLPGWQDIIQVSRVLSAI------PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAET 88 (304)
Q Consensus 15 ~~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~------~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~ 88 (304)
+..||...+..|.|||||||+++|..+.+.|+.. ..+.++|+||.|+.++|+.+|..++.|.||||+||||||+
T Consensus 403 li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAET 482 (924)
T KOG0920|consen 403 LIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAET 482 (924)
T ss_pred HHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhh
Confidence 3467777888999999999999999999999742 2489999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHhhhhh-cCCCcccccc
Q psy11774 89 SITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRMAE-YSLPEIFRKP 167 (304)
Q Consensus 89 sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~~~~~-~~~pei~r~~ 167 (304)
|||||||.||||||+.|++.||+..+++++...|+||+++.||+|||||+++|+||+||++..|+.+.. +++|||+|.+
T Consensus 483 SITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~p 562 (924)
T KOG0920|consen 483 SITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTP 562 (924)
T ss_pred cccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhCh
Confidence 999999999999999999999999999999999999999999999999999999999999999996666 9999999999
Q ss_pred hHHHHHHhh-cCCCccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHhh
Q psy11774 168 LEQILLTCK-VGESLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESV 246 (304)
Q Consensus 168 L~~~~L~lk-~~~~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~~ 246 (304)
|+++||++| ++.. . ..+||+++++||+.+++..|++.|..+||+|.+++||+||++++.||+||++|||++.|.
T Consensus 563 L~~l~L~iK~l~~~---~--~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~ 637 (924)
T KOG0920|consen 563 LEELCLHIKVLEQG---S--IKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGA 637 (924)
T ss_pred HHHhhheeeeccCC---C--HHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehh
Confidence 999999999 7776 3 349999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcc----------cCCceecCCCcHHHHHHHhcccC--------hHHHHHHHHHHhhhc
Q psy11774 247 IYKGNC----------NCYGLIVPKSKREGRQDRRKPAA--------PLFQFYSSKIDETRN 290 (304)
Q Consensus 247 ~~~C~~----------~~~~f~~p~~~~~~~~~~~~~~~--------~l~~~y~~~~~~~~~ 290 (304)
.|+|+| .++||+.|.++++.++++++.++ .+++.|..|.+...+
T Consensus 638 if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~ 699 (924)
T KOG0920|consen 638 IFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRS 699 (924)
T ss_pred hccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc
Confidence 999999 78999999999999999887765 678888888888777
No 7
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6.8e-58 Score=482.15 Aligned_cols=265 Identities=28% Similarity=0.465 Sum_probs=242.9
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEE
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV 99 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VI 99 (304)
...+|+||||+||.++|+.+++.|++. +.+.|++|||++++++|.++|++ .|.+||||||||||+|||||+|+|||
T Consensus 283 ~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 283 REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEE
Confidence 456899999999999999999999865 34679999999999999999986 57899999999999999999999999
Q ss_pred eCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHhhhhhcCCCcccccchHHHHHHhh-cC
Q psy11774 100 DTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRMAEYSLPEIFRKPLEQILLTCK-VG 178 (304)
Q Consensus 100 D~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~~~~~~~~pei~r~~L~~~~L~lk-~~ 178 (304)
|+|++|.+.||+.++++.+...|||+++|.||+|||||+++|+||+|||+++|..+++++.|||+|++|+.++|++| +|
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lg 440 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALG 440 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccC-----CCcccchhhhccCCCchhhhHHHHHhhccCCcc-
Q psy11774 179 ESLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQE-----ENLTPLGKRIAAMPCHPKLSKALVESVIYKGNC- 252 (304)
Q Consensus 179 ~~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~-----~~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~~- 252 (304)
.. +...|+|+ +||+.+++..|++.|+.+||||.+ ++||++|+.|++||+||++||||+.|+.|+|++
T Consensus 441 l~---di~~F~fl----dpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~e 513 (1294)
T PRK11131 441 LG---DIAAFPFV----EAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVRE 513 (1294)
T ss_pred CC---CcceeeCC----CCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHH
Confidence 98 88889988 999999999999999999999864 579999999999999999999999999999999
Q ss_pred ---------cCCceecCCCcHHHHHHHhcccC-------hHHHHHHHHHH---hhhcchhhh
Q psy11774 253 ---------NCYGLIVPKSKREGRQDRRKPAA-------PLFQFYSSKID---ETRNEKMRE 295 (304)
Q Consensus 253 ---------~~~~f~~p~~~~~~~~~~~~~~~-------~l~~~y~~~~~---~~~~~~~~~ 295 (304)
+++||..|.+++++++.+|+.|. +++|.|+.|.+ .+++++++.
T Consensus 514 vl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~ 575 (1294)
T PRK11131 514 VMIITSALSIQDPRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRR 575 (1294)
T ss_pred HHHHHHHHcCCCcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 88999999999988888888775 67777776643 344554433
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.3e-57 Score=475.54 Aligned_cols=255 Identities=31% Similarity=0.486 Sum_probs=238.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
..+|+|||||||.++|+.+++.|++. +.+.++||||+|++++|.++|+++ +.+||||||||||||||||+|+||||
T Consensus 277 ~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 277 EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEe
Confidence 35799999999999999999999864 357899999999999999999864 35899999999999999999999999
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHhhhhhcCCCcccccchHHHHHHhh-cCC
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRMAEYSLPEIFRKPLEQILLTCK-VGE 179 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~~~~~~~~pei~r~~L~~~~L~lk-~~~ 179 (304)
+|++|.+.||+.++++.+...|||+++|.||+|||||+++|+||+|||+++|+.+++++.|||+|++|+.++|++| +|.
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~ 434 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRL 434 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 998
Q ss_pred CccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCC---CcccchhhhccCCCchhhhHHHHHhhccCCcc----
Q psy11774 180 SLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEE---NLTPLGKRIAAMPCHPKLSKALVESVIYKGNC---- 252 (304)
Q Consensus 180 ~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~---~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~~---- 252 (304)
. +...|+|+ +||+.+++..|++.|..+||||++| +||++|+.|+.||+||++||||+.|..++|++
T Consensus 435 ~---di~~f~fl----dpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~ 507 (1283)
T TIGR01967 435 G---DIAAFPFI----EAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLI 507 (1283)
T ss_pred C---CcccccCC----CCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHH
Confidence 8 78888888 9999999999999999999999998 79999999999999999999999999999998
Q ss_pred ------cCCceecCCCcHHHHHHHhcccC-------hHHHHHHHHHH
Q psy11774 253 ------NCYGLIVPKSKREGRQDRRKPAA-------PLFQFYSSKID 286 (304)
Q Consensus 253 ------~~~~f~~p~~~~~~~~~~~~~~~-------~l~~~y~~~~~ 286 (304)
+++||..|.+.+++++.+|+.|. +++|.|+.|.+
T Consensus 508 IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~ 554 (1283)
T TIGR01967 508 IASALSIQDPRERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEE 554 (1283)
T ss_pred HHHHHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 88999999999999988887764 67777776654
No 9
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.1e-55 Score=450.12 Aligned_cols=222 Identities=34% Similarity=0.544 Sum_probs=215.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
.+|+||||+||.++|+.+++.|++. .++.+++|||+|++++|.++|+.+++|++||||||||||+|||||||+||||+
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~ 287 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDS 287 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEc
Confidence 4799999999999999999999863 46899999999999999999999999999999999999999999999999999
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHhhhhhcCCCcccccchHHHHHHhh-cCCC
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRMAEYSLPEIFRKPLEQILLTCK-VGES 180 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~~~~~~~~pei~r~~L~~~~L~lk-~~~~ 180 (304)
|+++.+.||+.++++.|.+.||||++|.||+|||||+++|+||+||++++|..+.+++.|||++.+|+.++|++| +|..
T Consensus 288 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~ 367 (819)
T TIGR01970 288 GLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAK 367 (819)
T ss_pred CcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9988
Q ss_pred ccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHhhccCCcc
Q psy11774 181 LYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESVIYKGNC 252 (304)
Q Consensus 181 ~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~~ 252 (304)
+...|+|+ +||+.+++..|++.|+.+||||++|+||++|+.|+.||+||++||||+.|..++|.+
T Consensus 368 ---~~~~~~~l----~~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~ 432 (819)
T TIGR01970 368 ---DPSDLRWL----DAPPSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAA 432 (819)
T ss_pred ---ChhhCCCC----CCcCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHH
Confidence 77788888 999999999999999999999999999999999999999999999999999999987
No 10
>KOG0926|consensus
Probab=100.00 E-value=5.4e-55 Score=430.61 Aligned_cols=195 Identities=42% Similarity=0.624 Sum_probs=191.8
Q ss_pred cEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhh
Q psy11774 51 LLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQ 130 (304)
Q Consensus 51 ~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~Q 130 (304)
+.|+||||-|+.+.|.++|...+.|.|-||||||+||||+|||+|+||||||+.|+..||..+|++++...|||||++.|
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCccceeccCHHHHh-hhhhcCCCcccccchHHHHHHhh-cCCCccCCcccccccccCCCCCCHHHHHHHHH
Q psy11774 131 RAGRAGRTKPGESFHLYSEDRYR-RMAEYSLPEIFRKPLEQILLTCK-VGESLYSTERCSSFLSQLPEPPDPASITSAAT 208 (304)
Q Consensus 131 R~GRaGR~~~G~c~rL~t~~~~~-~~~~~~~pei~r~~L~~~~L~lk-~~~~~~~~~~~~~fl~~~~~pP~~~~l~~al~ 208 (304)
|+|||||++||+|||||+...|+ .+.+++.|||++.|.++++|++| ++++ +...|+|. +||...++..|.+
T Consensus 685 RAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~---kVvnFPFP----tpPd~~~L~~Aer 757 (1172)
T KOG0926|consen 685 RAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNID---KVVNFPFP----TPPDRSALEKAER 757 (1172)
T ss_pred hccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCcc---ceecCCCC----CCccHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999 9999 88888888 9999999999999
Q ss_pred HHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHhhccCCcc
Q psy11774 209 ELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESVIYKGNC 252 (304)
Q Consensus 209 ~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~~ 252 (304)
.|..+||||.+|.||+||+.|+.||+.|++||||+.+.+.+|+.
T Consensus 758 ~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lp 801 (1172)
T KOG0926|consen 758 RLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLP 801 (1172)
T ss_pred HHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchh
Confidence 99999999999999999999999999999999999999999988
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.2e-53 Score=441.10 Aligned_cols=221 Identities=37% Similarity=0.530 Sum_probs=213.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
..|+||||+||.++|+.+++.|++. .++.+.+|||++++++|.++++.+++|++||||||||||+|||||+|+||||+
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~ 290 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDS 290 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEEC
Confidence 4799999999999999999999862 35899999999999999999999999999999999999999999999999999
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHhhhhhcCCCcccccchHHHHHHhh-cCCC
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRMAEYSLPEIFRKPLEQILLTCK-VGES 180 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~~~~~~~~pei~r~~L~~~~L~lk-~~~~ 180 (304)
|++|.+.||+.+|++.|.+.||||++|.||+|||||+++|+||+||++++|..+++++.|||++++|+.++|.+| +|..
T Consensus 291 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~ 370 (812)
T PRK11664 291 GLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCH 370 (812)
T ss_pred CCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9988
Q ss_pred ccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHhhccCCc
Q psy11774 181 LYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESVIYKGN 251 (304)
Q Consensus 181 ~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~ 251 (304)
+...|+|| +||+..++.+|++.|+.+||||++|+||++|+.|+.||++|++||||+.|..++|.
T Consensus 371 ---~~~~~~~l----d~P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~ 434 (812)
T PRK11664 371 ---DPAQLSWL----DQPPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEA 434 (812)
T ss_pred ---CHHhCCCC----CCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCch
Confidence 77788888 99999999999999999999999999999999999999999999999999999975
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5e-38 Score=318.39 Aligned_cols=199 Identities=19% Similarity=0.237 Sum_probs=167.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCC-CCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHP-PPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~-~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
.+|++|||+||.++++.+++.|++. +++.+.+|||++++.++ +++.+ ++|+++|||||||||||||||||++|||+
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq--~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDE--ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHH--HHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 4689999999999999999999876 35899999999998654 23333 56899999999999999999999999999
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHhhhhhcCCCcccccchHHHHHHhh-cCCC
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRMAEYSLPEIFRKPLEQILLTCK-VGES 180 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~~~~~~~~pei~r~~L~~~~L~lk-~~~~ 180 (304)
|+++.+. +..+. ..|+|+++|.||+|||||+++|.||+||+++++. +.+++..++|..++|++| ||..
T Consensus 472 G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~-----pI~ri~~~~L~~~vL~lk~~g~~ 540 (675)
T PHA02653 472 GRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK-----PIKRIDSEFLHNYILYAKYFNLT 540 (675)
T ss_pred CCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH-----HHHHHhHHHHHHHHHHHHHcCCC
Confidence 9988763 33343 5799999999999999999999999999998751 134444445899999999 9886
Q ss_pred ccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccc--hhhhccCCCchhhhHHHHHhhccC
Q psy11774 181 LYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPL--GKRIAAMPCHPKLSKALVESVIYK 249 (304)
Q Consensus 181 ~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~l--G~~l~~lpl~p~~~k~l~~~~~~~ 249 (304)
... +.|+ +||+++++.+|++.|..+||+|+ +||.| |+.|+.+ ++||++++|+...
T Consensus 541 ---~~~-~~~l----dpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~~~ 597 (675)
T PHA02653 541 ---LPE-DLFV----IPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGILA 597 (675)
T ss_pred ---Ccc-cccC----CCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccHhH
Confidence 433 2255 99999999999999999998854 89999 9999999 9999999986644
No 13
>KOG0921|consensus
Probab=99.97 E-value=1e-32 Score=275.56 Aligned_cols=232 Identities=35% Similarity=0.632 Sum_probs=217.3
Q ss_pred hhccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC------CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccC
Q psy11774 16 STHFPCPSFPGAILCFLPGWQDIIQVSRVLSAI------PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETS 89 (304)
Q Consensus 16 ~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~------~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~s 89 (304)
..||....-+|.||||+|++++|-.++.+|... ....++|+|+.+..++|.++|+..+.|..|+|++||+||++
T Consensus 634 ~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaets 713 (1282)
T KOG0921|consen 634 LNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETS 713 (1282)
T ss_pred HhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEe
Confidence 456666677899999999999999999988542 34789999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHhhhhhcCCCcccccchH
Q psy11774 90 ITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRMAEYSLPEIFRKPLE 169 (304)
Q Consensus 90 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~~~~~~~~pei~r~~L~ 169 (304)
+||+++.||||+|..+++-|-...++..+.+.|.|+-+.+||.||+||.++|.||++.+...|+.+.++-.||+.++++.
T Consensus 714 iTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plh 793 (1282)
T KOG0921|consen 714 ITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLH 793 (1282)
T ss_pred eeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-cCCCccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHhhcc
Q psy11774 170 QILLTCK-VGESLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESVIY 248 (304)
Q Consensus 170 ~~~L~lk-~~~~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~~~~ 248 (304)
+..|.+| +... +.-.|+.+++.||+..++..+-..|..++++|.++.+|++|+.++++|+.|+++||++.+..+
T Consensus 794 emalTikll~l~-----SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~ 868 (1282)
T KOG0921|consen 794 EIALTIKLLRLG-----SIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTAL 868 (1282)
T ss_pred HHHhhHHHHHhh-----hHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhh
Confidence 9999999 4433 556889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q psy11774 249 KGNC 252 (304)
Q Consensus 249 ~C~~ 252 (304)
+|.+
T Consensus 869 g~~~ 872 (1282)
T KOG0921|consen 869 GAGS 872 (1282)
T ss_pred ccch
Confidence 8877
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=99.86 E-value=1.6e-21 Score=200.10 Aligned_cols=214 Identities=21% Similarity=0.201 Sum_probs=148.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC----CC--------------------cEEEEecCCCCHHHHhhhhcCCCCCCeEE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI----PG--------------------LLVTMAHSKLDTEVQGAIFGHPPPGMRKV 79 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~----~~--------------------~~v~~lhs~l~~~~q~~~~~~~~~g~~kv 79 (304)
.++++|||+|++++++.+++.|.+. .. ..|..+||+|++++|..+++.|..|..+|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~V 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 4688999999999999999888532 01 13778999999999999999999999999
Q ss_pred EEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---Cccceec-cCHHHHh--
Q psy11774 80 VLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGESFHL-YSEDRYR-- 153 (304)
Q Consensus 80 ilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c~rL-~t~~~~~-- 153 (304)
++||+++++|+++|+..+||+ +. +.|+. ....++|.+++.||+|||||.+ .|.++.+ ++++.++
T Consensus 315 LvaT~~la~Gvnipa~~VII~-~~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~ 384 (674)
T PRK01172 315 IVATPTLAAGVNLPARLVIVR-DI---TRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAA 384 (674)
T ss_pred EEecchhhccCCCcceEEEEc-Cc---eEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHH
Confidence 999999999999999888885 21 22332 1235789999999999999976 4666655 3333232
Q ss_pred -hhh-hcCCCc---cccc-chHHHHHHhh-cCCCccCCcccccccccCC---CC-CC--HHHHHHHHHHHHHcCCcccCC
Q psy11774 154 -RMA-EYSLPE---IFRK-PLEQILLTCK-VGESLYSTERCSSFLSQLP---EP-PD--PASITSAATELKLMGVFDQEE 220 (304)
Q Consensus 154 -~~~-~~~~pe---i~r~-~L~~~~L~lk-~~~~~~~~~~~~~fl~~~~---~p-P~--~~~l~~al~~L~~lgald~~~ 220 (304)
.+- ..+.|- +... .+...+|... .|.. .+..+..+|+..++ .+ |. .+.+..|++.|...|+|+.++
T Consensus 385 ~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~-~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~ 463 (674)
T PRK01172 385 KKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLA-SSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDV 463 (674)
T ss_pred HHHHcCCCCceeecCCCcccHHHHHHHHHHhccc-CCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCC
Confidence 222 222221 1100 1111123322 2221 01224445543322 22 22 567899999999999998655
Q ss_pred --CcccchhhhccCCCchhhhHHHHHhhcc
Q psy11774 221 --NLTPLGKRIAAMPCHPKLSKALVESVIY 248 (304)
Q Consensus 221 --~lT~lG~~l~~lpl~p~~~k~l~~~~~~ 248 (304)
.+|++|+.++++|++|..++.+..+..-
T Consensus 464 ~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 493 (674)
T PRK01172 464 TLRATRLGKLTSDLYIDPESALILKSAFDH 493 (674)
T ss_pred cEeECHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence 5799999999999999999999877654
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=99.81 E-value=1.5e-19 Score=187.19 Aligned_cols=213 Identities=18% Similarity=0.204 Sum_probs=155.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCC-----------------------------------CcEEEEecCCCCHHHHhhh
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIP-----------------------------------GLLVTMAHSKLDTEVQGAI 68 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~-----------------------------------~~~v~~lhs~l~~~~q~~~ 68 (304)
.++++|||+|++++++.+++.|.... ...|..+||+|++++|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 46889999999999999888774320 0257889999999999999
Q ss_pred hcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC---cccee
Q psy11774 69 FGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP---GESFH 145 (304)
Q Consensus 69 ~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~---G~c~r 145 (304)
++.|..|..+|++||+.+++|+++|.+++||+. ...||+..+ ..|++.+++.||+|||||.+- |.|+-
T Consensus 322 e~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g-----~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii 392 (737)
T PRK02362 322 EDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAG-----MQPIPVLEYHQMAGRAGRPGLDPYGEAVL 392 (737)
T ss_pred HHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCC-----ceeCCHHHHHHHhhcCCCCCCCCCceEEE
Confidence 999999999999999999999999999999964 234775443 258899999999999999653 99998
Q ss_pred ccCHH-H----HhhhhhcCCCcccc------cchHHHHHHhh-cCCCccCCcccccccccCC-CCC------CHHHHHHH
Q psy11774 146 LYSED-R----YRRMAEYSLPEIFR------KPLEQILLTCK-VGESLYSTERCSSFLSQLP-EPP------DPASITSA 206 (304)
Q Consensus 146 L~t~~-~----~~~~~~~~~pei~r------~~L~~~~L~lk-~~~~~~~~~~~~~fl~~~~-~pP------~~~~l~~a 206 (304)
+.... . |..+-.. .|+-.. ..|...+|..- .|.. .+..+..+|+..++ ..+ -.+.+..+
T Consensus 393 ~~~~~~~~~~~~~~~l~~-~~~~i~S~l~~~~~l~~~lla~I~~~~~-~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~ 470 (737)
T PRK02362 393 LAKSYDELDELFERYIWA-DPEDVRSKLATEPALRTHVLSTIASGFA-RTRDGLLEFLEATFYATQTDDTGRLERVVDDV 470 (737)
T ss_pred EecCchhHHHHHHHHHhC-CCCceeecCCChhhHHHHHHHHHHhCcc-CCHHHHHHHHHhChHHhhccchHHHHHHHHHH
Confidence 87653 1 2222211 222111 13445555544 3321 11223344543322 111 23458899
Q ss_pred HHHHHHcCCcccCCC---cccchhhhccCCCchhhhHHHHHhhc
Q psy11774 207 ATELKLMGVFDQEEN---LTPLGKRIAAMPCHPKLSKALVESVI 247 (304)
Q Consensus 207 l~~L~~lgald~~~~---lT~lG~~l~~lpl~p~~~k~l~~~~~ 247 (304)
++.|...|+|+.++. .|++|+.++.++++|..+..+..+..
T Consensus 471 l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 471 LDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred HHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 999999999987764 89999999999999999999887754
No 16
>KOG0331|consensus
Probab=99.79 E-value=2.7e-19 Score=174.82 Aligned_cols=113 Identities=19% Similarity=0.325 Sum_probs=103.1
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
.+.+|.+|||+.++..++++...|+... +.+.++||..++++|..+++.|+.|+..|+||||+|.+|+|||||++||+
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~~-~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn- 415 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRKG-WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN- 415 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhcC-cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe-
Confidence 5678899999999999999999998765 88999999999999999999999999999999999999999999999998
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
||++.+++ .|+||.||+||.+ .|..|.+++...+.
T Consensus 416 -------ydfP~~vE----------dYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 416 -------YDFPNNVE----------DYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred -------CCCCCCHH----------HHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 88776655 5669999999965 49999999998765
No 17
>KOG0345|consensus
Probab=99.76 E-value=6.1e-19 Score=167.81 Aligned_cols=146 Identities=19% Similarity=0.279 Sum_probs=120.6
Q ss_pred cccchhchhhh-hhhccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEE
Q psy11774 4 NYLYCWQTTFF-YSTHFPCPSFPGAILCFLPGWQDIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVL 81 (304)
Q Consensus 4 ~Yl~~~~~~~~-~~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvil 81 (304)
.|++|..+..+ +++|++.+...+.++||+||++.++.....+... +...++++||.|++.+|.++++.|.+...-|++
T Consensus 233 ~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~ 312 (567)
T KOG0345|consen 233 EYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLF 312 (567)
T ss_pred eeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEE
Confidence 59999999965 4689888888899999999999999999998765 668999999999999999999999888888999
Q ss_pred eccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccc--eeccCHHHHhh-hhh
Q psy11774 82 STNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GES--FHLYSEDRYRR-MAE 157 (304)
Q Consensus 82 aTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c--~rL~t~~~~~~-~~~ 157 (304)
+||||.+|||||||++||. |||+...++ +.||+||+||.+. |.. |-+-.+++|-. |.-
T Consensus 313 ~TDVaARGlDip~iD~VvQ--------~DpP~~~~~----------FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 313 CTDVAARGLDIPGIDLVVQ--------FDPPKDPSS----------FVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred eehhhhccCCCCCceEEEe--------cCCCCChhH----------HHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 9999999999999999996 998877554 4599999888664 555 44455667764 444
Q ss_pred cCCCcccccc
Q psy11774 158 YSLPEIFRKP 167 (304)
Q Consensus 158 ~~~pei~r~~ 167 (304)
...|++.+.+
T Consensus 375 ~~~v~le~~~ 384 (567)
T KOG0345|consen 375 KGKVELERID 384 (567)
T ss_pred cCccchhhhc
Confidence 4467765543
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.74 E-value=3.1e-18 Score=168.43 Aligned_cols=117 Identities=17% Similarity=0.233 Sum_probs=102.1
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeE
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAY 97 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~ 97 (304)
++.....++.+|||++++++++.+++.|.+.+ +.+.++||++++.+|..+++.|..|..+|+|||+++++|+|||+|++
T Consensus 235 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~-~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 235 RLLLHHQPESCVVFCNTKKECQEVADALNAQG-FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHhcCCCceEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 33344557789999999999999999998865 89999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHHh
Q psy11774 98 VVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRYR 153 (304)
Q Consensus 98 VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~~ 153 (304)
||+.+++ -+..+|.||+||+||.+. |.||.+++.++..
T Consensus 314 VI~~d~p------------------~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 314 VINYELA------------------RDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred EEEecCC------------------CCHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 9984432 345678899999999874 9999999987543
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.73 E-value=5.5e-18 Score=164.94 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=100.0
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
....+.+|||+++++.++.+.+.|...+ +.+..+||++++++|.++++.|..|+.+|+||||++++|||||+|++||+
T Consensus 252 ~~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~- 329 (423)
T PRK04837 252 EEWPDRAIIFANTKHRCEEIWGHLAADG-HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN- 329 (423)
T ss_pred hcCCCeEEEEECCHHHHHHHHHHHHhCC-CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE-
Confidence 3456789999999999999999998765 88999999999999999999999999999999999999999999999998
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHH
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRY 152 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~ 152 (304)
||.+ -|.++|.||+||+||.+. |.++.++++++.
T Consensus 330 -------~d~P----------~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 330 -------YDLP----------DDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred -------eCCC----------CchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 6544 355677899999999875 999999998754
No 20
>KOG0330|consensus
Probab=99.72 E-value=5.5e-18 Score=158.24 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=104.2
Q ss_pred hhccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCe
Q psy11774 16 STHFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDV 95 (304)
Q Consensus 16 ~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V 95 (304)
++|+.+....+.++||+++....+.+.-.|+..+ +..++|||.|+++.|..+|+.|+.|.+.|++|||+|.+|+|||.|
T Consensus 291 LV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg-~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~V 369 (476)
T KOG0330|consen 291 LVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLG-FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHV 369 (476)
T ss_pred HHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcC-cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCc
Confidence 4566666677899999999999999988888876 999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHH
Q psy11774 96 AYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDR 151 (304)
Q Consensus 96 ~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~ 151 (304)
++||| ||.+. +-..|+||+||+||.+ +|+.+.|.|..+
T Consensus 370 d~VVN--------yDiP~----------~skDYIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 370 DVVVN--------YDIPT----------HSKDYIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred eEEEe--------cCCCC----------cHHHHHHHcccccccCCCcceEEEEehhh
Confidence 99998 77543 4457889999999987 599999999843
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.72 E-value=1.6e-17 Score=162.06 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=103.6
Q ss_pred hccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCee
Q psy11774 17 THFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVA 96 (304)
Q Consensus 17 ~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~ 96 (304)
.++......+.+|||++++++++.+++.|.+.+ +.+..+||++++.+|..+++.|..|..+|+|||+++++|||||+|+
T Consensus 237 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 237 CHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG-INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 344444567889999999999999999998765 8899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHHhh
Q psy11774 97 YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRYRR 154 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~~~ 154 (304)
+||+ ||. |.|...|.||+||+||.+. |.++.+++..++..
T Consensus 316 ~VI~--------~d~----------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 316 HVIN--------FDM----------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred EEEE--------ECC----------CCCHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 9998 443 3466788999999999764 99999998877653
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.72 E-value=1.9e-17 Score=163.56 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=99.6
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
.....+.+|||++++++++.+.+.|...+ +.+..+||+++.++|.++++.|..|+.+||||||++|+|||||+|++||+
T Consensus 331 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~ 409 (475)
T PRK01297 331 TQNPWERVMVFANRKDEVRRIEERLVKDG-INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN 409 (475)
T ss_pred HhcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE
Confidence 34445689999999999999999997765 78999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
.|+ |-|.++|.||+|||||.+. |.++.++++++
T Consensus 410 ~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 410 FTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred eCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 543 3477899999999999875 99999998764
No 23
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.3e-17 Score=166.09 Aligned_cols=116 Identities=21% Similarity=0.300 Sum_probs=103.2
Q ss_pred hhccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCe
Q psy11774 16 STHFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDV 95 (304)
Q Consensus 16 ~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V 95 (304)
+.+++.....+.+|||++++..++.++..|...+ +.+..|||+|++++|.++++.|.+|..+|+||||+|.+||+||+|
T Consensus 264 L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g-~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 264 LLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG-FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCC-CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 4555566667789999999999999999999877 999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHH
Q psy11774 96 AYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSED 150 (304)
Q Consensus 96 ~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~ 150 (304)
.+||| ||.+. +.+.|.||+||+||.+. |.++.+++++
T Consensus 343 ~~Vin--------yD~p~----------~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 343 SHVIN--------YDLPL----------DPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred ceeEE--------ccCCC----------CHHHheeccCccccCCCCCeEEEEeCcH
Confidence 99998 77654 44566699999999875 9999999853
No 24
>PTZ00110 helicase; Provisional
Probab=99.71 E-value=1e-17 Score=168.01 Aligned_cols=110 Identities=21% Similarity=0.334 Sum_probs=98.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
..+.+|||+++++.++.+++.|+..+ +.+..+||++++++|.++++.|..|+.+|+||||++++|||||+|++||+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g-~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--- 451 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDG-WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--- 451 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcC-CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE---
Confidence 46789999999999999999998754 78999999999999999999999999999999999999999999999998
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRY 152 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~ 152 (304)
||.+ -+.++|.||+||+||.+. |.||.++++++.
T Consensus 452 -----~d~P----------~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 452 -----FDFP----------NQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred -----eCCC----------CCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 5543 356788899999999864 999999998654
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.71 E-value=1.5e-17 Score=165.95 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=99.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
.+.+|||++++..++.+.+.|....++.+..+||++++++|.++++.|..|+.+|+|||+++++|||||+|++||+
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~---- 442 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII---- 442 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----
Confidence 4679999999999999999998665689999999999999999999999999999999999999999999999998
Q ss_pred cceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHHh
Q psy11774 105 KETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRYR 153 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~~ 153 (304)
||. |.|.++|.||+|||||.+. |.++.+++.++..
T Consensus 443 ----~d~----------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 443 ----FDM----------PNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred ----eCC----------CCCHHHHHHhccccccCCCCeEEEEEEchhHHH
Confidence 554 3467889999999999874 9999999887643
No 26
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.71 E-value=1.7e-17 Score=163.11 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=99.9
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
.......+|||++++++++.+++.|.+.+ +.+..+||++++++|.++++.|..|+.+|+|||+++++|||||+|++||+
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG-IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 33455789999999999999999998765 88999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHHh
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRYR 153 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~~ 153 (304)
||.+ .+.++|.||+||+||.+. |.|+.+++.++..
T Consensus 320 --------~~~P----------~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 320 --------YELP----------NVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred --------eCCC----------CCHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 5433 355678899999999775 9999999876543
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=2.5e-17 Score=162.62 Aligned_cols=110 Identities=22% Similarity=0.274 Sum_probs=98.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
....|||++++++++.+++.|++.+ +.+.++||+|++++|.++++.|..|..+|||||+++++|||+|+|++||+.+.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g-~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~- 303 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLG-IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL- 303 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcC-CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC-
Confidence 4456999999999999999998765 88999999999999999999999999999999999999999999999998443
Q ss_pred cceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 105 KETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
+ -|.++|.||+|||||.+ +|.|+.+|+..+..
T Consensus 304 -------P----------~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 304 -------P----------KSMESYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred -------C----------CCHHHHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 2 36678999999999987 59999999987664
No 28
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.70 E-value=2.4e-17 Score=167.34 Aligned_cols=112 Identities=19% Similarity=0.233 Sum_probs=101.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
...+..|||++++++++.+++.|.+.+ +.+.++||+|++++|.++++.|..|..+|||||+++++|||+|+|++||+
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g-~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~-- 310 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRG-ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH-- 310 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE--
Confidence 446789999999999999999998865 88999999999999999999999999999999999999999999999998
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
||. |-|.++|.||+|||||.+ +|.|+.+|+..++.
T Consensus 311 ------~d~----------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 311 ------FDI----------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred ------eCC----------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 443 336788999999999987 49999999988754
No 29
>PRK00254 ski2-like helicase; Provisional
Probab=99.70 E-value=2.8e-17 Score=170.00 Aligned_cols=210 Identities=19% Similarity=0.180 Sum_probs=144.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-----------------------C---------CcEEEEecCCCCHHHHhhhhcCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-----------------------P---------GLLVTMAHSKLDTEVQGAIFGHP 72 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-----------------------~---------~~~v~~lhs~l~~~~q~~~~~~~ 72 (304)
++.+|||++++++++.++..|.+. . ...|..+||+|++++|..+.+.|
T Consensus 238 ~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F 317 (720)
T PRK00254 238 GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAF 317 (720)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHH
Confidence 578999999999998876555210 0 12488999999999999999999
Q ss_pred CCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---CccceeccCH
Q psy11774 73 PPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGESFHLYSE 149 (304)
Q Consensus 73 ~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c~rL~t~ 149 (304)
..|..+|+|||+.++.|+++|.+++||... ..|+ ..+ ..+++.+++.||+|||||.+ .|.++-+.+.
T Consensus 318 ~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 318 REGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-NFG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-CCC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 999999999999999999999999999533 2343 111 23455688999999999953 4899988764
Q ss_pred HH----HhhhhhcCCCcccc------cchHHHHHHhh-cCCCccCCcccccccccCCC---CCC----HHHHHHHHHHHH
Q psy11774 150 DR----YRRMAEYSLPEIFR------KPLEQILLTCK-VGESLYSTERCSSFLSQLPE---PPD----PASITSAATELK 211 (304)
Q Consensus 150 ~~----~~~~~~~~~pei~r------~~L~~~~L~lk-~~~~~~~~~~~~~fl~~~~~---pP~----~~~l~~al~~L~ 211 (304)
+. ++.+.. ..||-.. +.|...++... .+.. .+..+..+|+..++- .|+ .+.+..+++.|.
T Consensus 388 ~~~~~~~~~~~~-~~pe~l~s~l~~es~l~~~ll~~i~~~~~-~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~ 465 (720)
T PRK00254 388 EEPSKLMERYIF-GKPEKLFSMLSNESAFRSQVLALITNFGV-SNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLL 465 (720)
T ss_pred cchHHHHHHHHh-CCchhhhccCCchHHHHHHHHHHHHhCCC-CCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHH
Confidence 32 332211 1122111 12333444443 2211 012234556555442 233 245778889999
Q ss_pred HcCCcccC--C--CcccchhhhccCCCchhhhHHHHHhh
Q psy11774 212 LMGVFDQE--E--NLTPLGKRIAAMPCHPKLSKALVESV 246 (304)
Q Consensus 212 ~lgald~~--~--~lT~lG~~l~~lpl~p~~~k~l~~~~ 246 (304)
..|.|+.+ + ..|++|++++.++++|.-++.+..+.
T Consensus 466 ~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l 504 (720)
T PRK00254 466 ENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAF 504 (720)
T ss_pred HCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHH
Confidence 99998643 3 46899999999999999999887665
No 30
>PTZ00424 helicase 45; Provisional
Probab=99.70 E-value=2.4e-17 Score=158.73 Aligned_cols=112 Identities=17% Similarity=0.293 Sum_probs=99.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
...+.+|||+++++.++.+++.|.+.+ +.+..+||+++.++|..+++.|..|+.+|+|||+++++|+|||++++||+
T Consensus 265 ~~~~~~ivF~~t~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~-- 341 (401)
T PTZ00424 265 LTITQAIIYCNTRRKVDYLTKKMHERD-FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN-- 341 (401)
T ss_pred cCCCeEEEEecCcHHHHHHHHHHHHCC-CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--
Confidence 345679999999999999999998764 88999999999999999999999999999999999999999999999998
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
||. |.|.+++.||+||+||.+ .|.|+.++++++.+
T Consensus 342 ------~~~----------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 342 ------YDL----------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred ------ECC----------CCCHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 442 347788899999999976 59999999988765
No 31
>KOG0333|consensus
Probab=99.70 E-value=1.8e-17 Score=159.62 Aligned_cols=115 Identities=21% Similarity=0.337 Sum_probs=102.7
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeE
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAY 97 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~ 97 (304)
.++.+....+|+||+++.+.++-+++.|++.+ +.+..|||+-++++|..+++.|+.|+..|+||||+|.+||+||||.+
T Consensus 510 eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g-~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSl 588 (673)
T KOG0333|consen 510 EILESNFDPPIIIFVNTKKGADALAKILEKAG-YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSL 588 (673)
T ss_pred HHHHhCCCCCEEEEEechhhHHHHHHHHhhcc-ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccce
Confidence 34444456789999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 98 VVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 98 VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
||| ||... |-..|.||+||+||.+. |.+..++|+++
T Consensus 589 Vin--------ydmak----------sieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 589 VIN--------YDMAK----------SIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred eee--------cchhh----------hHHHHHHHhccccccccCceeEEEeccch
Confidence 998 65432 45577899999999886 99999999876
No 32
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.70 E-value=4e-17 Score=164.61 Aligned_cols=113 Identities=19% Similarity=0.275 Sum_probs=100.3
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
.......+|||+++++.++.+++.|.+.+ +.+..+||++++.+|.++++.|..|+.+|+||||++++|||||+|++||+
T Consensus 253 ~~~~~~k~LVF~nt~~~ae~l~~~L~~~g-~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn 331 (572)
T PRK04537 253 SRSEGARTMVFVNTKAFVERVARTLERHG-YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN 331 (572)
T ss_pred hcccCCcEEEEeCCHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE
Confidence 34456789999999999999999998765 88999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRY 152 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~ 152 (304)
||. |.|.++|.||+||+||.+. |.|+.++++.+.
T Consensus 332 --------yd~----------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 332 --------YDL----------PFDAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred --------cCC----------CCCHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 543 3467788999999999765 999999887643
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.68 E-value=8.7e-17 Score=168.60 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=99.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
.+..|||+.++.+++.+++.|...+ +.+.++||+|++++|..+++.|..|+.+|||||+++++|||+|+|++||+.+++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~G-ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlP 758 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFG-HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 758 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCC-CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCC
Confidence 4678999999999999999998765 899999999999999999999999999999999999999999999999984433
Q ss_pred cceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 105 KETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
-|-++|.||+|||||.+ +|.|+.+|+..++.
T Consensus 759 ------------------kSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 759 ------------------KSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ------------------CCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 35678889999999987 59999999987765
No 34
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.66 E-value=1.9e-16 Score=161.01 Aligned_cols=113 Identities=16% Similarity=0.282 Sum_probs=100.0
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
.......+|||++++.+++.+++.|...+ +.+..+||.+++++|.++++.|..|+.+|+|||+++++|||||+|++||+
T Consensus 241 ~~~~~~~~IVF~~tk~~a~~l~~~L~~~g-~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~ 319 (629)
T PRK11634 241 EAEDFDAAIIFVRTKNATLEVAEALERNG-YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 (629)
T ss_pred HhcCCCCEEEEeccHHHHHHHHHHHHhCC-CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE
Confidence 33445789999999999999999998865 88999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRY 152 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~ 152 (304)
||.+ .+.++|.||+||+||.+. |.++.+++..+.
T Consensus 320 --------~d~P----------~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 320 --------YDIP----------MDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred --------eCCC----------CCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 6543 356788899999999875 999999887543
No 35
>KOG0340|consensus
Probab=99.64 E-value=3.6e-16 Score=144.69 Aligned_cols=133 Identities=18% Similarity=0.270 Sum_probs=110.6
Q ss_pred cccccchhchhhh-hhhccCCC---CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCe
Q psy11774 2 FRNYLYCWQTTFF-YSTHFPCP---SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMR 77 (304)
Q Consensus 2 ~~~Yl~~~~~~~~-~~~~i~~~---~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~ 77 (304)
.+.|+.|....+. ++.|++.. ++.++|++|+++..+++.+...|+... +.+..|||.|++.+|..++.+|+.+..
T Consensus 227 ~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le-~r~~~lHs~m~Q~eR~~aLsrFrs~~~ 305 (442)
T KOG0340|consen 227 YQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLE-VRVVSLHSQMPQKERLAALSRFRSNAA 305 (442)
T ss_pred hhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhc-eeeeehhhcchHHHHHHHHHHHhhcCc
Confidence 3568888888744 34565542 367999999999999999999998876 999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHHh
Q psy11774 78 KVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRYR 153 (304)
Q Consensus 78 kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~~ 153 (304)
+|++|||+|.+|+|||.|..||| ||-+. .-..|+||.||+.|.+. |..+.++++.+.+
T Consensus 306 ~iliaTDVAsRGLDIP~V~LVvN--------~diPr----------~P~~yiHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 306 RILIATDVASRGLDIPTVELVVN--------HDIPR----------DPKDYIHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred cEEEEechhhcCCCCCceeEEEe--------cCCCC----------CHHHHHHhhcchhcccCCcceEEEechhhHH
Confidence 99999999999999999999999 44332 23467799999888765 8999999876544
No 36
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.64 E-value=7e-16 Score=156.31 Aligned_cols=110 Identities=23% Similarity=0.254 Sum_probs=98.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
.+..|||++++++++.+++.|...+ +.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g-~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~---- 298 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQG-ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH---- 298 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----
Confidence 5679999999999999999998765 88999999999999999999999999999999999999999999999998
Q ss_pred cceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 105 KETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
||. |-|.++|.||+|||||.+ +|.|+.+|+..++.
T Consensus 299 ----~~~----------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 299 ----YDM----------PGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred ----cCC----------CCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 443 235678889999999987 59999999988754
No 37
>KOG0342|consensus
Probab=99.63 E-value=4.4e-16 Score=149.15 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=110.0
Q ss_pred ccccchhchhhh-hhhccCCCCCC-CcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEE
Q psy11774 3 RNYLYCWQTTFF-YSTHFPCPSFP-GAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVV 80 (304)
Q Consensus 3 ~~Yl~~~~~~~~-~~~~i~~~~~~-g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvi 80 (304)
+.|++|+..-.| ++.+++++... ..|+||+||+..+..+++.|.... +.|..+||+.++..|..++..|.+.+.-|+
T Consensus 306 Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d-lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL 384 (543)
T KOG0342|consen 306 QGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID-LPVLEIHGKQKQNKRTSTFFEFCKAESGIL 384 (543)
T ss_pred ceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC-CchhhhhcCCcccccchHHHHHhhcccceE
Confidence 358888877753 34555555444 789999999999999999998654 899999999999999999999999999999
Q ss_pred EeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 81 LSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 81 laTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
||||+|.||+|+|+|+.||. ||++++ ..+|+||.||+||.+. |..+-+..+++
T Consensus 385 ~cTDVaARGlD~P~V~~VvQ--------~~~P~d----------~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 385 VCTDVAARGLDIPDVDWVVQ--------YDPPSD----------PEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred EecchhhccCCCCCceEEEE--------eCCCCC----------HHHHHHHhccccccCCCceEEEEeChhH
Confidence 99999999999999999996 776654 5678899999999775 99988877654
No 38
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.62 E-value=3.9e-16 Score=161.55 Aligned_cols=106 Identities=23% Similarity=0.148 Sum_probs=93.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-------CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-------PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAY 97 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-------~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~ 97 (304)
...+|||+++++.++.+++.|.+. ....+..+||++++++|.++.+.|.+|+.+++||||++|+||||++|++
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDA 350 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccE
Confidence 568999999999999999987642 1357889999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccC
Q psy11774 98 VVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYS 148 (304)
Q Consensus 98 VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t 148 (304)
||+.|+ |-|.++|.||+|||||.+. |.++-+.+
T Consensus 351 VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 351 VVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred EEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 998553 3367899999999999875 99998876
No 39
>KOG0328|consensus
Probab=99.61 E-value=1.9e-15 Score=136.46 Aligned_cols=110 Identities=19% Similarity=0.326 Sum_probs=99.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCcc
Q psy11774 26 GAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHK 105 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k 105 (304)
...++|+++++.++.+.+.+++.. +.|.++||.|++++|.+++..|+.|+.+|+++||+..+|+++|.|..|||
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~n-ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----- 340 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----- 340 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhC-ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe-----
Confidence 358999999999999999998876 89999999999999999999999999999999999999999999999998
Q ss_pred ceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHHhh
Q psy11774 106 ETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRYRR 154 (304)
Q Consensus 106 ~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~~~ 154 (304)
||-+ ..++.|+||.||+||.+. |+++.+...++...
T Consensus 341 ---YDLP----------~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 341 ---YDLP----------NNRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred ---cCCC----------ccHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 7744 456788899999999775 99999999877653
No 40
>KOG0347|consensus
Probab=99.56 E-value=2.6e-15 Score=145.52 Aligned_cols=111 Identities=19% Similarity=0.283 Sum_probs=97.5
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
..-+|..|||+++.+.|.++.-.|.... +..++||+.|.+.+|.+.++.|.....-|+||||+|.||+|||+|.+||+
T Consensus 460 ~ryPGrTlVF~NsId~vKRLt~~L~~L~-i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH- 537 (731)
T KOG0347|consen 460 TRYPGRTLVFCNSIDCVKRLTVLLNNLD-IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH- 537 (731)
T ss_pred eecCCceEEEechHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE-
Confidence 4458999999999999999999998765 77899999999999999999999999999999999999999999999997
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
|..+ -+-..|+||.||+.|... |+...|+...+
T Consensus 538 -------YqVP----------rtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 538 -------YQVP----------RTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred -------eecC----------CccceeEecccccccccCCCeEEEEeChHH
Confidence 6544 344556699999999775 99998887654
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.55 E-value=8.7e-15 Score=153.90 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=95.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
..|.++||+|+.++++.+++.|++. +++.+..+||+|+++++.++++.|..|+.+|+|||+++|+|||||+|++||.
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi-- 736 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII-- 736 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--
Confidence 4678999999999999999999874 5689999999999999999999999999999999999999999999999995
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCH
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSE 149 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~ 149 (304)
+|++.- +-+++.||+||+||.+ .|.||.+++.
T Consensus 737 ------~~a~~~---------gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 737 ------ERADKF---------GLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred ------ecCCCC---------CHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 444321 2346789999999976 4999999864
No 42
>KOG0332|consensus
Probab=99.54 E-value=1.6e-14 Score=134.69 Aligned_cols=132 Identities=22% Similarity=0.272 Sum_probs=107.0
Q ss_pred ccchhchh-hh-hhhccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEe
Q psy11774 5 YLYCWQTT-FF-YSTHFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLS 82 (304)
Q Consensus 5 Yl~~~~~~-~~-~~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvila 82 (304)
|++|..-- .+ ....+.....-|..+||+-+++.+..++..+...+ ..|..|||.|..++|..+.+.|+.|+.||+++
T Consensus 308 yv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~G-h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLit 386 (477)
T KOG0332|consen 308 YVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEG-HQVSLLHGDLTVEQRAAIIDRFREGKEKVLIT 386 (477)
T ss_pred eeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcC-ceeEEeeccchhHHHHHHHHHHhcCcceEEEE
Confidence 55665443 22 11223333456889999999999999999998876 78999999999999999999999999999999
Q ss_pred ccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCH
Q psy11774 83 TNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSE 149 (304)
Q Consensus 83 Tniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~ 149 (304)
||+..|||+++.|..||| ||-+..... -..-+.|.||.||+||.+. |..|.|...
T Consensus 387 TnV~ARGiDv~qVs~VvN--------ydlP~~~~~----~pD~etYlHRiGRtGRFGkkG~a~n~v~~ 442 (477)
T KOG0332|consen 387 TNVCARGIDVAQVSVVVN--------YDLPVKYTG----EPDYETYLHRIGRTGRFGKKGLAINLVDD 442 (477)
T ss_pred echhhcccccceEEEEEe--------cCCccccCC----CCCHHHHHHHhcccccccccceEEEeecc
Confidence 999999999999999999 555543222 2467889999999999886 999998654
No 43
>KOG0343|consensus
Probab=99.53 E-value=1e-14 Score=141.52 Aligned_cols=131 Identities=16% Similarity=0.239 Sum_probs=108.7
Q ss_pred ccccchhchh-hhhhhccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEE
Q psy11774 3 RNYLYCWQTT-FFYSTHFPCPSFPGAILCFLPGWQDIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVV 80 (304)
Q Consensus 3 ~~Yl~~~~~~-~~~~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvi 80 (304)
+.|+.++... +..+.-+.++.....+|||++++.++..+++..... +++.+.+|||+|++..|..+|..|-..+.-|+
T Consensus 290 Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vL 369 (758)
T KOG0343|consen 290 QSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVL 369 (758)
T ss_pred heEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEE
Confidence 3566666555 233344556677888999999999999999999764 78999999999999999999999987777899
Q ss_pred EeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 81 LSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 81 laTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
+||||+.+|+++|-|++||. || +|..-++|+||+||+.|... |.|+.+.+...
T Consensus 370 F~TDv~aRGLDFpaVdwViQ--------~D----------CPedv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 370 FCTDVAARGLDFPAVDWVIQ--------VD----------CPEDVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred EeehhhhccCCCcccceEEE--------ec----------CchhHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 99999999999999999996 55 55666788899999999765 99998877655
No 44
>KOG0335|consensus
Probab=99.53 E-value=1.2e-14 Score=140.44 Aligned_cols=103 Identities=21% Similarity=0.309 Sum_probs=95.0
Q ss_pred cEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccc
Q psy11774 27 AILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKE 106 (304)
Q Consensus 27 ~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~ 106 (304)
.++||+.+.+.+..+...|...+ +.+.++||..++.+|.+++..|+.|+..|+||||||++|+|||+|++||+
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~~-~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn------ 411 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSNG-YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN------ 411 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcCC-CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE------
Confidence 79999999999999999998765 89999999999999999999999999999999999999999999999998
Q ss_pred eeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccC
Q psy11774 107 TRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYS 148 (304)
Q Consensus 107 ~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t 148 (304)
||-+..+. +|+||.||+||.+. |....|+.
T Consensus 412 --yDmP~d~d----------~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 412 --YDMPADID----------DYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred --eecCcchh----------hHHHhccccccCCCCceeEEEec
Confidence 88666544 56699999999986 99999987
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.51 E-value=1.5e-14 Score=155.12 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=93.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
..|.++||+|+.+.++.+++.|.+. +++.+..+||+|++++|.+++..|..|+.+|+|||+++|+|||||+|++||-
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi-- 885 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII-- 885 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE--
Confidence 3578999999999999999999875 5688999999999999999999999999999999999999999999999992
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCH
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSE 149 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~ 149 (304)
+++.+ -+-+++.||+||+||.+. |.||-+++.
T Consensus 886 ------~~ad~---------fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 886 ------ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ------ecCCC---------CCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 22111 012468899999999764 999988753
No 46
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.51 E-value=4.7e-14 Score=134.05 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=85.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCC-CcEEEEecCCCCHHHHhh----hhcCCCCCCeEEEEeccccccCCCCCCeeEE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIP-GLLVTMAHSKLDTEVQGA----IFGHPPPGMRKVVLSTNVAETSITIDDVAYV 98 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~-~~~v~~lhs~l~~~~q~~----~~~~~~~g~~kvilaTniae~sitI~~V~~V 98 (304)
.++.+|||+++.++++.+.+.|++.. ...+..+||++++.+|.+ +++.+..+..+|+|||+++|+|+||+ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 46889999999999999999997653 347999999999999866 47788889999999999999999996 7777
Q ss_pred EeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-----ccceeccCH
Q psy11774 99 VDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-----GESFHLYSE 149 (304)
Q Consensus 99 ID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-----G~c~rL~t~ 149 (304)
|. |+ .+-+++.||+||+||.+. |..|.++..
T Consensus 300 i~--------~~------------~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 300 IT--------EL------------APIDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred EE--------cC------------CCHHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 74 21 234688999999999653 356666544
No 47
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.49 E-value=4.9e-14 Score=148.46 Aligned_cols=106 Identities=26% Similarity=0.179 Sum_probs=90.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-----PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV 99 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-----~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VI 99 (304)
.+.+|||+++++.++.++..|.+. ....+..+||+++.++|..+++.+.+|..+|+|||+++|+|||||+|++||
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI 363 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVV 363 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEE
Confidence 567999999999999999999763 135799999999999999999999999999999999999999999999999
Q ss_pred eCCCccceeecCCCCcccccceecchhhhhhhccccCCCC----CccceeccC
Q psy11774 100 DTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK----PGESFHLYS 148 (304)
Q Consensus 100 D~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~----~G~c~rL~t 148 (304)
. |++ |.|.+++.||+||+||.. .|.++....
T Consensus 364 ~--------~~~----------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 364 L--------LGS----------PKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred E--------eCC----------CCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 7 433 346788999999999852 377776543
No 48
>KOG0336|consensus
Probab=99.49 E-value=2e-14 Score=135.39 Aligned_cols=130 Identities=17% Similarity=0.289 Sum_probs=105.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
.+...++||+..+.-.+.+.+-+.- .++....|||+-.+.+|..+++.++.|..+|+||||+|.+|++++||++|+|
T Consensus 463 s~ndKvIiFv~~K~~AD~LSSd~~l-~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N-- 539 (629)
T KOG0336|consen 463 SSNDKVIIFVSRKVMADHLSSDFCL-KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN-- 539 (629)
T ss_pred CCCceEEEEEechhhhhhccchhhh-cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--
Confidence 4456799999988877766655543 3488999999999999999999999999999999999999999999999998
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHHhh---------hhhcCCCcccccchHHH
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRYRR---------MAEYSLPEIFRKPLEQI 171 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~~~---------~~~~~~pei~r~~L~~~ 171 (304)
||.+.+++ +|.||.||+||.+. |..+.+++.+++.. -.++.+||-++...+..
T Consensus 540 ------yDFP~nIe----------eYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAery 602 (629)
T KOG0336|consen 540 ------YDFPRNIE----------EYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERY 602 (629)
T ss_pred ------cCCCccHH----------HHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 88776654 66699999999886 99999999887653 23556666554444443
No 49
>KOG0348|consensus
Probab=99.49 E-value=1.7e-13 Score=132.72 Aligned_cols=142 Identities=21% Similarity=0.240 Sum_probs=113.3
Q ss_pred CCCCCCCcEEEEcCCHHHHHHHHHHHhcC---------------------CCcEEEEecCCCCHHHHhhhhcCCCCCCeE
Q psy11774 20 PCPSFPGAILCFLPGWQDIIQVSRVLSAI---------------------PGLLVTMAHSKLDTEVQGAIFGHPPPGMRK 78 (304)
Q Consensus 20 ~~~~~~g~iLVFlp~~~ei~~~~~~L~~~---------------------~~~~v~~lhs~l~~~~q~~~~~~~~~g~~k 78 (304)
.+......++||+++.+.|+.=++++.+. -+++++-|||+|++++|..+|..|....+-
T Consensus 420 ~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~ 499 (708)
T KOG0348|consen 420 VKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA 499 (708)
T ss_pred hhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce
Confidence 34455567999999999999877776320 136899999999999999999999999999
Q ss_pred EEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC---ccceeccCHHHHhhh
Q psy11774 79 VVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP---GESFHLYSEDRYRRM 155 (304)
Q Consensus 79 vilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~---G~c~rL~t~~~~~~~ 155 (304)
|++|||+|.+|+|+|+|+.||. ||++ -|.+.|.||.||+.|.+. ..-|-+.++.+|...
T Consensus 500 VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P----------~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~ 561 (708)
T KOG0348|consen 500 VLLCTDVAARGLDLPHVGLVVQ--------YDPP----------FSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNY 561 (708)
T ss_pred EEEehhhhhccCCCCCcCeEEE--------eCCC----------CCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHH
Confidence 9999999999999999999996 8865 467889999998777553 455666778888876
Q ss_pred hhcCCCcccccchHHHHHHhhcCC
Q psy11774 156 AEYSLPEIFRKPLEQILLTCKVGE 179 (304)
Q Consensus 156 ~~~~~pei~r~~L~~~~L~lk~~~ 179 (304)
-....+-+..-++..++..++...
T Consensus 562 l~~~~~~l~q~~~~~~l~~~~~~~ 585 (708)
T KOG0348|consen 562 LKKHHIMLLQFDMEILLPAFKPRK 585 (708)
T ss_pred HHhhcchhhccchhhhhhhcCccc
Confidence 666666677777777766665443
No 50
>KOG0339|consensus
Probab=99.49 E-value=2.4e-14 Score=137.79 Aligned_cols=120 Identities=23% Similarity=0.340 Sum_probs=106.1
Q ss_pred hhhccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCC
Q psy11774 15 YSTHFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD 94 (304)
Q Consensus 15 ~~~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~ 94 (304)
++.|+......|++|+|++-..+.+.+...|.-.+ +.|..|||.+.+.+|.+++..|+.+...|++|||+|.+|+||++
T Consensus 458 l~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~-~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ 536 (731)
T KOG0339|consen 458 LLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG-FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPS 536 (731)
T ss_pred HHHHhhhhccCCcEEEEEeccCCHHHHHHHhcccc-ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccc
Confidence 45777777789999999999999999999986654 99999999999999999999999988899999999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHHh
Q psy11774 95 VAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRYR 153 (304)
Q Consensus 95 V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~~ 153 (304)
++.||+ ||.-..+.+ +.||.||+||.+. |+.|.|.|+.+-+
T Consensus 537 ikTVvn--------yD~ardIdt----------hthrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 537 IKTVVN--------YDFARDIDT----------HTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred cceeec--------ccccchhHH----------HHHHhhhcccccccceeeEEechhhHH
Confidence 999998 776555554 4499999999886 9999999987643
No 51
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.48 E-value=8.2e-14 Score=138.75 Aligned_cols=113 Identities=25% Similarity=0.307 Sum_probs=101.1
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
....+.-+||+.|+.+++.+++.|...+ +.+..+|++|+.++|..+.+.|..+..+|||||+....|||.|||+|||+
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g-~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH- 304 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNG-ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH- 304 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCC-CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE-
Confidence 3456778999999999999999999874 99999999999999999999999999999999999999999999999997
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
||.+ -|-++|.|-+|||||.+ |..|+-||+..+..
T Consensus 305 -------~~lP----------~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 305 -------YDLP----------GSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred -------ecCC----------CCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 6543 45667889999999987 59999999987754
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.48 E-value=9.8e-14 Score=141.64 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=89.3
Q ss_pred CCCcEEEEcCCHH--------HHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCC
Q psy11774 24 FPGAILCFLPGWQ--------DIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD 94 (304)
Q Consensus 24 ~~g~iLVFlp~~~--------ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~ 94 (304)
..+.++||+|..+ .++.+++.|.+. +++.|..+||+|++++|.++++.|..|+.+|+|||+++|+|||+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 3567999999763 455666677643 5688999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-Cccceecc
Q psy11774 95 VAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLY 147 (304)
Q Consensus 95 V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~ 147 (304)
+++||. ||++.. +-+++.||+||+||.+ +|.||.++
T Consensus 527 v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 527 ATVMVI--------EDAERF---------GLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CcEEEE--------eCCCcC---------CHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999996 554421 2457889999999976 59999998
No 53
>KOG0341|consensus
Probab=99.48 E-value=2.3e-14 Score=134.22 Aligned_cols=110 Identities=19% Similarity=0.296 Sum_probs=96.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
...-.+|||.-.+.|++.+.+.|.-.+ +.++.+||+-++++|..+.+.|+.|+..|+||||+|..|+++|+|.+|||
T Consensus 419 KT~PpVLIFaEkK~DVD~IhEYLLlKG-VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN-- 495 (610)
T KOG0341|consen 419 KTSPPVLIFAEKKADVDDIHEYLLLKG-VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN-- 495 (610)
T ss_pred cCCCceEEEeccccChHHHHHHHHHcc-ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc--
Confidence 345679999999999999999886654 89999999999999999999999999999999999999999999999998
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
||.+.. -++|.||.||+||.+. |+.-.++++..
T Consensus 496 ------yDMP~e----------IENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 496 ------YDMPEE----------IENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ------CCChHH----------HHHHHHHhcccCCCCCcceeeeeecccc
Confidence 775544 4577799999999886 98877776643
No 54
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.47 E-value=4.4e-14 Score=111.39 Aligned_cols=64 Identities=31% Similarity=0.520 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHhhccCCcc----------cCCceecCCCcHHHHH
Q psy11774 205 SAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESVIYKGNC----------NCYGLIVPKSKREGRQ 268 (304)
Q Consensus 205 ~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~~----------~~~~f~~p~~~~~~~~ 268 (304)
+|++.|+.+||||++|+||++|+.|+.||++|++||||+.|..++|++ +++||..|.+.++..+
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~ 74 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAE 74 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHH
Confidence 489999999999999999999999999999999999999999999988 8899999887665444
No 55
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.47 E-value=1e-13 Score=133.73 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=93.7
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEec--------CCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCC
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAH--------SKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITI 92 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lh--------s~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI 92 (304)
++.+..+|+||..-++..+.+.+.|.+.+.-...-|- .||++.+|.++++.|+.|..+|+|||.|+|-|+||
T Consensus 362 ~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDI 441 (542)
T COG1111 362 EKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDI 441 (542)
T ss_pred hcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCC
Confidence 3455678999999999999999999765421112333 47999999999999999999999999999999999
Q ss_pred CCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHH
Q psy11774 93 DDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSED 150 (304)
Q Consensus 93 ~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~ 150 (304)
|+++.|| .|+|.. |---.+||.||+||.++|..|.|.++.
T Consensus 442 p~vDlVi--------fYEpvp----------SeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 442 PEVDLVI--------FYEPVP----------SEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred CcccEEE--------EecCCc----------HHHHHHHhhCccccCCCCeEEEEEecC
Confidence 9999999 477642 344578999999999999999999986
No 56
>KOG0326|consensus
Probab=99.45 E-value=6.3e-14 Score=128.50 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=97.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
-...+||+++...++-+++.+.+.+ +.+..+|+.|.++.|.++|..|.+|.-+.+||||+.-+||+|+.|.+|||+.++
T Consensus 322 INQsIIFCNS~~rVELLAkKITelG-yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 322 INQSIIFCNSTNRVELLAKKITELG-YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred ccceEEEeccchHhHHHHHHHHhcc-chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCC
Confidence 3468999999999999999999887 889999999999999999999999999999999999999999999999996655
Q ss_pred cceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 105 KETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
| +-++|.||.||+||.+. |.++.|.|-++
T Consensus 401 k------------------~aEtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 401 K------------------NAETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred C------------------CHHHHHHHccCCccCCCcceEEEEEehhh
Confidence 4 34678899999999886 99999988654
No 57
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.45 E-value=2.4e-13 Score=109.54 Aligned_cols=103 Identities=25% Similarity=0.327 Sum_probs=90.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
..+.+|||+++...++.+.+.|.+. ...+..+||+++..++..+++.+..+..+|+++|+.++.|+++|+++.||-.+.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~ 105 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDL 105 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCC
Confidence 5788999999999999999999874 478999999999999999999999999999999999999999999999995332
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCC-Ccccee
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFH 145 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~r 145 (304)
+.+...+.|+.||+||.+ .|.|+.
T Consensus 106 ------------------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 106 ------------------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred ------------------CCCHHHheecccccccCCCCceEEe
Confidence 456778889999999987 477764
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.45 E-value=1.6e-13 Score=141.25 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=89.2
Q ss_pred CCCcEEEEcCCHH--------HHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCC
Q psy11774 24 FPGAILCFLPGWQ--------DIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD 94 (304)
Q Consensus 24 ~~g~iLVFlp~~~--------ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~ 94 (304)
..+.++||+|..+ .++.+++.|.+. +.+.+..+||+|++++|.++++.|..|+.+|+|||+++|+|+|||+
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~ 549 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPN 549 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCC
Confidence 4568999999644 445566666553 3478999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccC
Q psy11774 95 VAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYS 148 (304)
Q Consensus 95 V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t 148 (304)
+++||. ||++.- +-+++.||+||+||.+ +|.||.+++
T Consensus 550 v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 550 ATVMVI--------ENAERF---------GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CcEEEE--------eCCCCC---------CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999996 554421 2356789999999977 599999985
No 59
>KOG0338|consensus
Probab=99.43 E-value=8.1e-14 Score=134.25 Aligned_cols=110 Identities=22% Similarity=0.293 Sum_probs=95.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
.....++||+-+.+...++.-+| ..-++.+--|||+|++++|.+.++.|++....|+||||+|.+|++|++|..|||
T Consensus 424 tf~~~~ivFv~tKk~AHRl~Ill-GLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN-- 500 (691)
T KOG0338|consen 424 TFQDRTIVFVRTKKQAHRLRILL-GLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN-- 500 (691)
T ss_pred hcccceEEEEehHHHHHHHHHHH-HHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe--
Confidence 34678999999999998885544 333488999999999999999999999999999999999999999999999998
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
|+ .|.|...|.||.||+.|.+. |..+.|..+.+
T Consensus 501 ------y~----------mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 501 ------YA----------MPKTIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred ------cc----------CchhHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 54 56788899999999888764 99999888764
No 60
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.42 E-value=2.8e-13 Score=147.06 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=85.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCC--------------------------------CcEEEEecCCCCHHHHhhhhcCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIP--------------------------------GLLVTMAHSKLDTEVQGAIFGHP 72 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~--------------------------------~~~v~~lhs~l~~~~q~~~~~~~ 72 (304)
.+.+|||++|+..++.++..|++.. .+.+..+||+|+.++|..+.+.+
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 5779999999999999999886431 12367899999999999999999
Q ss_pred CCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCcc
Q psy11774 73 PPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGE 142 (304)
Q Consensus 73 ~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~ 142 (304)
++|+.+|||||+.+|.||||++|++||+.| .|.|.+++.||+|||||...|.
T Consensus 324 K~G~LrvLVATssLELGIDIg~VDlVIq~g------------------sP~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 324 KSGELRCVVATSSLELGIDMGAVDLVIQVA------------------TPLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred HhCCceEEEeCcHHHccCCcccCCEEEEeC------------------CCCCHHHHHHHhCCCCCCCCCc
Confidence 999999999999999999999999999844 2567889999999999964333
No 61
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.42 E-value=3.5e-13 Score=137.55 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=97.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
.+..+|||+++.+.++.+.+.|.+.+ +.+..+||++++.+|.+++..+..|...|+||||++++|+++|++++||.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~g-i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi--- 516 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELG-IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--- 516 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhc-cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE---
Confidence 45679999999999999999998875 88999999999999999999999999999999999999999999999996
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSE 149 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~ 149 (304)
+|... ...|-|..+++||+|||||..+|.++.+.+.
T Consensus 517 -----~Dadi-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~ 552 (655)
T TIGR00631 517 -----LDADK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADK 552 (655)
T ss_pred -----eCccc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcC
Confidence 33221 1134467789999999999989999988775
No 62
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.41 E-value=2.1e-13 Score=101.39 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=67.7
Q ss_pred HHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceec
Q psy11774 44 VLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWI 123 (304)
Q Consensus 44 ~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~i 123 (304)
.|++. ++.+..+||+++.+++..+++.|..+..+|++||++++.|+++|++++||..+. +-
T Consensus 2 ~L~~~-~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~ 62 (78)
T PF00271_consen 2 FLEKK-GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PW 62 (78)
T ss_dssp HHHHT-TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ES
T ss_pred ChHHC-CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CC
Confidence 34444 489999999999999999999999999999999999999999999999998443 45
Q ss_pred chhhhhhhccccCCCC
Q psy11774 124 SRASVNQRAGRAGRTK 139 (304)
Q Consensus 124 sk~~~~QR~GRaGR~~ 139 (304)
|..++.||.||+||.+
T Consensus 63 ~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 63 SPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SHHHHHHHHTTSSTTT
T ss_pred CHHHHHHHhhcCCCCC
Confidence 7788999999999963
No 63
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.39 E-value=8e-13 Score=135.30 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=97.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
.+..+|||+++.+.++.+.+.|.+.+ +.+..+||++++.+|.++++.+..|...|+|||+++++|+++|++++||.+..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~g-i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~ 523 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELG-IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDA 523 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcc-eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCC
Confidence 45679999999999999999998875 89999999999999999999999999999999999999999999999997432
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSE 149 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~ 149 (304)
.. ...|.+..++.||+||+||...|.|+.+.+.
T Consensus 524 ei-------------fG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 524 DK-------------EGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred cc-------------cccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 21 0123467789999999999988999998874
No 64
>KOG0344|consensus
Probab=99.39 E-value=4.6e-13 Score=130.95 Aligned_cols=114 Identities=20% Similarity=0.319 Sum_probs=101.7
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
..+-+-++|||+-+.+-...+...|....++.|-.+||..++.++.+.+++|+.|+..|++|||+.+||+++-||..||+
T Consensus 383 ~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn 462 (593)
T KOG0344|consen 383 ASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN 462 (593)
T ss_pred hccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe
Confidence 44556789999999999999998887666789999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRY 152 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~ 152 (304)
||.+ -|.-+|+||.||+||.++ |++|.+||+++.
T Consensus 463 --------yD~p----------~s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 463 --------YDFP----------QSDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred --------cCCC----------chhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 7744 466688899999999886 999999999654
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.39 E-value=5.6e-13 Score=137.78 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=90.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHh-----hhhcCCCC----CC-------eEEEEecccc
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQG-----AIFGHPPP----GM-------RKVVLSTNVA 86 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~-----~~~~~~~~----g~-------~kvilaTnia 86 (304)
...+.+|||++++++++.+++.|.+.+ + ..|||.|++.+|. ++++.|.+ +. .+|+|||+++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g-~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEK-F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcC-C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 346789999999999999999998765 3 8999999999999 66766654 33 6899999999
Q ss_pred ccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccc-eeccCHHHHh-h-hhhcCCCc
Q psy11774 87 ETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GES-FHLYSEDRYR-R-MAEYSLPE 162 (304)
Q Consensus 87 e~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c-~rL~t~~~~~-~-~~~~~~pe 162 (304)
|+||||+. ++||+ ++ ...++|+||+||+||.+. |.+ +.+++.+ |. . -.....|+
T Consensus 347 erGLDId~-d~VI~--------d~------------aP~esyIQRiGRtgR~G~~~~~~i~vv~~~-~~~~~~~~vY~~~ 404 (844)
T TIGR02621 347 EVGVNISA-DHLVC--------DL------------APFESMQQRFGRVNRFGELQACQIAVVHLD-LGKDQDFDVYGKK 404 (844)
T ss_pred hhcccCCc-ceEEE--------CC------------CCHHHHHHHhcccCCCCCCCCceEEEEeec-cCCCcccCCCCHH
Confidence 99999997 67764 21 123789999999999765 322 3333221 11 1 11112356
Q ss_pred ccccchHHHHHHhh
Q psy11774 163 IFRKPLEQILLTCK 176 (304)
Q Consensus 163 i~r~~L~~~~L~lk 176 (304)
+....+..+.+..+
T Consensus 405 ~l~~t~~~L~~~~~ 418 (844)
T TIGR02621 405 IDKSTWSTLKKLQQ 418 (844)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666655555444
No 66
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.38 E-value=2.9e-13 Score=104.28 Aligned_cols=69 Identities=28% Similarity=0.399 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHhhcc-CCcc----------cCCceecCCCcHHHHHHHhcc
Q psy11774 205 SAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESVIY-KGNC----------NCYGLIVPKSKREGRQDRRKP 273 (304)
Q Consensus 205 ~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~~~~-~C~~----------~~~~f~~p~~~~~~~~~~~~~ 273 (304)
+|++.|+.+||||.+|+||++|+.|+.||++|++||||+.|+.+ +|.+ +.++|..| ..+.+....++.
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 8988 56777766 344444444444
Q ss_pred c
Q psy11774 274 A 274 (304)
Q Consensus 274 ~ 274 (304)
|
T Consensus 80 ~ 80 (92)
T smart00847 80 F 80 (92)
T ss_pred c
Confidence 4
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=1.3e-12 Score=132.27 Aligned_cols=106 Identities=24% Similarity=0.190 Sum_probs=85.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC---Cee-----
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID---DVA----- 96 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~---~V~----- 96 (304)
+..+|||+++.++++.+.+.|.+.+ +.+..|||..+..++..+...+ ++.+|+||||+|.||+||+ +|.
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~g-i~~~~Lhg~~~~rE~~ii~~ag--~~g~VlVATdmAgRGtDI~l~~~V~~~GGL 549 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAG-LPHQVLNAKQDAEEAAIVARAG--QRGRITVATNMAGRGTDIKLEPGVAARGGL 549 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEeeCCcHHHHHHHHHHcC--CCCcEEEEccchhcccCcCCccchhhcCCC
Confidence 4569999999999999999998875 8999999997655554444443 3447999999999999999 776
Q ss_pred EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHH
Q psy11774 97 YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDR 151 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~ 151 (304)
+||++.+ |-|...+.||+||+||.+ +|.|+.+++.++
T Consensus 550 hVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 550 HVILTER------------------HDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EEEEcCC------------------CCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9998433 335567789999999988 599999988754
No 68
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.37 E-value=8.1e-13 Score=122.35 Aligned_cols=126 Identities=19% Similarity=0.322 Sum_probs=93.4
Q ss_pred cccccchhchhhhhhhccCCC-CCCCcEEEEcCCHHHHHHHHHHHh-cCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEE
Q psy11774 2 FRNYLYCWQTTFFYSTHFPCP-SFPGAILCFLPGWQDIIQVSRVLS-AIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKV 79 (304)
Q Consensus 2 ~~~Yl~~~~~~~~~~~~i~~~-~~~g~iLVFlp~~~ei~~~~~~L~-~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kv 79 (304)
|.+++.-..++..+...+.+. ...-++|||+|+.+-.+++++.|+ ..+...+...||. ...|.+-.+.|++|+.++
T Consensus 281 ~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~l 358 (441)
T COG4098 281 WNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITL 358 (441)
T ss_pred HHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEE
Confidence 555665555553322222222 234569999999999999999994 5566778889987 567888888999999999
Q ss_pred EEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCC--CC-cccee
Q psy11774 80 VLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRT--KP-GESFH 145 (304)
Q Consensus 80 ilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~--~~-G~c~r 145 (304)
+++|.|+|||+|+|+|+++| .+....+ -|+++.+|-+||+||. +| |..+.
T Consensus 359 LiTTTILERGVTfp~vdV~V---------lgaeh~v-------fTesaLVQIaGRvGRs~~~PtGdv~F 411 (441)
T COG4098 359 LITTTILERGVTFPNVDVFV---------LGAEHRV-------FTESALVQIAGRVGRSLERPTGDVLF 411 (441)
T ss_pred EEEeehhhcccccccceEEE---------ecCCccc-------ccHHHHHHHhhhccCCCcCCCCcEEE
Confidence 99999999999999999777 2222221 2789999999999995 34 66443
No 69
>PRK13766 Hef nuclease; Provisional
Probab=99.36 E-value=9.5e-13 Score=137.31 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=96.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCC--------CCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSK--------LDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD 94 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~--------l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~ 94 (304)
.+.+.+|||+++.+.++.+.+.|...+ +.+..+||. +++.+|.++++.|..|..+|++||++++.|+|+|+
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~ 441 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEG-IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPS 441 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCC-CceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 467889999999999999999997654 778888876 99999999999999999999999999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHH
Q psy11774 95 VAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSED 150 (304)
Q Consensus 95 V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~ 150 (304)
+++||. ||+. .|...++||+||+||.++|.+|.|++++
T Consensus 442 ~~~VI~--------yd~~----------~s~~r~iQR~GR~gR~~~~~v~~l~~~~ 479 (773)
T PRK13766 442 VDLVIF--------YEPV----------PSEIRSIQRKGRTGRQEEGRVVVLIAKG 479 (773)
T ss_pred CCEEEE--------eCCC----------CCHHHHHHHhcccCcCCCCEEEEEEeCC
Confidence 999996 7764 2455688999999999999999998753
No 70
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=2.5e-12 Score=132.70 Aligned_cols=107 Identities=23% Similarity=0.212 Sum_probs=91.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCC---CCee----
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITI---DDVA---- 96 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI---~~V~---- 96 (304)
.+.++|||+.+.++++.+.+.|.+.+ +.+..|||.+...++..+...+.+| +|+||||+|.||+|| |+|.
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~g-i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GG 503 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAG-IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGG 503 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccC
Confidence 46679999999999999999998875 8999999999888887777776655 799999999999999 7999
Q ss_pred -EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHH
Q psy11774 97 -YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDR 151 (304)
Q Consensus 97 -~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~ 151 (304)
+||++.+ |-|...+.||+||+||.+ +|.++.+++.++
T Consensus 504 L~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 504 LAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred cEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 9998433 345667889999999988 599999888654
No 71
>KOG0350|consensus
Probab=99.33 E-value=7.9e-13 Score=127.23 Aligned_cols=117 Identities=18% Similarity=0.292 Sum_probs=100.1
Q ss_pred hccCCCCCCCcEEEEcCCHHHHHHHHHHHh---cCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC
Q psy11774 17 THFPCPSFPGAILCFLPGWQDIIQVSRVLS---AIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID 93 (304)
Q Consensus 17 ~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~---~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~ 93 (304)
.+.....+-..+|+|+++.+...+++..|. .....++-.+.|++....|.+.++.|..|..+|+||+|++.||||+.
T Consensus 421 ~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~ 500 (620)
T KOG0350|consen 421 YALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVN 500 (620)
T ss_pred HHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccc
Confidence 344445566789999999999999999886 22346777799999999999999999999999999999999999999
Q ss_pred CeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 94 DVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 94 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
||+.||| ||++... -+|+||+||++|.+. |.||.|.++..
T Consensus 501 ~v~~VIN--------Yd~P~~~----------ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 501 DVDNVIN--------YDPPASD----------KTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred ccceEee--------cCCCchh----------hHHHHhhcccccccCCceEEEeecccc
Confidence 9999998 9877544 456699999999886 99999988754
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.32 E-value=5.6e-12 Score=129.24 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=90.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC---------
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID--------- 93 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~--------- 93 (304)
..+.++|||+++.+..+.+.+.|.+.+ +.+..|||.+.+.++..+.+.+.+| +|+||||+|.||+||+
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~g-i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREG-IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccC
Confidence 345679999999999999999998865 8899999999998888887777666 7999999999999999
Q ss_pred CeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHH
Q psy11774 94 DVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDR 151 (304)
Q Consensus 94 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~ 151 (304)
++.+||+ |++++. + ...||+||+||.+ ||.++.+.+.++
T Consensus 499 GL~vIit--------~~~ps~----------r-id~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 499 GLAVIGT--------ERMENS----------R-VDLQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred CeEEEEe--------cCCCCc----------H-HHHHhhhcccCCCCceeEEEEEccch
Confidence 9999996 665532 2 2379999999988 599998888644
No 73
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.30 E-value=3.7e-12 Score=94.11 Aligned_cols=80 Identities=33% Similarity=0.397 Sum_probs=69.5
Q ss_pred HHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccc
Q psy11774 41 VSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDN 120 (304)
Q Consensus 41 ~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~ 120 (304)
+.+.|+.. ++.+..+||+++.++|..+++.|..+..+|+++|++++.|+++++++.||..+.
T Consensus 3 l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~----------------- 64 (82)
T smart00490 3 LAELLKEL-GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL----------------- 64 (82)
T ss_pred HHHHHHHC-CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC-----------------
Confidence 45566555 488999999999999999999999999999999999999999999999997443
Q ss_pred eecchhhhhhhccccCCCC
Q psy11774 121 QWISRASVNQRAGRAGRTK 139 (304)
Q Consensus 121 ~~isk~~~~QR~GRaGR~~ 139 (304)
+.+.+.+.|+.||+||.+
T Consensus 65 -~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 65 -PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred -CCCHHHHHHhhcccccCC
Confidence 467889999999999953
No 74
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.28 E-value=6.8e-12 Score=122.67 Aligned_cols=201 Identities=18% Similarity=0.278 Sum_probs=143.3
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
..-.|..+||..|+..++.+++.|...+ +.+.|+|++|+..+|+.+-..|..+...+||+|-.+..|+|+|--.+|.+|
T Consensus 437 kg~rGQtIVFT~SRrr~h~lA~~L~~kG-~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs 515 (830)
T COG1202 437 KGYRGQTIVFTYSRRRCHELADALTGKG-LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES 515 (830)
T ss_pred cCcCCceEEEecchhhHHHHHHHhhcCC-cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH
Confidence 4568999999999999999999998874 999999999999999999999999999999999999999999954444331
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCC---CccceeccCH-HHHh-hhh------------hcCCCccc
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGESFHLYSE-DRYR-RMA------------EYSLPEIF 164 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c~rL~t~-~~~~-~~~------------~~~~pei~ 164 (304)
--+-..|+|-.++.|+.|||||-. .|++|-|.-. ..|+ .|. ..+.|=+.
T Consensus 516 --------------LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~v 581 (830)
T COG1202 516 --------------LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIV 581 (830)
T ss_pred --------------HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCccee
Confidence 112347999999999999999943 4888877543 2232 111 11111111
Q ss_pred c---cchHHHHHHhhcCCCccCCccccc-----ccccCCCCCCHHHHHHHHHHHHHcCCcccCC---CcccchhhhccCC
Q psy11774 165 R---KPLEQILLTCKVGESLYSTERCSS-----FLSQLPEPPDPASITSAATELKLMGVFDQEE---NLTPLGKRIAAMP 233 (304)
Q Consensus 165 r---~~L~~~~L~lk~~~~~~~~~~~~~-----fl~~~~~pP~~~~l~~al~~L~~lgald~~~---~lT~lG~~l~~lp 233 (304)
. .+-.+-+|..- +.. .....++ .+..+++ ...++..|+.+|+++.+| ++|+.|+.++.-=
T Consensus 582 ey~ee~e~e~vLA~~-~v~--~s~~~i~~v~~~~~g~~~~------~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~F 652 (830)
T COG1202 582 EYDEEDEEENVLASA-GVT--NSLSVIERVNSLMLGAAFD------PKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSF 652 (830)
T ss_pred ccCcHHHHHHHHHHh-hhc--CcHHHHhhcChhhccccCC------HHHHHHHHHhcCCeeccCCEeeeccccceeEEee
Confidence 1 11222233211 111 0111111 1211223 488999999999999887 6899999999999
Q ss_pred CchhhhHHHHHhh
Q psy11774 234 CHPKLSKALVESV 246 (304)
Q Consensus 234 l~p~~~k~l~~~~ 246 (304)
+.|.-+-.|-.++
T Consensus 653 l~p~~a~~Ir~~v 665 (830)
T COG1202 653 LGPSEAEFIREGV 665 (830)
T ss_pred cCchHHHHHHHhh
Confidence 9999998888775
No 75
>KOG0354|consensus
Probab=99.26 E-value=7.4e-12 Score=126.70 Aligned_cols=109 Identities=18% Similarity=0.316 Sum_probs=90.4
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEec--------CCCCHHHHhhhhcCCCCCCeEEEEeccccccCCC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAH--------SKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSIT 91 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lh--------s~l~~~~q~~~~~~~~~g~~kvilaTniae~sit 91 (304)
..+...++||+-+++.++.+.++|.+. .+++...+- .+|++.+|+++++.|..|..+|+|||.|||-|+|
T Consensus 410 ~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLD 489 (746)
T KOG0354|consen 410 QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLD 489 (746)
T ss_pred cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCC
Confidence 566788999999999999999999732 111222221 4799999999999999999999999999999999
Q ss_pred CCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCH
Q psy11774 92 IDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSE 149 (304)
Q Consensus 92 I~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~ 149 (304)
|+.++.||- ||..++.- ..+||.|| ||.+.|.|+.|++.
T Consensus 490 I~ec~lVIc--------Yd~~snpI----------rmIQrrGR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 490 IGECNLVIC--------YDYSSNPI----------RMVQRRGR-GRARNSKCVLLTTG 528 (746)
T ss_pred cccccEEEE--------ecCCccHH----------HHHHHhcc-ccccCCeEEEEEcc
Confidence 999999995 87665522 45699999 99999999999994
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.25 E-value=1.8e-11 Score=116.91 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCC-CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIP-GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~-~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
.+++.+|||+++.++++.+++.|++.+ ++.+..+||.+++.+|.++. +..|+|||+++|+||||+++ +||
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-- 340 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-- 340 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE--
Confidence 346789999999999999999998753 46788999999999987654 45799999999999999987 555
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccC
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAG 136 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaG 136 (304)
++ +.+.++|.||+||+|
T Consensus 341 -------~~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -------FS-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred -------EC-----------CCCHHHHhhhcccCC
Confidence 22 235678999999998
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.24 E-value=1.7e-11 Score=122.06 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=86.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEec-cccccCCCCCCeeEEEeCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLST-NVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaT-niae~sitI~~V~~VID~g 102 (304)
.++.+|||+...+.++.+++.|++.+ ..+..+||+++.++|.++++.+..|+..|+||| +++.+|+|+|+++.||.
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g-~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl-- 419 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVY-DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF-- 419 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--
Confidence 45679999999999999999998865 789999999999999999888888888999998 89999999999999994
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCCcc
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGE 142 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~ 142 (304)
++|. -|+..+.||+||+||..+|+
T Consensus 420 ------~~p~----------~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 420 ------AHPS----------KSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ------ecCC----------cchhhhhhhhhccccCCCCC
Confidence 2222 25677889999999988765
No 78
>KOG0349|consensus
Probab=99.21 E-value=1.9e-11 Score=116.24 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=94.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCC--CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIP--GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~--~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
..-...++|+.++.+++.+.+.+.+.+ .+.++++|+...+++|.+.++.|+.+..|.+++||+|.+|++|.++-|+||
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEE
Confidence 345679999999999999999997653 489999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceecc
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLY 147 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~ 147 (304)
++.|-.|.+|.||.||+||... |..+.|.
T Consensus 583 ------------------vtlpd~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 583 ------------------VTLPDDKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred ------------------EecCcccchhhhhhhccchhhhcceeEEEe
Confidence 3344567788999999999765 8888775
No 79
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.20 E-value=3.3e-11 Score=127.00 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=94.2
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCC--CCeEEEEeccccccCCCCCCe
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPP--GMRKVVLSTNVAETSITIDDV 95 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~--g~~kvilaTniae~sitI~~V 95 (304)
++.+...+..+|||+.+++.+..+.+.|+...++.+..+||+|++.+|.++++.|.. |..+|+|||+++.+|++++.+
T Consensus 486 ~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a 565 (956)
T PRK04914 486 DFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFA 565 (956)
T ss_pred HHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccc
Confidence 333444567899999999999999999966556999999999999999999998876 458999999999999999999
Q ss_pred eEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC---ccceeccCHH
Q psy11774 96 AYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP---GESFHLYSED 150 (304)
Q Consensus 96 ~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~---G~c~rL~t~~ 150 (304)
++||+ ||.+ -+-..++||.||+||.+. -..|.++.+.
T Consensus 566 ~~VIn--------fDlP----------~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 566 SHLVL--------FDLP----------FNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred cEEEE--------ecCC----------CCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 99998 6644 345667899999999654 3456666654
No 80
>KOG0327|consensus
Probab=99.19 E-value=4.4e-11 Score=112.15 Aligned_cols=112 Identities=20% Similarity=0.345 Sum_probs=99.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
.-...++|++|++.+..+...|...+ +.+..+|+.+.+.+|..+...|..|..+|+++|+++.+|++|.++..||+
T Consensus 262 ~~~q~~if~nt~r~v~~l~~~L~~~~-~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin--- 337 (397)
T KOG0327|consen 262 RVTQAVIFCNTRRKVDNLTDKLRAHG-FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN--- 337 (397)
T ss_pred hhhcceEEecchhhHHHHHHHHhhCC-ceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee---
Confidence 34668999999999999999996554 89999999999999999999999999999999999999999999999998
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHhh
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYRR 154 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~~ 154 (304)
||.+ ..+++|.||+||+||.+ +|..+.+.++++...
T Consensus 338 -----ydlP----------~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 338 -----YDLP----------ARKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred -----eccc----------cchhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 7654 45778889999999976 599999999876543
No 81
>KOG0334|consensus
Probab=99.15 E-value=4.5e-11 Score=123.59 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=98.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
..|+++||+...+.++.|.+.|.+.+ +.+..|||+.++.+|....+.|+.+.-++++||+++.+|+++.++..||+
T Consensus 612 e~~~tiiFv~~qe~~d~l~~~L~~ag-~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--- 687 (997)
T KOG0334|consen 612 EDGKTIIFVDKQEKADALLRDLQKAG-YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--- 687 (997)
T ss_pred hcCCEEEEEcCchHHHHHHHHHHhcC-cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE---
Confidence 48999999999999999999999765 88888999999999999999999999999999999999999999999998
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
||.++.... |.||.||+||+++ |.||.+.+.++
T Consensus 688 -----yd~pnh~ed----------yvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 688 -----YDFPNHYED----------YVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred -----cccchhHHH----------HHHHhcccccCCccceeEEEeChHH
Confidence 776666443 7799999999987 99998888743
No 82
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.14 E-value=1.1e-10 Score=119.30 Aligned_cols=108 Identities=23% Similarity=0.183 Sum_probs=91.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCC-------e
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD-------V 95 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~-------V 95 (304)
..+.++|||+.+.++.+.+.+.|.+.+ +....||+. +.+|...+..+..+...|.||||+|.||+||+. .
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~g-i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GG 479 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERG-IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGG 479 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCC
Confidence 346679999999999999999998876 788899998 778888888888888999999999999999998 4
Q ss_pred eEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHH
Q psy11774 96 AYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDR 151 (304)
Q Consensus 96 ~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~ 151 (304)
-+||.+.+ |-|...+.||.||+||.| ||.+..+.+.++
T Consensus 480 l~VI~t~~------------------p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 480 LYVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred cEEEecCC------------------CCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 49997443 346777889999999988 499888877654
No 83
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=1.3e-10 Score=119.59 Aligned_cols=106 Identities=25% Similarity=0.238 Sum_probs=89.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCC---CCee----
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITI---DDVA---- 96 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI---~~V~---- 96 (304)
.+.+||||+.+.+..+.+.+.|.+.+ +....||+.+...++..+.+++.+|. |.||||+|.||.|| ++|.
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~g-i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GG 515 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAG-IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGG 515 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCC-CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCC
Confidence 46779999999999999999998875 78899999998777777777776664 99999999999999 5899
Q ss_pred -EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHH
Q psy11774 97 -YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSED 150 (304)
Q Consensus 97 -~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~ 150 (304)
+||.+.+ |-|+..+.||.||+||.| ||.+..+.+.+
T Consensus 516 LhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 516 LAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred cEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 9997443 346677789999999988 59988887765
No 84
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=1.1e-10 Score=119.56 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=87.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCC-CeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPG-MRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g-~~kvilaTniae~sitI~~V~~VID~g 102 (304)
.+..+|||+...+.++.+++.|. +..+||++++.+|.++++.|..+ ..+++|+|+++.+|||+|++++||.
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~-- 566 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ-- 566 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE--
Confidence 45679999999998888888772 33489999999999999999765 6799999999999999999999996
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccc-------eeccCHHHH
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GES-------FHLYSEDRY 152 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c-------~rL~t~~~~ 152 (304)
+++.. -|+.++.||.||++|.++ |.+ |.|.+++.-
T Consensus 567 ------~s~~~---------gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 567 ------ISSHY---------GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred ------eCCCC---------CCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 44332 278899999999999876 444 888876543
No 85
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.10 E-value=1.2e-10 Score=120.58 Aligned_cols=216 Identities=23% Similarity=0.246 Sum_probs=143.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC-----------------CC-------------------cEEEEecCCCCHHHHh
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI-----------------PG-------------------LLVTMAHSKLDTEVQG 66 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~-----------------~~-------------------~~v~~lhs~l~~~~q~ 66 (304)
...|.+|||++++.+....++.|... .. .-+.-.|++|+.++|.
T Consensus 251 ~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 251 AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 45789999999999999998888510 00 1244579999999999
Q ss_pred hhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC--C-ccc
Q psy11774 67 AIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK--P-GES 143 (304)
Q Consensus 67 ~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~--~-G~c 143 (304)
-+-+.|+.|+.|||+||+.+..|++.|-=++|| .|. ..||+..| .+.++.-.+.|+.|||||-+ + |..
T Consensus 331 ~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VII-k~~---~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 331 LVEDAFRKGKIKVLVSTPTLAAGVNLPARTVII-KDT---RRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred HHHHHHhcCCceEEEechHHhhhcCCcceEEEE-eee---EEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcE
Confidence 999999999999999999999999999655555 332 24776322 46789999999999999954 1 444
Q ss_pred eecc-CHH---HHhhhhhcCCCcccccc------hHHHHHHhhcCCCccCCcccccccccCCCCCC-------HHHHHHH
Q psy11774 144 FHLY-SED---RYRRMAEYSLPEIFRKP------LEQILLTCKVGESLYSTERCSSFLSQLPEPPD-------PASITSA 206 (304)
Q Consensus 144 ~rL~-t~~---~~~~~~~~~~pei~r~~------L~~~~L~lk~~~~~~~~~~~~~fl~~~~~pP~-------~~~l~~a 206 (304)
+.+- +.+ .+.....+..||...+. +...++.+.......+-...-.|+..+.-.|. ...+.++
T Consensus 402 ~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~ 481 (766)
T COG1204 402 IILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILAS 481 (766)
T ss_pred EEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 4443 322 22244455556542211 22222222211110011122233333333333 3557888
Q ss_pred HHHHHHcC-CcccC---CCcccchhhhccCCCchhhhHHHHHhhc
Q psy11774 207 ATELKLMG-VFDQE---ENLTPLGKRIAAMPCHPKLSKALVESVI 247 (304)
Q Consensus 207 l~~L~~lg-ald~~---~~lT~lG~~l~~lpl~p~~~k~l~~~~~ 247 (304)
++.|.+.+ .++.. -.-|++|+.++.+.++|..++.+.....
T Consensus 482 ~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 482 LRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred HHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHH
Confidence 99998875 55543 2678999999999999999998887654
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.10 E-value=1.6e-10 Score=120.98 Aligned_cols=95 Identities=15% Similarity=0.224 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCC--CcEEEEecCCCCHHHHh----hhhcCC-CCCC---eEEEEeccccccCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIP--GLLVTMAHSKLDTEVQG----AIFGHP-PPGM---RKVVLSTNVAETSITID 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~--~~~v~~lhs~l~~~~q~----~~~~~~-~~g~---~kvilaTniae~sitI~ 93 (304)
.++.+|||+|+.+.++.+++.|++.. ...+..+||+++..+|. ++++.+ +.|+ .+|+|||+|+|.|+||
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 46789999999999999999998643 36899999999999883 455555 4454 4899999999999999
Q ss_pred CeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC
Q psy11774 94 DVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK 139 (304)
Q Consensus 94 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~ 139 (304)
+++++|. . .....+++||+||+||.+
T Consensus 638 d~DvlIt--------d------------laPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 638 DFDWLIT--------Q------------LCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred CCCeEEE--------C------------CCCHHHHHHHHhccCCCC
Confidence 4788884 1 123468899999999963
No 87
>KOG0351|consensus
Probab=99.09 E-value=1.7e-10 Score=120.96 Aligned_cols=115 Identities=22% Similarity=0.223 Sum_probs=103.3
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
..+.+.++|++.++.+++.+...|++.+ +....+|+||+..+|..+-+.+-.++.+||+||=....||+.|||++||..
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~-~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLG-KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHY 560 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhc-hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEEC
Confidence 3567889999999999999999999876 889999999999999999999999999999999999999999999999998
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHhhh
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYRRM 155 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~~~ 155 (304)
+++| |-+.|.|-+|||||.| +..|..+|+-.++..+
T Consensus 561 ~lPk------------------s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l 597 (941)
T KOG0351|consen 561 SLPK------------------SFEGYYQEAGRAGRDGLPSSCVLLYGYADISEL 597 (941)
T ss_pred CCch------------------hHHHHHHhccccCcCCCcceeEEecchhHHHHH
Confidence 7765 5567789999999987 5999999998877643
No 88
>KOG0921|consensus
Probab=99.08 E-value=1.3e-11 Score=125.34 Aligned_cols=226 Identities=8% Similarity=-0.231 Sum_probs=185.7
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCC-----CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCee
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIP-----GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVA 96 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~-----~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~ 96 (304)
-.+++..|+||+++--+......++..+ ...+.+.|+.+...++..+++....+..+++..|+.+++.+++..+.
T Consensus 649 flpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka 728 (1282)
T KOG0921|consen 649 FLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKA 728 (1282)
T ss_pred ecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeee
Confidence 3578999999999999999888887643 24678899999999999999999999999999999999999999999
Q ss_pred EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHhhhhhcCCCcccccchHHHHHHhh
Q psy11774 97 YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRMAEYSLPEIFRKPLEQILLTCK 176 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~~~~~~~~pei~r~~L~~~~L~lk 176 (304)
+|++++..+.+.+-....++.....|.++-...||.|++++.+.+.||.++....+..|..++.|||.++.....++.++
T Consensus 729 ~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~ 808 (1282)
T KOG0921|consen 729 KEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIG 808 (1282)
T ss_pred eeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHH
Confidence 99999999999888888999999999999999999999999999999999999999999999999999998877777777
Q ss_pred -cCCCccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHhhccCCcc
Q psy11774 177 -VGESLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESVIYKGNC 252 (304)
Q Consensus 177 -~~~~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~~ 252 (304)
+... ..-.++-.+..+|+......+.-.+...-+.+.+-.+|++|+.....|+.|..|++....+.+--.+
T Consensus 809 ~fl~k-----al~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~ 880 (1282)
T KOG0921|consen 809 EFLGK-----ALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASA 880 (1282)
T ss_pred HHHhh-----ccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcc
Confidence 3222 1223444455766665555444444444444444467899999999999999998877776554444
No 89
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.06 E-value=1.8e-10 Score=118.85 Aligned_cols=105 Identities=23% Similarity=0.212 Sum_probs=90.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
....|||+||+...+.+...|.+.....+...||+++.+.|..+.+.++.|..|++|||.-+|-||||.+|+.||.
T Consensus 253 ~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq---- 328 (814)
T COG1201 253 HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ---- 328 (814)
T ss_pred cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE----
Confidence 4589999999999999999998876678899999999999999999999999999999999999999999999997
Q ss_pred cceeecCCCCcccccceecchhhhhhhccccCCCC----Cccceecc
Q psy11774 105 KETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK----PGESFHLY 147 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~----~G~c~rL~ 147 (304)
|.+ |-|-+...||.||+|+.- .|..|...
T Consensus 329 ----~~S----------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 329 ----LGS----------PKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ----eCC----------cHHHHHHhHhccccccccCCcccEEEEecC
Confidence 433 345567779999999732 25555444
No 90
>KOG4284|consensus
Probab=99.01 E-value=2.1e-10 Score=113.52 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=98.6
Q ss_pred hccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCee
Q psy11774 17 THFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVA 96 (304)
Q Consensus 17 ~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~ 96 (304)
.|+.+.-+--..|||.+...-++.++..|...+ +.+..+.|.|++.+|..+++..+.-.-+|+||||+..+|||-|+|.
T Consensus 264 ~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG-~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vN 342 (980)
T KOG4284|consen 264 THVFKSIPYVQALVFCDQISRAEPIATHLKSSG-LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVN 342 (980)
T ss_pred HHHHhhCchHHHHhhhhhhhhhhHHHHHhhccC-CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccc
Confidence 455566666779999999999999999998765 9999999999999999999988877889999999999999999999
Q ss_pred EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHH
Q psy11774 97 YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSED 150 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~ 150 (304)
.||| .|++ ..-..|.||+|||||.+. |..+.++-.+
T Consensus 343 LVVN--------iD~p----------~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 343 LVVN--------IDAP----------ADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred eEEe--------cCCC----------cchHHHHHHhhhcccccccceeEEEeccc
Confidence 9998 4443 455677799999999987 9988776543
No 91
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.01 E-value=4.6e-10 Score=118.02 Aligned_cols=109 Identities=20% Similarity=0.296 Sum_probs=94.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
..+|.+-.-.|-.++|+.+.+.|++. |..+|...||.|+..+-.+++..|.+|...|+|||.|.|+|||||++..+|=
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII- 879 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII- 879 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE-
Confidence 35788998899999999999999875 7899999999999999999999999999999999999999999999998772
Q ss_pred CCccceeecCCC-CcccccceecchhhhhhhccccCCCCC-ccceeccCH
Q psy11774 102 GCHKETRYNSKD-DLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSE 149 (304)
Q Consensus 102 g~~k~~~yd~~~-~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~ 149 (304)
.+... |+ |+..|-+||+||... |.||.||+.
T Consensus 880 -------e~AD~fGL----------sQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 880 -------ERADKFGL----------AQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred -------eccccccH----------HHHHHhccccCCccceEEEEEeecC
Confidence 22221 32 456699999999775 999999985
No 92
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=5.6e-10 Score=116.24 Aligned_cols=108 Identities=23% Similarity=0.189 Sum_probs=88.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC---CeeEE--
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID---DVAYV-- 98 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~---~V~~V-- 98 (304)
.+.+||||+.+.+..+.+.+.|...+ +....||+ .+.+|...+..+..+...|+||||+|.||+||+ +|..|
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~g-I~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGG 673 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKR-IAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGG 673 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcC-CCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCC
Confidence 46789999999999999999998875 78889997 477788888888888889999999999999999 55433
Q ss_pred ---EeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHH
Q psy11774 99 ---VDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRY 152 (304)
Q Consensus 99 ---ID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~ 152 (304)
|++. .+-|+..+.||.||+||.| ||.+..+.+.++.
T Consensus 674 L~VIgte------------------rhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 674 LFILGSE------------------RHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred ceeeCCC------------------CCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 5422 2345666789999999988 5999998887653
No 93
>KOG0352|consensus
Probab=98.99 E-value=3.9e-10 Score=107.24 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=95.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
...|--+|++.|++++++++-.|...+ +....+|+||...+|.++-+.+-.++.-||+||+-..+|++-|+|+|||+
T Consensus 253 ~~~GCGIVYCRTR~~cEq~AI~l~~~G-i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH-- 329 (641)
T KOG0352|consen 253 TFTGCGIVYCRTRNECEQVAIMLEIAG-IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH-- 329 (641)
T ss_pred CcCcceEEEeccHHHHHHHHHHhhhcC-cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--
Confidence 346789999999999999999998766 88999999999999999999888899999999999999999999999996
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHHHh
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDRYR 153 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~~~ 153 (304)
||+.. +-+-|.|-.|||||.+. ..|=-.|++++-+
T Consensus 330 ------W~~~q----------n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 330 ------WSPSQ----------NLAGYYQESGRAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred ------cCchh----------hhHHHHHhccccccCCCccceeeeecccchH
Confidence 77554 45677799999999886 5554446665543
No 94
>PRK14701 reverse gyrase; Provisional
Probab=98.78 E-value=5.3e-09 Score=115.71 Aligned_cols=117 Identities=11% Similarity=0.005 Sum_probs=88.6
Q ss_pred CCcEEEEcCCHHHH---HHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEec----cccccCCCCCC-ee
Q psy11774 25 PGAILCFLPGWQDI---IQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLST----NVAETSITIDD-VA 96 (304)
Q Consensus 25 ~g~iLVFlp~~~ei---~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaT----niae~sitI~~-V~ 96 (304)
+...|||+++++.+ +.+++.|.+.+ +.+.++||+ |.++++.|..|+.+|+||| |+|.||||+|+ |+
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~G-i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vr 403 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDG-FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIR 403 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCC-CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccC
Confidence 34689999998865 78899998865 999999995 7788899999999999999 69999999999 99
Q ss_pred EEEeCCCcccee----ecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 97 YVVDTGCHKETR----YNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 97 ~VID~g~~k~~~----yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
|||+.|.+|... |...... .+. ...+.++.|||||.+ ++.|+..+..+...
T Consensus 404 yvi~~~~Pk~~~~~e~~~~~~~~-----~~~-~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 404 FAVFYGVPKFRFRVDLEDPTIYR-----ILG-LLSEILKIEEELKEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred EEEEeCCCCCCcchhhcccchhh-----hhc-chHHHHHhhhhcccCCcchhHHHhHHHHHH
Confidence 999999888432 2211110 001 234557789999977 57787666665544
No 95
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.74 E-value=9.8e-09 Score=103.12 Aligned_cols=105 Identities=21% Similarity=0.337 Sum_probs=81.8
Q ss_pred cEEEEcCCHHHHH--------HHHHHHhc-CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeE
Q psy11774 27 AILCFLPGWQDII--------QVSRVLSA-IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAY 97 (304)
Q Consensus 27 ~iLVFlp~~~ei~--------~~~~~L~~-~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~ 97 (304)
.+-|-+|=.+|-+ ..++.|.. .+++++-.+||.|+++++.++++.|++|+.+|+|||++.|-|||+||.++
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATv 554 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATV 554 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeE
Confidence 3555555544433 34444442 35688999999999999999999999999999999999999999999998
Q ss_pred EEeCCCccceeecCCC-CcccccceecchhhhhhhccccCCCC-CccceeccCH
Q psy11774 98 VVDTGCHKETRYNSKD-DLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSE 149 (304)
Q Consensus 98 VID~g~~k~~~yd~~~-~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~ 149 (304)
.| .+|+.. |+ |+..|=+||+||.. ++.|+-+|..
T Consensus 555 MV--------Ie~AERFGL----------aQLHQLRGRVGRG~~qSyC~Ll~~~ 590 (677)
T COG1200 555 MV--------IENAERFGL----------AQLHQLRGRVGRGDLQSYCVLLYKP 590 (677)
T ss_pred EE--------EechhhhhH----------HHHHHhccccCCCCcceEEEEEeCC
Confidence 77 355543 43 45669999999966 4999999875
No 96
>KOG0346|consensus
Probab=98.74 E-value=1e-08 Score=98.03 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=90.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-------------------
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------------------- 84 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------------------- 84 (304)
-.|.+|+|+++.+-+-++.-.|+..+ ++.+.|.|.||..-|.-+++.|..|...+|+|||
T Consensus 267 I~gKsliFVNtIdr~YrLkLfLeqFG-iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~ 345 (569)
T KOG0346|consen 267 IRGKSLIFVNTIDRCYRLKLFLEQFG-IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEK 345 (569)
T ss_pred hcCceEEEEechhhhHHHHHHHHHhC-cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccccccccc
Confidence 47999999999988888877777765 8889999999999999999999999999999999
Q ss_pred ----------------ccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceecc
Q psy11774 85 ----------------VAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLY 147 (304)
Q Consensus 85 ----------------iae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~ 147 (304)
=..+|||+..|..||| ||.+ -+..+|+||+||++|... |.+..+.
T Consensus 346 ~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD~P----------~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 346 NPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FDFP----------ETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred CCCCccccccccCchhchhccccchheeeeee--------cCCC----------CchHHHHHhccccccCCCCCceEEEe
Confidence 1347899999999998 4433 345578899999999764 8887776
Q ss_pred CHH
Q psy11774 148 SED 150 (304)
Q Consensus 148 t~~ 150 (304)
...
T Consensus 408 ~P~ 410 (569)
T KOG0346|consen 408 SPK 410 (569)
T ss_pred cch
Confidence 543
No 97
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.74 E-value=1.1e-08 Score=102.18 Aligned_cols=99 Identities=22% Similarity=0.283 Sum_probs=71.0
Q ss_pred HHHHHHHHhcC-CCcEEEEecCCCCHHHH--hhhhcCCCCCCeEEEEeccccccCCCCCCeeEEE--eCCCccceeecCC
Q psy11774 38 IIQVSRVLSAI-PGLLVTMAHSKLDTEVQ--GAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV--DTGCHKETRYNSK 112 (304)
Q Consensus 38 i~~~~~~L~~~-~~~~v~~lhs~l~~~~q--~~~~~~~~~g~~kvilaTniae~sitI~~V~~VI--D~g~~k~~~yd~~ 112 (304)
++++.+.|.+. ++..+..+|+.++.... .++++.+..|+..|+|+|++++.|+++|+|+.|+ | +|..
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~ 342 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSG 342 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------Cccc
Confidence 45555666543 56889999999877655 7788899999999999999999999999999885 4 2221
Q ss_pred CCcccccceecchhhhhhhccccCCCC-Cccce
Q psy11774 113 DDLVSLDNQWISRASVNQRAGRAGRTK-PGESF 144 (304)
Q Consensus 113 ~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~ 144 (304)
-+...+.-.--.-+.+.|++|||||.+ +|.++
T Consensus 343 l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 343 LHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred ccCcccchHHHHHHHHHHHHhccCCCCCCCEEE
Confidence 111111111113356789999999955 58887
No 98
>KOG0337|consensus
Probab=98.73 E-value=1.2e-08 Score=97.14 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=90.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
+...+||+++...++.+...|...+ +.+--+||++++..|..-+..|..++..+++.|++|.+|++||..+-|||
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g-~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin---- 335 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDFG-GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN---- 335 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhcC-CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc----
Confidence 4579999999999999999998865 77888999999999998899999999999999999999999999999998
Q ss_pred cceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHH
Q psy11774 105 KETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSED 150 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~ 150 (304)
||.+..-..+ .||.||+.|.+ .|..|.+...+
T Consensus 336 ----yd~p~~~klF----------vhRVgr~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 336 ----YDFPPDDKLF----------VHRVGRVARAGRTGRAYSLVAST 368 (529)
T ss_pred ----ccCCCCCceE----------EEEecchhhccccceEEEEEecc
Confidence 6654443333 37888887766 48888886553
No 99
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.64 E-value=4.2e-08 Score=106.20 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=69.8
Q ss_pred CcEEEEcCCH---HHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEe----ccccccCCCCCC-eeE
Q psy11774 26 GAILCFLPGW---QDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLS----TNVAETSITIDD-VAY 97 (304)
Q Consensus 26 g~iLVFlp~~---~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvila----Tniae~sitI~~-V~~ 97 (304)
+..|||+++. +.++.+++.|++.+ +.+..+||+++. ++++.|..|+.+|+|| ||+|.||||||+ |+|
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g-~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~ 401 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHG-VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRY 401 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCC-ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccE
Confidence 4689999999 99999999998865 899999999973 5778889999999999 599999999999 899
Q ss_pred EEeCCCcccee
Q psy11774 98 VVDTGCHKETR 108 (304)
Q Consensus 98 VID~g~~k~~~ 108 (304)
||+.|.++...
T Consensus 402 vI~~~~P~~~~ 412 (1171)
T TIGR01054 402 AVFLGVPKFKV 412 (1171)
T ss_pred EEEECCCCEEE
Confidence 99999998653
No 100
>KOG0953|consensus
Probab=98.62 E-value=1.2e-07 Score=92.93 Aligned_cols=117 Identities=23% Similarity=0.342 Sum_probs=89.8
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHH---hhhhcCCCCCCeEEEEeccccccCCCCCCeeEE
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQ---GAIFGHPPPGMRKVVLSTNVAETSITIDDVAYV 98 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q---~~~~~~~~~g~~kvilaTniae~sitI~~V~~V 98 (304)
.-.+||.+|=+ ++.+|-.+.+.|++.+..++..+||+||++.| ...|.. +.+.-+|+||||...+|+++. |+-|
T Consensus 354 nlk~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd-~~~e~dvlVAsDAIGMGLNL~-IrRi 430 (700)
T KOG0953|consen 354 NLKPGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFND-PSNECDVLVASDAIGMGLNLN-IRRI 430 (700)
T ss_pred cCCCCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCC-CCCccceEEeecccccccccc-eeEE
Confidence 34688877765 58889999999999887789999999999865 334543 567889999999999999986 7766
Q ss_pred EeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC----ccceeccCHH
Q psy11774 99 VDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP----GESFHLYSED 150 (304)
Q Consensus 99 ID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~----G~c~rL~t~~ 150 (304)
|=+.+.| | +.-.+.+++-+++.|-+|||||.+. |..=.|+.++
T Consensus 431 iF~sl~K---y------sg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 431 IFYSLIK---Y------SGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred EEeeccc---C------CcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 6322222 3 2345678999999999999999653 7766666664
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=1.1e-07 Score=99.09 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=62.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID 93 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~ 93 (304)
..+.++|||+.+.+..+.+.+.|.+.+ +....||+.+.+.++..+.+.+.+| .|.||||+|.||+||.
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~g-i~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~ 509 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKEN-IKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIV 509 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCccee
Confidence 346679999999999999999998876 8899999999999999999999988 4999999999999985
No 102
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=7.8e-08 Score=99.79 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=60.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID 93 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~ 93 (304)
..+.++|||+.+.++.+.+.+.|.+.+ +....||+. +.+|...+..+..++..|+||||+|.||+||+
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~g-i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAG-IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCC-CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 345689999999999999999998875 888999996 77888888888888999999999999999986
No 103
>PRK09401 reverse gyrase; Reviewed
Probab=98.56 E-value=6.3e-08 Score=104.82 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=66.5
Q ss_pred CcEEEEcCCHHH---HHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEe----ccccccCCCCCC-eeE
Q psy11774 26 GAILCFLPGWQD---IIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLS----TNVAETSITIDD-VAY 97 (304)
Q Consensus 26 g~iLVFlp~~~e---i~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvila----Tniae~sitI~~-V~~ 97 (304)
+..|||+|+... ++.+.+.|+..+ +.+..+||++ .+.++.|.+|+.+|+|| ||+|.||||||+ |+|
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~g-i~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~Iry 402 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLG-INAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRY 402 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCC-CcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeE
Confidence 469999999777 999999998875 8999999999 22458888999999999 799999999999 899
Q ss_pred EEeCCCccc
Q psy11774 98 VVDTGCHKE 106 (304)
Q Consensus 98 VID~g~~k~ 106 (304)
||+.|.++.
T Consensus 403 VI~y~vP~~ 411 (1176)
T PRK09401 403 AIFYGVPKF 411 (1176)
T ss_pred EEEeCCCCE
Confidence 999999983
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.53 E-value=2.3e-07 Score=96.58 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=61.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~ 93 (304)
.+.+||||+.+.+..+.+.+.|...+ +....||+..+..++..+.+.+.+|. |.||||+|.||.||.
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~g-i~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEK-IPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCC-CCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 45679999999999999999998865 88889999999999999999998886 999999999999985
No 105
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.50 E-value=1e-07 Score=98.34 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=77.6
Q ss_pred EcCCHHHHHHHHHHHhcC-CCcEEEEecCCCCH--HHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccce
Q psy11774 31 FLPGWQDIIQVSRVLSAI-PGLLVTMAHSKLDT--EVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKET 107 (304)
Q Consensus 31 Flp~~~ei~~~~~~L~~~-~~~~v~~lhs~l~~--~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~ 107 (304)
|.+....++.+.+.|.+. ++..+..+|+.+.. +++.++++.|..|+..|+|+|+++++|+|+|+|+.|+-.+
T Consensus 432 l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~----- 506 (679)
T PRK05580 432 LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD----- 506 (679)
T ss_pred eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc-----
Confidence 444445566667777654 66889999999864 5678889999999999999999999999999999885211
Q ss_pred eecCCCCcccccceecchhhhhhhccccCCCC-Ccccee-ccCH
Q psy11774 108 RYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFH-LYSE 149 (304)
Q Consensus 108 ~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~r-L~t~ 149 (304)
.|.......+.-.--.-+.+.|++||+||.+ +|.++- -+..
T Consensus 507 -aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 507 -ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred -CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 1211111111111112356789999999954 598883 3433
No 106
>KOG0353|consensus
Probab=98.46 E-value=3.8e-07 Score=86.03 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=71.5
Q ss_pred cEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccc
Q psy11774 27 AILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKE 106 (304)
Q Consensus 27 ~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~ 106 (304)
.-+|++=++.+.+.+...|+..+ +..-.+|+.|.++++..+-+.+..|+..|||||-....||+-|||+|||.-.++|-
T Consensus 319 sgiiyc~sq~d~ekva~alkn~g-i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ks 397 (695)
T KOG0353|consen 319 SGIIYCFSQKDCEKVAKALKNHG-IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKS 397 (695)
T ss_pred cceEEEeccccHHHHHHHHHhcC-ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchh
Confidence 35677778999999999998876 88999999999999999999899999999999999999999999999999877763
No 107
>KOG0951|consensus
Probab=98.41 E-value=2.1e-06 Score=90.83 Aligned_cols=217 Identities=19% Similarity=0.218 Sum_probs=135.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC------------------------------C------CcEEEEecCCCCHHHHhhh
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI------------------------------P------GLLVTMAHSKLDTEVQGAI 68 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~------------------------------~------~~~v~~lhs~l~~~~q~~~ 68 (304)
++.||||+-+++|..+.++.|++. + .+.+...|+||...+|..+
T Consensus 546 k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~ 625 (1674)
T KOG0951|consen 546 KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELV 625 (1674)
T ss_pred CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHH
Confidence 488999999999999998887510 0 1467788999999999988
Q ss_pred hcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-----Cccc
Q psy11774 69 FGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-----PGES 143 (304)
Q Consensus 69 ~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-----~G~c 143 (304)
..-|..|.++|+++|--.+.|+++|.=+++| -|- .+|||..|.- ..+|.-...||.|||||.+ .|+-
T Consensus 626 EdLf~~g~iqvlvstatlawgvnlpahtVii-kgt---qvy~pekg~w----~elsp~dv~qmlgragrp~~D~~gegii 697 (1674)
T KOG0951|consen 626 EDLFADGHIQVLVSTATLAWGVNLPAHTVII-KGT---QVYDPEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGII 697 (1674)
T ss_pred HHHHhcCceeEEEeehhhhhhcCCCcceEEe-cCc---cccCcccCcc----ccCCHHHHHHHHhhcCCCccCcCCceee
Confidence 8889999999999999999999999655555 343 3699998833 4567888999999999954 3444
Q ss_pred eeccCHHHHh-hhhhcCC--CcccccchHHHHHHhh--cCCCccCCcccccccc------cCC-------------CCCC
Q psy11774 144 FHLYSEDRYR-RMAEYSL--PEIFRKPLEQILLTCK--VGESLYSTERCSSFLS------QLP-------------EPPD 199 (304)
Q Consensus 144 ~rL~t~~~~~-~~~~~~~--pei~r~~L~~~~L~lk--~~~~~~~~~~~~~fl~------~~~-------------~pP~ 199 (304)
+.=+++-.|. .+..++. ++-.-..|.+ +|..- +|+. +-....+|+. +.. +++.
T Consensus 698 it~~se~qyyls~mn~qLpiesq~~~rl~d-~lnaeiv~Gv~--~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~l 774 (1674)
T KOG0951|consen 698 ITDHSELQYYLSLMNQQLPIESQFVSRLAD-CLNAEIVLGVR--SARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLL 774 (1674)
T ss_pred ccCchHhhhhHHhhhhcCCChHHHHHHhhh-hhhhhhhcchh--hHHHHHhhhcceeeEEeeccCchhccCCcccchHHH
Confidence 4444443333 2222221 1111111111 11111 2211 0011122221 001 1121
Q ss_pred ----HHHHHHHHHHHHHcCCcccC---C--CcccchhhhccCCCchhhhHHHHHhhccCCcc
Q psy11774 200 ----PASITSAATELKLMGVFDQE---E--NLTPLGKRIAAMPCHPKLSKALVESVIYKGNC 252 (304)
Q Consensus 200 ----~~~l~~al~~L~~lgald~~---~--~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~~ 252 (304)
.+-+..|.-.|+..|.+--+ | ..|.+|++.+.+.+.-.-....-....-.|.+
T Consensus 775 e~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~ 836 (1674)
T KOG0951|consen 775 EQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSE 836 (1674)
T ss_pred HHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhcc
Confidence 13467888889999888433 2 67899999999887544444444444444544
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.35 E-value=8.7e-07 Score=92.32 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=83.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcC----CCCCCeEEEEeccccccCCCCCCeeEE
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGH----PPPGMRKVVLSTNVAETSITIDDVAYV 98 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~----~~~g~~kvilaTniae~sitI~~V~~V 98 (304)
...+.+||-++|...+.++.+.|++.+. .++.|||.+...+|.+..+. +..+.-.|+|||-+.|.|+||+ .+.+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~m 515 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVL 515 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCee
Confidence 4567899999999999999999998775 89999999999998776652 1345678999999999999997 6666
Q ss_pred EeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---CccceeccC
Q psy11774 99 VDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGESFHLYS 148 (304)
Q Consensus 99 ID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c~rL~t 148 (304)
| +....-.+.+||+||.+|.+ +|..|..-.
T Consensus 516 I--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 516 I--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred e--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 5 23445668889999999987 466655443
No 109
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.31 E-value=2.7e-07 Score=97.06 Aligned_cols=98 Identities=27% Similarity=0.211 Sum_probs=82.5
Q ss_pred CCcEEEEcCCHHHHHHHHHH----HhcCC---CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeE
Q psy11774 25 PGAILCFLPGWQDIIQVSRV----LSAIP---GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAY 97 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~----L~~~~---~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~ 97 (304)
.-..|||+-+++.++.+... +...+ ...+...||++..+++.++...+..|..++++|||.+|-||+|.+++.
T Consensus 306 ~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~lda 385 (851)
T COG1205 306 GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDA 385 (851)
T ss_pred CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhh
Confidence 44699999999999998632 22211 246888999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC
Q psy11774 98 VVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK 139 (304)
Q Consensus 98 VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~ 139 (304)
||..|++- .|..++.||+|||||..
T Consensus 386 vi~~g~P~-----------------~s~~~~~Q~~GRaGR~~ 410 (851)
T COG1205 386 VIAYGYPG-----------------VSVLSFRQRAGRAGRRG 410 (851)
T ss_pred HhhcCCCC-----------------chHHHHHHhhhhccCCC
Confidence 99877642 16678899999999976
No 110
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.28 E-value=2.1e-06 Score=92.70 Aligned_cols=105 Identities=21% Similarity=0.236 Sum_probs=80.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC-----CC---cEEEEecCCCCHHHHhhhhcCCCCCCe-EEEEeccccccCCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI-----PG---LLVTMAHSKLDTEVQGAIFGHPPPGMR-KVVLSTNVAETSITIDD 94 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~-----~~---~~v~~lhs~l~~~~q~~~~~~~~~g~~-kvilaTniae~sitI~~ 94 (304)
.+|..|||+.+.+.++.+.+.|.+. ++ ..+..+||+.+. +.++++.|.++.. +|+++++++.+|+|+|+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3588999999999999988887642 22 256678888753 4557777776665 79999999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC--cc-ceeccC
Q psy11774 95 VAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP--GE-SFHLYS 148 (304)
Q Consensus 95 V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~--G~-c~rL~t 148 (304)
|..||- +. ..-|+..+.||.||+.|.++ |+ +|.++.
T Consensus 775 v~~vVf--------~r----------pvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 775 ICNLVF--------LR----------RVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ccEEEE--------ec----------CCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 999993 22 12377888999999999988 44 445554
No 111
>KOG4150|consensus
Probab=98.24 E-value=8e-07 Score=87.58 Aligned_cols=97 Identities=26% Similarity=0.200 Sum_probs=79.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhc----C-CCc--EEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSA----I-PGL--LVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAY 97 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~----~-~~~--~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~ 97 (304)
+-+.+.|+|++.-++.+....++ . +.+ .|..+.||...++|.++....-.|+.+-|+|||.+|-||+|.+.+.
T Consensus 525 ~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDA 604 (1034)
T KOG4150|consen 525 GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDA 604 (1034)
T ss_pred CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccccccee
Confidence 44689999999888776554432 1 221 4566889999999999887777789999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC
Q psy11774 98 VVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK 139 (304)
Q Consensus 98 VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~ 139 (304)
|+.+|++ -|-++..|..|||||..
T Consensus 605 Vl~~GFP------------------~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 605 VLHLGFP------------------GSIANLWQQAGRAGRRN 628 (1034)
T ss_pred EEEccCc------------------hhHHHHHHHhccccccC
Confidence 9999975 48889999999999954
No 112
>KOG0950|consensus
Probab=98.23 E-value=1.4e-06 Score=90.09 Aligned_cols=113 Identities=21% Similarity=0.332 Sum_probs=90.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhc--------------------------CC-----------CcEEEEecCCCCHHHHhh
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSA--------------------------IP-----------GLLVTMAHSKLDTEVQGA 67 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~--------------------------~~-----------~~~v~~lhs~l~~~~q~~ 67 (304)
..++|||+|++..++.++..+.. .+ ..-+...|+|++.++|..
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 34599999999999988765510 00 135666899999999999
Q ss_pred hhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC---ccce
Q psy11774 68 IFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP---GESF 144 (304)
Q Consensus 68 ~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~---G~c~ 144 (304)
+-..++.|-.+|++||+....|++.|-.+++|-.- .......++.+|.|+.|||||++- |.++
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP--------------~~g~~~l~~~~YkQM~GRAGR~gidT~Gdsi 605 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAP--------------YVGREFLTRLEYKQMVGRAGRTGIDTLGDSI 605 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccCcCCcceeEEeCC--------------ccccchhhhhhHHhhhhhhhhcccccCcceE
Confidence 88899999999999999999999999999888321 123345688999999999999863 8899
Q ss_pred eccCHHH
Q psy11774 145 HLYSEDR 151 (304)
Q Consensus 145 rL~t~~~ 151 (304)
-++.+.+
T Consensus 606 LI~k~~e 612 (1008)
T KOG0950|consen 606 LIIKSSE 612 (1008)
T ss_pred EEeeccc
Confidence 8887755
No 113
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.13 E-value=5.3e-06 Score=81.66 Aligned_cols=97 Identities=21% Similarity=0.205 Sum_probs=83.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
....++||....+..+.+...+...+ . +..+.+..+.++|..+++.|+.|..++++++.|+..|+|+|++.++|-.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~-~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~-- 357 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPG-I-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIIL-- 357 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCC-c-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEe--
Confidence 35579999999999999999987655 3 7889999999999999999999889999999999999999999999931
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCC
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP 140 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~ 140 (304)
.-.-|+..+.||.||.=|..+
T Consensus 358 ----------------~~t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 358 ----------------RPTGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred ----------------CCCCcHHHHHHHhhhhccCCC
Confidence 112377889999999988443
No 114
>KOG0948|consensus
Probab=97.97 E-value=3.3e-06 Score=85.50 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=85.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-----------------------------CCc---------EEEEecCCCCHHHHh
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-----------------------------PGL---------LVTMAHSKLDTEVQG 66 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-----------------------------~~~---------~v~~lhs~l~~~~q~ 66 (304)
-.+++||.=+++|++..+-.+.+. |.+ -+-..||||-+--..
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE 462 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKE 462 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHH
Confidence 457999999999999887665211 111 355579998775444
Q ss_pred hhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---Cccc
Q psy11774 67 AIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGES 143 (304)
Q Consensus 67 ~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c 143 (304)
-+.--|..|-.||++||-....|+++|--++|. ......+.-..+|||-.+|+|++|||||-| .|+|
T Consensus 463 ~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----------T~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGiv 532 (1041)
T KOG0948|consen 463 VIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----------TAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIV 532 (1041)
T ss_pred HHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----------eeccccCCcceeeecccceEEecccccccCCCCCceE
Confidence 333346789999999999999999999544443 233333444569999999999999999966 3999
Q ss_pred eeccCHH
Q psy11774 144 FHLYSED 150 (304)
Q Consensus 144 ~rL~t~~ 150 (304)
+.+.++.
T Consensus 533 IlmiDek 539 (1041)
T KOG0948|consen 533 ILMIDEK 539 (1041)
T ss_pred EEEecCc
Confidence 9998864
No 115
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.74 E-value=7.8e-05 Score=79.85 Aligned_cols=111 Identities=17% Similarity=0.058 Sum_probs=84.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCC---CCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPP---GMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~---g~~kvilaTniae~sitI~~V~~VID 100 (304)
.+..||||.--..-++.+.+.|...+ +.++.+||+++.++|..+++.|.. +..-+++||..+..||++...++||.
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g-~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRG-YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcC-CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 35679999887777777777776554 788999999999999999888843 33467899999999999999999996
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCC---CCccceeccCHHHHh
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRT---KPGESFHLYSEDRYR 153 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~---~~G~c~rL~t~~~~~ 153 (304)
||+.=+ -+...|+.||+-|- .+=.+|+|+++...+
T Consensus 565 --------yD~dWN----------P~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 565 --------YDSDWN----------PQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred --------eCCCCC----------hHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 665422 23345666666654 445689999987654
No 116
>KOG0952|consensus
Probab=97.66 E-value=0.00016 Score=75.99 Aligned_cols=119 Identities=20% Similarity=0.222 Sum_probs=89.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC-------------C--C-------cEEEEecCCCCHHHHhhhhcCCCCCCeEEEE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI-------------P--G-------LLVTMAHSKLDTEVQGAIFGHPPPGMRKVVL 81 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~-------------~--~-------~~v~~lhs~l~~~~q~~~~~~~~~g~~kvil 81 (304)
.+..++||++++.+..+.++.|.+. + + .-+..-|+||..++|.-+-.-|..|..+|++
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~ 427 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLC 427 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEE
Confidence 3567999999999999998888421 0 0 2345579999999999888889999999999
Q ss_pred eccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---CccceeccCHH
Q psy11774 82 STNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGESFHLYSED 150 (304)
Q Consensus 82 aTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c~rL~t~~ 150 (304)
||.-+.-|+++|. ..||--| .+.||+..|.- +-.+-....|--|||||-+ .|..+-+-+.+
T Consensus 428 cTaTLAwGVNLPA-~aViIKG---T~~ydsskg~f----~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 428 CTATLAWGVNLPA-YAVIIKG---TQVYDSSKGSF----VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred ecceeeeccCCcc-eEEEecC---CcccccccCce----eeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 9999999999996 4455434 44688887633 2234456779999999943 47777766654
No 117
>KOG0947|consensus
Probab=97.65 E-value=6.3e-05 Score=78.21 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=82.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-----------------------------CC---------cEEEEecCCCCHHHHh
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-----------------------------PG---------LLVTMAHSKLDTEVQG 66 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-----------------------------~~---------~~v~~lhs~l~~~~q~ 66 (304)
-=+++||+=++.-++..++.|... |+ =-+...|||+-+--..
T Consensus 567 lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE 646 (1248)
T KOG0947|consen 567 LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKE 646 (1248)
T ss_pred cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHH
Confidence 446899999999999998888311 11 0356678998776655
Q ss_pred hhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---Cccc
Q psy11774 67 AIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGES 143 (304)
Q Consensus 67 ~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c 143 (304)
-+..-|..|-.||++||-....|+++|--++|+|+ +.| .| .-..+-+.-.+|.|++|||||-+ .|.+
T Consensus 647 ~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S-l~K---hD------G~efR~L~PGEytQMAGRAGRRGlD~tGTV 716 (1248)
T KOG0947|consen 647 VVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS-LRK---HD------GNEFRELLPGEYTQMAGRAGRRGLDETGTV 716 (1248)
T ss_pred HHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee-hhh---cc------CcceeecCChhHHhhhccccccccCcCceE
Confidence 55555678999999999999999999977777763 222 12 11234567789999999999965 3887
Q ss_pred eeccCH
Q psy11774 144 FHLYSE 149 (304)
Q Consensus 144 ~rL~t~ 149 (304)
+.+.+.
T Consensus 717 ii~~~~ 722 (1248)
T KOG0947|consen 717 IIMCKD 722 (1248)
T ss_pred EEEecC
Confidence 766554
No 118
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.64 E-value=0.00017 Score=75.17 Aligned_cols=104 Identities=25% Similarity=0.209 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCee-------
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVA------- 96 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~------- 96 (304)
.+.+|||...+.+.-+.+.+.|.+.+ +..-.|++.-...+-.-+-++.. ...|.||||.|.||.||.=-.
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~e~EA~IIa~AG~--~GaVTIATNMAGRGTDI~Lg~~V~~~GG 501 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEAN-IPHTVLNAKQNAREAEIIAKAGQ--KGAITIATNMAGRGTDIKLSKEVLELGG 501 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCC-CCceeecccchhhHHHHHHhCCC--CCeEEEecccccCCcCccCchhHHHcCC
Confidence 45679999999999999999998764 55566766533222222223333 347999999999999986222
Q ss_pred -EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccC
Q psy11774 97 -YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYS 148 (304)
Q Consensus 97 -~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t 148 (304)
|||-+.... |+--=.|-.||+||.| ||.+-.+.|
T Consensus 502 LhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 502 LYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred cEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEe
Confidence 666544321 2222248999999988 587644444
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.00014 Score=71.72 Aligned_cols=111 Identities=19% Similarity=0.187 Sum_probs=94.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
.+..+||-.=|++-.+.+.+.|.+.+ +++-.+||.+..-+|.+++...+.|...|+|--|++--|+|||.|..|--
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~g-ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI--- 520 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELG-IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--- 520 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcC-ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE---
Confidence 45789999999999999999999987 99999999999999999999999999999999999999999999998873
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccC
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYS 148 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t 148 (304)
.|...- ...-|..|.+|=.|||.|.-.|+++....
T Consensus 521 -----lDADKe-----GFLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 521 -----LDADKE-----GFLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred -----eecCcc-----ccccccchHHHHHHHHhhccCCeEEEEch
Confidence 333211 11236778899999999999999875433
No 120
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.44 E-value=0.00038 Score=71.57 Aligned_cols=106 Identities=27% Similarity=0.242 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC----------
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID---------- 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~---------- 93 (304)
.+.+|||...+.++.+.+.+.|.+.+ +....|++.-...|-.-+-++..+ ..|.||||.|.||-||.
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~g-I~h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~ 502 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAAG-VPAVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRD 502 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhCC-CcceeeccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchH
Confidence 45679999999999999999998765 666777776443332223333333 37999999999999975
Q ss_pred Ce-----eEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHH
Q psy11774 94 DV-----AYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSED 150 (304)
Q Consensus 94 ~V-----~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~ 150 (304)
+| =+||-+... -|+--=.|=.||+||.+ ||.+-.+.|-+
T Consensus 503 ~V~~~GGLhVIgTerh------------------eSrRID~QLrGRaGRQGDpGss~f~lSle 547 (764)
T PRK12326 503 RVAELGGLHVIGTGRH------------------RSERLDNQLRGRAGRQGDPGSSVFFVSLE 547 (764)
T ss_pred HHHHcCCcEEEeccCC------------------chHHHHHHHhcccccCCCCCceeEEEEcc
Confidence 11 255533322 23333458899999988 58876665543
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.17 E-value=0.001 Score=70.78 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCee--EE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVA--YV 98 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~--~V 98 (304)
.+|.+|||+|+.+.++.+.+.|... .++.++. .+.. ..+.++++.|..++..|+++|+.+..|||+|+.. .|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEE
Confidence 4689999999999999999998652 2233332 2322 3566777777778889999999999999999766 56
Q ss_pred EeCCCccceeecCC----------CCcccccc--eecchhhhhhhccccCCCCC--ccceec
Q psy11774 99 VDTGCHKETRYNSK----------DDLVSLDN--QWISRASVNQRAGRAGRTKP--GESFHL 146 (304)
Q Consensus 99 ID~g~~k~~~yd~~----------~~~~~l~~--~~isk~~~~QR~GRaGR~~~--G~c~rL 146 (304)
|=.|++-..--||. .|-..+.. .|-.--...|-.||.=|+.. |..+.|
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 65676532111110 01111111 12233457789999988764 776654
No 122
>KOG0329|consensus
Probab=96.88 E-value=0.00036 Score=63.21 Aligned_cols=53 Identities=25% Similarity=0.434 Sum_probs=44.8
Q ss_pred EEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHH
Q psy11774 80 VLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSED 150 (304)
Q Consensus 80 ilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~ 150 (304)
++|||+..+|++|..|..|+| ||.+.+.. +|.||.|||||.+. |..+.+.+.+
T Consensus 302 ~vat~lfgrgmdiervNi~~N--------Ydmp~~~D----------tYlHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFN--------YDMPEDSD----------TYLHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred hHHhhhhccccCcccceeeec--------cCCCCCch----------HHHHHhhhhhccccccceeehhcch
Confidence 899999999999999999998 77665544 56699999999886 8888776654
No 123
>KOG1123|consensus
Probab=96.83 E-value=0.0026 Score=62.66 Aligned_cols=105 Identities=20% Similarity=0.218 Sum_probs=72.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCC-eEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGM-RKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~-~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
+..|+||-...-.....+-.|.+ + -+||..++.+|.++++.|..+. .+-|+-.-++.+||++|..++.|.
T Consensus 543 gDKiIVFsDnvfALk~YAikl~K-p-----fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQ--- 613 (776)
T KOG1123|consen 543 GDKIIVFSDNVFALKEYAIKLGK-P-----FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQ--- 613 (776)
T ss_pred CCeEEEEeccHHHHHHHHHHcCC-c-----eEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEE---
Confidence 34599998776655555444432 1 2579999999999999987653 466777789999999999999995
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCC-------ccceeccCHHHH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-------GESFHLYSEDRY 152 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-------G~c~rL~t~~~~ 152 (304)
..... -|+-+-.||.||.=|... ...|.|.+++.-
T Consensus 614 -----ISSH~---------GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 614 -----ISSHG---------GSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred -----Ecccc---------cchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 11111 256667799998766433 235666666543
No 124
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.82 E-value=0.0025 Score=67.26 Aligned_cols=105 Identities=26% Similarity=0.216 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCC---e-----
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD---V----- 95 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~---V----- 95 (304)
.+.+|||-..+.+.-+.+.+.|.+.+ +....|++.-...|-.-+-+...+ ..|.||||.|.||-||.= |
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~g-i~h~vLNak~~~~Ea~iia~AG~~--g~VTIATNmAGRGTDIkl~~~v~~~GG 643 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNR-IEHTVLNAKNHAQEAEIIAGAGKL--GAVTVATNMAGRGTDIKLDEEAVAVGG 643 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcC-CcceecccchhhhHHHHHHhcCCC--CcEEEeeccccCCcccccCchHHhcCC
Confidence 34569999999999999999998765 555666665333332223333333 479999999999999741 1
Q ss_pred eEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCH
Q psy11774 96 AYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSE 149 (304)
Q Consensus 96 ~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~ 149 (304)
-+||-+.+. -|+---.|=.||+||.| ||.+-.+.|-
T Consensus 644 LhVIgTer~------------------es~Rid~Ql~GRagRQGdpGss~f~lSl 680 (970)
T PRK12899 644 LYVIGTSRH------------------QSRRIDRQLRGRCARLGDPGAAKFFLSF 680 (970)
T ss_pred cEEEeeccC------------------chHHHHHHHhcccccCCCCCceeEEEEc
Confidence 145543322 23334468999999988 5987655554
No 125
>KOG0391|consensus
Probab=96.77 E-value=0.004 Score=66.49 Aligned_cols=115 Identities=21% Similarity=0.176 Sum_probs=90.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCe--EEEEeccccccCCCCCCeeEEEe
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMR--KVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~--kvilaTniae~sitI~~V~~VID 100 (304)
..+.++|||.--..-.+.+...|..++ +..+-|-|+...++|+..+++|....| ..|++|--...||++-+.+.||
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyHg-ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVv- 1351 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYHG-YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVV- 1351 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhcc-eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEE-
Confidence 346789999766655555555555544 888899999999999999999977654 5699999999999999999999
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
.||..-+ |.=-+++.-|.-|.|+++.=+.|||.++..-+
T Consensus 1352 -------FYDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1352 -------FYDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred -------EecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 5775533 22235677799999999999999999987654
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.71 E-value=0.0025 Score=67.16 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=46.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~ 93 (304)
.+-+|||-..+.+.-+.+.+.|.+.+ +..-.|.+.-...|-.-+-+...+ ..|.||||.|.||-||.
T Consensus 448 ~GrPVLVGT~SVe~SE~ls~~L~~~g-i~h~VLNAk~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDIk 514 (913)
T PRK13103 448 LGRPVLVGTATIETSEHMSNLLKKEG-IEHKVLNAKYHEKEAEIIAQAGRP--GALTIATNMAGRGTDIL 514 (913)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcC-CcHHHhccccchhHHHHHHcCCCC--CcEEEeccCCCCCCCEe
Confidence 45679999999999999999998764 444445555333332323333333 47999999999999983
No 127
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.69 E-value=0.0018 Score=55.33 Aligned_cols=119 Identities=17% Similarity=0.195 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCC---CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc--ccccCCCCCC--ee
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIP---GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN--VAETSITIDD--VA 96 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~---~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn--iae~sitI~~--V~ 96 (304)
.+|.+|||+|+.+.++.+.+.+.+.. ++.++.= + ..+..++++.+..+..-|++++. -..-|||++| .+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 36999999999999999999987643 2322222 2 34455566666667788999998 8889999986 77
Q ss_pred EEEeCCCccceeecCCCCc------------ccccceecchhhhhhhccccCCCCC--ccceec
Q psy11774 97 YVVDTGCHKETRYNSKDDL------------VSLDNQWISRASVNQRAGRAGRTKP--GESFHL 146 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~------------~~l~~~~isk~~~~QR~GRaGR~~~--G~c~rL 146 (304)
.||=.|++-....|+.... ......+-.--...|=.||+=|+.. |..+-+
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 8888888743322222110 0011122222356788999988776 665543
No 128
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.69 E-value=0.0028 Score=67.37 Aligned_cols=104 Identities=26% Similarity=0.257 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC--------Ce
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID--------DV 95 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~--------~V 95 (304)
.+.+|||-..+.+.-+.+.+.|...+ +..-.|.+.....|-.-+-++..+| .|-||||.|.||-||. |=
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~g-I~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GG 703 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRK-IPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGG 703 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcC-CcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCC
Confidence 45679999999999999999997754 4444455553333333333444443 6999999999999986 22
Q ss_pred eEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccC
Q psy11774 96 AYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYS 148 (304)
Q Consensus 96 ~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t 148 (304)
-+||-+... -|+--=.|=.|||||.| ||.+-.+.|
T Consensus 704 L~VIgTerh------------------eSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 704 LAIIGTERH------------------ESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred CEEEEccCC------------------CcHHHHHHHhcccccCCCCCcceEEEE
Confidence 355543332 23333458999999988 588644444
No 129
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.0012 Score=70.46 Aligned_cols=113 Identities=22% Similarity=0.316 Sum_probs=84.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC------------------------------C-Cc---------EEEEecCCCCHHH
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI------------------------------P-GL---------LVTMAHSKLDTEV 64 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~------------------------------~-~~---------~v~~lhs~l~~~~ 64 (304)
--.+++|.=++.+++..+..+... + ++ -+...|++|=+..
T Consensus 379 ~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~ 458 (1041)
T COG4581 379 LLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAI 458 (1041)
T ss_pred CCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHH
Confidence 345888888888888877765310 1 00 1234689999988
Q ss_pred HhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---Cc
Q psy11774 65 QGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PG 141 (304)
Q Consensus 65 q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G 141 (304)
+..+-+-|..|-.||++||-....|+++| ++.||=+++.| +| .-..+|++..+|.|.+|||||.+ .|
T Consensus 459 K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artvv~~~l~K---~d------G~~~r~L~~gEy~QmsGRAGRRGlD~~G 528 (1041)
T COG4581 459 KELVEELFQEGLVKVVFATETFAIGINMP-ARTVVFTSLSK---FD------GNGHRWLSPGEYTQMSGRAGRRGLDVLG 528 (1041)
T ss_pred HHHHHHHHhccceeEEeehhhhhhhcCCc-ccceeeeeeEE---ec------CCceeecChhHHHHhhhhhccccccccc
Confidence 88887778899999999999999999999 56666455544 43 22458999999999999999966 38
Q ss_pred cceecc
Q psy11774 142 ESFHLY 147 (304)
Q Consensus 142 ~c~rL~ 147 (304)
..+.+.
T Consensus 529 ~vI~~~ 534 (1041)
T COG4581 529 TVIVIE 534 (1041)
T ss_pred eEEEec
Confidence 888773
No 130
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.50 E-value=0.028 Score=58.54 Aligned_cols=133 Identities=18% Similarity=0.257 Sum_probs=89.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC----CCcEEEEecCCCCHHHH-hhhhcCCCCCCeEEEEeccccccCCCCCCeeEEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI----PGLLVTMAHSKLDTEVQ-GAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV 99 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~----~~~~v~~lhs~l~~~~q-~~~~~~~~~g~~kvilaTniae~sitI~~V~~VI 99 (304)
.|..|||..+....+.+.+.+... ++-.+..+-+.-....+ ...|.. ++..-+|.++-+++.|||++|.|..+|
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeee
Confidence 567999999999999999999643 21234444444333322 233433 233458999999999999999999887
Q ss_pred eCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC--c-----c-ceeccCH---HHHhhhhhcCCCcccccch
Q psy11774 100 DTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP--G-----E-SFHLYSE---DRYRRMAEYSLPEIFRKPL 168 (304)
Q Consensus 100 D~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~--G-----~-c~rL~t~---~~~~~~~~~~~pei~r~~L 168 (304)
|+-.. -||..++|+.||.-|.++ | + .|.++.- -.|-.+.+...+.-.+..+
T Consensus 505 ---------F~r~V---------rSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l 566 (875)
T COG4096 505 ---------FDRKV---------RSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSL 566 (875)
T ss_pred ---------ehhhh---------hhHHHHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchH
Confidence 33222 288999999999999876 4 2 2334332 2233566666777777777
Q ss_pred HHHHHHhh
Q psy11774 169 EQILLTCK 176 (304)
Q Consensus 169 ~~~~L~lk 176 (304)
+.-++...
T Consensus 567 ~~rLF~~~ 574 (875)
T COG4096 567 EQRLFADR 574 (875)
T ss_pred HHHHhhhh
Confidence 76666555
No 131
>KOG0385|consensus
Probab=96.48 E-value=0.01 Score=61.03 Aligned_cols=112 Identities=18% Similarity=0.181 Sum_probs=82.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCC---CeEEEEeccccccCCCCCCee
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPG---MRKVVLSTNVAETSITIDDVA 96 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g---~~kvilaTniae~sitI~~V~ 96 (304)
..+..||+|-- +-.+.+.|+. ..++..+-+-|+++.++|..+++.|... +--.+|+|=...-||++-..+
T Consensus 485 ~~GhRVLIFSQ----mt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aAD 560 (971)
T KOG0385|consen 485 EQGHRVLIFSQ----MTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAAD 560 (971)
T ss_pred hCCCeEEEeHH----HHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccccc
Confidence 34567999943 3334444443 2458999999999999998888776443 344688999999999999999
Q ss_pred EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 97 YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
.||= ||..=+- -.=-+|.+|+-|.|...+=++|||.|++.-+
T Consensus 561 tVIl--------yDSDWNP-------Q~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 561 TVIL--------YDSDWNP-------QVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred EEEE--------ecCCCCc-------hhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 9993 5443221 1224688999999999999999999987654
No 132
>KOG0384|consensus
Probab=96.40 E-value=0.0054 Score=65.73 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=97.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCC---CCCeEEEEeccccccCCCCCCeeEEE-
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPP---PGMRKVVLSTNVAETSITIDDVAYVV- 99 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~---~g~~kvilaTniae~sitI~~V~~VI- 99 (304)
.+..||||---..-.+.+.+.|..++ +...-|-|++..+.|+.++..|. ...--.+|||=...-||++-..+.||
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~-ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRG-YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcC-CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 45679999766666666666665544 78888999999999999887653 34567899999999999999998888
Q ss_pred -eCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh-hhhhcCCCcccccchHHHHHHhh
Q psy11774 100 -DTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR-RMAEYSLPEIFRKPLEQILLTCK 176 (304)
Q Consensus 100 -D~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~-~~~~~~~pei~r~~L~~~~L~lk 176 (304)
||. |||.+.+ +|.-|+-|.|....=.+|||.|+..|+ .+-+..- +..-|+.+|||.-
T Consensus 777 FDSD------WNPQNDL-----------QAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk---~KmvLD~aVIQ~m 835 (1373)
T KOG0384|consen 777 FDSD------WNPQNDL-----------QAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAK---LKMVLDHAVIQRM 835 (1373)
T ss_pred eCCC------CCcchHH-----------HHHHHHHhhcccceEEEEEEecCCchHHHHHHHHH---HHhhhHHHHHHhh
Confidence 322 5555543 455699999988778899999999887 3332211 2345778888765
No 133
>KOG0392|consensus
Probab=96.34 E-value=0.01 Score=63.73 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=87.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhc--CCCcEEEEecCCCCHHHHhhhhcCCCCC-CeE-EEEeccccccCCCCCCeeEEEe
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSA--IPGLLVTMAHSKLDTEVQGAIFGHPPPG-MRK-VVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~--~~~~~v~~lhs~l~~~~q~~~~~~~~~g-~~k-vilaTniae~sitI~~V~~VID 100 (304)
..+||||+-=+.-++-+.+-|-+ .+.+....|-|++++.+|.++.++|.++ ... .+++|-+..-|+++-|.+.||=
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 45799999988888877776643 3667778999999999999999999887 344 5778999999999999999991
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
. +--|||-.. -+|.-|+-|.|..+-=-+|||+|+...+
T Consensus 1420 ---v-EHDWNPMrD-----------LQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1420 ---V-EHDWNPMRD-----------LQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred ---E-ecCCCchhh-----------HHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 0 001333322 3567788888887777799999987655
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.29 E-value=0.012 Score=61.94 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=48.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCC--HHHHhhhhcCCCCCCeEEEEeccccccCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLD--TEVQGAIFGHPPPGMRKVVLSTNVAETSITI 92 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~--~~~q~~~~~~~~~g~~kvilaTniae~sitI 92 (304)
..+.+|||-..+.+.-+.+.+.|.+.+ +..-.|++.-. ..|-.-+-++..+ ..|.||||.|.||.||
T Consensus 422 ~~grPVLIgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRGTDI 490 (870)
T CHL00122 422 QTGRPILIGTTTIEKSELLSQLLKEYR-LPHQLLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRGTDI 490 (870)
T ss_pred hcCCCEEEeeCCHHHHHHHHHHHHHcC-CccceeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCCcCe
Confidence 345679999999999999999998765 66667777521 2232323334333 3799999999999887
No 135
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.15 E-value=0.016 Score=61.94 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=62.2
Q ss_pred EEEcCCHHHHHHHHHHHhcC-----CCcEEEEecCCCCHHHHhhhh-------cC-------------------CCCCCe
Q psy11774 29 LCFLPGWQDIIQVSRVLSAI-----PGLLVTMAHSKLDTEVQGAIF-------GH-------------------PPPGMR 77 (304)
Q Consensus 29 LVFlp~~~ei~~~~~~L~~~-----~~~~v~~lhs~l~~~~q~~~~-------~~-------------------~~~g~~ 77 (304)
||=+.+.+..-.+++.|-.. ..+.++.+||..+...|.... ++ +..+..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 55566666666666665322 347789999998666553322 11 123467
Q ss_pred EEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCcc
Q psy11774 78 KVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGE 142 (304)
Q Consensus 78 kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~ 142 (304)
.|||||.|.|.|+||+ .+.+| ..+.+-.+.+||+||..|.+.+.
T Consensus 840 ~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred eEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhcccccccCC
Confidence 8999999999999987 34443 13446667889999999976544
No 136
>KOG0389|consensus
Probab=95.98 E-value=0.026 Score=58.29 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=83.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCC--eEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGM--RKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~--~kvilaTniae~sitI~~V~~VID~g 102 (304)
+..||+|--=..-.+.+--.|... ++..+-|-|+....+|+.++..|...+ --.++||-...-||++-..+.||-..
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l-~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD 855 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTL-GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHD 855 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhc-CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEee
Confidence 466999954443333333334444 489999999999999999998886654 35689999999999999988888322
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
. .|||... -+|+-|+-|+|.++|=..|||.|+..-+
T Consensus 856 ~----dFNP~dD-----------~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 856 I----DFNPYDD-----------KQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred c----CCCCccc-----------chhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 1 1444433 3677899999999999999999997544
No 137
>KOG0387|consensus
Probab=95.80 E-value=0.041 Score=56.95 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=92.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCe--EEEEeccccccCCCCCCeeEEEeCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMR--KVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~--kvilaTniae~sitI~~V~~VID~g 102 (304)
+..+|+|--++.-++.+...|...+++.++-+-|..+...|+...+.|..+.. -.+++|-+..-|+++-+.+-||
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVI--- 622 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVI--- 622 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEE---
Confidence 44799999999999888888886667999999999999999999999876643 4578899999999999888777
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
.|||.=+-+ +=.+|.-|+-|.|..+.=++|||.+...-+
T Consensus 623 -----IfDPdWNPS-------tD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 623 -----IFDPDWNPS-------TDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred -----EECCCCCCc-------cchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 366654422 334677799999998888899999875443
No 138
>KOG0949|consensus
Probab=95.78 E-value=0.02 Score=60.38 Aligned_cols=97 Identities=24% Similarity=0.302 Sum_probs=68.2
Q ss_pred EEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhc
Q psy11774 53 VTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRA 132 (304)
Q Consensus 53 v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~ 132 (304)
+-..|++|...+|..+.--|+.|.-.|++||..+.-||++| .+.||=.| .+|.. +--+|.|++
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMP-CrTVvF~g-------------DsLQL---~plny~Qma 1027 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMP-CRTVVFAG-------------DSLQL---DPLNYKQMA 1027 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCC-ceeEEEec-------------ccccc---CchhHHhhh
Confidence 45579999999998777778899999999999999999999 44444222 22332 334688999
Q ss_pred cccCCCC---Cccceec-cCHHHHhhhhhcCCCccccc
Q psy11774 133 GRAGRTK---PGESFHL-YSEDRYRRMAEYSLPEIFRK 166 (304)
Q Consensus 133 GRaGR~~---~G~c~rL-~t~~~~~~~~~~~~pei~r~ 166 (304)
|||||-+ -|.+..+ .+...-..+--...|.|+-.
T Consensus 1028 GRAGRRGFD~lGnV~FmgiP~~kv~rLlts~L~diqG~ 1065 (1330)
T KOG0949|consen 1028 GRAGRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQGA 1065 (1330)
T ss_pred ccccccccccccceEEEeCcHHHHHHHHHHhhhcccCC
Confidence 9999965 2665554 45544445555556666544
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.28 E-value=0.076 Score=57.18 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=88.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCC---cEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCC--eeEE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPG---LLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD--VAYV 98 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~---~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~--V~~V 98 (304)
.+|.+|||+|+.+.++.+.+.|..... +.++. . ++....+.++.+.|..+...|+++|+-.--|||+|| +..|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEE
Confidence 478999999999999999999975421 22222 2 332233455556666677789999999999999996 4778
Q ss_pred EeCCCccceeecCCCC--------------cccccc--eecchhhhhhhccccCCCCC--ccceecc---CHHHHhhhhh
Q psy11774 99 VDTGCHKETRYNSKDD--------------LVSLDN--QWISRASVNQRAGRAGRTKP--GESFHLY---SEDRYRRMAE 157 (304)
Q Consensus 99 ID~g~~k~~~yd~~~~--------------~~~l~~--~~isk~~~~QR~GRaGR~~~--G~c~rL~---t~~~~~~~~~ 157 (304)
|=.+++ |.+++. -+.+.. .|-.--...|=.||.=|+.. |..+.|= ....|...-.
T Consensus 829 iI~kLP----F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l 904 (928)
T PRK08074 829 VIVRLP----FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFL 904 (928)
T ss_pred EEecCC----CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHH
Confidence 766765 322221 111111 12233456788899877664 8766431 1234542223
Q ss_pred cCCCc--ccccchHHHHHHhh
Q psy11774 158 YSLPE--IFRKPLEQILLTCK 176 (304)
Q Consensus 158 ~~~pe--i~r~~L~~~~L~lk 176 (304)
...|. +.+.++.++.-.++
T Consensus 905 ~sLP~~~~~~~~~~~~~~~~~ 925 (928)
T PRK08074 905 ESLPTVPVYEGTLEELLEEVE 925 (928)
T ss_pred HhCCCCCcccCCHHHHHHHHH
Confidence 33333 33346666544443
No 140
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.92 E-value=0.072 Score=56.12 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=91.4
Q ss_pred cEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCC--CeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 27 AILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPG--MRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 27 ~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g--~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
.+|+|.+-..-.+.+...+...+ +.+.-++|+++.++|...+..|..+ ..-.+++|-.+..|++.-..+.||-
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~-~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~---- 787 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG-IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL---- 787 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC-CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE----
Confidence 69999999999988888888776 7899999999999999998888764 5567888889999999999999994
Q ss_pred cceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 105 KETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
||+.-+ |.-..+|..|+-|.|+.++=..|++.+++..+
T Consensus 788 ----~d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 788 ----FDPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred ----eccccC-------hHHHHHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 665433 22345677799999999899999999987644
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=94.68 E-value=0.11 Score=55.01 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=46.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCC-CC-HHHHhhhhcCCCCCCeEEEEeccccccCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSK-LD-TEVQGAIFGHPPPGMRKVVLSTNVAETSITID 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~-l~-~~~q~~~~~~~~~g~~kvilaTniae~sitI~ 93 (304)
.+.+|||-..+.+.-+.+.+.|...+ +..-.|++. .. ..|-.-+-++... ..|-||||.|.||-||.
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQG-IPHNLLNAKPENVEREAEIVAQAGRK--GAVTIATNMAGRGTDII 506 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcC-CchheeeCCCcchHhHHHHHHhcCCC--CcEEEeccCCCCCcCEe
Confidence 45679999999999999999998765 555556664 11 2222222233333 37999999999998863
No 142
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.57 E-value=0.063 Score=55.87 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=60.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV 99 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VI 99 (304)
++.+||.+|+.+.+.++.+.+++.-+..+..+||+++..++.+.+.....|..+|||+|.-+- -+.+.++..||
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liV 263 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLII 263 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEE
Confidence 567999999999999999999775447899999999999998888777778889999997443 25567777666
No 143
>KOG0390|consensus
Probab=94.25 E-value=0.2 Score=52.39 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=83.2
Q ss_pred cEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCC--CC-eEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 27 AILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPP--GM-RKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 27 ~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~--g~-~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
.-.|.+........+.+.+-...+..++.|||.++..+|+++++.|.+ +. .-.++||-...-||++=+..-||=
T Consensus 596 ~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil--- 672 (776)
T KOG0390|consen 596 VKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL--- 672 (776)
T ss_pred eEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE---
Confidence 455666777777777777666557999999999999999999877643 23 445677888899999888777773
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDR 151 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~ 151 (304)
||+.=+ |..-.+|+-|+-|-|..++-..|||.+...
T Consensus 673 -----~D~dWN-------Pa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 673 -----FDPDWN-------PAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred -----eCCCCC-------chhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 555432 334467888999999999999999988754
No 144
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.16 E-value=0.086 Score=52.96 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=60.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV 99 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VI 99 (304)
++.+||-+|+.+-+.++.+.|++.-+..+..+||+++..++.+.+.....|..+|||+|.-+-. ..+.++..||
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lII 98 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLII 98 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEE
Confidence 5679999999999999999998754467889999999999988888777788899999975432 4567777665
No 145
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.68 E-value=0.21 Score=52.18 Aligned_cols=111 Identities=23% Similarity=0.309 Sum_probs=72.7
Q ss_pred cEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHH--HhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEE----e
Q psy11774 27 AILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEV--QGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV----D 100 (304)
Q Consensus 27 ~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~--q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VI----D 100 (304)
.+-.|-+|.+.|++-.+.+ .|+..++-+-+...... -...+..+..|+..|+|-|-+..-|.++|+|+.|. |
T Consensus 485 ~L~~~G~GterieeeL~~~--FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD 562 (730)
T COG1198 485 HLRAVGPGTERIEEELKRL--FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDAD 562 (730)
T ss_pred eeEEecccHHHHHHHHHHH--CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEech
Confidence 4666778888776544333 25567887777665432 34557788899999999999999999999999775 4
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCC-CCccce-eccCH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRT-KPGESF-HLYSE 149 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~-~~G~c~-rL~t~ 149 (304)
+|+-. -|.+..-. +-.-+.|=+|||||. .+|..+ --|..
T Consensus 563 ~~L~~---~DfRA~Er-------~fqll~QvaGRAgR~~~~G~VvIQT~~P 603 (730)
T COG1198 563 TGLGS---PDFRASER-------TFQLLMQVAGRAGRAGKPGEVVIQTYNP 603 (730)
T ss_pred hhhcC---CCcchHHH-------HHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence 44321 12221111 123456889999997 567654 33443
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.39 E-value=0.12 Score=53.61 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=60.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCC-cEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPG-LLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV 99 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~-~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VI 99 (304)
++.+||-+|......++.+.|++..+ -.+..+||++++.+|.+.+.....|..+|||-|=-|- =.-++|...||
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~LgLII 262 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLGLVA 262 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCCEEE
Confidence 55799999999999999999987543 5688999999999999999999999999999885332 23455666555
No 147
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=93.36 E-value=0.21 Score=51.87 Aligned_cols=99 Identities=7% Similarity=-0.015 Sum_probs=66.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-C---CcEEEEecCCCCHH---------------------HHhhhhcCCCC-CCeE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-P---GLLVTMAHSKLDTE---------------------VQGAIFGHPPP-GMRK 78 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-~---~~~v~~lhs~l~~~---------------------~q~~~~~~~~~-g~~k 78 (304)
++..+||+.++..+..+.+.|.+. + +...+.++++...+ ...++.+.|.+ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 588999999999999998888653 1 12344455443222 01134444433 5679
Q ss_pred EEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCC-CCcc
Q psy11774 79 VVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRT-KPGE 142 (304)
Q Consensus 79 vilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~-~~G~ 142 (304)
|++.+|.+-||+|.|.+.+++ .| .|..-..+.|-.||+-|. .+|+
T Consensus 594 ilIVvdmllTGFDaP~l~tLy---------ld----------Kplk~h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLY---------LD----------KPLKYHGLLQAIARTNRIDGKDK 639 (667)
T ss_pred EEEEEcccccccCCCccceEE---------Ee----------ccccccHHHHHHHHhccccCCCC
Confidence 999999999999999998776 22 222333567999999994 4443
No 148
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.32 E-value=0.55 Score=50.03 Aligned_cols=148 Identities=15% Similarity=0.135 Sum_probs=85.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC--CeeEEEeC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID--DVAYVVDT 101 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~--~V~~VID~ 101 (304)
.+|.+||++||.+.++.+.+.|.... ..++.=..+.+. .++.+.|..+...|+++|+-.--|||+| +...||=.
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~-~~~l~Qg~~~~~---~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQ-VSHLAQEKNGTA---YNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcC-CcEEEeCCCccH---HHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 47999999999999999999997542 334222222332 3345555566778999999999999997 35555545
Q ss_pred CCccceeecCC----------CCcccccceecc--hhhhhhhccccCCCCC--ccceeccC---HHHHhhhhhcCCCc--
Q psy11774 102 GCHKETRYNSK----------DDLVSLDNQWIS--RASVNQRAGRAGRTKP--GESFHLYS---EDRYRRMAEYSLPE-- 162 (304)
Q Consensus 102 g~~k~~~yd~~----------~~~~~l~~~~is--k~~~~QR~GRaGR~~~--G~c~rL~t---~~~~~~~~~~~~pe-- 162 (304)
+++=.+-.||- .|-+.+...... --...|=.||.=|+.. |+.+.|=+ ...|...-....|+
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP~~~ 801 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLAEEF 801 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCCCCC
Confidence 65522111211 111222222222 3457788899888764 87664422 22354222333343
Q ss_pred -ccccchHHHHHHh
Q psy11774 163 -IFRKPLEQILLTC 175 (304)
Q Consensus 163 -i~r~~L~~~~L~l 175 (304)
+...++.++.-.+
T Consensus 802 ~~~~~~~~~~~~~~ 815 (820)
T PRK07246 802 LISQQNFSDVLVEI 815 (820)
T ss_pred ccccCCHHHHHHHH
Confidence 4445666654433
No 149
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.20 E-value=0.25 Score=51.66 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhh-cCCCCCCeEEEEeccccccCCCCCC--eeEEEe
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIF-GHPPPGMRKVVLSTNVAETSITIDD--VAYVVD 100 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~-~~~~~g~~kvilaTniae~sitI~~--V~~VID 100 (304)
.+|.+|||+|+.+.++.+.+.|....+..++ .++..+...-.+.| +.+..+...|+++|.-.--|||+|| .+.||=
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll-~Q~~~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII 611 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLL-VQGDQPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVII 611 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEE-EeCCchHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEE
Confidence 3556999999999999999998643223332 35543332222222 2344566789999999999999986 788887
Q ss_pred CCCccceeecCCC----------Ccccccc--eecchhhhhhhccccCCCCC--ccceec
Q psy11774 101 TGCHKETRYNSKD----------DLVSLDN--QWISRASVNQRAGRAGRTKP--GESFHL 146 (304)
Q Consensus 101 ~g~~k~~~yd~~~----------~~~~l~~--~~isk~~~~QR~GRaGR~~~--G~c~rL 146 (304)
.|++-...-||.. |-+.+.. .|-.--...|=.||.=|+.. |+.+.|
T Consensus 612 ~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 612 TKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 7776321111111 1111110 11122346788899877654 876654
No 150
>KOG0388|consensus
Probab=92.59 E-value=0.54 Score=48.63 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=87.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCC-CeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPG-MRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g-~~kvilaTniae~sitI~~V~~VID~g 102 (304)
.+..+|+|+--..-++.+-+.|...+ +..+-|-|+....+|..+...+... .--.+++|-...-||++-..+.||
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~-Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTVi--- 1118 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRG-YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVI--- 1118 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhc-cceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEE---
Confidence 45679999877766666666665444 8899999999999999888766543 345688999999999999999999
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
.||..=+ |.--.++.-|+-|-|.++.-.+|||.++..-+
T Consensus 1119 -----FYdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1119 -----FYDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred -----EecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHH
Confidence 4665433 22335677899999999999999999987655
No 151
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=92.39 E-value=0.19 Score=52.74 Aligned_cols=105 Identities=26% Similarity=0.270 Sum_probs=64.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC---Cee---
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID---DVA--- 96 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~---~V~--- 96 (304)
..+++|||-..+.+.-+.+.+.|.+.+ +.-..|.+.-...+-..+-+....| -|=+|||.|.+|-+|. +..
T Consensus 427 ~~gqPvLvgT~sie~SE~ls~~L~~~~-i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~ 503 (822)
T COG0653 427 EKGQPVLVGTVSIEKSELLSKLLRKAG-IPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVM 503 (822)
T ss_pred hcCCCEEEcCcceecchhHHHHHHhcC-CCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHH
Confidence 347789999999999999999998654 4334444443333333333333333 5889999999999973 322
Q ss_pred -----EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccC
Q psy11774 97 -----YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYS 148 (304)
Q Consensus 97 -----~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t 148 (304)
+||-+....... ==.|=.||+||.+ ||..-.+.|
T Consensus 504 ~lGGL~VIgTERhESRR------------------IDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 504 ELGGLHVIGTERHESRR------------------IDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred HhCCcEEEecccchhhH------------------HHHHhhcccccCCCcchhhhhhh
Confidence 344332221111 1137889999987 576544444
No 152
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.10 E-value=0.22 Score=51.91 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=61.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-cccCCCCCCeeEEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-AETSITIDDVAYVV 99 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-ae~sitI~~V~~VI 99 (304)
+..+||..|+.+-+.+.++.+++. .++.+..+||+++..++.+.++....|...|||+|.- ....+.+.++.+||
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 557999999999999888877653 2488999999999999988888878888899999973 44456678888776
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=91.91 E-value=1 Score=46.43 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=87.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCe--eEEEeC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDV--AYVVDT 101 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V--~~VID~ 101 (304)
.+|.+|||+|+.+..+.+.+.+........+..+|..+.++..+-|....++ -++|+|.-..-|||+++= ..||=.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeEEEEE
Confidence 4679999999999999999999765422355667777777565556544333 899999999999999864 555555
Q ss_pred CCcccee----------ecCCCCc--ccccceecchhhhhhhccccCCCCC--ccceec---cCHHHHh-hhhhcCCCcc
Q psy11774 102 GCHKETR----------YNSKDDL--VSLDNQWISRASVNQRAGRAGRTKP--GESFHL---YSEDRYR-RMAEYSLPEI 163 (304)
Q Consensus 102 g~~k~~~----------yd~~~~~--~~l~~~~isk~~~~QR~GRaGR~~~--G~c~rL---~t~~~~~-~~~~~~~pei 163 (304)
|++-... |....|- ......+..--...|=.||+=|... |.++-| |....|. .+++.-.+.+
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~~ 635 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPFP 635 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCCc
Confidence 5542211 1111111 1122233444567888999988654 887765 3333344 3444444433
Q ss_pred cc
Q psy11774 164 FR 165 (304)
Q Consensus 164 ~r 165 (304)
..
T Consensus 636 ~~ 637 (654)
T COG1199 636 KS 637 (654)
T ss_pred cc
Confidence 33
No 154
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.57 E-value=0.52 Score=47.47 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=56.0
Q ss_pred EEEEcCCHHHHHHHHHHHhcC---C-CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccccC-CCCCCeeE
Q psy11774 28 ILCFLPGWQDIIQVSRVLSAI---P-GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAETS-ITIDDVAY 97 (304)
Q Consensus 28 iLVFlp~~~ei~~~~~~L~~~---~-~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~s-itI~~V~~ 97 (304)
.||+.||++-+.++.+.+... . ++.+..++|+++...|...++. | ..|||+|+ ..+++ +++..|.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999988877542 2 5889999999999999888875 4 68999997 34444 88888988
Q ss_pred EE
Q psy11774 98 VV 99 (304)
Q Consensus 98 VI 99 (304)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 87
No 155
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=91.26 E-value=0.74 Score=45.42 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=67.5
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccC-----CCCCCee
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETS-----ITIDDVA 96 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~s-----itI~~V~ 96 (304)
....+.+|||+|+.=|--++.+.|.+.. +.+..+|=-.+..+..++-..|-.|+++|+|-| ||- ..|.||+
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~-~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~T---ER~HFfrRy~irGi~ 372 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKEN-ISFVQISEYTSNSDISRARSQFFHGRKPILLYT---ERFHFFRRYRIRGIR 372 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcC-CeEEEecccCCHHHHHHHHHHHHcCCceEEEEE---hHHhhhhhceecCCc
Confidence 4567889999999999999999998544 788888877778888888888889999999988 554 3589999
Q ss_pred EEEeCCCccceee
Q psy11774 97 YVVDTGCHKETRY 109 (304)
Q Consensus 97 ~VID~g~~k~~~y 109 (304)
.||=.|++..+.|
T Consensus 373 ~viFY~~P~~p~f 385 (442)
T PF06862_consen 373 HVIFYGPPENPQF 385 (442)
T ss_pred EEEEECCCCChhH
Confidence 9996666555543
No 156
>KOG0347|consensus
Probab=90.99 E-value=0.5 Score=47.53 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=47.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 27 AILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 27 ~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
--|||.||++-+.++++.|.. ..++.+..+.|||+...|++++..- -.|||||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~----p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQR----PDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcC----CCEEEecc
Confidence 389999999999999998853 4679999999999999999999863 36999997
No 157
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=90.86 E-value=0.69 Score=49.58 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=64.2
Q ss_pred cEEEEcCC---HHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEe----ccccccCCCCC-CeeEE
Q psy11774 27 AILCFLPG---WQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLS----TNVAETSITID-DVAYV 98 (304)
Q Consensus 27 ~iLVFlp~---~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvila----Tniae~sitI~-~V~~V 98 (304)
..|||+|. .+.++++++.|++.+ +++...|++ ..+.++.|..|+..|+|. .+++-+|||+| -|+|+
T Consensus 337 GgLIfV~~d~G~e~aeel~e~Lr~~G-i~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYa 410 (1187)
T COG1110 337 GGLIFVPIDYGREKAEELAEYLRSHG-INAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYA 410 (1187)
T ss_pred CeEEEEEcHHhHHHHHHHHHHHHhcC-ceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEE
Confidence 48999999 899999999999876 999999985 256788889999998886 57889999999 68899
Q ss_pred EeCCCccce
Q psy11774 99 VDTGCHKET 107 (304)
Q Consensus 99 ID~g~~k~~ 107 (304)
|=.|.+|.+
T Consensus 411 IF~GvPk~r 419 (1187)
T COG1110 411 VFYGVPKFR 419 (1187)
T ss_pred EEecCCcee
Confidence 999988654
No 158
>KOG0331|consensus
Probab=89.52 E-value=1.5 Score=44.08 Aligned_cols=70 Identities=21% Similarity=0.189 Sum_probs=55.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----cc-ccCCCCCCee
Q psy11774 26 GAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VA-ETSITIDDVA 96 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----ia-e~sitI~~V~ 96 (304)
-.+||-.||++-..++.+...+. ..+...++||+.+...|.+.++.. ..|++||+ .. +..+++.++.
T Consensus 166 P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~g----vdiviaTPGRl~d~le~g~~~l~~v~ 241 (519)
T KOG0331|consen 166 PIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERG----VDVVIATPGRLIDLLEEGSLNLSRVT 241 (519)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcC----CcEEEeCChHHHHHHHcCCcccccee
Confidence 34999999999998888776543 347799999999999998888753 47999996 34 4455678999
Q ss_pred EEE
Q psy11774 97 YVV 99 (304)
Q Consensus 97 ~VI 99 (304)
|+|
T Consensus 242 ylV 244 (519)
T KOG0331|consen 242 YLV 244 (519)
T ss_pred EEE
Confidence 988
No 159
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=88.50 E-value=0.58 Score=50.44 Aligned_cols=75 Identities=9% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-ccccCCCCCCeeEEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-VAETSITIDDVAYVV 99 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-iae~sitI~~V~~VI 99 (304)
...++|.+|+..-+.+..+.+.+. -++.+..++|..+..++.+.++....|+..|||+|. +....+.+.++.+||
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 467999999999999988877643 237888999999999988888877778889999998 333456778888766
No 160
>PF13871 Helicase_C_4: Helicase_C-like
Probab=88.05 E-value=1.3 Score=41.00 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=44.8
Q ss_pred hcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC
Q psy11774 69 FGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK 139 (304)
Q Consensus 69 ~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~ 139 (304)
.+.|..|...|+|-|..+.+||.+..-.-|-| .+.++......|-|-..++|--||+-|+.
T Consensus 54 ~~~F~~g~k~v~iis~AgstGiSlHAd~~~~n----------qr~Rv~i~le~pwsad~aiQ~~GR~hRsn 114 (278)
T PF13871_consen 54 KQAFMDGEKDVAIISDAGSTGISLHADRRVKN----------QRRRVHITLELPWSADKAIQQFGRTHRSN 114 (278)
T ss_pred HHHHhCCCceEEEEecccccccchhccccCCC----------CCceEEEEeeCCCCHHHHHHHhccccccc
Confidence 34667888999999999999999885333333 23344444556678889999999999974
No 161
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.93 E-value=1.7 Score=45.02 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhc----CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccc-cCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSA----IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAE-TSITID 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~----~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae-~sitI~ 93 (304)
....+||.+|+++-+.++++.+.. .+++.+..+||+.+.+.+.+.+.. ...|||+|+ ... ..+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcchh
Confidence 345799999999999988777653 246899999999998888777653 246999995 222 346788
Q ss_pred CeeEEE
Q psy11774 94 DVAYVV 99 (304)
Q Consensus 94 ~V~~VI 99 (304)
++.+||
T Consensus 149 ~l~~lV 154 (629)
T PRK11634 149 KLSGLV 154 (629)
T ss_pred hceEEE
Confidence 888766
No 162
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=87.93 E-value=0.67 Score=47.82 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=60.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccc-cCCCCCCeeEEE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAE-TSITIDDVAYVV 99 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae-~sitI~~V~~VI 99 (304)
.+..+++-+|+..-+.+..+.+++. -++.+..+||+++..++...++....|...|||+|...= .++.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3567999999999999888877653 248999999999999988888887888889999997543 235567777766
No 163
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.63 E-value=0.65 Score=49.82 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=51.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC----C--CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI----P--GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV 85 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~----~--~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni 85 (304)
.++++++-+||.--+.++++.|++. + ...+. +||.|+..++.++++++.+|..+|+|+|+-
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3578999999999999999998643 2 23444 999999999999999999999999999974
No 164
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=87.53 E-value=0.42 Score=49.99 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=62.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV 99 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VI 99 (304)
.+..+||-+|......++.+.++..-+..+..+||+|++.+|...+.+...|..+||+-|=-| --..+++...+|
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA-lF~Pf~~LGLII 318 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA-LFLPFKNLGLII 318 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-hcCchhhccEEE
Confidence 346899999999999999999987766889999999999999999999999999999987432 112356777666
No 165
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=87.27 E-value=1.4 Score=43.53 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=54.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhc----CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccc-cCCCCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSA----IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAE-TSITIDD 94 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~----~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae-~sitI~~ 94 (304)
...+||.+|+++-+.++.+.++. .+++.+..++|+.+...+.+.++. ...|+|+|+ ... ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~----~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH----GAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC----CCCEEEEChHHHHHHHHcCCccHHH
Confidence 34699999999999998877754 235899999999999888776652 347999993 333 4567888
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+++||
T Consensus 148 l~~lV 152 (460)
T PRK11776 148 LNTLV 152 (460)
T ss_pred CCEEE
Confidence 88776
No 166
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.53 E-value=0.88 Score=47.62 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=54.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCC---------CcEEEEecCCCCHHHHhhhhcCCC----CCCeEEEEec--ccccc
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIP---------GLLVTMAHSKLDTEVQGAIFGHPP----PGMRKVVLST--NVAET 88 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~---------~~~v~~lhs~l~~~~q~~~~~~~~----~g~~kvilaT--niae~ 88 (304)
.+|.+|||+|+.+.++.+.+.+.+.+ .+-+.+ .+. .+..++++.+. .+..-|++|+ .-..-
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~---~~~~~~l~~f~~~~~~~~gavL~av~gGk~sE 596 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDA---QETSDALERYKQAVSEGRGAVLLSVAGGKVSE 596 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCc---chHHHHHHHHHHHHhcCCceEEEEecCCcccC
Confidence 47999999999999999988776431 122222 111 23444554442 2445699999 88899
Q ss_pred CCCCCC--eeEEEeCCCcc
Q psy11774 89 SITIDD--VAYVVDTGCHK 105 (304)
Q Consensus 89 sitI~~--V~~VID~g~~k 105 (304)
|||++| .+.||=.|++-
T Consensus 597 GIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 597 GIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred ccccCCCCCcEEEEEccCC
Confidence 999987 67888889885
No 167
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=86.00 E-value=3.3 Score=35.51 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDD 94 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~ 94 (304)
..+.+||.+|+.+-+.+..+.++.. .++.+..+||+.+..+....++ +...|+++|+ +......+++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4567999999999999887766543 4578889999998877666554 2347999995 2223355677
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+.++|
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 77766
No 168
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=85.32 E-value=3.3 Score=40.35 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=52.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHh---cCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCCe
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLS---AIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDDV 95 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~---~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~V 95 (304)
++.+||.+|+++-+.++.+.+. ...++.+..++|+.+...+...+.. ...|||+|+ +....++..++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE----NQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC----CCCEEEEChHHHHHHHHcCCcCcccC
Confidence 4679999999998888776654 3345889999999999888777653 246999996 22344567777
Q ss_pred eEEE
Q psy11774 96 AYVV 99 (304)
Q Consensus 96 ~~VI 99 (304)
.+||
T Consensus 149 ~~lV 152 (434)
T PRK11192 149 ETLI 152 (434)
T ss_pred CEEE
Confidence 7666
No 169
>PRK10689 transcription-repair coupling factor; Provisional
Probab=84.58 E-value=1.7 Score=48.09 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=59.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-ccccCCCCCCeeEEE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-VAETSITIDDVAYVV 99 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-iae~sitI~~V~~VI 99 (304)
....+||-+|+..-+.+..+.+.+. .++.+..++|..+..++.++++....|...|||+|. +....+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3567999999999999988877642 136788899999999999888776677788999996 444456667777655
No 170
>KOG1015|consensus
Probab=83.13 E-value=1.7 Score=46.47 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHh---cC------------------CCcEEEEecCCCCHHHHhhhhcCCCCC----Ce
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLS---AI------------------PGLLVTMAHSKLDTEVQGAIFGHPPPG----MR 77 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~---~~------------------~~~~v~~lhs~l~~~~q~~~~~~~~~g----~~ 77 (304)
.-+...|||--+....+.+...|+ .. .+-....|-|+.....|.+.-+.|.+. .|
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 345569999655555554444442 11 123567788999999998877665432 35
Q ss_pred EEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHH
Q psy11774 78 KVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDR 151 (304)
Q Consensus 78 kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~ 151 (304)
-.+|+|-...-||++--..-||-+.- .|||...+.++ =|+-|-|.+.|-..|||.-...
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDa----sWNPSyDtQSI-----------FRvyRfGQtKPvyiYRfiAqGT 1278 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDA----SWNPSYDTQSI-----------FRVYRFGQTKPVYIYRFIAQGT 1278 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEec----ccCCccchHHH-----------HHHHhhcCcCceeehhhhhccc
Confidence 68999999999999865555553222 26666555444 4999999999999999876543
No 171
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.12 E-value=7.1 Score=37.97 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=52.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHh---cCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCCe
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLS---AIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDDV 95 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~---~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~V 95 (304)
...+||.+|+++-+.++.+.+. ...++.+..++|+.+.+.+...++. ...|||+|+ +-...+++.++
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~l~~~l~~~~~~l~~v 158 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLES----GVDILIGTTGRLIDYAKQNHINLGAI 158 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcccccc
Confidence 3469999999999988866554 3345889999999888877766653 236999997 22346778888
Q ss_pred eEEE
Q psy11774 96 AYVV 99 (304)
Q Consensus 96 ~~VI 99 (304)
.+||
T Consensus 159 ~~lV 162 (423)
T PRK04837 159 QVVV 162 (423)
T ss_pred cEEE
Confidence 8777
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=81.86 E-value=1.5 Score=46.53 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhc
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSA 47 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~ 47 (304)
.++|.||||+...+.+.++.+.|..
T Consensus 293 ~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 293 QGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4567899999999888888777643
No 173
>PRK14701 reverse gyrase; Provisional
Probab=81.26 E-value=2.1 Score=48.89 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=50.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-----PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV 85 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-----~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni 85 (304)
+..+||.+|+++-+.++.+.++.. .++.+..+||+++.+++.++++....|..+||++|+-
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 457999999999999998888652 2467889999999999888777666777789999973
No 174
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=80.82 E-value=4.9 Score=41.06 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=52.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----cccc--CCCCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAET--SITIDD 94 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~--sitI~~ 94 (304)
...+||.+|+++-+.++.+.+... .++.+..+||+.+.+.+.+.+.. ...|||+|+ .+.. .+.+.+
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccchhh
Confidence 357999999999998888776543 34789999999999888777653 246999995 3333 356677
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+++||
T Consensus 160 v~~lV 164 (572)
T PRK04537 160 CEICV 164 (572)
T ss_pred eeeeE
Confidence 77655
No 175
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=80.58 E-value=7.1 Score=38.53 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=52.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCCeeE
Q psy11774 27 AILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDDVAY 97 (304)
Q Consensus 27 ~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~V~~ 97 (304)
.+||.+|+++-+.++.+.++.. .++.+..++|+.+.+.+...+. +...|||+|+ +....+.+.++++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 5999999999998888777542 3478889999998887765543 2357999996 3345567888887
Q ss_pred EE
Q psy11774 98 VV 99 (304)
Q Consensus 98 VI 99 (304)
||
T Consensus 153 lV 154 (456)
T PRK10590 153 LV 154 (456)
T ss_pred EE
Confidence 76
No 176
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=77.19 E-value=3.1 Score=46.18 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=46.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCC---CcE---EEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIP---GLL---VTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV 85 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~---~~~---v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni 85 (304)
...+||.+|+++-+.++.+.+.... ++. +..+||+++.++|...++....|...|||+|+-
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 5679999999999999888776431 222 446899999998877776666666789999973
No 177
>PTZ00110 helicase; Provisional
Probab=76.72 E-value=7.6 Score=39.41 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=51.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccccC-CCCCCee
Q psy11774 26 GAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAETS-ITIDDVA 96 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~s-itI~~V~ 96 (304)
..+||.+|+++-+.++.+.+... ..+.+..++|+.+...|...+... ..|||+|+ ..+.+ +++..++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~----~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRG----VEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcC----CCEEEECHHHHHHHHHcCCCChhhCc
Confidence 34899999999988887776543 347888999999888877666432 47999996 44443 5577788
Q ss_pred EEE
Q psy11774 97 YVV 99 (304)
Q Consensus 97 ~VI 99 (304)
+||
T Consensus 280 ~lV 282 (545)
T PTZ00110 280 YLV 282 (545)
T ss_pred EEE
Confidence 666
No 178
>KOG0386|consensus
Probab=76.54 E-value=5.6 Score=42.82 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhh---hhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGA---IFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~---~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
.++.||.|+--..-++.+...|.-. ++..+-|-|....++|-. .|..+.......+++|-....|+++...+.||-
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~-~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii 803 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIR-EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII 803 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhh-hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE
Confidence 3678999987666665555555433 377888888888888754 455555667899999999999999998888883
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
||+.-+-... -++.-|+-|.|-...-.++||.+-..++
T Consensus 804 --------fdsdwnp~~d-------~qaqdrahrigq~~evRv~rl~tv~sve 841 (1157)
T KOG0386|consen 804 --------FDSDWNPHQD-------LQAQDRAHRIGQKKEVRVLRLITVNSVE 841 (1157)
T ss_pred --------ecCCCCchhH-------HHHHHHHHHhhchhheeeeeeehhhHHH
Confidence 5544332211 1334466666766677889998876655
No 179
>PRK13766 Hef nuclease; Provisional
Probab=76.32 E-value=6.8 Score=41.30 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=53.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCC---CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIP---GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITID 93 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~---~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~ 93 (304)
.+.+.+||.+|+...+++..+.+++.. ...+..++|+.+..++.+.+.. ..|+++|. +...-+.+.
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLE 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChh
Confidence 456889999999999988877776532 2478889999999888777753 36999985 222345567
Q ss_pred CeeEEE
Q psy11774 94 DVAYVV 99 (304)
Q Consensus 94 ~V~~VI 99 (304)
++++||
T Consensus 131 ~~~liV 136 (773)
T PRK13766 131 DVSLLI 136 (773)
T ss_pred hCcEEE
Confidence 777766
No 180
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=75.92 E-value=9.6 Score=37.73 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=52.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCCe
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDDV 95 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~V 95 (304)
...+||.+|+++-+.+..+.++.. .++.+..++|+.+...+.+.+.. +...|||+|+ .....+.+.++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~---~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEA---RFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhC---CCCCEEEECHHHHHHHHHcCCcccccC
Confidence 356999999999998887766543 35789999999887776655542 2347999996 22335567778
Q ss_pred eEEE
Q psy11774 96 AYVV 99 (304)
Q Consensus 96 ~~VI 99 (304)
++||
T Consensus 239 ~~lV 242 (475)
T PRK01297 239 EVMV 242 (475)
T ss_pred ceEE
Confidence 7766
No 181
>KOG0338|consensus
Probab=75.71 E-value=6.4 Score=39.56 Aligned_cols=72 Identities=25% Similarity=0.371 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHh---cCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-------cccCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLS---AIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-------AETSITID 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~---~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-------ae~sitI~ 93 (304)
..-.+||.+||++-.-++.+..+ ....+.|.-.-|||+...|..++...| .|||||+= -..|++++
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~P----DIVIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRP----DIVIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCC----CEEEecchhHHHHhccCCCcccc
Confidence 34579999999998777766544 334577777789999999999998755 59999973 24577888
Q ss_pred CeeEEE
Q psy11774 94 DVAYVV 99 (304)
Q Consensus 94 ~V~~VI 99 (304)
+|.+.|
T Consensus 327 siEVLv 332 (691)
T KOG0338|consen 327 SIEVLV 332 (691)
T ss_pred ceeEEE
Confidence 888766
No 182
>KOG1000|consensus
Probab=75.40 E-value=13 Score=37.39 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCC--CeEEEEeccccccCCCCCCeeEEE
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPG--MRKVVLSTNVAETSITIDDVAYVV 99 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g--~~kvilaTniae~sitI~~V~~VI 99 (304)
..++-.+|||.--..-.+.+...+.+++ +..+-+-|+.+..+|....+.|... .+--|++-..+..|+|+...+.||
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r~-vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VV 567 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKRK-VGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVV 567 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHcC-CCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEE
Confidence 3455679999988888888877787765 7788899999999998888776544 334588888999999999989888
Q ss_pred eCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceec
Q psy11774 100 DTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHL 146 (304)
Q Consensus 100 D~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL 146 (304)
=.-+ .|+|..- -+++-|+-|.|.+.. ++.|-.
T Consensus 568 FaEL----~wnPgvL-----------lQAEDRaHRiGQkssV~v~ylv 600 (689)
T KOG1000|consen 568 FAEL----HWNPGVL-----------LQAEDRAHRIGQKSSVFVQYLV 600 (689)
T ss_pred EEEe----cCCCceE-----------EechhhhhhccccceeeEEEEE
Confidence 3222 2443321 245668888887665 555543
No 183
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.74 E-value=5.8 Score=39.35 Aligned_cols=59 Identities=20% Similarity=0.132 Sum_probs=49.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
.|..||..|+++-+....+.|...+ +.+..++|+.+.+++..++.....+..+|+++|+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~g-i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASG-IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 5679999999999888888887654 7888999999998888887766777788999987
No 184
>KOG0339|consensus
Probab=72.47 E-value=13 Score=37.60 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=50.2
Q ss_pred CCcEEE-EcCCHHHHHHHH---HHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCC
Q psy11774 25 PGAILC-FLPGWQDIIQVS---RVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDD 94 (304)
Q Consensus 25 ~g~iLV-Flp~~~ei~~~~---~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~ 94 (304)
.|+|+| -+|+++-..++. +.+-+.-++.++++||+.+..+|.+.++.. --+||||+ +---++++-.
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g----~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEG----AEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcC----CeEEEechHHHHHHHHhhccccee
Confidence 566655 479988766654 444333458999999999999999888732 36999997 2223566777
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
|.|.|
T Consensus 371 vS~LV 375 (731)
T KOG0339|consen 371 VSYLV 375 (731)
T ss_pred eeEEE
Confidence 77765
No 185
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=71.32 E-value=7.7 Score=39.61 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=49.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
.|.++|..|..+-+....+.|+..+ +.+..+||+++.+++..++.....|..++++.|+
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~g-i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAG-VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 5678999999999988888888765 7889999999999988888776777788888775
No 186
>KOG0389|consensus
Probab=69.35 E-value=6.9 Score=41.22 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=48.8
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCCCCC--CeEEEEec-cccccCCC-----
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHPPPG--MRKVVLST-NVAETSIT----- 91 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~~~g--~~kvilaT-niae~sit----- 91 (304)
..+.+|+-||-+|+-- ++...+.+.+. |.++|.++||+ +++|.++-.....+ ...|||+| |+|+++=+
T Consensus 444 q~g~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsfl 520 (941)
T KOG0389|consen 444 QIGNPGPHLVVVPSST-LENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFL 520 (941)
T ss_pred HcCCCCCcEEEecchh-HHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHH
Confidence 4456899999999753 44333333343 67999999999 57776654433332 67888887 55554432
Q ss_pred -CCCeeEEE
Q psy11774 92 -IDDVAYVV 99 (304)
Q Consensus 92 -I~~V~~VI 99 (304)
--..+|||
T Consensus 521 k~~~~n~vi 529 (941)
T KOG0389|consen 521 KNQKFNYVI 529 (941)
T ss_pred HhccccEEE
Confidence 23456777
No 187
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=69.13 E-value=9.5 Score=38.21 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=56.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDD 94 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~ 94 (304)
.+|.+|.--||+--+.+=++.+.+ .+.-.+..|.|..++++|.+.+. +.||++||+ +.+-=+++.+
T Consensus 57 ~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~d 131 (542)
T COG1111 57 FGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDD 131 (542)
T ss_pred cCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHH
Confidence 355788889999888776666654 34468899999999999998886 368999995 6666788999
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
|.++|
T Consensus 132 v~~li 136 (542)
T COG1111 132 VSLLI 136 (542)
T ss_pred ceEEE
Confidence 99888
No 188
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=64.24 E-value=22 Score=36.97 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=48.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCH-HHHhhhhcC-CCCCCeEEEEeccccccCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDT-EVQGAIFGH-PPPGMRKVVLSTNVAETSITI 92 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~-~~q~~~~~~-~~~g~~kvilaTniae~sitI 92 (304)
..|..||-+++...++.+.+.|+..-.+.+ -+.|..+. .+..+.|.. ...+...|+++|+-+=.|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~-l~qg~~~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEI-VIQSEKNRLASAEQQFLALYANGIQPVLIAAGGAWTGIDL 538 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCE-EEeCCCccHHHHHHHHHHhhcCCCCcEEEeCCcccccccc
Confidence 478999999999999999999976433333 34454432 333444432 123467899999999999999
No 189
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=63.47 E-value=15 Score=38.75 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=50.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-ccccCC---------
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-VAETSI--------- 90 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-iae~si--------- 90 (304)
.+...+|+..|+++-+.+..+.+++. .++.+..++|+.+.+++..+.+. ..||++|+ ....++
T Consensus 79 ~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~-----~~IivtTPd~L~~~~L~~~~~~~~ 153 (742)
T TIGR03817 79 DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREH-----ARYVLTNPDMLHRGILPSHARWAR 153 (742)
T ss_pred CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcC-----CCEEEEChHHHHHhhccchhHHHH
Confidence 34567999999999998888877654 35788889999887766544332 36999996 222121
Q ss_pred CCCCeeEEE
Q psy11774 91 TIDDVAYVV 99 (304)
Q Consensus 91 tI~~V~~VI 99 (304)
.+.++++||
T Consensus 154 ~l~~l~~vV 162 (742)
T TIGR03817 154 FLRRLRYVV 162 (742)
T ss_pred HHhcCCEEE
Confidence 156778776
No 190
>PTZ00424 helicase 45; Provisional
Probab=63.09 E-value=37 Score=32.38 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=49.9
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecccc------ccCCCC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVA------ETSITI 92 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTnia------e~sitI 92 (304)
....+.+||++|+++-+.++.+.+... ..+.+..+.|+....++...+.. + ..|+|+|.=. ...+.+
T Consensus 93 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~-~~Ivv~Tp~~l~~~l~~~~~~l 168 (401)
T PTZ00424 93 DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKA---G-VHMVVGTPGRVYDMIDKRHLRV 168 (401)
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcC---C-CCEEEECcHHHHHHHHhCCccc
Confidence 334567999999999888877766543 34677778888776665544432 2 3699999621 234567
Q ss_pred CCeeEEE
Q psy11774 93 DDVAYVV 99 (304)
Q Consensus 93 ~~V~~VI 99 (304)
.++++||
T Consensus 169 ~~i~lvV 175 (401)
T PTZ00424 169 DDLKLFI 175 (401)
T ss_pred ccccEEE
Confidence 8888776
No 191
>PRK09401 reverse gyrase; Reviewed
Probab=62.44 E-value=13 Score=41.29 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCC---CcEE--EEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccccCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIP---GLLV--TMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAETSITID 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~---~~~v--~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~sitI~ 93 (304)
.++.+||.+|+++-+.++.+.++... ++.+ +..|++++.+++.+..+....+...|+|+|+ ..+ .+...
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~ 200 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKK 200 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hcccc
Confidence 35779999999999999998886532 2333 4445666656655555555556678999994 333 34444
Q ss_pred CeeEEE
Q psy11774 94 DVAYVV 99 (304)
Q Consensus 94 ~V~~VI 99 (304)
.+++||
T Consensus 201 ~~~~lV 206 (1176)
T PRK09401 201 KFDFVF 206 (1176)
T ss_pred ccCEEE
Confidence 466554
No 192
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=61.18 E-value=21 Score=32.23 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=44.8
Q ss_pred EEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCC-CCCCeEEEEeccccccCCCCCCeeEEE
Q psy11774 29 LCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHP-PPGMRKVVLSTNVAETSITIDDVAYVV 99 (304)
Q Consensus 29 LVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~-~~g~~kvilaTniae~sitI~~V~~VI 99 (304)
..-.|++++|.......-.. ++.|..+.|+-+.+. ..+... ..+...|+|-=|.+.||+|++|....-
T Consensus 90 ~~~~~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~--ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsY 158 (239)
T PF10593_consen 90 DPDPPSWEEIKPELPKAISD-GIEVVVVNSGSSDDS--LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSY 158 (239)
T ss_pred cCCCcCHHHHHHHHHHHHhc-CceEEEEeCCCcccc--ccccccccCCceEEEECCccccCceeECCcEEEE
Confidence 34457777776544333333 488999998765543 222222 223478999999999999999877654
No 193
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=60.58 E-value=17 Score=29.65 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=42.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHH-HHhhhhcCCCCCCeEEEEecc
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTE-VQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~-~q~~~~~~~~~g~~kvilaTn 84 (304)
+++.+|+.+|+.+-++...+.+... ..+.+..+|++.+.+ ++...+ .+...|+++|.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~ 103 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTP 103 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEH
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCc
Confidence 5568999999999999999888653 346889999998865 344444 23356888885
No 194
>COG4889 Predicted helicase [General function prediction only]
Probab=60.50 E-value=15 Score=39.64 Aligned_cols=75 Identities=12% Similarity=0.280 Sum_probs=55.6
Q ss_pred EEEEecCCCCHHHHhhhhc---CCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhh
Q psy11774 52 LVTMAHSKLDTEVQGAIFG---HPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASV 128 (304)
Q Consensus 52 ~v~~lhs~l~~~~q~~~~~---~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~ 128 (304)
.+-..-|.|..-+|..... .+++..-||+----++.-|+++|.++-|| .+||++.+- ..
T Consensus 501 Si~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsVi--------Ff~pr~smV----------DI 562 (1518)
T COG4889 501 SIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVI--------FFDPRSSMV----------DI 562 (1518)
T ss_pred EeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEE--------EecCchhHH----------HH
Confidence 3444558888888754443 34666778877777899999999999999 578775543 45
Q ss_pred hhhccccCCCCCccce
Q psy11774 129 NQRAGRAGRTKPGESF 144 (304)
Q Consensus 129 ~QR~GRaGR~~~G~c~ 144 (304)
.|-.||+=|..+|+-|
T Consensus 563 VQaVGRVMRKa~gK~y 578 (1518)
T COG4889 563 VQAVGRVMRKAKGKKY 578 (1518)
T ss_pred HHHHHHHHHhCcCCcc
Confidence 6999999998888744
No 195
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=58.74 E-value=19 Score=37.07 Aligned_cols=59 Identities=17% Similarity=0.057 Sum_probs=49.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
.|.+||..|+.+-+....+.|...+ +.+..++|+.+.+++..+++....|..++++.|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~g-i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANG-VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcC-CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 5679999999999988888887765 7888899999999888887777778888888884
No 196
>KOG0337|consensus
Probab=57.70 E-value=19 Score=35.48 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=54.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHhcCC---CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCCee
Q psy11774 26 GAILCFLPGWQDIIQVSRVLSAIP---GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDDVA 96 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~~~~---~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~V~ 96 (304)
-..|+-.|+++-..+..+.+.+.+ ++....++|+-+.++|-..+...+ .||+||+ .+|..+++..|.
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~np----Dii~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENP----DIIIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCC----CEEEecCceeeeeehheecccccee
Confidence 358899999998888877776643 467777888888888877665322 4788886 678889999999
Q ss_pred EEE
Q psy11774 97 YVV 99 (304)
Q Consensus 97 ~VI 99 (304)
|||
T Consensus 167 yVV 169 (529)
T KOG0337|consen 167 YVV 169 (529)
T ss_pred eee
Confidence 999
No 197
>KOG0329|consensus
Probab=56.46 E-value=31 Score=31.92 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=55.5
Q ss_pred cEEEEcCCHHHHHHHHHHHh---c-CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCCee
Q psy11774 27 AILCFLPGWQDIIQVSRVLS---A-IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDDVA 96 (304)
Q Consensus 27 ~iLVFlp~~~ei~~~~~~L~---~-~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~V~ 96 (304)
.+||.+.+++-.-++.+.-. + .|.+++..++||++...-.++++. .-.|+|+|+ +-+.++++.+|+
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 58999999887766655432 2 477999999999999887888876 347999997 457899999998
Q ss_pred -EEEeCC
Q psy11774 97 -YVVDTG 102 (304)
Q Consensus 97 -~VID~g 102 (304)
+|+|-|
T Consensus 188 hFvlDEc 194 (387)
T KOG0329|consen 188 HFVLDEC 194 (387)
T ss_pred eeehhhH
Confidence 556643
No 198
>KOG0336|consensus
Probab=56.41 E-value=41 Score=33.22 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=50.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHh--cCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCCeeE
Q psy11774 26 GAILCFLPGWQDIIQVSRVLS--AIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDDVAY 97 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~--~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~V~~ 97 (304)
-.+||.+|+++-...+.-... ...+++.+++||+-...+|.+.++. ...+|+||+ .....|++.+|+|
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr----gveiiiatPgrlndL~~~n~i~l~siTY 370 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR----GVEIIIATPGRLNDLQMDNVINLASITY 370 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc----CceEEeeCCchHhhhhhcCeeeeeeeEE
Confidence 349999999876555433222 2356889999999888888877754 357899987 3455677888888
Q ss_pred EE
Q psy11774 98 VV 99 (304)
Q Consensus 98 VI 99 (304)
+|
T Consensus 371 lV 372 (629)
T KOG0336|consen 371 LV 372 (629)
T ss_pred EE
Confidence 87
No 199
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=55.33 E-value=11 Score=27.99 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCccc--CCCcccchhhhc
Q psy11774 200 PASITSAATELKLMGVFDQ--EENLTPLGKRIA 230 (304)
Q Consensus 200 ~~~l~~al~~L~~lgald~--~~~lT~lG~~l~ 230 (304)
..++.+|++.|.+-|.|++ .|.||+.|...+
T Consensus 33 ~p~~i~a~~RLheKGLI~~pdGgyLT~~G~~~a 65 (77)
T TIGR02647 33 SPAAVAAAARLHEKGLTTQPDGGYLTSLGLEAA 65 (77)
T ss_pred CHHHHHHHHHHHHcCCccCCCCCEecHHHHHHH
Confidence 3467899999999999974 358999998876
No 200
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=54.33 E-value=66 Score=32.35 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccc-cCCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAE-TSITIDD 94 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae-~sitI~~ 94 (304)
.+..+||.+|+++-+.++.+.++. ..++.+..+.|+.+..++...+.. ...|||+|+ +.. ..+.+.+
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~----~~~IiV~TPgrL~~~l~~~~~~l~~ 270 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQ----GVELIVGTPGRLIDLLSKHDIELDN 270 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcC----CCCEEEECHHHHHHHHHcCCccchh
Confidence 345699999999988776665543 234677888888777766544432 247999994 333 3567888
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+++||
T Consensus 271 v~~lV 275 (518)
T PLN00206 271 VSVLV 275 (518)
T ss_pred eeEEE
Confidence 88766
No 201
>KOG1016|consensus
Probab=53.21 E-value=45 Score=35.59 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=76.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-----------------CCcEEEEecCCCCHHHHhhhhcCCCC--CC-eEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-----------------PGLLVTMAHSKLDTEVQGAIFGHPPP--GM-RKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-----------------~~~~v~~lhs~l~~~~q~~~~~~~~~--g~-~kvilaTn 84 (304)
+..||||-...-+.+-+.+.|.+. .....+-+.|..+.+++.+.+..|.. |. .-++++|-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 456999988887777766666432 01345567788888999988876533 32 47889999
Q ss_pred ccccCCCCCCe-eE-EEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHH
Q psy11774 85 VAETSITIDDV-AY-VVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDR 151 (304)
Q Consensus 85 iae~sitI~~V-~~-VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~ 151 (304)
..-.||++-+. ++ |+|++ |++ +--+.+.=|.-|-|...|-.+|||.-...
T Consensus 799 ag~lGinLIsanr~~ifda~------wnp-----------chdaqavcRvyrYGQ~KpcfvYRlVmD~~ 850 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDAC------WNP-----------CHDAQAVCRVYRYGQQKPCFVYRLVMDNS 850 (1387)
T ss_pred cccccceeeccceEEEEEee------cCc-----------cccchhhhhhhhhcCcCceeEEeehhhhh
Confidence 99999885322 33 44554 232 23355667999999999999999976543
No 202
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=53.10 E-value=23 Score=29.21 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=28.2
Q ss_pred HhhhhcCCCCCC-eEEEEeccccccCCCCCC--eeEEEeCCCccc
Q psy11774 65 QGAIFGHPPPGM-RKVVLSTNVAETSITIDD--VAYVVDTGCHKE 106 (304)
Q Consensus 65 q~~~~~~~~~g~-~kvilaTniae~sitI~~--V~~VID~g~~k~ 106 (304)
..++++.+.... .-|+++|.-..-||++++ .+.||=.|++-.
T Consensus 36 ~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 36 TGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred HHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCC
Confidence 344444443332 279999977899999987 467777777643
No 203
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=52.42 E-value=24 Score=36.20 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=51.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
+|-.||--|-..-++.-.+.|+..+ +.+..++|.++.+++..++.....|..+++.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~G-i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAG-IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcC-ceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 6788999998888888888888877 9999999999999999999999999888876554
No 204
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=51.95 E-value=27 Score=38.76 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=46.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCC--CCeEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPP--GMRKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~--g~~kvilaTn 84 (304)
.|-+||..|.++-+..-...|...+ +.+..+.|+++..++.+++..... |..+||+.|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~G-I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQAN-IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 5789999999998875555555544 889999999999999888876543 6789999997
No 205
>KOG0330|consensus
Probab=51.53 E-value=45 Score=32.64 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=54.8
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecccc-------c
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVA-------E 87 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTnia-------e 87 (304)
++......--.||..||++-..++.+..+.. -++.+..+-||+....|...+-. +-.|||||+=+ -
T Consensus 122 ~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k----kPhilVaTPGrL~dhl~~T 197 (476)
T KOG0330|consen 122 RLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK----KPHILVATPGRLWDHLENT 197 (476)
T ss_pred HHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc----CCCEEEeCcHHHHHHHHhc
Confidence 4444455567999999999888777666543 35899999999998877655432 23689999743 3
Q ss_pred cCCCCCCeeEEE
Q psy11774 88 TSITIDDVAYVV 99 (304)
Q Consensus 88 ~sitI~~V~~VI 99 (304)
.|+.+..++|.|
T Consensus 198 kgf~le~lk~LV 209 (476)
T KOG0330|consen 198 KGFSLEQLKFLV 209 (476)
T ss_pred cCccHHHhHHHh
Confidence 566666666555
No 206
>KOG0951|consensus
Probab=48.61 E-value=66 Score=36.14 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhc---------------------CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEE
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSA---------------------IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVL 81 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~---------------------~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvil 81 (304)
..+.+.+||+|+++.+..++..+-. ...+....=|-+++..++.-+-.-+..|...|.|
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEE
Confidence 3567799999999999887654410 0001111118888888887665556677777765
Q ss_pred eccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccC--HH-HHhhhhhc
Q psy11774 82 STNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYS--ED-RYRRMAEY 158 (304)
Q Consensus 82 aTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t--~~-~~~~~~~~ 158 (304)
..-= -.|+... -+.||-.|- ..||-.... ...-+-+...|+.|+|.| .|+|+.+.. +. .|..+-..
T Consensus 1437 ~s~~-~~~~~~~-~~lVvvmgt---~~ydg~e~~----~~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e 1505 (1674)
T KOG0951|consen 1437 MSRD-CYGTKLK-AHLVVVMGT---QYYDGKEHS----YEDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYE 1505 (1674)
T ss_pred EEcc-ccccccc-ceEEEEecc---eeecccccc----cccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccC
Confidence 4322 3333322 234443342 246655432 233466789999999988 678876654 33 33354444
Q ss_pred CCC
Q psy11774 159 SLP 161 (304)
Q Consensus 159 ~~p 161 (304)
+.|
T Consensus 1506 ~lP 1508 (1674)
T KOG0951|consen 1506 PLP 1508 (1674)
T ss_pred cCc
Confidence 444
No 207
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=45.59 E-value=60 Score=37.21 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=52.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhc---------------CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc----
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSA---------------IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV---- 85 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~---------------~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni---- 85 (304)
...+|+..|+++-+..+.+.|+. ..++.|..+||+.+.++|.+..+..+ .|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~pp----dILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPP----DILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCC----CEEEecHHHHHH
Confidence 46799999999988888776642 13588999999999999887776433 69999973
Q ss_pred -ccc-C-CCCCCeeEEE
Q psy11774 86 -AET-S-ITIDDVAYVV 99 (304)
Q Consensus 86 -ae~-s-itI~~V~~VI 99 (304)
..+ . ..+.+|++||
T Consensus 113 LLtsk~r~~L~~Vr~VI 129 (1490)
T PRK09751 113 MLTSRARETLRGVETVI 129 (1490)
T ss_pred HHhhhhhhhhccCCEEE
Confidence 121 1 2578888877
No 208
>KOG1513|consensus
Probab=45.48 E-value=28 Score=37.12 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=76.1
Q ss_pred CCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC---ccceecc
Q psy11774 71 HPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP---GESFHLY 147 (304)
Q Consensus 71 ~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~---G~c~rL~ 147 (304)
+|-.|...|-+-.-.|.+||.+..=+-|+| .+.++..-...|-|-..++|.-||+-|+.. -.++.|+
T Consensus 852 rFM~GeK~vAIISEAaSSGiSLQsDrRv~N----------qRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlI 921 (1300)
T KOG1513|consen 852 RFMDGEKLVAIISEAASSGISLQSDRRVQN----------QRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLI 921 (1300)
T ss_pred hhccccceeeeeehhhccCceeecchhhhh----------hhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEe
Confidence 456787788777888999999876555543 444554444566788899999999999532 2233333
Q ss_pred CHHHHhhhhhcCCCcccccchHHHHHHhhcCCCccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchh
Q psy11774 148 SEDRYRRMAEYSLPEIFRKPLEQILLTCKVGESLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGK 227 (304)
Q Consensus 148 t~~~~~~~~~~~~pei~r~~L~~~~L~lk~~~~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~ 227 (304)
++- .|.. .|- .---..|+.+|||+...+-----|
T Consensus 922 seL--------------------------AGEr--------RFA------------S~VAKRLESLGALThGDRRATetR 955 (1300)
T KOG1513|consen 922 SEL--------------------------AGER--------RFA------------SIVAKRLESLGALTHGDRRATETR 955 (1300)
T ss_pred hhh--------------------------ccch--------HHH------------HHHHHHHHhhcccccccccccccc
Confidence 220 1111 111 223467888898875443222347
Q ss_pred hhccCCCchhhhHHHHHhhc
Q psy11774 228 RIAAMPCHPKLSKALVESVI 247 (304)
Q Consensus 228 ~l~~lpl~p~~~k~l~~~~~ 247 (304)
-+++|.+|-.+|+--+..+.
T Consensus 956 DLSqfNidNkyGr~ALe~vl 975 (1300)
T KOG1513|consen 956 DLSQFNIDNKYGRRALETVL 975 (1300)
T ss_pred chhhhcccchhhHHHHHHHH
Confidence 78888888888887666544
No 209
>KOG0346|consensus
Probab=42.54 E-value=34 Score=34.01 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=42.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-----PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-----~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
.-.-+|.+||++-+.++.+.+++. ..+.++-+.++++.....-++... -.|||+|+
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~----pdIvV~TP 153 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDL----PDIVVATP 153 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccC----CCeEEeCh
Confidence 345889999999999998887653 247788888888888777666543 36999997
No 210
>PRK13767 ATP-dependent helicase; Provisional
Probab=41.92 E-value=71 Score=34.52 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=42.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHh---------------cCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLS---------------AIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~---------------~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
...+|+..|+++-+.++.+.|. ..+++.+..+||+.+..++.+.+... ..|+|+|+
T Consensus 84 ~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~----p~IlVtTP 154 (876)
T PRK13767 84 KVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKP----PHILITTP 154 (876)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCC----CCEEEecH
Confidence 3459999999998887765443 11257899999999999888777643 36999997
No 211
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=41.76 E-value=56 Score=35.16 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCcEEEEc-CCHHHHHHHHHHHhcC--------------------------CCcEEEEecCCCCHHHHhhhhcCCCCCCe
Q psy11774 25 PGAILCFL-PGWQDIIQVSRVLSAI--------------------------PGLLVTMAHSKLDTEVQGAIFGHPPPGMR 77 (304)
Q Consensus 25 ~g~iLVFl-p~~~ei~~~~~~L~~~--------------------------~~~~v~~lhs~l~~~~q~~~~~~~~~g~~ 77 (304)
....|||+ |+++-++++.+.+++. ..+.+..++|+.+.+.|.+.+.. .-
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~----~p 136 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH----RP 136 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC----CC
Confidence 34577766 9998888877655321 13889999999998887765542 23
Q ss_pred EEEEec
Q psy11774 78 KVVLST 83 (304)
Q Consensus 78 kvilaT 83 (304)
.|||+|
T Consensus 137 ~IIVgT 142 (844)
T TIGR02621 137 AVIVGT 142 (844)
T ss_pred cEEEEC
Confidence 799999
No 212
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=41.75 E-value=78 Score=23.92 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=41.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCC--CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIP--GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV 85 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~--~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni 85 (304)
...+.++|++|+..-++...+.+.... ...+..+++.....++..... ....|+++|.-
T Consensus 28 ~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~i~t~~ 88 (144)
T cd00046 28 LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLS----GKTDIVVGTPG 88 (144)
T ss_pred ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhc----CCCCEEEECcH
Confidence 356789999999999998888776543 377888888766655542221 24567888765
No 213
>KOG0350|consensus
Probab=39.25 E-value=71 Score=32.30 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=53.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHH-hhhhcCCCCCCeEEEEeccc-------cccCCCCCC
Q psy11774 26 GAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQ-GAIFGHPPPGMRKVVLSTNV-------AETSITIDD 94 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q-~~~~~~~~~g~~kvilaTni-------ae~sitI~~ 94 (304)
=+.+|-+|+++-+.++++.+... .++.|..+.|.-+.++- .+.-...+.....|+|||+- .--|+++..
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 35789999999999999888653 35888888887776644 33444444455689999973 256788888
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
.+|.|
T Consensus 296 LrfLV 300 (620)
T KOG0350|consen 296 LRFLV 300 (620)
T ss_pred ceEEE
Confidence 88755
No 214
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=38.67 E-value=37 Score=28.00 Aligned_cols=67 Identities=21% Similarity=0.127 Sum_probs=38.1
Q ss_pred EEEEeccc--cccCCCCCC--eeEEEeCCCccceeecCCCC--cccc-----------cceecchhhhhhhccccCCCCC
Q psy11774 78 KVVLSTNV--AETSITIDD--VAYVVDTGCHKETRYNSKDD--LVSL-----------DNQWISRASVNQRAGRAGRTKP 140 (304)
Q Consensus 78 kvilaTni--ae~sitI~~--V~~VID~g~~k~~~yd~~~~--~~~l-----------~~~~isk~~~~QR~GRaGR~~~ 140 (304)
-|++++.= ..-|||+++ .+.||=.|++-....|+... ...+ ...+-.--...|=+||+=|+..
T Consensus 49 ~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~ 128 (142)
T smart00491 49 ALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKN 128 (142)
T ss_pred EEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCcc
Confidence 68888875 788999987 56777777764333332211 0000 0111222355677888877654
Q ss_pred --ccce
Q psy11774 141 --GESF 144 (304)
Q Consensus 141 --G~c~ 144 (304)
|..+
T Consensus 129 D~g~i~ 134 (142)
T smart00491 129 DYGVVV 134 (142)
T ss_pred ceEEEE
Confidence 5443
No 215
>KOG0340|consensus
Probab=38.56 E-value=78 Score=30.69 Aligned_cols=60 Identities=23% Similarity=0.252 Sum_probs=44.2
Q ss_pred CCCCCCc-EEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 21 CPSFPGA-ILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 21 ~~~~~g~-iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
+.++.|. .|||-|+++-.-+..+.+... -.+++..++|+++.-.|...+.. .-.||+||+
T Consensus 70 sedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatP 133 (442)
T KOG0340|consen 70 SEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD----RPHVVVATP 133 (442)
T ss_pred ccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc----CCCeEecCc
Confidence 3455555 799999999988888877543 35789999999988777666643 236788875
No 216
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=36.73 E-value=81 Score=34.95 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHh----cCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-ccccCCCCCCeeEE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLS----AIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-VAETSITIDDVAYV 98 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~----~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-iae~sitI~~V~~V 98 (304)
.+..|-|.+||.=-.++=.+.+. ..| ++|..|..-.+.+++..+++....|+..|||-|- ++..+|...|+..|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 35679999999765555444444 445 8999998888999999999999999999999985 66778888888866
Q ss_pred E-e----CCCc-c--ceeecCCCCcccccceecchhhhhhhcc
Q psy11774 99 V-D----TGCH-K--ETRYNSKDDLVSLDNQWISRASVNQRAG 133 (304)
Q Consensus 99 I-D----~g~~-k--~~~yd~~~~~~~l~~~~isk~~~~QR~G 133 (304)
| | +|.. | .+..-....+-++.-.||.+.=..-..|
T Consensus 721 IIDEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~G 763 (1139)
T COG1197 721 IIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSG 763 (1139)
T ss_pred EEechhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhc
Confidence 5 4 4531 2 2223333445566667776644433333
No 217
>PHA02653 RNA helicase NPH-II; Provisional
Probab=36.54 E-value=1.1e+02 Score=32.01 Aligned_cols=70 Identities=19% Similarity=0.083 Sum_probs=44.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC------CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI------PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAY 97 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~------~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~ 97 (304)
..+.++|-.|+++-+.++...+.+. .+..+...+|+.+......... ...++++|.-. ....+.++.+
T Consensus 221 ~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k-----~~~Ilv~T~~L-~l~~L~~v~~ 294 (675)
T PHA02653 221 IERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINTNPK-----PYGLVFSTHKL-TLNKLFDYGT 294 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhcccC-----CCCEEEEeCcc-cccccccCCE
Confidence 4568999999988888877766431 2356778899987422121111 23699998532 1124667777
Q ss_pred EE
Q psy11774 98 VV 99 (304)
Q Consensus 98 VI 99 (304)
||
T Consensus 295 VV 296 (675)
T PHA02653 295 VI 296 (675)
T ss_pred EE
Confidence 76
No 218
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=35.80 E-value=97 Score=21.77 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=34.9
Q ss_pred EEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc
Q psy11774 28 ILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV 85 (304)
Q Consensus 28 iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni 85 (304)
.|+.+-|..++..+.+.... +..++.+.|.....++...+...... .+|++++|-
T Consensus 2 ~l~ivEg~~da~~~~~~~~~--~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~ 56 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF--GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDP 56 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC--CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCC
Confidence 46777788888777666532 24667776766555555555543333 679999873
No 219
>PRK14873 primosome assembly protein PriA; Provisional
Probab=35.50 E-value=42 Score=35.12 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=53.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEE--e--C
Q psy11774 26 GAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV--D--T 101 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VI--D--~ 101 (304)
.++..+-.|.+.+++-...+ .++..|+-+-+ + .+++.+. ++..|+|.|--+|-=+. ++++.|+ | +
T Consensus 431 ~~l~~~g~Gter~eeeL~~~--FP~~~V~r~d~----d---~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~ 499 (665)
T PRK14873 431 DRLRAVVVGARRTAEELGRA--FPGVPVVTSGG----D---QVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWA 499 (665)
T ss_pred CcceeeeccHHHHHHHHHHH--CCCCCEEEECh----H---HHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchh
Confidence 34777777777665433322 24455654322 2 2555665 47899999983322222 4555554 3 2
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccC
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYS 148 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t 148 (304)
++.. +-|..... +-.-..|=+|||||.. +|..+..+.
T Consensus 500 ~L~~-pDfRA~Er---------~~qll~qvagragr~~~~G~V~iq~~ 537 (665)
T PRK14873 500 LLGR-QDLRAAED---------TLRRWMAAAALVRPRADGGQVVVVAE 537 (665)
T ss_pred hhcC-CCcChHHH---------HHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 2211 11211111 1123458899999955 588876643
No 220
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=31.97 E-value=1e+02 Score=22.87 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=35.7
Q ss_pred EEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc
Q psy11774 28 ILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV 85 (304)
Q Consensus 28 iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni 85 (304)
..|-+-|+.|+..+.+..-+ ..++..+|..-.+++.+.+... .+.||++||-
T Consensus 3 ~vIiVEG~~D~~~l~~~g~~---~~~i~t~Gt~~~~~~~~~l~~~---~~~VIiltD~ 54 (81)
T cd01027 3 EVIIVEGKNDTESLKKLGIE---AEIIETNGSIINKETIELIKKA---YRGVIILTDP 54 (81)
T ss_pred eEEEEEchHHHHHHHHhCCC---ccEEEECCCcCCHHHHHHHHHh---CCEEEEEECC
Confidence 34556788888777666422 4677777777666666666544 5789999983
No 221
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=31.80 E-value=30 Score=27.84 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=36.5
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHHHcCCcccCC----------Ccccchhhhc
Q psy11774 185 ERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEE----------NLTPLGKRIA 230 (304)
Q Consensus 185 ~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~----------~lT~lG~~l~ 230 (304)
...|.-|...+..-++..+.+-|..|+..|.+.... .||++|+-+.
T Consensus 36 ~~RF~eL~r~i~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~ 91 (120)
T COG1733 36 PKRFNELRRSIGGISPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLL 91 (120)
T ss_pred CCcHHHHHHHccccCHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHHHHH
Confidence 345666667777788999999999999999997532 6899998765
No 222
>KOG0341|consensus
Probab=31.49 E-value=49 Score=32.45 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=55.8
Q ss_pred CCc-EEEEcCCHHHHHHHHHHHh-------c--CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc---------
Q psy11774 25 PGA-ILCFLPGWQDIIQVSRVLS-------A--IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV--------- 85 (304)
Q Consensus 25 ~g~-iLVFlp~~~ei~~~~~~L~-------~--~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni--------- 85 (304)
.|+ -||.+|+++-..+..+.++ + .|.++..-.-|+++..+|..+... -..|+|||+=
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATPGRL~DmL~KK 320 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATPGRLMDMLAKK 320 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCcchHHHHHHHh
Confidence 444 6899999987776666553 2 245566666699999999998864 2689999962
Q ss_pred -----cccCCCCCCeeEEEeCCCcc
Q psy11774 86 -----AETSITIDDVAYVVDTGCHK 105 (304)
Q Consensus 86 -----ae~sitI~~V~~VID~g~~k 105 (304)
+=+-++++..+-.||.|+.-
T Consensus 321 ~~sLd~CRyL~lDEADRmiDmGFEd 345 (610)
T KOG0341|consen 321 IMSLDACRYLTLDEADRMIDMGFED 345 (610)
T ss_pred hccHHHHHHhhhhhHHHHhhccchh
Confidence 22445678888889999975
No 223
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=30.13 E-value=34 Score=23.80 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCC---Ccccchhh
Q psy11774 196 EPPDPASITSAATELKLMGVFDQEE---NLTPLGKR 228 (304)
Q Consensus 196 ~pP~~~~l~~al~~L~~lgald~~~---~lT~lG~~ 228 (304)
..+-.+.+...++.|.+.|.+..++ .+|+.|+.
T Consensus 31 g~~~~~~~~~~l~~l~~~Gll~~~~~~l~lT~~G~l 66 (66)
T PF06969_consen 31 GIDFAEEFQKELEELQEDGLLEIDGGRLRLTEKGRL 66 (66)
T ss_dssp T--THHH-HHHHHHHHHTTSEEE-SSEEEE-TTTGG
T ss_pred CcCHHHHHHHHHHHHHHCCCEEEeCCEEEECcccCc
Confidence 3334556688899999999997554 67888863
No 224
>KOG4439|consensus
Probab=29.90 E-value=88 Score=33.01 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=78.0
Q ss_pred CcEEEEcCCHHHHHHHH-HHHhcCCCcEEEEecCCCCHHHHhhhhcCC---CCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 26 GAILCFLPGWQDIIQVS-RVLSAIPGLLVTMAHSKLDTEVQGAIFGHP---PPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~-~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~---~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
.+-+|-++-+..+-.+. ..|.+.+ +....+||.+...+|+.+++.| +.|.+-.+|+=....-|+++-+-.++|=.
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g-~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGG-HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCC-eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 33455556665544433 3455544 8889999999999998887655 34466677887778888999999998865
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
++. |||. =..+|--|+-|.|...+=.-||+..+..-+
T Consensus 825 DlH----WNPa-----------LEqQAcDRIYR~GQkK~V~IhR~~~~gTvE 861 (901)
T KOG4439|consen 825 DLH----WNPA-----------LEQQACDRIYRMGQKKDVFIHRLMCKGTVE 861 (901)
T ss_pred ecc----cCHH-----------HHHHHHHHHHHhcccCceEEEEEEecCcHH
Confidence 553 5543 223455699999998888888887765443
No 225
>PRK00254 ski2-like helicase; Provisional
Probab=29.87 E-value=1.1e+02 Score=32.08 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=46.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----cccc-CCCCCCe
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAET-SITIDDV 95 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~-sitI~~V 95 (304)
.++.+|+-+|+++-+.+..+.+... .++.+..++|+.+...+ .+ +...|||+|+ +... ...+.+|
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~~-----~~~~IiV~Tpe~~~~ll~~~~~~l~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--WL-----GKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh--hh-----ccCCEEEEcHHHHHHHHhCCchhhhcC
Confidence 3578999999999999988777642 24789999999875432 11 2347999994 2221 2346777
Q ss_pred eEEE
Q psy11774 96 AYVV 99 (304)
Q Consensus 96 ~~VI 99 (304)
++||
T Consensus 140 ~lvV 143 (720)
T PRK00254 140 KLVV 143 (720)
T ss_pred CEEE
Confidence 7666
No 226
>KOG1002|consensus
Probab=29.63 E-value=1.2e+02 Score=30.92 Aligned_cols=88 Identities=13% Similarity=0.193 Sum_probs=54.6
Q ss_pred CCcEEEEecCCCCHHHHhhhhcCCCCC--CeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchh
Q psy11774 49 PGLLVTMAHSKLDTEVQGAIFGHPPPG--MRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRA 126 (304)
Q Consensus 49 ~~~~v~~lhs~l~~~~q~~~~~~~~~g--~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~ 126 (304)
.++.++.|-|+|++..|...++.|.+. .+-.+++--...-.+++-....|.= -.+-|||. =.-
T Consensus 661 aGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm----mDPWWNpa-----------Ve~ 725 (791)
T KOG1002|consen 661 AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM----MDPWWNPA-----------VEW 725 (791)
T ss_pred cCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe----ecccccHH-----------HHh
Confidence 348999999999999999998887654 3444554433333333333333331 01223222 112
Q ss_pred hhhhhccccCCCCCccceeccCHHH
Q psy11774 127 SVNQRAGRAGRTKPGESFHLYSEDR 151 (304)
Q Consensus 127 ~~~QR~GRaGR~~~G~c~rL~t~~~ 151 (304)
++.-|.-|.|..+|=.+.|++-++.
T Consensus 726 Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 726 QAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred hhhhhHHhhcCccceeEEEeehhcc
Confidence 4456888999999988888876654
No 227
>PF01090 Ribosomal_S19e: Ribosomal protein S19e; InterPro: IPR001266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes a number of eukaryotic and archaebacterial ribosomal proteins; mammalian S19, Drosophila S19, Ascaris lumbricoides S19g (ALEP-1) and S19s, yeast YS16 (RP55A and RP55B), Aspergillus S16 and Haloarcula marismortui HS12.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZ6_S 3U5G_T 3U5C_T 3O30_M 3O2Z_M 3IZB_S 2XZN_T 2XZM_T 2V7F_A.
Probab=29.22 E-value=29 Score=28.78 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHcCCcccC---C-Ccccchhhh
Q psy11774 199 DPASITSAATELKLMGVFDQE---E-NLTPLGKRI 229 (304)
Q Consensus 199 ~~~~l~~al~~L~~lgald~~---~-~lT~lG~~l 229 (304)
+-.-+..+|+.|+.+|.++.+ | .||+-|+..
T Consensus 93 sg~iiR~~LqqLE~~glv~k~~~~GR~lT~~G~~~ 127 (139)
T PF01090_consen 93 SGSIIRKILQQLEKAGLVEKDPKGGRRLTPKGQRD 127 (139)
T ss_dssp HHHHHHHHHHHHHHTTSEEEETTTEEEE-HHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEecCCCCCEECHHHHHH
Confidence 344578999999999999754 3 599999864
No 228
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=29.09 E-value=1.1e+02 Score=32.07 Aligned_cols=76 Identities=12% Similarity=0.164 Sum_probs=59.7
Q ss_pred CCCCcEEEEcCCHHHHH----HHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecccc-ccCCCCCCeeE
Q psy11774 23 SFPGAILCFLPGWQDII----QVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVA-ETSITIDDVAY 97 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~----~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTnia-e~sitI~~V~~ 97 (304)
+.++...+-.||.=-.+ .+.++|...+ +.|.-|-|++...++.++++...+|...|||-|-.+ .-++...+..+
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL 387 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL 387 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeE
Confidence 34567888889854444 4444554444 899999999999999999999999999999998754 55788888888
Q ss_pred EE
Q psy11774 98 VV 99 (304)
Q Consensus 98 VI 99 (304)
||
T Consensus 388 VI 389 (677)
T COG1200 388 VI 389 (677)
T ss_pred EE
Confidence 87
No 229
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=28.20 E-value=39 Score=24.66 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCC---Ccccchhhhc
Q psy11774 198 PDPASITSAATELKLMGVFDQEE---NLTPLGKRIA 230 (304)
Q Consensus 198 P~~~~l~~al~~L~~lgald~~~---~lT~lG~~l~ 230 (304)
-+...+...++.|...|+|..++ .||+.|+.+.
T Consensus 31 L~~~~~~~yL~~L~~~gLI~~~~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 31 LNYSTLKKYLKELEEKGLIKKKDGKYRLTEKGKEFL 66 (77)
T ss_dssp --HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHCcCeeCCCCEEEECccHHHHH
Confidence 35677899999999999997644 6999998754
No 230
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=27.66 E-value=1.2e+02 Score=26.77 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=39.6
Q ss_pred hccCCC-CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHH--------hhhhcCCCCCCe-EEEEeccc
Q psy11774 17 THFPCP-SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQ--------GAIFGHPPPGMR-KVVLSTNV 85 (304)
Q Consensus 17 ~~i~~~-~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q--------~~~~~~~~~g~~-kvilaTni 85 (304)
.+|+.. ...+++|+-+-+-+|+..+-+.=.-.+ ....|||.+++-+- ....++...+.. -||+|||-
T Consensus 69 C~ICsd~~Rd~~~icVVe~p~Dv~a~E~~~~f~G--~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnp 145 (198)
T COG0353 69 CDICSDESRDKSQLCVVEEPKDVLALEKTGEFRG--LYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNP 145 (198)
T ss_pred CcCcCCcccCCceEEEEcchHHHHHHHHhcccCe--eEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCC
Confidence 556653 335668989999999876544322223 45567777766332 222333344444 89999983
No 231
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=27.42 E-value=1.5e+02 Score=31.01 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=44.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSIT 91 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sit 91 (304)
+..++|-.|+..-..+.++.+.. .-++.+..+.|+++++++...+. ..|+++|| .|-|+|
T Consensus 144 G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y~------~dIvygT~-~e~~FD 206 (656)
T PRK12898 144 GLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYG------ADITYCTN-KELVFD 206 (656)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHcC------CCEEEECC-Cchhhh
Confidence 45699999999888777766643 23589999999999887776653 26999998 444444
No 232
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=25.47 E-value=38 Score=23.41 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHcCCcc
Q psy11774 199 DPASITSAATELKLMGVFD 217 (304)
Q Consensus 199 ~~~~l~~al~~L~~lgald 217 (304)
+..++..+++.|...|.|+
T Consensus 31 ~~~~vs~~i~~L~~~glv~ 49 (68)
T PF13463_consen 31 SKSTVSRIIKKLEEKGLVE 49 (68)
T ss_dssp -HHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHHHCCCEE
Confidence 4567889999999999994
No 233
>PRK05255 hypothetical protein; Provisional
Probab=25.31 E-value=56 Score=28.11 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCCCcccch-hhhccCCCchhhhHHHHHhhccC
Q psy11774 196 EPPDPASITSAATELKLMGVFDQEENLTPLG-KRIAAMPCHPKLSKALVESVIYK 249 (304)
Q Consensus 196 ~pP~~~~l~~al~~L~~lgald~~~~lT~lG-~~l~~lpl~p~~~k~l~~~~~~~ 249 (304)
+.|+...+...+..|+.+|- .|+.|+ ..+..+|++..+-.+|+.+-.+.
T Consensus 15 ~~~SKSq~KRe~~alq~LG~-----~L~~Ls~~ql~~lpL~e~L~~Ai~ea~ri~ 64 (171)
T PRK05255 15 IWVSKSQIKRDAEALQDLGE-----ELVELSKDQLAKLPLDEDLRDAILEAQRIT 64 (171)
T ss_pred cCCChHHHHHHHHHHHHHHH-----HHHhCCHHHHhcCCCCHHHHHHHHHHhhhc
Confidence 67899999999999999983 466554 46889999999999999997663
No 234
>KOG0701|consensus
Probab=24.81 E-value=24 Score=40.29 Aligned_cols=92 Identities=18% Similarity=0.074 Sum_probs=59.6
Q ss_pred EEEEcCCHHHHHHHHHHHhcCCCcE---EEEecCCCCH--------HHHhhhhcCCCCCCeEEEEeccccccCCCCCCee
Q psy11774 28 ILCFLPGWQDIIQVSRVLSAIPGLL---VTMAHSKLDT--------EVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVA 96 (304)
Q Consensus 28 iLVFlp~~~ei~~~~~~L~~~~~~~---v~~lhs~l~~--------~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~ 96 (304)
-++|++-........+.+.+..... +....|.... -.|.+++..+.....+++++|.+++-|++++-+.
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 4677777777777777775432111 2222221111 1234455556666789999999999999999988
Q ss_pred EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCC
Q psy11774 97 YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGR 137 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR 137 (304)
-||- +| .+..+.++.|+.||+-.
T Consensus 375 ~~~~--------~~----------~~~~~~~~vq~~~r~~~ 397 (1606)
T KOG0701|consen 375 LVVL--------FD----------APTYYRSYVQKKGRARA 397 (1606)
T ss_pred hhee--------cc----------CcchHHHHHHhhccccc
Confidence 8873 33 34567788899999854
No 235
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=24.42 E-value=51 Score=24.83 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCcccCC----Ccccchhhhc
Q psy11774 200 PASITSAATELKLMGVFDQEE----NLTPLGKRIA 230 (304)
Q Consensus 200 ~~~l~~al~~L~~lgald~~~----~lT~lG~~l~ 230 (304)
...+.=|+..|+..|+|+... .||+.|+.+.
T Consensus 54 ~~ri~Wa~~~L~~aGli~~~~rG~~~iT~~G~~~l 88 (92)
T PF14338_consen 54 KNRIRWARSYLKKAGLIERPKRGIWRITEKGRKAL 88 (92)
T ss_pred HHhHHHHHHHHHHCCCccCCCCCceEECHhHHHHH
Confidence 345788999999999998743 7999998753
No 236
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=24.07 E-value=46 Score=25.29 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=34.6
Q ss_pred EEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHH------------hhhhcCCCCCCeEEEEeccc
Q psy11774 29 LCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQ------------GAIFGHPPPGMRKVVLSTNV 85 (304)
Q Consensus 29 LVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q------------~~~~~~~~~g~~kvilaTni 85 (304)
|+.+=+..++..+.+.|... ...+.+..|.+..... .+.+...-.+...||+|||-
T Consensus 2 liIvE~ps~a~~i~~~l~~~-~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~ 69 (100)
T PF01751_consen 2 LIIVEKPSDAKAIAKALGGE-EYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDP 69 (100)
T ss_dssp EEEESSHHHHHHHHHHSSTT-TEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-S
T ss_pred EEEEeCHHHHHHHHHHcCCC-CEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCC
Confidence 56667778888888877622 3788888887643321 23333222345789999984
No 237
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=23.82 E-value=80 Score=29.05 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCC---Ccccchhhhc
Q psy11774 196 EPPDPASITSAATELKLMGVFDQEE---NLTPLGKRIA 230 (304)
Q Consensus 196 ~pP~~~~l~~al~~L~~lgald~~~---~lT~lG~~l~ 230 (304)
+- +..++..-+..|...|.|..+| .||++|+.++
T Consensus 37 ~v-s~~ai~pqiKkL~~~~LV~~~~~~Y~LS~~G~iiv 73 (260)
T COG4742 37 NV-SSSAILPQIKKLKDKGLVVQEGDRYSLSSLGKIIV 73 (260)
T ss_pred CC-CcHHHHHHHHHHhhCCCEEecCCEEEecchHHHHH
Confidence 44 3446788899999999997766 6999999876
No 238
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=23.60 E-value=96 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHcCCccc
Q psy11774 198 PDPASITSAATELKLMGVFDQ 218 (304)
Q Consensus 198 P~~~~l~~al~~L~~lgald~ 218 (304)
-+.+.+..+++.|.++|.|+.
T Consensus 33 ~~~~~v~~~l~~Le~~GLler 53 (92)
T PF10007_consen 33 IPLEEVREALEKLEEMGLLER 53 (92)
T ss_pred CCHHHHHHHHHHHHHCCCeEE
Confidence 366789999999999999974
No 239
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=23.55 E-value=54 Score=27.55 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCcccC----CCcccchhhhc
Q psy11774 199 DPASITSAATELKLMGVFDQE----ENLTPLGKRIA 230 (304)
Q Consensus 199 ~~~~l~~al~~L~~lgald~~----~~lT~lG~~l~ 230 (304)
++.++..+++.|...|.++.. -.||+.|+..+
T Consensus 37 sp~sVt~ml~rL~~~GlV~~~~y~gi~LT~~G~~~a 72 (154)
T COG1321 37 SPPSVTEMLKRLERLGLVEYEPYGGVTLTEKGREKA 72 (154)
T ss_pred CcHHHHHHHHHHHHCCCeEEecCCCeEEChhhHHHH
Confidence 344688999999999999753 27999999654
No 240
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=23.22 E-value=63 Score=27.20 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCcccC--C-Ccccchhhh
Q psy11774 201 ASITSAATELKLMGVFDQE--E-NLTPLGKRI 229 (304)
Q Consensus 201 ~~l~~al~~L~~lgald~~--~-~lT~lG~~l 229 (304)
.-+..+|+.|+.+|.++.+ | .||+-|+..
T Consensus 96 ~iiR~~LqqLE~~glVek~~~GR~lT~~G~~~ 127 (150)
T PRK09333 96 SIIRKILQQLEKAGLVEKTKKGRVITPKGRSL 127 (150)
T ss_pred HHHHHHHHHHHHCCCeeeCCCCCEeCHHHHHH
Confidence 4588999999999999743 3 578887653
No 241
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=22.75 E-value=2.6e+02 Score=29.77 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=42.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc
Q psy11774 26 GAILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV 85 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni 85 (304)
..++|-.|+..-..+-++.+.. .-++.+..+.|+++.+++...+. ..|+++|+-
T Consensus 98 ~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 98 KGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 3599999998888877776643 23489999999999998887775 369999986
No 242
>PRK02362 ski2-like helicase; Provisional
Probab=22.28 E-value=1e+02 Score=32.45 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccccC-CCCCCe
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAETS-ITIDDV 95 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~s-itI~~V 95 (304)
.++.+|+.+|+++-+.+..+.++.. .++.+..++|+.....+ .+ +...|||+|+ +...+ ..+.+|
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~--~l-----~~~~IiV~Tpek~~~llr~~~~~l~~v 138 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE--WL-----GDNDIIVATSEKVDSLLRNGAPWLDDI 138 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc--cc-----CCCCEEEECHHHHHHHHhcChhhhhhc
Confidence 4678999999999999988887654 24788889998754432 11 2357999994 22221 235677
Q ss_pred eEEE
Q psy11774 96 AYVV 99 (304)
Q Consensus 96 ~~VI 99 (304)
++||
T Consensus 139 ~lvV 142 (737)
T PRK02362 139 TCVV 142 (737)
T ss_pred CEEE
Confidence 7666
No 243
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=21.98 E-value=71 Score=27.40 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCcccC----C-Ccccchhhh
Q psy11774 199 DPASITSAATELKLMGVFDQE----E-NLTPLGKRI 229 (304)
Q Consensus 199 ~~~~l~~al~~L~~lgald~~----~-~lT~lG~~l 229 (304)
+-.-+..+|++|+.+|.++.+ | .||+-|+..
T Consensus 118 Sg~iiR~~LQqLE~~glVek~~~~~GR~lT~~Gr~~ 153 (169)
T PTZ00095 118 SGKILRWICQQLEKLGLVEQGPKKKGRRLTRKGCNF 153 (169)
T ss_pred chHHHHHHHHHHHHCCCEEecCCCCCCEECHhHHHH
Confidence 445578999999999999743 3 689988864
No 244
>PRK05638 threonine synthase; Validated
Probab=20.97 E-value=2.8e+02 Score=27.29 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcccC---C-----Ccccchhhh
Q psy11774 197 PPDPASITSAATELKLMGVFDQE---E-----NLTPLGKRI 229 (304)
Q Consensus 197 pP~~~~l~~al~~L~~lgald~~---~-----~lT~lG~~l 229 (304)
+.+..++...|..|++.|.|+.. | .||+.|+.+
T Consensus 397 ~~s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~ 437 (442)
T PRK05638 397 PLKYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRL 437 (442)
T ss_pred cCCcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHH
Confidence 45777899999999999999642 2 467666643
No 245
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=20.89 E-value=2.1e+02 Score=30.76 Aligned_cols=107 Identities=17% Similarity=0.052 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
.+.+|-||.++....+.+++...... -+|+.+.|.-+..+ + +. =++.+|++=|.+...|+++++..|=
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~-~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~----- 348 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFT-KKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFD----- 348 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcC-CeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhce-----
Confidence 45668899999888888877776653 57888877655552 2 22 2357899999999999998754321
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSE 149 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~ 149 (304)
+...|-.+.. .-.+.-+..|..||+-.......|.-+..
T Consensus 349 -~~f~yvk~~~------~gpd~~s~~Q~lgRvR~l~~~ei~v~~d~ 387 (824)
T PF02399_consen 349 -SMFAYVKPMS------YGPDMVSVYQMLGRVRSLLDNEIYVYIDA 387 (824)
T ss_pred -EEEEEecCCC------CCCcHHHHHHHHHHHHhhccCeEEEEEec
Confidence 1112211110 11234457899999976655555554443
No 246
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=20.76 E-value=61 Score=23.20 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcccC------C------Ccccchhhh
Q psy11774 197 PPDPASITSAATELKLMGVFDQE------E------NLTPLGKRI 229 (304)
Q Consensus 197 pP~~~~l~~al~~L~~lgald~~------~------~lT~lG~~l 229 (304)
.++..+|..+|..|...|.|... + .||+.|+..
T Consensus 28 ~i~~g~lY~~L~~Le~~gli~~~~~~~~~~~~rk~Y~iT~~G~~~ 72 (75)
T PF03551_consen 28 KISPGSLYPALKRLEEEGLIESRWEEEGNGRPRKYYRITEKGREE 72 (75)
T ss_dssp ETTHHHHHHHHHHHHHTTSEEEEEEEETTSSEEEEEEESHHHHHH
T ss_pred ccChhHHHHHHHHHHhCCCEEEeeeccCCCCCCEEEEECHHHHHH
Confidence 47889999999999999999531 1 588888753
No 247
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=20.52 E-value=94 Score=25.00 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCccc-CC--CcccchhhhccCCCc
Q psy11774 201 ASITSAATELKLMGVFDQ-EE--NLTPLGKRIAAMPCH 235 (304)
Q Consensus 201 ~~l~~al~~L~~lgald~-~~--~lT~lG~~l~~lpl~ 235 (304)
..+.-.++.++.+|.++- +| .||++|+..++-++.
T Consensus 12 DdL~p~~eAaelLgf~~~~~Gdi~LT~~G~~f~~a~~~ 49 (120)
T PF09821_consen 12 DDLLPIVEAAELLGFAEVEEGDIRLTPLGRRFAEADID 49 (120)
T ss_pred HHHHHHHHHHHHcCCeeecCCcEEeccchHHHHHCChH
Confidence 345667788888898863 33 789999999988763
No 248
>KOG3411|consensus
Probab=20.28 E-value=98 Score=25.47 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCccc--CC--Ccccchhh
Q psy11774 199 DPASITSAATELKLMGVFDQ--EE--NLTPLGKR 228 (304)
Q Consensus 199 ~~~~l~~al~~L~~lgald~--~~--~lT~lG~~ 228 (304)
+..-...+++.|+.+|.++. +| .||+-|+.
T Consensus 96 s~~i~rkvlQ~Le~~~~ve~hp~gGR~lt~~Gqr 129 (143)
T KOG3411|consen 96 SGGIARKVLQALEKMGIVEKHPKGGRRLTEQGQR 129 (143)
T ss_pred ccHHHHHHHHHHHhCCceeeCCCCcceeCcccch
Confidence 44557899999999999963 45 78888875
No 249
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=20.12 E-value=56 Score=24.46 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=27.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCcccC----------CCcccchhhhc
Q psy11774 193 QLPEPPDPASITSAATELKLMGVFDQE----------ENLTPLGKRIA 230 (304)
Q Consensus 193 ~~~~pP~~~~l~~al~~L~~lgald~~----------~~lT~lG~~l~ 230 (304)
..+..-++..+...+..|.+.|.+... -.||+.|+.+.
T Consensus 26 ~~l~~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 26 RRLPGISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 333455778899999999999999642 26899998765
Done!