Query psy11774
Match_columns 304
No_of_seqs 236 out of 2355
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 18:37:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 1.9E-52 6.5E-57 432.0 25.1 259 23-288 301-593 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 2.2E-32 7.5E-37 279.7 8.3 218 24-249 251-522 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 2.3E-30 8E-35 264.4 12.9 227 24-262 241-529 (702)
4 2zj8_A DNA helicase, putative 99.9 4E-28 1.4E-32 248.5 7.5 218 24-252 236-513 (720)
5 3eaq_A Heat resistant RNA depe 99.9 1.9E-27 6.4E-32 209.4 3.6 171 18-210 24-211 (212)
6 3i32_A Heat resistant RNA depe 99.9 6.4E-27 2.2E-31 216.8 3.2 176 18-215 21-213 (300)
7 3rc3_A ATP-dependent RNA helic 99.9 3.2E-22 1.1E-26 203.5 9.3 148 24-178 320-476 (677)
8 3i4u_A ATP-dependent RNA helic 99.8 2.5E-20 8.7E-25 170.0 8.7 105 189-293 6-127 (270)
9 2rb4_A ATP-dependent RNA helic 99.8 9.1E-20 3.1E-24 155.0 8.9 123 17-152 26-149 (175)
10 2z83_A Helicase/nucleoside tri 99.8 8.7E-20 3E-24 177.9 9.3 119 25-150 190-313 (459)
11 2hjv_A ATP-dependent RNA helic 99.8 9.1E-20 3.1E-24 153.4 7.5 113 21-152 31-144 (163)
12 1fuk_A Eukaryotic initiation f 99.8 8.2E-20 2.8E-24 153.9 6.4 112 22-152 27-139 (165)
13 3o8b_A HCV NS3 protease/helica 99.8 1.6E-19 5.3E-24 182.7 8.4 118 24-152 395-516 (666)
14 2jlq_A Serine protease subunit 99.8 4.6E-19 1.6E-23 172.3 10.6 117 25-148 188-309 (451)
15 1yks_A Genome polyprotein [con 99.8 6.6E-19 2.3E-23 170.8 8.2 118 25-148 177-297 (440)
16 1t5i_A C_terminal domain of A 99.8 3.5E-19 1.2E-23 151.4 5.2 114 18-150 24-138 (172)
17 2jgn_A DBX, DDX3, ATP-dependen 99.7 6.2E-19 2.1E-23 151.7 5.8 110 24-152 45-155 (185)
18 2p6n_A ATP-dependent RNA helic 99.7 6.2E-19 2.1E-23 152.6 5.4 107 25-150 54-161 (191)
19 2ykg_A Probable ATP-dependent 99.7 6.9E-19 2.4E-23 178.5 6.2 135 23-176 396-552 (696)
20 2whx_A Serine protease/ntpase/ 99.7 1.3E-18 4.3E-23 175.6 7.7 118 25-148 355-476 (618)
21 2yjt_D ATP-dependent RNA helic 99.6 1.4E-19 4.8E-24 153.2 0.0 118 17-153 22-140 (170)
22 3eiq_A Eukaryotic initiation f 99.7 7.1E-19 2.4E-23 166.5 4.3 113 22-153 277-390 (414)
23 3fht_A ATP-dependent RNA helic 99.7 4.6E-18 1.6E-22 160.6 9.7 115 24-151 265-380 (412)
24 3pey_A ATP-dependent RNA helic 99.7 5.8E-18 2E-22 158.6 9.6 117 21-150 239-356 (395)
25 2i4i_A ATP-dependent RNA helic 99.7 4.3E-18 1.5E-22 161.5 8.0 112 23-153 274-386 (417)
26 2wv9_A Flavivirin protease NS2 99.7 7.7E-18 2.6E-22 171.3 9.8 119 24-148 409-531 (673)
27 2v6i_A RNA helicase; membrane, 99.7 5.5E-18 1.9E-22 163.9 7.7 117 25-148 171-288 (431)
28 2v1x_A ATP-dependent DNA helic 99.7 1.5E-17 5.1E-22 167.0 10.9 113 23-154 265-378 (591)
29 1s2m_A Putative ATP-dependent 99.7 1.1E-17 3.7E-22 158.0 8.8 112 23-153 256-368 (400)
30 1hv8_A Putative ATP-dependent 99.7 1.1E-17 3.8E-22 155.2 7.6 112 23-153 236-348 (367)
31 1oyw_A RECQ helicase, ATP-depe 99.7 2.2E-17 7.7E-22 163.4 10.0 111 24-153 235-346 (523)
32 2db3_A ATP-dependent RNA helic 99.7 1.6E-17 5.6E-22 160.3 8.2 105 26-149 301-406 (434)
33 2j0s_A ATP-dependent RNA helic 99.7 1.4E-17 4.8E-22 158.0 7.3 111 24-153 275-386 (410)
34 1xti_A Probable ATP-dependent 99.7 7.6E-17 2.6E-21 151.4 9.6 110 23-151 248-358 (391)
35 3i5x_A ATP-dependent RNA helic 99.7 6.6E-17 2.2E-21 160.2 8.5 113 23-153 337-452 (563)
36 3fmp_B ATP-dependent RNA helic 99.7 7.4E-18 2.5E-22 164.0 0.0 118 21-151 329-447 (479)
37 3sqw_A ATP-dependent RNA helic 99.6 1.4E-16 4.8E-21 159.0 8.5 112 23-152 286-400 (579)
38 3tbk_A RIG-I helicase domain; 99.6 8.3E-17 2.8E-21 157.5 6.6 112 23-153 387-510 (555)
39 4f92_B U5 small nuclear ribonu 99.6 4.1E-16 1.4E-20 172.2 12.1 218 23-251 1153-1440(1724)
40 1fuu_A Yeast initiation factor 99.6 1.2E-17 4.2E-22 156.7 0.0 113 22-153 256-369 (394)
41 4a4z_A Antiviral helicase SKI2 99.6 8.4E-17 2.9E-21 170.1 5.6 117 22-148 333-490 (997)
42 4a2p_A RIG-I, retinoic acid in 99.6 1.1E-16 3.8E-21 157.0 5.4 112 23-153 388-511 (556)
43 3l9o_A ATP-dependent RNA helic 99.6 1E-16 3.6E-21 170.9 4.3 118 23-150 439-597 (1108)
44 1wp9_A ATP-dependent RNA helic 99.6 2.4E-16 8.1E-21 150.3 5.3 112 23-153 359-478 (494)
45 2z0m_A 337AA long hypothetical 99.6 2.4E-16 8.3E-21 144.6 4.9 104 22-148 217-321 (337)
46 4f92_B U5 small nuclear ribonu 99.6 6E-16 2E-20 170.9 8.2 221 23-252 315-610 (1724)
47 1c4o_A DNA nucleotide excision 99.6 1.9E-15 6.6E-20 153.6 9.3 113 24-150 438-550 (664)
48 3fho_A ATP-dependent RNA helic 99.6 2.7E-16 9.3E-21 154.8 1.9 116 21-149 353-469 (508)
49 2d7d_A Uvrabc system protein B 99.6 1.9E-15 6.4E-20 153.6 8.1 113 24-150 444-556 (661)
50 4gl2_A Interferon-induced heli 99.6 9.6E-16 3.3E-20 155.5 4.8 103 25-147 400-515 (699)
51 4a2q_A RIG-I, retinoic acid in 99.5 2.2E-15 7.5E-20 155.9 5.7 112 23-153 629-752 (797)
52 2xgj_A ATP-dependent RNA helic 99.5 7.5E-15 2.6E-19 155.4 8.2 117 24-150 342-499 (1010)
53 4a2w_A RIG-I, retinoic acid in 99.5 8.1E-15 2.8E-19 154.2 7.0 112 22-152 628-751 (936)
54 3oiy_A Reverse gyrase helicase 99.5 1.4E-14 4.7E-19 138.1 5.8 103 25-150 252-365 (414)
55 2eyq_A TRCF, transcription-rep 99.4 5.2E-14 1.8E-18 150.8 6.2 110 24-150 811-922 (1151)
56 1tf5_A Preprotein translocase 99.4 2.8E-13 9.7E-18 139.1 7.7 106 25-151 432-546 (844)
57 1gm5_A RECG; helicase, replica 99.4 3.1E-14 1.1E-18 146.9 0.1 108 24-148 577-695 (780)
58 1gku_B Reverse gyrase, TOP-RG; 99.4 1.8E-13 6E-18 145.6 4.0 74 25-105 275-353 (1054)
59 2oca_A DAR protein, ATP-depend 99.3 1.2E-12 4E-17 128.1 5.3 104 25-148 348-453 (510)
60 3jux_A Protein translocase sub 99.3 2.1E-12 7.3E-17 130.7 6.3 106 25-151 474-588 (822)
61 2fwr_A DNA repair protein RAD2 99.3 3.7E-13 1.3E-17 130.4 0.1 104 23-150 347-454 (472)
62 4ddu_A Reverse gyrase; topoiso 99.3 3.4E-13 1.2E-17 143.9 -0.6 74 25-105 309-388 (1104)
63 2fsf_A Preprotein translocase 99.3 6.3E-12 2.1E-16 129.0 7.7 106 24-150 440-583 (853)
64 3dmq_A RNA polymerase-associat 99.2 5.8E-12 2E-16 132.9 5.9 110 23-150 501-615 (968)
65 1z5z_A Helicase of the SNF2/RA 99.2 4.4E-12 1.5E-16 115.4 3.9 111 24-152 111-226 (271)
66 1nkt_A Preprotein translocase 99.2 2.2E-11 7.7E-16 125.4 7.3 105 25-150 460-617 (922)
67 3h1t_A Type I site-specific re 99.1 3.8E-11 1.3E-15 119.8 6.3 99 23-140 437-545 (590)
68 1z63_A Helicase of the SNF2/RA 99.0 9.7E-11 3.3E-15 114.1 3.8 111 24-152 340-455 (500)
69 1z3i_X Similar to RAD54-like; 98.9 1.6E-09 5.6E-14 109.5 7.4 110 24-152 415-530 (644)
70 3mwy_W Chromo domain-containin 98.8 4.5E-09 1.5E-13 108.8 7.2 111 24-153 571-687 (800)
71 2w00_A HSDR, R.ECOR124I; ATP-b 98.2 1.4E-06 4.7E-11 92.5 6.4 98 25-141 537-695 (1038)
72 2vl7_A XPD; helicase, unknown 97.0 0.00014 5E-09 71.7 1.5 115 24-146 383-518 (540)
73 2ipc_A Preprotein translocase 95.7 0.013 4.5E-07 60.9 6.2 23 24-46 442-464 (997)
74 3hgt_A HDA1 complex subunit 3; 88.7 1.5 5E-05 40.4 8.4 110 24-153 124-240 (328)
75 3crv_A XPD/RAD3 related DNA he 88.5 1.1 3.7E-05 43.9 7.9 114 24-146 392-528 (551)
76 1t6n_A Probable ATP-dependent 88.4 1.2 4.2E-05 37.2 7.3 72 25-99 82-163 (220)
77 2oxc_A Probable ATP-dependent 88.3 1.2 4.1E-05 37.8 7.2 77 18-99 85-171 (230)
78 1vec_A ATP-dependent RNA helic 87.6 2 6.8E-05 35.4 8.1 74 22-99 68-151 (206)
79 4a15_A XPD helicase, ATP-depen 86.9 0.32 1.1E-05 48.6 3.0 76 24-104 447-526 (620)
80 3fe2_A Probable ATP-dependent 85.4 1.8 6.1E-05 37.0 6.8 72 24-99 101-181 (242)
81 1gm5_A RECG; helicase, replica 85.3 0.64 2.2E-05 47.8 4.4 75 25-99 417-495 (780)
82 1qde_A EIF4A, translation init 85.1 2.6 8.9E-05 35.2 7.6 76 19-99 76-160 (224)
83 3iuy_A Probable ATP-dependent 84.4 1.6 5.4E-05 36.8 5.9 72 24-99 93-172 (228)
84 3oiy_A Reverse gyrase helicase 84.3 0.52 1.8E-05 43.7 3.0 77 23-99 62-144 (414)
85 2gxq_A Heat resistant RNA depe 83.7 2.1 7.1E-05 35.2 6.2 72 24-99 71-149 (207)
86 3bor_A Human initiation factor 83.2 2.6 8.7E-05 35.9 6.8 75 22-99 95-178 (237)
87 1q0u_A Bstdead; DEAD protein, 80.4 2.1 7.2E-05 35.8 5.1 74 22-99 69-155 (219)
88 2eyq_A TRCF, transcription-rep 79.8 1.5 5.2E-05 47.0 4.8 75 25-99 652-730 (1151)
89 2pl3_A Probable ATP-dependent 77.2 4.2 0.00014 34.3 6.1 71 24-99 96-176 (236)
90 1xti_A Probable ATP-dependent 76.9 5.5 0.00019 35.9 7.1 74 23-99 74-157 (391)
91 3ber_A Probable ATP-dependent 76.7 4.1 0.00014 35.1 5.9 73 23-99 109-191 (249)
92 1wrb_A DJVLGB; RNA helicase, D 76.3 6.2 0.00021 33.6 7.0 71 25-99 100-179 (253)
93 4ddu_A Reverse gyrase; topoiso 74.8 2.4 8.1E-05 45.3 4.5 76 23-99 119-201 (1104)
94 2v1x_A ATP-dependent DNA helic 74.6 2.5 8.4E-05 41.8 4.4 59 25-84 84-144 (591)
95 1oyw_A RECQ helicase, ATP-depe 71.6 2.7 9.2E-05 40.8 3.7 59 25-84 65-123 (523)
96 1fuu_A Yeast initiation factor 71.1 12 0.0004 33.6 7.9 76 19-99 83-167 (394)
97 3ly5_A ATP-dependent RNA helic 71.0 9.6 0.00033 32.9 6.9 72 24-99 125-206 (262)
98 2i4i_A ATP-dependent RNA helic 69.9 11 0.00037 34.3 7.4 70 26-99 102-180 (417)
99 2db3_A ATP-dependent RNA helic 69.8 8.1 0.00028 36.1 6.6 71 25-99 129-208 (434)
100 2z0m_A 337AA long hypothetical 69.4 11 0.00037 33.0 7.1 70 25-99 56-134 (337)
101 1s2m_A Putative ATP-dependent 69.2 15 0.0005 33.3 8.1 73 23-99 87-168 (400)
102 1wp9_A ATP-dependent RNA helic 68.2 7.2 0.00024 35.7 5.8 72 23-99 50-130 (494)
103 2j0s_A ATP-dependent RNA helic 67.6 13 0.00044 33.8 7.4 74 22-99 102-184 (410)
104 1hv8_A Putative ATP-dependent 62.4 19 0.00066 31.7 7.3 73 22-99 71-152 (367)
105 3eiq_A Eukaryotic initiation f 61.5 22 0.00075 32.1 7.7 78 19-99 102-188 (414)
106 3dkp_A Probable ATP-dependent 60.2 13 0.00045 31.3 5.6 72 25-99 98-180 (245)
107 3fmo_B ATP-dependent RNA helic 59.3 12 0.0004 33.2 5.3 75 18-99 155-240 (300)
108 1gku_B Reverse gyrase, TOP-RG; 43.7 21 0.00072 37.7 4.9 59 24-84 98-163 (1054)
109 3tbk_A RIG-I helicase domain; 42.5 12 0.0004 35.4 2.5 71 25-99 52-132 (555)
110 2ykg_A Probable ATP-dependent 38.3 20 0.00068 35.3 3.5 71 25-99 61-141 (696)
111 4a2p_A RIG-I, retinoic acid in 37.2 19 0.00067 33.9 3.1 71 25-99 55-135 (556)
112 4a2q_A RIG-I, retinoic acid in 37.0 20 0.00069 36.3 3.4 71 25-99 296-376 (797)
113 1q02_A Sequestosome 1; helical 36.7 15 0.00052 24.2 1.5 24 201-224 8-31 (52)
114 3pey_A ATP-dependent RNA helic 36.6 71 0.0024 28.2 6.7 74 18-99 68-150 (395)
115 3u5c_T 40S ribosomal protein S 36.5 16 0.00056 29.3 2.0 34 196-229 94-131 (144)
116 2oca_A DAR protein, ATP-depend 35.3 31 0.0011 32.5 4.2 69 24-99 156-230 (510)
117 3im1_A Protein SNU246, PRE-mRN 35.2 17 0.0006 32.8 2.3 36 214-249 1-38 (328)
118 4a2w_A RIG-I, retinoic acid in 30.8 29 0.00099 36.0 3.4 71 25-99 296-376 (936)
119 3iz6_S 40S ribosomal protein S 30.8 16 0.00053 29.5 1.0 32 198-229 98-133 (146)
120 4gl2_A Interferon-induced heli 30.1 8.9 0.00031 37.9 -0.6 71 25-99 56-141 (699)
121 2xzm_T RPS19E; ribosome, trans 28.7 28 0.00096 28.2 2.2 32 198-229 99-139 (155)
122 3b6e_A Interferon-induced heli 27.8 22 0.00075 28.8 1.5 57 24-84 81-140 (216)
123 3fht_A ATP-dependent RNA helic 26.7 75 0.0026 28.3 5.1 75 18-99 88-173 (412)
124 3fmp_B ATP-dependent RNA helic 26.5 82 0.0028 29.2 5.5 70 23-99 160-240 (479)
125 2zj8_A DNA helicase, putative 24.2 48 0.0016 33.0 3.5 68 25-99 68-143 (720)
126 3sqw_A ATP-dependent RNA helic 23.5 93 0.0032 29.9 5.4 72 25-99 95-180 (579)
127 1tf5_A Preprotein translocase 23.1 74 0.0025 32.8 4.6 68 26-99 125-208 (844)
128 1rif_A DAR protein, DNA helica 22.9 93 0.0032 26.6 4.8 53 25-84 157-212 (282)
129 2xgj_A ATP-dependent RNA helic 21.9 70 0.0024 33.6 4.3 47 200-246 816-864 (1010)
130 3i5x_A ATP-dependent RNA helic 21.6 1E+02 0.0034 29.3 5.1 72 25-99 146-231 (563)
131 2p6r_A Afuhel308 helicase; pro 21.4 83 0.0028 31.1 4.6 68 25-99 68-143 (702)
132 2vn2_A DNAD, chromosome replic 21.1 62 0.0021 24.7 2.9 46 199-244 64-109 (128)
133 2fz4_A DNA repair protein RAD2 21.0 1.1E+02 0.0037 25.7 4.7 35 25-60 133-168 (237)
134 3fho_A ATP-dependent RNA helic 20.5 90 0.0031 29.5 4.5 73 19-99 183-264 (508)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.9e-52 Score=431.98 Aligned_cols=259 Identities=37% Similarity=0.534 Sum_probs=244.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhc----------CCCcEEEEecCCCCHHHHhhhhcCCC-----CCCeEEEEeccccc
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSA----------IPGLLVTMAHSKLDTEVQGAIFGHPP-----PGMRKVVLSTNVAE 87 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~----------~~~~~v~~lhs~l~~~~q~~~~~~~~-----~g~~kvilaTniae 87 (304)
..+|++|||+||+++++.+++.|.+ ..++.+.++||+|++++|.++++.++ .|.++||||||+||
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae 380 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAE 380 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHH
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHH
Confidence 4589999999999999999999874 25689999999999999999999999 99999999999999
Q ss_pred cCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHH-hhhhhcCCCccccc
Q psy11774 88 TSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRY-RRMAEYSLPEIFRK 166 (304)
Q Consensus 88 ~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~-~~~~~~~~pei~r~ 166 (304)
+|||||+|++|||+|+++.+.||+..++..|...|+|+++|.||+|||||.++|.||+||++++| ..+.+++.|||++.
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~ 460 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRS 460 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGS
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 57999999999999
Q ss_pred chHHHHHHhh-cCCCccCCcccccccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHh
Q psy11774 167 PLEQILLTCK-VGESLYSTERCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVES 245 (304)
Q Consensus 167 ~L~~~~L~lk-~~~~~~~~~~~~~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~ 245 (304)
+|+.++|++| +|+. +...|+|+ +||+.+++..|++.|..+||||++|+||++|+.|+.||+||++||||+.|
T Consensus 461 ~L~~~~L~l~~~gi~---~~~~f~~~----~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~ 533 (773)
T 2xau_A 461 NLSSTVLELKKLGID---DLVHFDFM----DPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGS 533 (773)
T ss_dssp CCHHHHHHHHHTTCC---CGGGCCCS----SCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHG
T ss_pred cHHHHHHHHHHcCCC---Chhhcccc----CCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhh
Confidence 9999999999 9988 77778888 99999999999999999999999999999999999999999999999999
Q ss_pred hccCCcc----------cCCceecCCCcHHHHHHHhcccC-------hHHHHHHHHHHhh
Q psy11774 246 VIYKGNC----------NCYGLIVPKSKREGRQDRRKPAA-------PLFQFYSSKIDET 288 (304)
Q Consensus 246 ~~~~C~~----------~~~~f~~p~~~~~~~~~~~~~~~-------~l~~~y~~~~~~~ 288 (304)
..|+|++ +++||+.|.+.+++++.+|+.|+ +++|+|+.|.+..
T Consensus 534 ~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~ 593 (773)
T 2xau_A 534 FEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDE 593 (773)
T ss_dssp GGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHH
T ss_pred cccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc
Confidence 9999988 78999999999999998888774 8889999885544
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.2e-32 Score=279.67 Aligned_cols=218 Identities=19% Similarity=0.141 Sum_probs=168.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCC-C----------------------------------cEEEEecCCCCHHHHhhh
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIP-G----------------------------------LLVTMAHSKLDTEVQGAI 68 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~-~----------------------------------~~v~~lhs~l~~~~q~~~ 68 (304)
++|++|||+||+++++.+++.|.+.. . ..+.++||+|+.++|..+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 56899999999999999999987531 1 248999999999999999
Q ss_pred hcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---Ccccee
Q psy11774 69 FGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGESFH 145 (304)
Q Consensus 69 ~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c~r 145 (304)
++.|+.|.++||||||++|+|||||++++|||+ ...||+..+.. ..|+|.+++.||+|||||.+ +|.||+
T Consensus 331 ~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 403 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIV 403 (715)
T ss_dssp HHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred HHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 999999999999999999999999999999997 34588655432 57999999999999999988 899999
Q ss_pred ccCHHH-Hhhhh---hcCCCcccccchHH------HHHHhh-cCCCccCCcccccccccCCC--CCCHHHHHHHHHHHHH
Q psy11774 146 LYSEDR-YRRMA---EYSLPEIFRKPLEQ------ILLTCK-VGESLYSTERCSSFLSQLPE--PPDPASITSAATELKL 212 (304)
Q Consensus 146 L~t~~~-~~~~~---~~~~pei~r~~L~~------~~L~lk-~~~~~~~~~~~~~fl~~~~~--pP~~~~l~~al~~L~~ 212 (304)
++++.+ +..+. ....||+.++++.. .+|.++ .|.. .+..+..+|+...+- +|+...+..|++.|..
T Consensus 404 l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~-~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~ 482 (715)
T 2va8_A 404 VVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGN-LSEKQLENFAYESLLAKQLVDVYFDRAIRWLLE 482 (715)
T ss_dssp ECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCS-EEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred EeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhcccc-CCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHH
Confidence 998765 33322 25678998887764 566666 5421 001244556543322 5566789999999999
Q ss_pred cCCcccCC---CcccchhhhccCCCchhhhHHHHHhhccC
Q psy11774 213 MGVFDQEE---NLTPLGKRIAAMPCHPKLSKALVESVIYK 249 (304)
Q Consensus 213 lgald~~~---~lT~lG~~l~~lpl~p~~~k~l~~~~~~~ 249 (304)
+|+|+.++ .+|++|+.|+.+|++|..|++++.+....
T Consensus 483 ~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~ 522 (715)
T 2va8_A 483 HSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGH 522 (715)
T ss_dssp TTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHS
T ss_pred CcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhc
Confidence 99998774 89999999999999999999999999883
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=2.3e-30 Score=264.39 Aligned_cols=227 Identities=18% Similarity=0.164 Sum_probs=184.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC--C---------------------------CcEEEEecCCCCHHHHhhhhcCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI--P---------------------------GLLVTMAHSKLDTEVQGAIFGHPPP 74 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~--~---------------------------~~~v~~lhs~l~~~~q~~~~~~~~~ 74 (304)
++|++|||+|++++++.+++.|.+. . ...+.++||+|++++|..+++.|++
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 5789999999999999999888642 0 1247889999999999999999999
Q ss_pred CCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---CccceeccCHHH
Q psy11774 75 GMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGESFHLYSEDR 151 (304)
Q Consensus 75 g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c~rL~t~~~ 151 (304)
|.++||||||++|+|||+|++++|||+ ...|| +. ..|+|.+++.||+|||||.+ +|.||.++++.+
T Consensus 321 g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 321 GNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp TSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred CCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999999999999999986 45577 21 57899999999999999987 799999999887
Q ss_pred Hhhhhh---cCCCcccccchHH------HHHHhh-cCCCccCCcccccccccCC-----CCCCHHHHHHHHHHHHHcCCc
Q psy11774 152 YRRMAE---YSLPEIFRKPLEQ------ILLTCK-VGESLYSTERCSSFLSQLP-----EPPDPASITSAATELKLMGVF 216 (304)
Q Consensus 152 ~~~~~~---~~~pei~r~~L~~------~~L~lk-~~~~~~~~~~~~~fl~~~~-----~pP~~~~l~~al~~L~~lgal 216 (304)
++.+.+ ...||+.+++|.. .+|.+. .|.. .+..+..+|+...+ .+|..+.+..|++.|...|+|
T Consensus 390 ~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~-~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i 468 (702)
T 2p6r_A 390 REIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYA-KTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMV 468 (702)
T ss_dssp HHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSC-SSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCC-CCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCe
Confidence 664433 5688998887764 455555 5521 00123445543322 278899999999999999999
Q ss_pred ccC--CCcccchhhhccCCCchhhhHHHHHhhcc--CCcc-----------cCCceecCCC
Q psy11774 217 DQE--ENLTPLGKRIAAMPCHPKLSKALVESVIY--KGNC-----------NCYGLIVPKS 262 (304)
Q Consensus 217 d~~--~~lT~lG~~l~~lpl~p~~~k~l~~~~~~--~C~~-----------~~~~f~~p~~ 262 (304)
+.+ +.+|++|+.++.+|++|..+++++.+... .|.. ..+.+++|.+
T Consensus 469 ~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e 529 (702)
T 2p6r_A 469 VEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD 529 (702)
T ss_dssp EESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT
T ss_pred eECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch
Confidence 977 78999999999999999999999999988 6643 3456777766
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.94 E-value=4e-28 Score=248.50 Aligned_cols=218 Identities=20% Similarity=0.137 Sum_probs=167.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC-C----------------C---------------cEEEEecCCCCHHHHhhhhcC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI-P----------------G---------------LLVTMAHSKLDTEVQGAIFGH 71 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~-~----------------~---------------~~v~~lhs~l~~~~q~~~~~~ 71 (304)
+++++|||+|++++++.+++.|.+. . . ..+.++||+|++++|..+++.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 4689999999999999999988642 0 0 138999999999999999999
Q ss_pred CCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---CccceeccC
Q psy11774 72 PPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGESFHLYS 148 (304)
Q Consensus 72 ~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c~rL~t 148 (304)
|+.|..+||||||++|+|||+|++++||+.+ ..|| ..| ..|+|.+++.||+|||||.+ +|.||.+++
T Consensus 316 f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 316 FRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999865 3466 222 26899999999999999987 699999999
Q ss_pred HHHHh----hhhhcCCCccccc-----chHHHHHHhh-cCCCccCCcccccccccCC-------CCCCHHHHHHHHHHHH
Q psy11774 149 EDRYR----RMAEYSLPEIFRK-----PLEQILLTCK-VGESLYSTERCSSFLSQLP-------EPPDPASITSAATELK 211 (304)
Q Consensus 149 ~~~~~----~~~~~~~pei~r~-----~L~~~~L~lk-~~~~~~~~~~~~~fl~~~~-------~pP~~~~l~~al~~L~ 211 (304)
+..++ .+.....+++... .|...++... .+.. .+.....+|+...+ ++|..+.+..|++.|.
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~-~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~ 464 (720)
T 2zj8_A 386 SDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGY-STVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLL 464 (720)
T ss_dssp SSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCC-CSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCC-CCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHH
Confidence 76533 2333344444332 3445555555 4321 00112334432221 2334578999999999
Q ss_pred HcCCcc-cCC---CcccchhhhccCCCchhhhHHHHHhhcc----CCcc
Q psy11774 212 LMGVFD-QEE---NLTPLGKRIAAMPCHPKLSKALVESVIY----KGNC 252 (304)
Q Consensus 212 ~lgald-~~~---~lT~lG~~l~~lpl~p~~~k~l~~~~~~----~C~~ 252 (304)
..|+|+ +++ .+|++|+.|+++|++|..+++++.+... .|..
T Consensus 465 ~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (720)
T 2zj8_A 465 ENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPI 513 (720)
T ss_dssp HTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHH
T ss_pred HCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHH
Confidence 999998 665 7999999999999999999999999887 7755
No 5
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=1.9e-27 Score=209.43 Aligned_cols=171 Identities=19% Similarity=0.232 Sum_probs=139.0
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeE
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAY 97 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~ 97 (304)
++.....++++|||++++++++.+++.|...+ +.+.++||++++++|.++++.|..|..+|+||||++++|+|||+|++
T Consensus 24 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 102 (212)
T 3eaq_A 24 DLLYVASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDL 102 (212)
T ss_dssp HHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT-CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSE
T ss_pred HHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcE
Confidence 33344557899999999999999999998765 78999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHH--------------hhhhhcCCCc
Q psy11774 98 VVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRY--------------RRMAEYSLPE 162 (304)
Q Consensus 98 VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~--------------~~~~~~~~pe 162 (304)
||+.+. |.|.+++.||+||+||.+ +|.||.+++..+. ..++....||
T Consensus 103 Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~e 164 (212)
T 3eaq_A 103 VVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 164 (212)
T ss_dssp EEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHH
T ss_pred EEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHH
Confidence 998554 347889999999999986 6999999998652 2234456678
Q ss_pred ccccchHHHHHHhh-cCCCccCCcccc-cccccCCCCCCHHHHHHHHHHH
Q psy11774 163 IFRKPLEQILLTCK-VGESLYSTERCS-SFLSQLPEPPDPASITSAATEL 210 (304)
Q Consensus 163 i~r~~L~~~~L~lk-~~~~~~~~~~~~-~fl~~~~~pP~~~~l~~al~~L 210 (304)
|.+..++.+++.++ ++.. ....+ +++..++++|+++++..|+..|
T Consensus 165 i~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 165 VLEAKWRHLLARLARVPEK---DYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp HHHHHHHHHHHHHTTSCHH---HHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 88888999999998 6654 22333 2222333889999999998765
No 6
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=6.4e-27 Score=216.85 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=140.6
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeE
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAY 97 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~ 97 (304)
++.....++++|||++++++++.+++.|...+ +.+.++||++++++|.++++.|+.|..+|+||||+|++|+|||+|++
T Consensus 21 ~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~ 99 (300)
T 3i32_A 21 DLLYVASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDL 99 (300)
T ss_dssp HHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT-CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSE
T ss_pred HHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeE
Confidence 33333458899999999999999999998765 88999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHH--------------hhhhhcCCCc
Q psy11774 98 VVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRY--------------RRMAEYSLPE 162 (304)
Q Consensus 98 VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~--------------~~~~~~~~pe 162 (304)
|||++++ .|.++|.||+||+||.+ +|.||.+++..+. ..+...+.||
T Consensus 100 VI~~d~p------------------~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~e 161 (300)
T 3i32_A 100 VVHYRMP------------------DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 161 (300)
T ss_dssp EEESSCC------------------SSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHH
T ss_pred EEEcCCC------------------CCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHH
Confidence 9995543 36788999999999986 6999999997652 2344556788
Q ss_pred ccccchHHHHHHhh-cCCCccCCcccc-cccccCCCCCCHHHHHHHHHHHHHcCC
Q psy11774 163 IFRKPLEQILLTCK-VGESLYSTERCS-SFLSQLPEPPDPASITSAATELKLMGV 215 (304)
Q Consensus 163 i~r~~L~~~~L~lk-~~~~~~~~~~~~-~fl~~~~~pP~~~~l~~al~~L~~lga 215 (304)
|.+..+..++++++ ++.. +...| +++..++++|+.+.+.+|+..|.....
T Consensus 162 i~~~~~~~~~~~l~~~~~~---~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 162 VLEAKWRHLLARLARVPEK---DYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp HHHHHHHHHHHHHTTSCHH---HHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 99999999999998 6544 33333 111222377999999999999976554
No 7
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.86 E-value=3.2e-22 Score=203.50 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=120.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCC--CCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPP--GMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~--g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
.+|+ +||++++++++.+++.|++.+ +.+.++||+|++++|.++.+.|.. |.++|+||||++|+|||| +|++|||+
T Consensus 320 ~~g~-iIf~~s~~~ie~la~~L~~~g-~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~ 396 (677)
T 3rc3_A 320 RPGD-CIVCFSKNDIYSVSRQIEIRG-LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFY 396 (677)
T ss_dssp CTTE-EEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEES
T ss_pred CCCC-EEEEcCHHHHHHHHHHHHhcC-CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEEC
Confidence 4565 566778999999999998864 889999999999988877777766 889999999999999999 89999999
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCC----CccceeccCHH--HHhhhhhcCCCcccccchHHHHHHh
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK----PGESFHLYSED--RYRRMAEYSLPEIFRKPLEQILLTC 175 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~----~G~c~rL~t~~--~~~~~~~~~~pei~r~~L~~~~L~l 175 (304)
|..|. .||+..+. ...|+|.+++.||+|||||.+ +|.||++++++ .+..+.....|+|.+.++....+++
T Consensus 397 ~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l 472 (677)
T 3rc3_A 397 SLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQI 472 (677)
T ss_dssp CSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHH
T ss_pred Ccccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHHH
Confidence 99987 78877444 257999999999999999987 58999999887 5668889999999998888887877
Q ss_pred h-cC
Q psy11774 176 K-VG 178 (304)
Q Consensus 176 k-~~ 178 (304)
+ ++
T Consensus 473 ~~~~ 476 (677)
T 3rc3_A 473 EMFA 476 (677)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7 54
No 8
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=169.97 Aligned_cols=105 Identities=23% Similarity=0.266 Sum_probs=90.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHHhhccCCcc----------cCCcee
Q psy11774 189 SFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESVIYKGNC----------NCYGLI 258 (304)
Q Consensus 189 ~fl~~~~~pP~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~~----------~~~~f~ 258 (304)
.+|..++|||+.+++.+|++.|+.+||||++|+||++|+.|+.||+||++||||+.|..++|++ +++||+
T Consensus 6 ~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f~ 85 (270)
T 3i4u_A 6 PEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFY 85 (270)
T ss_dssp --------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCBC
T ss_pred hccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCcccc
Confidence 3344445999999999999999999999999999999999999999999999999999999988 889999
Q ss_pred cCCCcHHHHHHHhcccC-------hHHHHHHHHHHhhhcchh
Q psy11774 259 VPKSKREGRQDRRKPAA-------PLFQFYSSKIDETRNEKM 293 (304)
Q Consensus 259 ~p~~~~~~~~~~~~~~~-------~l~~~y~~~~~~~~~~~~ 293 (304)
.|.+.+++++.+|.+|+ +++|+|+.|.+...+.+|
T Consensus 86 ~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~w 127 (270)
T 3i4u_A 86 RPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPW 127 (270)
T ss_dssp CCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHH
T ss_pred CCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhH
Confidence 99999999999988876 899999999876554444
No 9
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=9.1e-20 Score=155.00 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=100.4
Q ss_pred hccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCee
Q psy11774 17 THFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVA 96 (304)
Q Consensus 17 ~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~ 96 (304)
..+......+.+|||+++.+.++.+++.|...+ +.+..+||++++++|.++++.|..|..+|+|||+++++|+|+|+++
T Consensus 26 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~ 104 (175)
T 2rb4_A 26 CNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG-HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVT 104 (175)
T ss_dssp HHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEE
T ss_pred HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCC
Confidence 344445567899999999999999999998865 7899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHH
Q psy11774 97 YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRY 152 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~ 152 (304)
+||+.+.+ ..- ....+..++.||+||+||.+ +|.|+.+++..+.
T Consensus 105 ~Vi~~d~p--------~~~----~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 105 IVVNFDLP--------VKQ----GEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149 (175)
T ss_dssp EEEESSCC--------C------CCSCCHHHHHHHHCBC----CCEEEEEEECGGGH
T ss_pred EEEEeCCC--------CCc----cccCCHHHHHHHhcccccCCCCceEEEEEccchH
Confidence 99984433 110 11257889999999999975 5999999987653
No 10
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.79 E-value=8.7e-20 Score=177.86 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=102.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
.+.+|||+|++++++.+++.|++.+ +.+..+||. +|.++++.|+.|+.+||||||++|+|+|||+ ++|||+|+.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g-~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~ 263 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG-KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKS 263 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC-CcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcc
Confidence 6889999999999999999998875 889999984 7888999999999999999999999999999 999999998
Q ss_pred cceeecCCCCcccc---cceecchhhhhhhccccCCCC--CccceeccCHH
Q psy11774 105 KETRYNSKDDLVSL---DNQWISRASVNQRAGRAGRTK--PGESFHLYSED 150 (304)
Q Consensus 105 k~~~yd~~~~~~~l---~~~~isk~~~~QR~GRaGR~~--~G~c~rL~t~~ 150 (304)
+.+.|+. .+...+ ...|.|.++|.||+|||||.+ +|.||.+++..
T Consensus 264 ~~~~~~~-~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 264 VKPTILE-EGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCEEEEC-SSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccc-ccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 8887763 333333 459999999999999999986 79999999874
No 11
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.79 E-value=9.1e-20 Score=153.38 Aligned_cols=113 Identities=19% Similarity=0.301 Sum_probs=100.3
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
....++.+|||+++.+.++.+++.|.+.+ +.+..+||++++++|.++++.|..|..+|+|||+++++|+|+|++++||+
T Consensus 31 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~ 109 (163)
T 2hjv_A 31 MTENPDSCIIFCRTKEHVNQLTDELDDLG-YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN 109 (163)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE
Confidence 33456789999999999999999998865 88999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRY 152 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~ 152 (304)
||+ |.|.+++.||+||+||.+ +|.|+.+++..+.
T Consensus 110 --------~~~----------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 110 --------YDL----------PLEKESYVHRTGRTGRAGNKGKAISFVTAFEK 144 (163)
T ss_dssp --------SSC----------CSSHHHHHHHTTTSSCTTCCEEEEEEECGGGH
T ss_pred --------eCC----------CCCHHHHHHhccccCcCCCCceEEEEecHHHH
Confidence 442 346788999999999986 6999999987643
No 12
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.79 E-value=8.2e-20 Score=153.85 Aligned_cols=112 Identities=17% Similarity=0.283 Sum_probs=96.5
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
..+.+.+|||+++.+.++.+++.|...+ +.+..+||++++++|.++++.|..|..+|++||+++++|+|+|++++||+
T Consensus 27 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~- 104 (165)
T 1fuk_A 27 SISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN- 104 (165)
T ss_dssp HTTCSCEEEEESSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE-
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE-
Confidence 3457889999999999999999998765 78999999999999999999999999999999999999999999999998
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHH
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRY 152 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~ 152 (304)
||+ |.|.+++.||+||+||.+ +|.|+.++++.+.
T Consensus 105 -------~~~----------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 105 -------YDL----------PANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp -------SSC----------CSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred -------eCC----------CCCHHHHHHHhcccccCCCCceEEEEEcchHH
Confidence 443 346778899999999985 5999999987544
No 13
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.78 E-value=1.6e-19 Score=182.72 Aligned_cols=118 Identities=21% Similarity=0.191 Sum_probs=101.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
..+++|||++++++++.+++.|++.+ +.+.++||+++++++ ..+.++|+||||++|+||||| |++|||+|+
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g-~~v~~lHG~l~q~er-------~~~~~~VLVATdVaerGIDId-V~~VI~~Gl 465 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLG-INAVAYYRGLDVSVI-------PTIGDVVVVATDALMTGYTGD-FDSVIDCNT 465 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECTTSCGGGS-------CSSSCEEEEECTTHHHHCCCC-BSEEEECCE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCC-CcEEEecCCCCHHHH-------HhCCCcEEEECChHHccCCCC-CcEEEecCc
Confidence 57899999999999999999998865 889999999998752 345569999999999999997 999999999
Q ss_pred cccee----ecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHH
Q psy11774 104 HKETR----YNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRY 152 (304)
Q Consensus 104 ~k~~~----yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~ 152 (304)
.+..+ |||..++... ..|+|.++|.||+||+||.++|. |.||+++++
T Consensus 466 ~~~~ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 466 CVTQTVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp EEEEEEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred ccccccccccccccccccc-cCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 88776 4455666543 68999999999999999977899 999987543
No 14
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.78 E-value=4.6e-19 Score=172.35 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=104.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
.|.+|||+|++++++.+++.|++.+ +.+..+||.+. .++++.|+.|+.+|+||||++|+|+|||+ ++|||+|+.
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g-~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcC-CeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCc
Confidence 6789999999999999999998875 88999999754 46788889999999999999999999999 999999999
Q ss_pred cceeecCCCCcccccc---eecchhhhhhhccccCCCC--CccceeccC
Q psy11774 105 KETRYNSKDDLVSLDN---QWISRASVNQRAGRAGRTK--PGESFHLYS 148 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~---~~isk~~~~QR~GRaGR~~--~G~c~rL~t 148 (304)
+.+.|| ..+...+.. .|.|.++|.||+||+||.+ +|.||.+++
T Consensus 262 ~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 262 LKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 999998 556666766 9999999999999999988 689988764
No 15
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.76 E-value=6.6e-19 Score=170.83 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=97.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
++.+|||+|++++++.+++.|++.+ +.+..+|| ++|.++++.|..|+.+|+|||+++|+|+||| +++|||+|+.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~-~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~ 250 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG-KSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTA 250 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCcc
Confidence 6789999999999999999998874 88999999 4688899999999999999999999999999 9999999999
Q ss_pred cceee-cCCCCcccccceecchhhhhhhccccCCC--CCccceeccC
Q psy11774 105 KETRY-NSKDDLVSLDNQWISRASVNQRAGRAGRT--KPGESFHLYS 148 (304)
Q Consensus 105 k~~~y-d~~~~~~~l~~~~isk~~~~QR~GRaGR~--~~G~c~rL~t 148 (304)
+.+.| +...++......|.|.+++.||+||+||. .+|.||.+++
T Consensus 251 ~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 251 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 98887 44445666667899999999999999997 3799999974
No 16
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=3.5e-19 Score=151.42 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=100.1
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeE
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAY 97 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~ 97 (304)
++.+..+.+.+|||+++.+.++.+++.|...+ +.+..+||++++++|.++++.|..|..+|+|||+++++|+|+|++++
T Consensus 24 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~ 102 (172)
T 1t5i_A 24 DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 102 (172)
T ss_dssp HHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSE
T ss_pred HHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC-CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCE
Confidence 33344456789999999999999999998865 78999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHH
Q psy11774 98 VVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSED 150 (304)
Q Consensus 98 VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~ 150 (304)
||+ ||+ |.|.+++.||+||+||.+ +|.|+.+++..
T Consensus 103 Vi~--------~d~----------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 103 AFN--------YDM----------PEDSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp EEE--------SSC----------CSSHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred EEE--------ECC----------CCCHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 998 443 346788999999999976 59999999854
No 17
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.75 E-value=6.2e-19 Score=151.74 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=85.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
+.+.+|||+++.+.++.+++.|...+ +.+..+||++++.+|.++++.|..|..+|+|||+++++|+|+|++++||+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--- 120 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--- 120 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTT-CCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE---
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcC-CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE---
Confidence 56789999999999999999998865 88999999999999999999999999999999999999999999999998
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRY 152 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~ 152 (304)
||++ .|.+++.||+||+||.+ +|.|+.++++.+.
T Consensus 121 -----~d~p----------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 121 -----FDLP----------SDIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp -----SSCC----------SSHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred -----eCCC----------CCHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 4433 46778999999999986 6999999987653
No 18
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.75 E-value=6.2e-19 Score=152.65 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=94.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
++.+|||+++.+.++.+++.|...+ +.+..+||++++++|.++++.|..|..+|+|||+++++|+|+|++++||+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~---- 128 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN---- 128 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----
Confidence 5679999999999999999998764 78999999999999999999999999999999999999999999999998
Q ss_pred cceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHH
Q psy11774 105 KETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSED 150 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~ 150 (304)
||+ |.+.+++.||+||+||.+ +|.|+.+++..
T Consensus 129 ----~d~----------p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 129 ----YDM----------PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp ----SSC----------CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred ----eCC----------CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 543 346778899999999986 59999999864
No 19
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.74 E-value=6.9e-19 Score=178.50 Aligned_cols=135 Identities=17% Similarity=0.178 Sum_probs=84.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCC---cEEEEe--------cCCCCHHHHhhhhcCCCC-CCeEEEEeccccccCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPG---LLVTMA--------HSKLDTEVQGAIFGHPPP-GMRKVVLSTNVAETSI 90 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~---~~v~~l--------hs~l~~~~q~~~~~~~~~-g~~kvilaTniae~si 90 (304)
.+.+.+|||++++++++.+++.|.+.+. +.+..+ ||+|++++|.++++.|.. |..+|+|||+++|+||
T Consensus 396 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~Gi 475 (696)
T 2ykg_A 396 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 475 (696)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC-
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCC
Confidence 3567899999999999999999987642 677777 569999999999999998 9999999999999999
Q ss_pred CCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHH----------hhhhhcCC
Q psy11774 91 TIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRY----------RRMAEYSL 160 (304)
Q Consensus 91 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~----------~~~~~~~~ 160 (304)
|||+|++||+ ||++ .|.+++.||+|| ||.++|.||.|+++.+. +.+.....
T Consensus 476 Dip~v~~VI~--------~d~p----------~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~ 536 (696)
T 2ykg_A 476 DIAQCNLVIL--------YEYV----------GNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSI 536 (696)
T ss_dssp --CCCSEEEE--------ESCC------------CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCCEEEE--------eCCC----------CCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 6654 345567799999 99999999999998766 44566777
Q ss_pred CcccccchHHHHHHhh
Q psy11774 161 PEIFRKPLEQILLTCK 176 (304)
Q Consensus 161 pei~r~~L~~~~L~lk 176 (304)
|++.+.+.+.++.+++
T Consensus 537 ~~~~~~~~~~~~~~i~ 552 (696)
T 2ykg_A 537 LRLQTWDEAVFREKIL 552 (696)
T ss_dssp HHHTTSCHHHHHHHHH
T ss_pred HHhhccCHHHHHHHHH
Confidence 8888888887766665
No 20
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.74 E-value=1.3e-18 Score=175.64 Aligned_cols=118 Identities=16% Similarity=0.210 Sum_probs=105.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
.+++|||++++++++.+++.|++.+ +.+..+||. +|.++++.|+.|+.+||||||++|+||||| |++|||+|+.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcC-CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 6789999999999999999998875 889999984 677788889999999999999999999997 9999999998
Q ss_pred cceee--cCCCCcccccceecchhhhhhhccccCCCC--CccceeccC
Q psy11774 105 KETRY--NSKDDLVSLDNQWISRASVNQRAGRAGRTK--PGESFHLYS 148 (304)
Q Consensus 105 k~~~y--d~~~~~~~l~~~~isk~~~~QR~GRaGR~~--~G~c~rL~t 148 (304)
+.+.+ +...++......|+|.++|.||+||+||.+ +|.||.+++
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 88776 444456677788999999999999999985 799999997
No 21
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.59 E-value=1.4e-19 Score=153.23 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=102.3
Q ss_pred hccCCCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCee
Q psy11774 17 THFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVA 96 (304)
Q Consensus 17 ~~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~ 96 (304)
.++......+.+|||+++.+.++.+++.|+..+ +.+..+||++++++|.++++.|..|..+|+|||+++++|+|+|+++
T Consensus 22 ~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~ 100 (170)
T 2yjt_D 22 VHLLKQPEATRSIVFVRKRERVHELANWLREAG-INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVS 100 (170)
Confidence 344455567889999999999999999998764 8899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 97 YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
+||+ ||+ |.|.+++.||+||+||.+ +|.|+.+++..+..
T Consensus 101 ~Vi~--------~~~----------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 101 HVFN--------FDM----------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 9998 442 346677889999999986 59999999876543
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.73 E-value=7.1e-19 Score=166.50 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=88.2
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
....+.+|||++++++++.+++.|.+.+ +.+..+||++++++|.++++.|..|..+|+|||+++++|+|+|++++||+.
T Consensus 277 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~ 355 (414)
T 3eiq_A 277 TLTITQAVIFINTRRKVDWLTEKMHARD-FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 355 (414)
T ss_dssp SSCCSSCEEECSCHHHHHHHHHHHHTTT-CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEES
T ss_pred hCCCCcEEEEeCCHHHHHHHHHHHHhcC-CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEe
Confidence 3456789999999999999999998865 789999999999999999999999999999999999999999999999984
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
+. |.|.+++.||+||+||.+ +|.||.++++.+..
T Consensus 356 ~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 390 (414)
T 3eiq_A 356 DL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKR 390 (414)
T ss_dssp SC------------------CSSTHHHHHHSCCC-------CEEEEECSTHHH
T ss_pred CC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHHH
Confidence 43 347788999999999986 59999999986654
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.73 E-value=4.6e-18 Score=160.60 Aligned_cols=115 Identities=18% Similarity=0.215 Sum_probs=101.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
..+.+|||+++.++++.+++.|.+.+ +.+..+||+++.++|.++++.|..|+.+|+|||+++++|+|+|++++||+.+.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 343 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 343 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCC-CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECC
Confidence 46789999999999999999998875 78999999999999999999999999999999999999999999999998665
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
+..+.+ +.|.+++.||+||+||.+. |.|+.+++...
T Consensus 344 p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 344 PVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp CBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CCCCCC------------CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 433221 3577899999999999765 99999998543
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.73 E-value=5.8e-18 Score=158.61 Aligned_cols=117 Identities=23% Similarity=0.262 Sum_probs=102.5
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
.....+.+|||+++.++++.+++.|++.+ +.+..+||+++.++|.++++.|..|+.+|+|||+++++|+|+|++++||+
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 317 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSEG-HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN 317 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE
Confidence 34456899999999999999999998865 78999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSED 150 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~ 150 (304)
.+.+. +...+.|.+++.||+||+||.+. |.|+.+++..
T Consensus 318 ~~~p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 318 YDLPT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp SSCCB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred cCCCC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 55432 22345789999999999999875 9999998854
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.72 E-value=4.3e-18 Score=161.45 Aligned_cols=112 Identities=17% Similarity=0.182 Sum_probs=98.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
...+.+|||+++.++++.+++.|.+.+ +.+..+||++++++|.++++.|..|+.+|+|||+++++|+|+|++++||+.+
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~ 352 (417)
T 2i4i_A 274 GKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD 352 (417)
T ss_dssp CTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESS
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCC-CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEc
Confidence 356789999999999999999998865 7899999999999999999999999999999999999999999999999844
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
. |.|.+++.||+||+||.+ +|.|+.++++.+..
T Consensus 353 ~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 353 L------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp C------------------CSSHHHHHHHHTTBCC--CCEEEEEEECGGGGG
T ss_pred C------------------CCCHHHHHHhcCccccCCCCceEEEEEccccHH
Confidence 3 347788999999999986 49999999987654
No 26
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.72 E-value=7.7e-18 Score=171.32 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=106.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
..+.+|||+|++++++.+++.|++.+ +.+..+||+ +|.++++.|..|+.+|+||||++|+||||| +++|||+|.
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g-~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAG-KRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCC-CeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCC
Confidence 46889999999999999999998874 889999993 788899999999999999999999999999 999999998
Q ss_pred cccee--ecCCCCcccccceecchhhhhhhccccCCC--CCccceeccC
Q psy11774 104 HKETR--YNSKDDLVSLDNQWISRASVNQRAGRAGRT--KPGESFHLYS 148 (304)
Q Consensus 104 ~k~~~--yd~~~~~~~l~~~~isk~~~~QR~GRaGR~--~~G~c~rL~t 148 (304)
...+. ||...++..+...|.|.++|.||+||+||. ++|.||.++.
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 76653 677667777778999999999999999998 3699999974
No 27
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.72 E-value=5.5e-18 Score=163.88 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=103.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCH 104 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~ 104 (304)
+|++|||+|++++++.+++.|++. ++.+..+||+ ++.++++.|..|+.+|+|||+++|+|+||| +.+|||+|..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~ 244 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKT 244 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcc
Confidence 678999999999999999999887 4889999997 566788888899999999999999999999 9999999999
Q ss_pred cceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccC
Q psy11774 105 KETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYS 148 (304)
Q Consensus 105 k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t 148 (304)
+.+.|| ..++......|.|.+++.||+||+||.++ +.|+.+|.
T Consensus 245 ~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 245 IKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999999 66777777899999999999999999874 44555553
No 28
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.72 E-value=1.5e-17 Score=167.03 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=101.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
...+.+|||++++++++.+++.|...+ +.+.++||+|++++|.++++.|..|+.+|||||+++++|||+|+|++||+.+
T Consensus 265 ~~~~~~IVf~~sr~~~e~la~~L~~~g-~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 265 YKGQSGIIYCFSQKDSEQVTVSLQNLG-IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESS
T ss_pred ccCCCeEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeC
Confidence 356789999999999999999998865 8899999999999999999999999999999999999999999999999844
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHhh
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYRR 154 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~~ 154 (304)
.+ -|.++|.||+|||||.+ +|.|+.+|+..+...
T Consensus 344 ~p------------------~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 344 MS------------------KSMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp CC------------------SSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred CC------------------CCHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 33 37788999999999986 699999999887653
No 29
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.71 E-value=1.1e-17 Score=158.03 Aligned_cols=112 Identities=13% Similarity=0.204 Sum_probs=100.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
...+.+|||+++.++++.+++.|.+.+ +.+..+||+++.++|.++++.|..|+.+|+|||+++++|+|+|++++||+.+
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDLG-YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD 334 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESS
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhcC-CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeC
Confidence 356789999999999999999998765 7899999999999999999999999999999999999999999999999843
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
. |.|.+++.||+||+||.+ +|.|+.++++++..
T Consensus 335 ~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~ 368 (400)
T 1s2m_A 335 F------------------PKTAETYLHRIGRSGRFGHLGLAINLINWNDRF 368 (400)
T ss_dssp C------------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHH
T ss_pred C------------------CCCHHHHHHhcchhcCCCCCceEEEEeccchHH
Confidence 2 347788999999999985 69999999987654
No 30
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.70 E-value=1.1e-17 Score=155.17 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=101.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
..++.+|||+++.++++.+++.|++.+ +.+..+||+++.++|.++++.|..|+.+|+|||+++++|+|+|++++||+.+
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIG-FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYH 314 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESS
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEec
Confidence 456789999999999999999998875 7899999999999999999999999999999999999999999999999844
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
. |.|..++.||+||+||.+ +|.|+.+++++++.
T Consensus 315 ~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 348 (367)
T 1hv8_A 315 L------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYK 348 (367)
T ss_dssp C------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHH
T ss_pred C------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHH
Confidence 3 347789999999999986 69999999987654
No 31
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.70 E-value=2.2e-17 Score=163.40 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=100.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
..+.+|||++++++++.+++.|.+.+ +.+.++||++++++|.++++.|..|+.+|||||+++++|||+|+|++||+.+.
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~ 313 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKG-ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC
Confidence 56789999999999999999998875 78999999999999999999999999999999999999999999999998443
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
|.|.++|.||+|||||.+ +|.|+.+|+.++..
T Consensus 314 ------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 314 ------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp ------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred ------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 347789999999999987 69999999988764
No 32
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.70 E-value=1.6e-17 Score=160.27 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=95.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCcc
Q psy11774 26 GAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHK 105 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k 105 (304)
+.+|||++++++++.+++.|.+.+ +.+..+||++++++|.++++.|..|+.+|+|||+++++|+|||+|++||+
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----- 374 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEKE-FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----- 374 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT-CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE-----
T ss_pred CCEEEEEeCcHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE-----
Confidence 349999999999999999998865 88999999999999999999999999999999999999999999999998
Q ss_pred ceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCH
Q psy11774 106 ETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSE 149 (304)
Q Consensus 106 ~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~ 149 (304)
||.+ .|.++|.||+||+||.+ .|.|+.+++.
T Consensus 375 ---~d~p----------~~~~~y~qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 375 ---YDMP----------SKIDDYVHRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp ---SSCC----------SSHHHHHHHHTTSSCTTCCEEEEEEECT
T ss_pred ---ECCC----------CCHHHHHHHhcccccCCCCCEEEEEEec
Confidence 4433 36778999999999986 4999999984
No 33
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.70 E-value=1.4e-17 Score=157.96 Aligned_cols=111 Identities=17% Similarity=0.253 Sum_probs=99.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
..+.+|||+++.++++.+++.|.+.+ +.+..+||++++++|.++++.|..|+.+|+|||+++++|+|+|++++||+.+.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCC-CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 45789999999999999999998865 78999999999999999999999999999999999999999999999998442
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
|.|.+++.||+||+||.+ +|.|+.++++++..
T Consensus 354 ------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 354 ------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp ------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred ------------------CCCHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 346788999999999985 59999999987644
No 34
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.68 E-value=7.6e-17 Score=151.38 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=98.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
...+.+|||+++.++++.+++.|.+.+ +.+..+||+++.++|.++++.|..|+.+|+|||+++++|+|+|++++||+.+
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESS
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 356889999999999999999998865 7899999999999999999999999999999999999999999999999844
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHH
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDR 151 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~ 151 (304)
. |.|.+++.||+||+||.+ +|.|+.+++.++
T Consensus 327 ~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 327 M------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp C------------------CSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred C------------------CCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 3 247788999999999985 599999998654
No 35
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.67 E-value=6.6e-17 Score=160.19 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=99.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
...+.+|||++++++++.+++.|.+. .++.+..+||++++++|.++++.|..|+.+|+|||+++++|||+|+|++||+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE
Confidence 55778999999999999999999764 2588999999999999999999999999999999999999999999999997
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
||.+ .|..+|.||+|||||.+ +|.|+.++++.+..
T Consensus 417 --------~~~p----------~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 417 --------IGVP----------SELANYIHRIGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp --------ESCC----------SSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred --------ECCC----------CchhhhhhhcCccccCCCCceEEEEEchhHHH
Confidence 4433 36778899999999987 59999999876543
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.66 E-value=7.4e-18 Score=163.97 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
.....+.+|||+++++.++.+++.|...+ +.+..+||++++.+|.++++.|..|+.+|+|||+++++|+|+|+|++||+
T Consensus 329 ~~~~~~~~lvF~~s~~~~~~l~~~L~~~~-~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 329 GAITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccCCceEEEeCcHHHHHHHHHHHHhCC-ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 34456789999999999999999998764 78999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-ccceeccCHHH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYSEDR 151 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G~c~rL~t~~~ 151 (304)
.+++.... .+.|..+|.||+|||||.+. |.|+.+++...
T Consensus 408 ~d~p~~~~------------~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 408 FDLPVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ----------------------------------------------------
T ss_pred ecCCCCCc------------cCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 55432221 13467789999999999765 99999998654
No 37
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1.4e-16 Score=159.00 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=99.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
...+.+|||++++++++.+++.|.+. .++.+..+||++++++|.++++.|..|+.+|+|||+++++|||+|+|++||+
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~ 365 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 365 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE
Confidence 45778999999999999999999764 2578999999999999999999999999999999999999999999999997
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRY 152 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~ 152 (304)
||++ .|.++|.||+|||||.+ +|.|+.++++.+.
T Consensus 366 --------~~~p----------~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 366 --------IGVP----------SELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp --------ESCC----------SSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred --------cCCC----------CCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 4433 36678999999999987 5999999987654
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.65 E-value=8.3e-17 Score=157.50 Aligned_cols=112 Identities=19% Similarity=0.239 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCC-----------CcEEEEecCCCCHHHHhhhhcCCCC-CCeEEEEeccccccCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIP-----------GLLVTMAHSKLDTEVQGAIFGHPPP-GMRKVVLSTNVAETSI 90 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~-----------~~~v~~lhs~l~~~~q~~~~~~~~~-g~~kvilaTniae~si 90 (304)
.+.+.+|||+++.+.++.+.+.|...+ +.....+||+|++++|.++++.|.. |..+|+|||+++++||
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 456889999999999999999998653 2345556779999999999999998 9999999999999999
Q ss_pred CCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 91 TIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 91 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
|+|+|++||+ ||++. |..++.||+|| ||..+|.||.|+++.+.+
T Consensus 467 Dlp~v~~VI~--------~d~p~----------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 467 DIAECNLVIL--------YEYVG----------NVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp ETTSCSEEEE--------ESCCS----------SCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred ccccCCEEEE--------eCCCC----------CHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 9999999997 77554 44556799999 999899999999987553
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.64 E-value=4.1e-16 Score=172.19 Aligned_cols=218 Identities=12% Similarity=0.052 Sum_probs=152.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC-------C--------------------------CcEEEEecCCCCHHHHhhhh
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI-------P--------------------------GLLVTMAHSKLDTEVQGAIF 69 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~-------~--------------------------~~~v~~lhs~l~~~~q~~~~ 69 (304)
.+.+++|||++++.+++.++..|... . ...|..+||+|++++|..+.
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 45678999999999999887665210 0 02488899999999999999
Q ss_pred cCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---Cccceec
Q psy11774 70 GHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGESFHL 146 (304)
Q Consensus 70 ~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c~rL 146 (304)
+.|..|..+|++||+.++.||++|.+.+||..- ..||.... ...+.|..++.||+|||||.+ .|.|+.+
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT----QYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECS----EEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHCCCCeEEEEChHHHcCCCCCccEEEEecC----ccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEE
Confidence 999999999999999999999999999999632 34665433 335778999999999999976 5999999
Q ss_pred cCHHH---HhhhhhcCCCcccccc----hHHHHHHhh-cCCCccCCcccccccccCC----------------------C
Q psy11774 147 YSEDR---YRRMAEYSLPEIFRKP----LEQILLTCK-VGESLYSTERCSSFLSQLP----------------------E 196 (304)
Q Consensus 147 ~t~~~---~~~~~~~~~pei~r~~----L~~~~L~lk-~~~~~~~~~~~~~fl~~~~----------------------~ 196 (304)
++... |..+-.. |+-..+. +...++..- .+.- .+..+..+|+..++ +
T Consensus 1305 ~~~~~~~~~~~ll~~--~~pveS~L~~~l~~~l~~eI~~~~i-~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~ 1381 (1724)
T 4f92_B 1305 CQGSKKDFFKKFLYE--PLPVESHLDHCMHDHFNAEIVTKTI-ENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLS 1381 (1724)
T ss_dssp EEGGGHHHHHHHTTS--CBCCCCCGGGSCHHHHHHHHHTTSC-CBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHH
T ss_pred ecchHHHHHHHHhCC--CCceeeecccchHHHHHHHHHhccc-CCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHH
Confidence 77643 3333222 2222232 333333222 2221 01122333332211 1
Q ss_pred CCCHHHHHHHHHHHHHcCCcc--cCC--CcccchhhhccCCCchhhhHHHHHhhccCCc
Q psy11774 197 PPDPASITSAATELKLMGVFD--QEE--NLTPLGKRIAAMPCHPKLSKALVESVIYKGN 251 (304)
Q Consensus 197 pP~~~~l~~al~~L~~lgald--~~~--~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~ 251 (304)
..-.+.+..+++.|...|+|. +++ ..|++|++++.++++|.-++++..+..-++.
T Consensus 1382 ~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~ 1440 (1724)
T 4f92_B 1382 DHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTK 1440 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCC
Confidence 112344778999999999995 444 3589999999999999999999987665543
No 40
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.64 E-value=1.2e-17 Score=156.75 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
....+.+|||+++.++++.+++.|++.+ +.+..+||+++.++|.++++.|..|..+|+|||+++++|+|+|++++||+.
T Consensus 256 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~ 334 (394)
T 1fuu_A 256 SISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINY 334 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHHcC-CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 3456789999999999999999998764 789999999999999999999999999999999999999999999999984
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHHHh
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDRYR 153 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~~~ 153 (304)
+. |.|.+++.||+||+||.+ +|.|+.++++++..
T Consensus 335 ~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 369 (394)
T 1fuu_A 335 DL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 369 (394)
T ss_dssp -----------------------------------------------------
T ss_pred CC------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHH
Confidence 42 346778899999999985 69999999987654
No 41
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.64 E-value=8.4e-17 Score=170.15 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=98.2
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCC--------------------------------------cEEEEecCCCCHH
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPG--------------------------------------LLVTMAHSKLDTE 63 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~--------------------------------------~~v~~lhs~l~~~ 63 (304)
....+++|||++++++++.+++.|.+.+- ..+.++||+|++.
T Consensus 333 ~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~ 412 (997)
T 4a4z_A 333 KRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPI 412 (997)
T ss_dssp HTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHH
Confidence 34568999999999999999998865320 1478999999999
Q ss_pred HHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---C
Q psy11774 64 VQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---P 140 (304)
Q Consensus 64 ~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~ 140 (304)
+|..+++.|..|..+|+|||+++++|||+|+ ++||..+..+ ||.. ...|+|.++|.||+|||||.+ +
T Consensus 413 ~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~ 482 (997)
T 4a4z_A 413 VKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDST 482 (997)
T ss_dssp HHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSS
T ss_pred HHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHHhcccccCCCCcc
Confidence 9999999999999999999999999999999 5556556554 5533 235899999999999999976 6
Q ss_pred ccceeccC
Q psy11774 141 GESFHLYS 148 (304)
Q Consensus 141 G~c~rL~t 148 (304)
|.||.++.
T Consensus 483 G~vi~l~~ 490 (997)
T 4a4z_A 483 GTVIVMAY 490 (997)
T ss_dssp EEEEEECC
T ss_pred eEEEEecC
Confidence 99999984
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.63 E-value=1.1e-16 Score=157.05 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCC-----------CcEEEEecCCCCHHHHhhhhcCCCC-CCeEEEEeccccccCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIP-----------GLLVTMAHSKLDTEVQGAIFGHPPP-GMRKVVLSTNVAETSI 90 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~-----------~~~v~~lhs~l~~~~q~~~~~~~~~-g~~kvilaTniae~si 90 (304)
.+.+.+|||+++++.++.+.+.|.+.+ +.....+||++++++|.++++.|.. |..+|+|||+++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 456889999999999999999997652 2455667889999999999999999 9999999999999999
Q ss_pred CCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 91 TIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 91 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
|+|+|++||+ ||++ -|..++.||+|| ||.++|.||.|+++...+
T Consensus 468 Dip~v~~VI~--------~d~p----------~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 468 DIVQCNLVVL--------YEYS----------GNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CEEEE--------ETCC----------SCHHHHHHC---------CCEEEEESCHHHH
T ss_pred CchhCCEEEE--------eCCC----------CCHHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 9999999997 7654 366788899999 999999999999987654
No 43
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1e-16 Score=170.93 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=97.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCC--C------------------------------------cEEEEecCCCCHHH
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIP--G------------------------------------LLVTMAHSKLDTEV 64 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~--~------------------------------------~~v~~lhs~l~~~~ 64 (304)
...+.+|||++++++++.++..|...+ . ..|.++||+|++.+
T Consensus 439 ~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~ 518 (1108)
T 3l9o_A 439 KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 518 (1108)
T ss_dssp TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHH
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHH
Confidence 446789999999999999998885311 0 01899999999999
Q ss_pred HhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---Cc
Q psy11774 65 QGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PG 141 (304)
Q Consensus 65 q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G 141 (304)
|..+++.|..|..+|||||+++++|||||++++||+... .||.. ...|+|.++|.||+|||||.+ +|
T Consensus 519 R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G 588 (1108)
T 3l9o_A 519 KEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRG 588 (1108)
T ss_dssp HHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSS------CEEECCHHHHHHHHHHSCCSSSCSSE
T ss_pred HHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc----ccCcc------ccccCCHHHHHHhhcccCCCCCCCce
Confidence 999999999999999999999999999999999997443 24433 246899999999999999988 79
Q ss_pred cceeccCHH
Q psy11774 142 ESFHLYSED 150 (304)
Q Consensus 142 ~c~rL~t~~ 150 (304)
.||.++++.
T Consensus 589 ~~ill~~~~ 597 (1108)
T 3l9o_A 589 IVIMMIDEK 597 (1108)
T ss_dssp EEEEEECCC
T ss_pred EEEEEecCC
Confidence 999999864
No 44
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.61 E-value=2.4e-16 Score=150.28 Aligned_cols=112 Identities=22% Similarity=0.241 Sum_probs=97.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecC--------CCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHS--------KLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD 94 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs--------~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~ 94 (304)
..++.+|||+++.+.++.+.+.|.+.+ +.+..+|| +++.++|.++++.|..|..+|+|||++++.|+|+|+
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~ 437 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKDG-IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPE 437 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTT-CCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTT
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHcC-CCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchh
Confidence 457889999999999999999998874 88999999 999999999999999999999999999999999999
Q ss_pred eeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 95 VAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 95 V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
+++||. ||+ |-+.+++.||+||+||.++|.+|+|+++...+
T Consensus 438 ~~~Vi~--------~d~----------~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 438 VDLVVF--------YEP----------VPSAIRSIQRRGRTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp CCEEEE--------SSC----------CHHHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred CCEEEE--------eCC----------CCCHHHHHHHHhhccCCCCceEEEEEecCCHH
Confidence 999997 442 23677899999999999999999999986544
No 45
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.61 E-value=2.4e-16 Score=144.62 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=92.1
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~ 101 (304)
....+.+|||+++.++++.+.+.|. .+..+||+++.++|.++++.|..|+.+|+|||+++++|+|+|++++||+.
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~ 291 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD-----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINF 291 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEES
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEe
Confidence 3457889999999999999988875 47889999999999999999999999999999999999999999999984
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccC
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYS 148 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t 148 (304)
+. |.|.+++.||+||+||.+ +|.|+.+++
T Consensus 292 ~~------------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 292 DA------------------PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp SC------------------CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred cC------------------CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 42 236788999999999985 599999887
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.60 E-value=6e-16 Score=170.86 Aligned_cols=221 Identities=14% Similarity=0.148 Sum_probs=153.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC------------------------------------CCcEEEEecCCCCHHHHh
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI------------------------------------PGLLVTMAHSKLDTEVQG 66 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~------------------------------------~~~~v~~lhs~l~~~~q~ 66 (304)
...+++|||++++++++.+++.|.+. -...|...||+|+.++|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 34678999999999999988877320 012377899999999999
Q ss_pred hhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---Cccc
Q psy11774 67 AIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGES 143 (304)
Q Consensus 67 ~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c 143 (304)
.+.+.|..|..+|++||+.++.||++|.+++||.. ...||+..+. ..++|.+++.||+|||||.+ .|.+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ 466 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEG 466 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEE
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEE
Confidence 99999999999999999999999999999999852 3458887663 36789999999999999965 5999
Q ss_pred eeccCHHH---HhhhhhcCCC--cccccchHHHHHHhh-cCCCccCCcccccccccC-----------------------
Q psy11774 144 FHLYSEDR---YRRMAEYSLP--EIFRKPLEQILLTCK-VGESLYSTERCSSFLSQL----------------------- 194 (304)
Q Consensus 144 ~rL~t~~~---~~~~~~~~~p--ei~r~~L~~~~L~lk-~~~~~~~~~~~~~fl~~~----------------------- 194 (304)
+.+.++++ |..+-....| .-....+.+.++.-- +|.- .+.....+|+..+
T Consensus 467 ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i-~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d 545 (1724)
T 4f92_B 467 ILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNV-QNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGD 545 (1724)
T ss_dssp EEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSC-CBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHC
T ss_pred EEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhc-CCHHHHHHHHhccHHHHHhhhChhhhccCccccccc
Confidence 98877643 3333222222 111123333333222 2221 0011122222111
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCcccC---C--CcccchhhhccCCCchhhhHHHHHhhccCCcc
Q psy11774 195 --PEPPDPASITSAATELKLMGVFDQE---E--NLTPLGKRIAAMPCHPKLSKALVESVIYKGNC 252 (304)
Q Consensus 195 --~~pP~~~~l~~al~~L~~lgald~~---~--~lT~lG~~l~~lpl~p~~~k~l~~~~~~~C~~ 252 (304)
++....+.+..|+..|...|+|..+ | ..|++|+.++++.++|.-.+.+.....-.+.+
T Consensus 546 ~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~ 610 (1724)
T 4f92_B 546 PLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSE 610 (1724)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCH
Confidence 0111123477899999999999532 2 57999999999999999999998876655544
No 47
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.59 E-value=1.9e-15 Score=153.59 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=100.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
.++.+|||+++...++.+.+.|.+.+ +.+..+||++++.+|.++++.+..|..+|++|||++++|+++|+|++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~ 516 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG-IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDA 516 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC-CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCC
Confidence 45789999999999999999998875 78899999999999999999999999999999999999999999999998654
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSED 150 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~ 150 (304)
.+. ..|.|..++.||+|||||.++|.|+.++++.
T Consensus 517 d~~-------------G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 517 DKE-------------GFLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp TSC-------------SGGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred ccc-------------CCCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 321 1255788999999999999999999998764
No 48
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.58 E-value=2.7e-16 Score=154.79 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=82.0
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEe
Q psy11774 21 CPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 21 ~~~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID 100 (304)
.....+.+|||++++++++.+++.|.+.+ ..+..+||+++.++|.++++.|..|+.+|+|||+++++|+|+|++++||+
T Consensus 353 ~~~~~~~~LVF~~s~~~a~~l~~~L~~~~-~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 353 GLLTIGQSIIFCKKKDTAEEIARRMTADG-HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp C---CCCEEEBCSSTTTTTHHHHHHTTTT-CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 34467899999999999999999998754 78999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSE 149 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~ 149 (304)
.+.+... ..+-|..++.||+||+||.+ +|.|+.+++.
T Consensus 432 ~~~p~~~------------~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~ 469 (508)
T 3fho_A 432 YDMPLDQ------------AGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 469 (508)
T ss_dssp ----CC-----------------CTHHHHHTTSCCC-----CEEEEEECT
T ss_pred ECCCCcc------------cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeC
Confidence 4433211 11246788999999999987 5999999874
No 49
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.58 E-value=1.9e-15 Score=153.62 Aligned_cols=113 Identities=21% Similarity=0.175 Sum_probs=99.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~ 103 (304)
.++.+|||+++...++.+.+.|.+.+ +.+..+||++++.+|.++++.++.|+.+|++|||++++|+++|+|++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~ 522 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG-IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDA 522 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC-CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCc
Confidence 45789999999999999999998875 78899999999999999999888999999999999999999999999998554
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHH
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSED 150 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~ 150 (304)
.+. | .|.|..++.||+||+||.++|.|+.++++.
T Consensus 523 d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 523 DKE-------G------FLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp TCC-------T------TTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred ccc-------c------CCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 221 1 245778999999999999889999998764
No 50
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.57 E-value=9.6e-16 Score=155.47 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=84.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEecCC--------CCHHHHhhhhcCCCCCCeEEEEeccccccCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-----PGLLVTMAHSK--------LDTEVQGAIFGHPPPGMRKVVLSTNVAETSIT 91 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-----~~~~v~~lhs~--------l~~~~q~~~~~~~~~g~~kvilaTniae~sit 91 (304)
.+.+|||+++++.++.+.+.|.+. .++.+..+||+ |++++|.++++.|..|..+|+|||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 788999999999999999999875 14889999999 99999999999999999999999999999999
Q ss_pred CCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceecc
Q psy11774 92 IDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLY 147 (304)
Q Consensus 92 I~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~ 147 (304)
+|+|++||+ ||++ -|.+++.||+|||||.+ .++.++
T Consensus 480 ip~v~~VI~--------~d~p----------~s~~~~~Qr~GRArr~g--~~~~l~ 515 (699)
T 4gl2_A 480 IKECNIVIR--------YGLV----------TNEIAMVQARGRARADE--STYVLV 515 (699)
T ss_dssp CCSCCCCEE--------ESCC----------CCHHHHHHHHTTSCSSS--CEEEEE
T ss_pred cccCCEEEE--------eCCC----------CCHHHHHHHcCCCCCCC--ceEEEE
Confidence 999999996 7654 35678889999988754 444443
No 51
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.55 E-value=2.2e-15 Score=155.88 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=61.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCC-----------CcEEEEecCCCCHHHHhhhhcCCCC-CCeEEEEeccccccCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIP-----------GLLVTMAHSKLDTEVQGAIFGHPPP-GMRKVVLSTNVAETSI 90 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~-----------~~~v~~lhs~l~~~~q~~~~~~~~~-g~~kvilaTniae~si 90 (304)
.+++.+|||+++++.++.+.+.|++.+ +.....+||++++++|.++++.|.. |..+|+|||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 456889999999999999999997642 2456677999999999999999998 9999999999999999
Q ss_pred CCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHHh
Q psy11774 91 TIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 91 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~~ 153 (304)
|||+|++||+ ||++ -|..++.||+|| ||.++|.||.|+++.+.+
T Consensus 709 Dlp~v~~VI~--------yd~p----------~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 709 DIVQCNLVVL--------YEYS----------GNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCCSEEEE--------ESCC----------SCHHHHHTC--------CCCEEEEECCHHHH
T ss_pred CchhCCEEEE--------eCCC----------CCHHHHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 9999999997 7654 366788899999 999999999999986543
No 52
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.53 E-value=7.5e-15 Score=155.38 Aligned_cols=117 Identities=19% Similarity=0.230 Sum_probs=99.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCC--------------------------------------cEEEEecCCCCHHHH
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPG--------------------------------------LLVTMAHSKLDTEVQ 65 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~--------------------------------------~~v~~lhs~l~~~~q 65 (304)
..+.+|||++++.+++.+++.|...+- ..|..+||+|++.+|
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR 421 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 421 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHH
Confidence 345899999999999999988865210 128889999999999
Q ss_pred hhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC---Ccc
Q psy11774 66 GAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGE 142 (304)
Q Consensus 66 ~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~ 142 (304)
..+++.|..|..+|+|||+++++|||+|++++||+. ...||... ..|+|.++|.||+|||||.+ .|.
T Consensus 422 ~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~ 491 (1010)
T 2xgj_A 422 EVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGI 491 (1010)
T ss_dssp HHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEE
T ss_pred HHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------CccCCHHHHhHhhhhcccCCCCCceE
Confidence 999999999999999999999999999999999973 23366432 36889999999999999987 499
Q ss_pred ceeccCHH
Q psy11774 143 SFHLYSED 150 (304)
Q Consensus 143 c~rL~t~~ 150 (304)
||.++++.
T Consensus 492 vi~l~~~~ 499 (1010)
T 2xgj_A 492 VIMMIDEK 499 (1010)
T ss_dssp EEEEECSC
T ss_pred EEEEECCC
Confidence 99999854
No 53
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.52 E-value=8.1e-15 Score=154.23 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcCC-----------CcEEEEecCCCCHHHHhhhhcCCCC-CCeEEEEeccccccC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAIP-----------GLLVTMAHSKLDTEVQGAIFGHPPP-GMRKVVLSTNVAETS 89 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~~-----------~~~v~~lhs~l~~~~q~~~~~~~~~-g~~kvilaTniae~s 89 (304)
...++.+|||+++++.++.+.+.|.+.+ +.....+||++++.+|.++++.|.. |..+|+|||+++++|
T Consensus 628 ~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eG 707 (936)
T 4a2w_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEG 707 (936)
T ss_dssp SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC----
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcC
Confidence 3457889999999999999999998652 2455667999999999999999998 999999999999999
Q ss_pred CCCCCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCCccceeccCHHHH
Q psy11774 90 ITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRY 152 (304)
Q Consensus 90 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~c~rL~t~~~~ 152 (304)
||||+|++||+ ||++ -|..++.||+|| ||.++|.||.|+++...
T Consensus 708 IDlp~v~~VI~--------yD~p----------~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 708 IDIVQCNLVVL--------YEYS----------GNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp --CCCCSEEEE--------ESCC----------SCSHHHHCC--------CCCEEEEESCHHH
T ss_pred CcchhCCEEEE--------eCCC----------CCHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 99999999997 7754 356678899999 99999999999997644
No 54
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.49 E-value=1.4e-14 Score=138.06 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=86.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEE-EecCCCCHHHHhhhhcCCCCCCeEEEEe----ccccccCCCCCC-eeEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVT-MAHSKLDTEVQGAIFGHPPPGMRKVVLS----TNVAETSITIDD-VAYV 98 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~-~lhs~l~~~~q~~~~~~~~~g~~kvila----Tniae~sitI~~-V~~V 98 (304)
++.+|||++++++++.+++.|.+.+ +.+. .+||. ++ + ++.|..|+.+|+|| |+++++|+|+|+ |++|
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~----~r-~-~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~V 324 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF----EK-N-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYV 324 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTT-CCEEESSSCH----HH-H-HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-CceehhhcCc----ch-H-HHHHhCCCCeEEEEecCcCchhhccCccccccCEE
Confidence 4789999999999999999998865 7787 88985 33 3 77788899999999 999999999999 9999
Q ss_pred EeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-----CccceeccCHH
Q psy11774 99 VDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-----PGESFHLYSED 150 (304)
Q Consensus 99 ID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-----~G~c~rL~t~~ 150 (304)
|+.+. +.+ .|.++|.||+||+||.+ +|.|+.++.+.
T Consensus 325 I~~~~--------p~~--------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 325 IFWGT--------PSG--------PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp EEESC--------CTT--------TCHHHHHHHHGGGCCEETTEECCEEEEEECCCH
T ss_pred EEECC--------CCC--------CCHHHHHHHhCccccCCCCCCcceEEEEEEccH
Confidence 98443 311 46788999999999975 69999998543
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.44 E-value=5.2e-14 Score=150.82 Aligned_cols=110 Identities=16% Similarity=0.263 Sum_probs=95.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
.+|.++||+|+.++++.+++.|++. ++..+..+||+|++++|.++++.|..|+.+|+|||+++|+|+|||++++||.
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi-- 888 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII-- 888 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE--
Confidence 4688999999999999999999764 4688999999999999999999999999999999999999999999999994
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHH
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSED 150 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~ 150 (304)
+++.. .+.+++.||+||+||.+ +|.||.+++.+
T Consensus 889 ------~~~~~---------~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 889 ------ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp ------TTTTS---------SCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred ------eCCCC---------CCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 33211 13457889999999976 59999998753
No 56
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.40 E-value=2.8e-13 Score=139.12 Aligned_cols=106 Identities=24% Similarity=0.186 Sum_probs=89.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC--------Cee
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID--------DVA 96 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~--------~V~ 96 (304)
+.++|||+.+.+.++.+.+.|...+ +.+..|||++.+.++..+.+.+..| .|+||||+|.||+||+ ++.
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~g-i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNKG-IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTTT-CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCc
Confidence 4579999999999999999998876 8899999998887776666666555 6999999999999999 899
Q ss_pred EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHH
Q psy11774 97 YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDR 151 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~ 151 (304)
+||++.+ |-|...+.||+||+||.+ ||.++.+++.++
T Consensus 509 ~VIn~d~------------------p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 509 AVVGTER------------------HESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp EEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred EEEEecC------------------CCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 9998443 346778889999999987 599988877543
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.39 E-value=3.1e-14 Score=146.88 Aligned_cols=108 Identities=21% Similarity=0.314 Sum_probs=88.0
Q ss_pred CCCcEEEEcCCHHH--------HHHHHHHHhc-C-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC
Q psy11774 24 FPGAILCFLPGWQD--------IIQVSRVLSA-I-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~e--------i~~~~~~L~~-~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~ 93 (304)
.++.++||+|..++ ++.+++.|.+ . +++.+..+||+|++++|.++++.|..|+.+|+|||+++|+|+|||
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP 656 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVP 656 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCT
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCC
Confidence 46779999997654 5666777766 3 457899999999999999999999999999999999999999999
Q ss_pred CeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccC
Q psy11774 94 DVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYS 148 (304)
Q Consensus 94 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t 148 (304)
++++||. ||++. .+.+++.||+||+||.+ +|.||.+++
T Consensus 657 ~v~~VIi--------~d~~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 657 RANVMVI--------ENPER---------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp TCCEEEB--------CSCSS---------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred CCCEEEE--------eCCCC---------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 9999996 54432 14567889999999965 599999997
No 58
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.36 E-value=1.8e-13 Score=145.63 Aligned_cols=74 Identities=7% Similarity=0.113 Sum_probs=60.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEe----ccccccCCCCCCe-eEEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLS----TNVAETSITIDDV-AYVV 99 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvila----Tniae~sitI~~V-~~VI 99 (304)
++.+|||++++++++.+++.|.+. +.+..+||++. ++++.|..|+.+|+|| ||++++|||||+| ++||
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~--~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK--FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS--SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc--cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 578999999999999999999876 88999999984 4555667889999999 9999999999995 9999
Q ss_pred eCCCcc
Q psy11774 100 DTGCHK 105 (304)
Q Consensus 100 D~g~~k 105 (304)
+.|.++
T Consensus 348 ~~~~P~ 353 (1054)
T 1gku_B 348 FVGCPS 353 (1054)
T ss_dssp EESCCE
T ss_pred EeCCCc
Confidence 999884
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.30 E-value=1.2e-12 Score=128.07 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=87.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEec-cccccCCCCCCeeEEEeCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLST-NVAETSITIDDVAYVVDTGC 103 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaT-niae~sitI~~V~~VID~g~ 103 (304)
...++||.+ .++++.+.+.|.+.+ ..+..+||+++.++|.++++.|.+|+.+|+||| +++++|+|+|++++||.
T Consensus 348 ~~~~ivf~~-~~~~~~l~~~L~~~~-~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~--- 422 (510)
T 2oca_A 348 ENAFVMFKH-VSHGKAIFDLIKNEY-DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL--- 422 (510)
T ss_dssp CEEEEEESS-HHHHHHHHHHHHTTC-SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE---
T ss_pred CCeEEEEec-HHHHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE---
Confidence 344666666 899999999998865 489999999999999999999999999999999 99999999999999996
Q ss_pred ccceeecCCCCcccccceecchhhhhhhccccCCCCCcc-ceeccC
Q psy11774 104 HKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGE-SFHLYS 148 (304)
Q Consensus 104 ~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G~-c~rL~t 148 (304)
|++. .|.+++.||+||+||.++|. ++.+|+
T Consensus 423 -----~~~~----------~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 423 -----AHGV----------KSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp -----SSCC----------CSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred -----eCCC----------CCHHHHHHHHhcccccCCCCceEEEEE
Confidence 4433 35678889999999988754 777765
No 60
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.28 E-value=2.1e-12 Score=130.67 Aligned_cols=106 Identities=24% Similarity=0.236 Sum_probs=85.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCC--------Cee
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITID--------DVA 96 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~--------~V~ 96 (304)
+.++|||+++.+.++.+.+.|.+.+ +.+..|||+....++..+.+.+..| .|+||||+|.||+||+ |+.
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~G-i~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~Ggl 550 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKKG-IPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGL 550 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTT-CCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCC
Confidence 5679999999999999999998875 8889999995555544444444444 6999999999999998 677
Q ss_pred EEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-CccceeccCHHH
Q psy11774 97 YVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFHLYSEDR 151 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~rL~t~~~ 151 (304)
+||++.+ |-|...+.||+||+||.+ ||.++.+.+.++
T Consensus 551 hVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 551 CIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 9998443 346677889999999987 599988877643
No 61
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.27 E-value=3.7e-13 Score=130.39 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=89.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTG 102 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g 102 (304)
..++.+|||+++.+.++.+.+.|. +..+||+++.++|.++++.|..|..+|+|||++++.|+|+|++++||.
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l~------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~-- 418 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVFL------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI-- 418 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHTT------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--
T ss_pred CCCCcEEEEECCHHHHHHHHHHhC------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--
Confidence 457789999999999999998873 456899999999999999999999999999999999999999999997
Q ss_pred CccceeecCCCCcccccceecchhhhhhhccccCCCCCc----cceeccCHH
Q psy11774 103 CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPG----ESFHLYSED 150 (304)
Q Consensus 103 ~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~G----~c~rL~t~~ 150 (304)
||++ -|...+.||+||+||.++| .+|.++++.
T Consensus 419 ------~~~~----------~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 419 ------MSGS----------GSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp ------ECCS----------SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred ------ECCC----------CCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 5433 3567889999999998877 466666654
No 62
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.27 E-value=3.4e-13 Score=143.88 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=66.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEE-EecCCCCHHHHhhhhcCCCCCCeEEEEe----ccccccCCCCCC-eeEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVT-MAHSKLDTEVQGAIFGHPPPGMRKVVLS----TNVAETSITIDD-VAYV 98 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~-~lhs~l~~~~q~~~~~~~~~g~~kvila----Tniae~sitI~~-V~~V 98 (304)
++.+|||+++++.++.+++.|...+ +.+. .+||. |.+ ++.|..|+.+|+|| ||++++|||||+ |++|
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~g-~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~V 381 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYV 381 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHTT-CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEE
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCC-CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEE
Confidence 4889999999999999999998865 7887 99982 445 88888999999999 999999999999 9999
Q ss_pred EeCCCcc
Q psy11774 99 VDTGCHK 105 (304)
Q Consensus 99 ID~g~~k 105 (304)
|+.|+++
T Consensus 382 I~~d~P~ 388 (1104)
T 4ddu_A 382 IFWGTPS 388 (1104)
T ss_dssp EEESCCE
T ss_pred EEECCCC
Confidence 9988887
No 63
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.25 E-value=6.3e-12 Score=129.03 Aligned_cols=106 Identities=23% Similarity=0.175 Sum_probs=89.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCC---------
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD--------- 94 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~--------- 94 (304)
.+.++|||+.+.+..+.+.+.|.+.+ +.+..|||+....++..+.+.+..| .|+||||+|.||+||+.
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~g-i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~ 516 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKAG-IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVA 516 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTT-CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHH
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhh
Confidence 35579999999999999999998876 8899999998877777777888777 69999999999999997
Q ss_pred -----------------------e-----eEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCC-Ccccee
Q psy11774 95 -----------------------V-----AYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK-PGESFH 145 (304)
Q Consensus 95 -----------------------V-----~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~-~G~c~r 145 (304)
| .+||++.+ |-|+..+.||+||+||.+ ||.+..
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~ 578 (853)
T 2fsf_A 517 ALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRF 578 (853)
T ss_dssp HCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred hcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEE
Confidence 4 69998443 346778889999999987 599887
Q ss_pred ccCHH
Q psy11774 146 LYSED 150 (304)
Q Consensus 146 L~t~~ 150 (304)
+.+.+
T Consensus 579 fls~e 583 (853)
T 2fsf_A 579 YLSME 583 (853)
T ss_dssp EEETT
T ss_pred Eeccc
Confidence 77654
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.22 E-value=5.8e-12 Score=132.94 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=94.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCC--eEEEEeccccccCCCCCCeeEEEe
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGM--RKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~--~kvilaTniae~sitI~~V~~VID 100 (304)
..++.+|||+++.+.++.+.+.|.+..++.+..+||++++++|.++++.|..|+ .+|+|||+++++|+++|++++||.
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~ 580 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM 580 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE
Confidence 467889999999999999999998654589999999999999999999999887 999999999999999999999996
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCC-c--cceeccCHH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP-G--ESFHLYSED 150 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~-G--~c~rL~t~~ 150 (304)
||++ -+.+.+.||.||+||.+. | ..|+++.+.
T Consensus 581 --------~d~p----------~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 581 --------FDLP----------FNPDLLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp --------SSCC----------SSHHHHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred --------ecCC----------CCHHHHHHHhhccccCCCCceEEEEEecCCC
Confidence 5544 256678899999999765 4 345555543
No 65
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.21 E-value=4.4e-12 Score=115.37 Aligned_cols=111 Identities=15% Similarity=0.068 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCC-CeE-EEEeccccccCCCCCCeeEEEeC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPG-MRK-VVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g-~~k-vilaTniae~sitI~~V~~VID~ 101 (304)
.+..+|||......++.+.+.|....++.+..+||+++.++|.++++.|..+ ..+ +++||+++.+|++++++++||.
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~- 189 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH- 189 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE-
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE-
Confidence 4568999999999999999999764237788999999999999999888766 445 7899999999999999999997
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCCC---ccceeccCHHHH
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP---GESFHLYSEDRY 152 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~---G~c~rL~t~~~~ 152 (304)
||++-+ .+.+.||.||++|.+. -.+|+++++...
T Consensus 190 -------~d~~wn----------p~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 190 -------FDRWWN----------PAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp -------CSCCSC----------TTTC--------------CCEEEEEEETTSH
T ss_pred -------ECCCCC----------hhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 665533 3455699999988654 446888877543
No 66
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.18 E-value=2.2e-11 Score=125.37 Aligned_cols=105 Identities=26% Similarity=0.196 Sum_probs=87.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCCCCCe---------
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDV--------- 95 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sitI~~V--------- 95 (304)
+.++|||+.+.+..+.+.+.|.+.+ +.+..|||+....++..+.+.+..| .|+||||+|.||+||+.+
T Consensus 460 gqpvLVft~Sie~sE~Ls~~L~~~G-i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~ 536 (922)
T 1nkt_A 460 GQPVLIGTTSVERSEYLSRQFTKRR-IPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQ 536 (922)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHTT-CCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHH
Confidence 4579999999999999999998876 8899999998777766666777776 699999999999999975
Q ss_pred -------------------------------------------eEEEeCCCccceeecCCCCcccccceecchhhhhhhc
Q psy11774 96 -------------------------------------------AYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRA 132 (304)
Q Consensus 96 -------------------------------------------~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~ 132 (304)
.+||++.+ |-|+..+.||+
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~------------------pes~riy~qr~ 598 (922)
T 1nkt_A 537 RLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTER------------------HESRRIDNQLR 598 (922)
T ss_dssp HHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSC------------------CSSHHHHHHHH
T ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccC------------------CCCHHHHHHHh
Confidence 59998443 34677888999
Q ss_pred cccCCCC-CccceeccCHH
Q psy11774 133 GRAGRTK-PGESFHLYSED 150 (304)
Q Consensus 133 GRaGR~~-~G~c~rL~t~~ 150 (304)
||+||.+ ||.+..+.+.+
T Consensus 599 GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 599 GRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HTSSGGGCCEEEEEEEETT
T ss_pred cccccCCCCeeEEEEechh
Confidence 9999987 59988777653
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.13 E-value=3.8e-11 Score=119.78 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcCC-------CcEEEEecCCCCHHHHhhhhcCCCCCCeE---EEEeccccccCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAIP-------GLLVTMAHSKLDTEVQGAIFGHPPPGMRK---VVLSTNVAETSITI 92 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~~-------~~~v~~lhs~l~~~~q~~~~~~~~~g~~k---vilaTniae~sitI 92 (304)
...+.+|||+++.+.++.+++.|.+.. .-.+..+||.++. +|.++++.|..|..+ |+++|+++++|+|+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 456889999999999999999996431 1237789998753 577788777776554 88999999999999
Q ss_pred CCeeEEEeCCCccceeecCCCCcccccceecchhhhhhhccccCCCCC
Q psy11774 93 DDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP 140 (304)
Q Consensus 93 ~~V~~VID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~ 140 (304)
|++++||. |++. -|...+.||+||+||.++
T Consensus 516 p~v~~Vi~--------~~~~----------~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 516 PTCKNVVL--------ARVV----------NSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTEEEEEE--------ESCC----------CCHHHHHHHHTTSCCCBG
T ss_pred hheeEEEE--------EecC----------CChHHHHHHHhhhcccCc
Confidence 99999996 5443 356788999999999876
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.02 E-value=9.7e-11 Score=114.13 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=86.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCC-Ce-EEEEeccccccCCCCCCeeEEEeC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPG-MR-KVVLSTNVAETSITIDDVAYVVDT 101 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g-~~-kvilaTniae~sitI~~V~~VID~ 101 (304)
.+..+|||......++.+.+.|....++.+..+||+++.++|.++++.|..+ .. .+++||++++.|++++++++||.
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~- 418 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH- 418 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE-
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE-
Confidence 4568999999999999999999764236788899999999999999888766 33 47999999999999999999996
Q ss_pred CCccceeecCCCCcccccceecchhhhhhhccccCCCCC---ccceeccCHHHH
Q psy11774 102 GCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP---GESFHLYSEDRY 152 (304)
Q Consensus 102 g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~---G~c~rL~t~~~~ 152 (304)
||++- +.+.+.||.||++|.+. ..+|+|+++...
T Consensus 419 -------~d~~~----------~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 419 -------FDRWW----------NPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp -------SSCCS----------CC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred -------eCCCC----------CcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 55443 34556799999999664 456888876543
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.89 E-value=1.6e-09 Score=109.52 Aligned_cols=110 Identities=11% Similarity=0.060 Sum_probs=91.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCe---EEEEeccccccCCCCCCeeEEEe
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMR---KVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~---kvilaTniae~sitI~~V~~VID 100 (304)
.+..+|||......++.+.+.|...+ +.+..+||+++.++|.++++.|..+.. .+++||.+++.|++++++++||.
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~ 493 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRR-YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM 493 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHT-CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCC-CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE
Confidence 45689999999999999999987754 789999999999999999888776643 58999999999999999999996
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCCC---ccceeccCHHHH
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKP---GESFHLYSEDRY 152 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~~---G~c~rL~t~~~~ 152 (304)
||++ -+.+.+.||.||++|.+. ..+|+++++...
T Consensus 494 --------~d~~----------wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 494 --------FDPD----------WNPANDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp --------CSCC----------SSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred --------ECCC----------CCccHHHHHHHhhhhcCCCCceEEEEEEECCCH
Confidence 6644 356677899999988654 568888877543
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.81 E-value=4.5e-09 Score=108.78 Aligned_cols=111 Identities=17% Similarity=0.058 Sum_probs=92.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCC---eEEEEeccccccCCCCCCeeEEEe
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGM---RKVVLSTNVAETSITIDDVAYVVD 100 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~---~kvilaTniae~sitI~~V~~VID 100 (304)
.+..+|||......++.+.+.|...+ +.+..+||+++.++|.++++.|..+. ..+++||.+++.||+++.+++||.
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g-~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~ 649 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKG-INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI 649 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHT-CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE
Confidence 45689999999999999999997654 78899999999999999999987643 359999999999999999999996
Q ss_pred CCCccceeecCCCCcccccceecchhhhhhhccccCCCC---CccceeccCHHHHh
Q psy11774 101 TGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK---PGESFHLYSEDRYR 153 (304)
Q Consensus 101 ~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRaGR~~---~G~c~rL~t~~~~~ 153 (304)
||+.- +.+...||.||++|.+ +..+|+|+++...+
T Consensus 650 --------~D~~w----------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 650 --------FDSDW----------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp --------SSCCS----------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred --------ecCCC----------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 66542 4566779999988844 57789999886554
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.19 E-value=1.4e-06 Score=92.47 Aligned_cols=98 Identities=7% Similarity=0.013 Sum_probs=72.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-----------CCcEE-EEecCC----------C----------CHH---------
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-----------PGLLV-TMAHSK----------L----------DTE--------- 63 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-----------~~~~v-~~lhs~----------l----------~~~--------- 63 (304)
++..+||+++++.+..+.+.|.+. ..+.+ +.+|+. + ++.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 467999999999999999888542 12455 445542 2 211
Q ss_pred --------------------HHhhhhcCCCCCCeEEEEeccccccCCCCCCeeEEEeCCCccceeecCCCCcccccceec
Q psy11774 64 --------------------VQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWI 123 (304)
Q Consensus 64 --------------------~q~~~~~~~~~g~~kvilaTniae~sitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~i 123 (304)
+|..+.+.|+.|..+|+|+||++.+|+|+|.+.+++ +|.+ .
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly---------lDkp----------l 677 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF---------VDKN----------L 677 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE---------EESC----------C
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE---------EccC----------C
Confidence 255666777889999999999999999999995443 4433 3
Q ss_pred chhhhhhhccccCCCCCc
Q psy11774 124 SRASVNQRAGRAGRTKPG 141 (304)
Q Consensus 124 sk~~~~QR~GRaGR~~~G 141 (304)
+...+.||.||+||..+|
T Consensus 678 ~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 678 RYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp CHHHHHHHHHTTCCCCCT
T ss_pred CccceeehhhccCcCCCC
Confidence 456788999999998763
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.05 E-value=0.00014 Score=71.69 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=62.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEE--eccccccCCCCCC----eeE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVL--STNVAETSITIDD----VAY 97 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvil--aTniae~sitI~~----V~~ 97 (304)
.+|.+|||+||...++.+.+.|...+ +..++.. .++.++++.|..+ ..|++ +|+.+..|||+|| ++.
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~~~----~~~q~~~--~~~~~~l~~f~~~-~~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSGIP----VIEENKK--TRHEEVLELMKTG-KYLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTTSC----EEESTTT--CCHHHHHHHHHTS-CCEEEEEC---------------CEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhccCc----eEecCCC--CcHHHHHHHHhcC-CeEEEEEecCceecceecCCCcccccE
Confidence 57899999999999999998886532 2335543 2344444444443 35777 8999999999998 899
Q ss_pred EEeCCCccceeecCCC-------------CcccccceecchhhhhhhccccCCCCC--ccceec
Q psy11774 98 VVDTGCHKETRYNSKD-------------DLVSLDNQWISRASVNQRAGRAGRTKP--GESFHL 146 (304)
Q Consensus 98 VID~g~~k~~~yd~~~-------------~~~~l~~~~isk~~~~QR~GRaGR~~~--G~c~rL 146 (304)
||..|++-...-|+.. +...+. .+..--...|-.||+-|+.. |..+-+
T Consensus 456 Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 456 LVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp EEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 9999987433322211 000000 11113567799999999754 665433
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.66 E-value=0.013 Score=60.91 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHh
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLS 46 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~ 46 (304)
.+.+|||+..+.++-+.+.+.|.
T Consensus 442 ~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 442 RGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp HTCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHh
Confidence 35679999999999999998887
No 74
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=88.74 E-value=1.5 Score=40.40 Aligned_cols=110 Identities=6% Similarity=-0.063 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccCCC-----CCCeeEE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSIT-----IDDVAYV 98 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~sit-----I~~V~~V 98 (304)
.+..||||....+..+.+.+.+...+ +....+-|+....+++ . ......|.+.|.-+.-|++ .-..+.|
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~~~-~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~~gin~~~~nl~~aD~V 197 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLGNK-VHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGINFTKYPIKSKARFDML 197 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTTSS-CEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEE
T ss_pred CCCEEEEEECChhHHHHHHHHHhcCC-CceEeCCCCchhhhhh-c----ccCCceEEEEECCCCCCcCcccccCCCCCEE
Confidence 35679999999999988888887654 8899998885443322 1 2345667777764444454 4566777
Q ss_pred EeCCCccceeecCCCCcccccceecchhhhhhhcccc--CCCCCccceeccCHHHHh
Q psy11774 99 VDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRA--GRTKPGESFHLYSEDRYR 153 (304)
Q Consensus 99 ID~g~~k~~~yd~~~~~~~l~~~~isk~~~~QR~GRa--GR~~~G~c~rL~t~~~~~ 153 (304)
| .||+.-+...- --++..|+-|. |..++-..|||.+....+
T Consensus 198 I--------~~DsdwNp~~d------~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 198 I--------CLDTTVDTSQK------DIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp E--------ECSTTCCTTSH------HHHHHHCCC---------CCEEEEEETTSHH
T ss_pred E--------EECCCCCCCCh------HHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 7 36655442211 01234466666 345567899998876544
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=88.46 E-value=1.1 Score=43.87 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEec--cccccCCCCC-----Cee
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLST--NVAETSITID-----DVA 96 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaT--niae~sitI~-----~V~ 96 (304)
.+|.+|||+|+.+.++.+.+. .+..++.=..+++.++..+.|+. . ..-|+++| .-.--|||+| ..+
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~----~~~~v~~q~~~~~~~~~~~~~~~--~-~~~vl~~v~gg~~~EGiD~~d~~g~~l~ 464 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR----ISLPKYVESEDSSVEDLYSAISA--N-NKVLIGSVGKGKLAEGIELRNNDRSLIS 464 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT----CCSSEEECCSSCCHHHHHHHTTS--S-SSCEEEEESSCCSCCSSCCEETTEESEE
T ss_pred CCCCEEEEecCHHHHHHHHHh----cCCcEEEcCCCCCHHHHHHHHHh--c-CCeEEEEEecceecccccccccCCccee
Confidence 478999999999999988862 22334333335566666666652 2 24799998 6788899999 377
Q ss_pred EEEeCCCccceeecCCC-----------Ccccc---cceecchhhhhhhccccCCCCC--ccceec
Q psy11774 97 YVVDTGCHKETRYNSKD-----------DLVSL---DNQWISRASVNQRAGRAGRTKP--GESFHL 146 (304)
Q Consensus 97 ~VID~g~~k~~~yd~~~-----------~~~~l---~~~~isk~~~~QR~GRaGR~~~--G~c~rL 146 (304)
.||=.|++-... ||.. |-+.+ ...| .--...|=.||+=|+.. |..+-+
T Consensus 465 ~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 465 DVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp EEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred EEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 888778764433 3321 11111 1222 34456788899988764 765544
No 76
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.36 E-value=1.2 Score=37.21 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=52.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC----CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-----c-ccCCCCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI----PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-----A-ETSITIDD 94 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~----~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-----a-e~sitI~~ 94 (304)
...+||.+|+++-++++.+.+++. +++.+..+||+.+..++.+.+.. +...|+|+|.- . ...+.+.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 448999999999998888777543 36889999999988777665542 23479999951 1 23456778
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+++||
T Consensus 159 ~~~lV 163 (220)
T 1t6n_A 159 IKHFI 163 (220)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 88766
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.26 E-value=1.2 Score=37.82 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=54.7
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC----CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-----c-c
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAI----PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-----A-E 87 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~----~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-----a-e 87 (304)
++......+.+||.+|+++-++++.+.+++. +++.+..++|+.+..++...++ ...|+|+|.- . .
T Consensus 85 ~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~ 159 (230)
T 2oxc_A 85 SLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIEL 159 (230)
T ss_dssp HCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHT
T ss_pred HHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhc
Confidence 3333445678999999999999988887643 3588999999998887766654 2479999972 1 2
Q ss_pred cCCCCCCeeEEE
Q psy11774 88 TSITIDDVAYVV 99 (304)
Q Consensus 88 ~sitI~~V~~VI 99 (304)
..+...++++||
T Consensus 160 ~~~~~~~~~~lV 171 (230)
T 2oxc_A 160 DYLNPGSIRLFI 171 (230)
T ss_dssp TSSCGGGCCEEE
T ss_pred CCcccccCCEEE
Confidence 345566776555
No 78
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.59 E-value=2 Score=35.36 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcC----CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAI----PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSIT 91 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~----~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sit 91 (304)
......+||.+|+++-++++.+.+.+. +++.+..++|+.+..++...+. +...|+++|+ +....+.
T Consensus 68 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~ 143 (206)
T 1vec_A 68 KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAK 143 (206)
T ss_dssp TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSC
T ss_pred cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcC
Confidence 344567999999999988888777542 3578999999988776655443 2347999996 1223345
Q ss_pred CCCeeEEE
Q psy11774 92 IDDVAYVV 99 (304)
Q Consensus 92 I~~V~~VI 99 (304)
..++++||
T Consensus 144 ~~~~~~lV 151 (206)
T 1vec_A 144 VDHVQMIV 151 (206)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 66777666
No 79
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=86.89 E-value=0.32 Score=48.62 Aligned_cols=76 Identities=8% Similarity=0.120 Sum_probs=49.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEec--cccccCCCCCC--eeEEE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLST--NVAETSITIDD--VAYVV 99 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaT--niae~sitI~~--V~~VI 99 (304)
.+|.+|||+||...++.+.+.|+.. ... ...+++..++.++++.|. +..-|+++| ....-|||++| .+.||
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~~-~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~vi 521 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSFE-HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMII 521 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCSC-CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhc-chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEE
Confidence 3788999999999999998887621 122 445555556667777666 777899997 48888999986 55777
Q ss_pred eCCCc
Q psy11774 100 DTGCH 104 (304)
Q Consensus 100 D~g~~ 104 (304)
=.|++
T Consensus 522 I~~lP 526 (620)
T 4a15_A 522 LAGLP 526 (620)
T ss_dssp ESSCC
T ss_pred EEcCC
Confidence 77776
No 80
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.40 E-value=1.8 Score=37.01 Aligned_cols=72 Identities=17% Similarity=0.062 Sum_probs=52.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccc-cCCCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAE-TSITIDD 94 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae-~sitI~~ 94 (304)
..+.+||.+|+++-+.++.+.+++. .++.+..++|+.+..++...+.. ...|+|+|+ ... ..+.+.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 4567999999999998887776542 34789999999998887666643 246999995 332 3456778
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+++||
T Consensus 177 ~~~lV 181 (242)
T 3fe2_A 177 TTYLV 181 (242)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 88766
No 81
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=85.29 E-value=0.64 Score=47.77 Aligned_cols=75 Identities=15% Similarity=0.090 Sum_probs=59.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-cccCCCCCCeeEEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-AETSITIDDVAYVV 99 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-ae~sitI~~V~~VI 99 (304)
++.+||.+|++.-+.+..+.+.+. .++.+..+||+++..++...++....|...|+|+|.- ....+.+.++.+||
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 467999999999888887777542 2488999999999999887777666777899999963 33456788888776
No 82
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=85.14 E-value=2.6 Score=35.20 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=46.2
Q ss_pred cCCCCCCCcEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc------cccC
Q psy11774 19 FPCPSFPGAILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV------AETS 89 (304)
Q Consensus 19 i~~~~~~g~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni------ae~s 89 (304)
+......+.+||.+|+++-+.++.+.+.. ..++.+..++|+.+..++...+.. ..|+++|.- ....
T Consensus 76 l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~iiv~Tp~~l~~~~~~~~ 150 (224)
T 1qde_A 76 IDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-----AQIVVGTPGRVFDNIQRRR 150 (224)
T ss_dssp CCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-----CSEEEECHHHHHHHHHTTS
T ss_pred HhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-----CCEEEECHHHHHHHHHhCC
Confidence 33334556899999999999888887754 235788999999877666554432 479999952 2335
Q ss_pred CCCCCeeEEE
Q psy11774 90 ITIDDVAYVV 99 (304)
Q Consensus 90 itI~~V~~VI 99 (304)
+...++++||
T Consensus 151 ~~~~~~~~iV 160 (224)
T 1qde_A 151 FRTDKIKMFI 160 (224)
T ss_dssp SCCTTCCEEE
T ss_pred cchhhCcEEE
Confidence 5667777666
No 83
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=84.38 E-value=1.6 Score=36.83 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=47.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------ccccCCCCCCe
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAETSITIDDV 95 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~sitI~~V 95 (304)
....+||.+|+++-+.++.+.+++. .++.+..++|+.+..++...+.. ...|+|+|+ +....+.+.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999988888653 45788999999887766555532 246999995 22335567788
Q ss_pred eEEE
Q psy11774 96 AYVV 99 (304)
Q Consensus 96 ~~VI 99 (304)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 8766
No 84
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=84.34 E-value=0.52 Score=43.74 Aligned_cols=77 Identities=8% Similarity=-0.022 Sum_probs=54.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccc----cCCCCCCee
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAE----TSITIDDVA 96 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae----~sitI~~V~ 96 (304)
..++.+||.+|+++-+.+..+.+++. .++.+..+||+.+..++...++....+...|+|+|+-.= ..+...+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 34678999999999999998888763 357899999999986654444443445568999996321 014455777
Q ss_pred EEE
Q psy11774 97 YVV 99 (304)
Q Consensus 97 ~VI 99 (304)
+||
T Consensus 142 ~iV 144 (414)
T 3oiy_A 142 FVF 144 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 85
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=83.75 E-value=2.1 Score=35.23 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=51.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC-CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----cc-ccCCCCCCee
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI-PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VA-ETSITIDDVA 96 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~-~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----ia-e~sitI~~V~ 96 (304)
..+.+||.+|+++-+.++.+.+.+. +.+.+..+||+.+...+...+.. ...|+++|+ .. ...+...+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4567999999999999998888754 34788899999877665544432 246999995 22 2345677777
Q ss_pred EEE
Q psy11774 97 YVV 99 (304)
Q Consensus 97 ~VI 99 (304)
+||
T Consensus 147 ~iV 149 (207)
T 2gxq_A 147 VAV 149 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 86
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.22 E-value=2.6 Score=35.94 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=44.8
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----cccc-CCCC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAET-SITI 92 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~-sitI 92 (304)
......+||.+|+++-+.++.+.+++. .++.+..++|+.....+...+ ..+...|+|+|+ .... .+..
T Consensus 95 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 171 (237)
T 3bor_A 95 EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKL---QAEAPHIVVGTPGRVFDMLNRRYLSP 171 (237)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCS
T ss_pred cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHH---hcCCCCEEEECHHHHHHHHHhCCcCc
Confidence 334568999999999999988887643 246788889987665544333 234457999993 3333 3566
Q ss_pred CCeeEEE
Q psy11774 93 DDVAYVV 99 (304)
Q Consensus 93 ~~V~~VI 99 (304)
.++++||
T Consensus 172 ~~~~~lV 178 (237)
T 3bor_A 172 KWIKMFV 178 (237)
T ss_dssp TTCCEEE
T ss_pred ccCcEEE
Confidence 7777666
No 87
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=80.43 E-value=2.1 Score=35.84 Aligned_cols=74 Identities=9% Similarity=0.016 Sum_probs=49.5
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcC---C----CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----cccc-
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAI---P----GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAET- 88 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~---~----~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~- 88 (304)
......+||.+|+++-++++.+.+++. . .+.+..++|+.+..++.+.+. ....|+|+|. ....
T Consensus 69 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~ 144 (219)
T 1q0u_A 69 ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN----VQPHIVIGTPGRINDFIREQ 144 (219)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCS----SCCSEEEECHHHHHHHHHTT
T ss_pred CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcC----CCCCEEEeCHHHHHHHHHcC
Confidence 334567999999999998888776542 1 478888999987665544332 2347999994 2232
Q ss_pred CCCCCCeeEEE
Q psy11774 89 SITIDDVAYVV 99 (304)
Q Consensus 89 sitI~~V~~VI 99 (304)
.+...++++||
T Consensus 145 ~~~~~~~~~lV 155 (219)
T 1q0u_A 145 ALDVHTAHILV 155 (219)
T ss_dssp CCCGGGCCEEE
T ss_pred CCCcCcceEEE
Confidence 34456667655
No 88
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=79.77 E-value=1.5 Score=46.95 Aligned_cols=75 Identities=11% Similarity=0.134 Sum_probs=59.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-ccccCCCCCCeeEEE
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-VAETSITIDDVAYVV 99 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-iae~sitI~~V~~VI 99 (304)
+..+||.+|+..-+.+..+.+.+. .++.+..+++..+..++...++....|...|+|+|. .....+.+.++.+||
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 458999999999998888877642 237889999999998888777766677788999994 455567888998777
No 89
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=77.22 E-value=4.2 Score=34.27 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=49.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-----ccc--CCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-----AET--SITID 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-----ae~--sitI~ 93 (304)
.+..+||.+|+++-+.+..+.+++. .++.+..+||+.+...+...+. ...|+|+|.- ... .+...
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN-----NINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHT-----TCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCC-----CCCEEEECHHHHHHHHHhcCCcccc
Confidence 3557999999999999988887653 2478899999988776665553 2479999951 222 35667
Q ss_pred CeeEEE
Q psy11774 94 DVAYVV 99 (304)
Q Consensus 94 ~V~~VI 99 (304)
++++||
T Consensus 171 ~~~~lV 176 (236)
T 2pl3_A 171 DLQMLV 176 (236)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 787666
No 90
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=76.86 E-value=5.5 Score=35.92 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=53.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC----CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-----c-ccCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI----PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-----A-ETSITI 92 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~----~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-----a-e~sitI 92 (304)
...+.+||.+|+++-++++.+.+++. +++.+..++|+.+..++...+.. +...|+++|.= . ...+..
T Consensus 74 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~iiv~T~~~l~~~~~~~~~~~ 150 (391)
T 1xti_A 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNL 150 (391)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCC
T ss_pred CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---CCCCEEEECHHHHHHHHHcCCccc
Confidence 34568999999999998887777543 36889999999988777665542 23479999952 1 223556
Q ss_pred CCeeEEE
Q psy11774 93 DDVAYVV 99 (304)
Q Consensus 93 ~~V~~VI 99 (304)
.++++||
T Consensus 151 ~~~~~vV 157 (391)
T 1xti_A 151 KHIKHFI 157 (391)
T ss_dssp TTCSEEE
T ss_pred cccCEEE
Confidence 7777666
No 91
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=76.66 E-value=4.1 Score=35.10 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=52.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccc--cCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAE--TSITI 92 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae--~sitI 92 (304)
.....+||.+|+++-+.++.+.+++. .++.+..++|+.+..++...+.. ...|+|+|+ ... ..+.+
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK----KPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT----CCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCcCc
Confidence 34567999999999988888777543 24788999999987776555532 347999994 222 34667
Q ss_pred CCeeEEE
Q psy11774 93 DDVAYVV 99 (304)
Q Consensus 93 ~~V~~VI 99 (304)
.++++||
T Consensus 185 ~~~~~lV 191 (249)
T 3ber_A 185 RALKYLV 191 (249)
T ss_dssp TTCCEEE
T ss_pred cccCEEE
Confidence 7887666
No 92
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=76.27 E-value=6.2 Score=33.65 Aligned_cols=71 Identities=17% Similarity=0.102 Sum_probs=50.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc------cccCCCCCCe
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV------AETSITIDDV 95 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni------ae~sitI~~V 95 (304)
...+||.+|+++-+.++.+.+++. .++.+..++|+.+..++...+.. ...|+|+|.- ....+.+.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM----GCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS----CCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCC----CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 357999999999999888777542 34778889999887776655532 2469999962 2233567777
Q ss_pred eEEE
Q psy11774 96 AYVV 99 (304)
Q Consensus 96 ~~VI 99 (304)
++||
T Consensus 176 ~~lV 179 (253)
T 1wrb_A 176 KYIV 179 (253)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7666
No 93
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=74.77 E-value=2.4 Score=45.27 Aligned_cols=76 Identities=9% Similarity=0.009 Sum_probs=54.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-----cccCCCCCCe
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-----AETSITIDDV 95 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-----ae~sitI~~V 95 (304)
..++.+||.+|+++-+.++.+.+++. .++.+..+||+.+..++...++....|...|+|+|+= .+. +...++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 34677999999999999999999873 3478999999999855544444444555689999952 111 334567
Q ss_pred eEEE
Q psy11774 96 AYVV 99 (304)
Q Consensus 96 ~~VI 99 (304)
++||
T Consensus 198 ~~lV 201 (1104)
T 4ddu_A 198 DFVF 201 (1104)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7655
No 94
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=74.60 E-value=2.5 Score=41.83 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=49.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCC--CCCCeEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHP--PPGMRKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~--~~g~~kvilaTn 84 (304)
+|.+||.+|+++-++...+.|.+.+ +.+..++|+++..++..++... ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG-ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT-CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC-CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5789999999999999998888764 8899999999998887766433 345678999998
No 95
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=71.56 E-value=2.7 Score=40.77 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=49.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
+|.+||.+|+++-+....+.|+..+ +.+..+||+.+.+++..++.....+..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG-VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4789999999999999999998765 7889999999988887766655556678999885
No 96
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=71.13 E-value=12 Score=33.63 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=52.7
Q ss_pred cCCCCCCCcEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc------cccC
Q psy11774 19 FPCPSFPGAILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV------AETS 89 (304)
Q Consensus 19 i~~~~~~g~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni------ae~s 89 (304)
+......+.+||.+|+++-+.++.+.+.+ ..++.+..++|+.+..++...+. ...|+++|.- ....
T Consensus 83 l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~ 157 (394)
T 1fuu_A 83 IDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRR 157 (394)
T ss_dssp CCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTS
T ss_pred hhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCC
Confidence 33334566899999999999888887754 23578999999998877665554 2469999842 1234
Q ss_pred CCCCCeeEEE
Q psy11774 90 ITIDDVAYVV 99 (304)
Q Consensus 90 itI~~V~~VI 99 (304)
+...++++||
T Consensus 158 ~~~~~~~~vI 167 (394)
T 1fuu_A 158 FRTDKIKMFI 167 (394)
T ss_dssp SCCTTCCEEE
T ss_pred cchhhCcEEE
Confidence 4566777665
No 97
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.95 E-value=9.6 Score=32.94 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=51.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc------cccc-CCCCC
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN------VAET-SITID 93 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn------iae~-sitI~ 93 (304)
.++.+||.+|+++-+++..+.+++. ....+..++|+.....+...+.. ...|+|+|+ +... ++.+.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC----CCCEEEEcHHHHHHHHHccCCcccc
Confidence 3567999999999999988887652 34678889999887776655532 147999994 3222 36777
Q ss_pred CeeEEE
Q psy11774 94 DVAYVV 99 (304)
Q Consensus 94 ~V~~VI 99 (304)
++++||
T Consensus 201 ~l~~lV 206 (262)
T 3ly5_A 201 NLQCLV 206 (262)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 888766
No 98
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=69.94 E-value=11 Score=34.27 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=51.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----cccc-CCCCCCee
Q psy11774 26 GAILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAET-SITIDDVA 96 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~-sitI~~V~ 96 (304)
..+||.+|+++-+.++.+.+++ ..++.+..+||+.+..++...+.. ...|+|+|. ..+. .+.+.+++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 5699999999999988887754 235789999999988877665543 247999996 2222 34567777
Q ss_pred EEE
Q psy11774 97 YVV 99 (304)
Q Consensus 97 ~VI 99 (304)
+||
T Consensus 178 ~iV 180 (417)
T 2i4i_A 178 YLV 180 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 99
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=69.76 E-value=8.1 Score=36.11 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccc-cCCCCCCe
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAE-TSITIDDV 95 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae-~sitI~~V 95 (304)
...+||.+|+++-+.++.+.+++. ..+.+..+||+.+..++...+.. ...|+|+|+ ..+ ..+.+.++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCcccccC
Confidence 457999999999999988877642 34778889999998887766643 247999995 222 23567788
Q ss_pred eEEE
Q psy11774 96 AYVV 99 (304)
Q Consensus 96 ~~VI 99 (304)
++||
T Consensus 205 ~~lV 208 (434)
T 2db3_A 205 RFVV 208 (434)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 8776
No 100
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=69.45 E-value=11 Score=32.97 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=50.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc------cccCCCCCCe
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV------AETSITIDDV 95 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni------ae~sitI~~V 95 (304)
.+.+||.+|+++-+++..+.+.+ ..+..+..+||+.+..++...+.. ..|+++|.- ....+...++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-----ADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-----CSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-----CCEEEECHHHHHHHHHcCCcchhhC
Confidence 56799999999999998888874 234788999999988877665543 469999852 1223445666
Q ss_pred eEEE
Q psy11774 96 AYVV 99 (304)
Q Consensus 96 ~~VI 99 (304)
++||
T Consensus 131 ~~iV 134 (337)
T 2z0m_A 131 EIVI 134 (337)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 6555
No 101
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=69.22 E-value=15 Score=33.26 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=51.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccc-cCCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAE-TSITID 93 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae-~sitI~ 93 (304)
..++.+||.+|+++-+++..+.+++. .++.+..++|+....++...+. +...|+++|. ... ....+.
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~T~~~l~~~~~~~~~~~~ 162 (400)
T 1s2m_A 87 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLN----ETVHILVGTPGRVLDLASRKVADLS 162 (400)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred cCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhc----CCCCEEEEchHHHHHHHHhCCcccc
Confidence 34568999999999998888877643 2478888999988766544332 2357999994 233 345677
Q ss_pred CeeEEE
Q psy11774 94 DVAYVV 99 (304)
Q Consensus 94 ~V~~VI 99 (304)
++++||
T Consensus 163 ~~~~vI 168 (400)
T 1s2m_A 163 DCSLFI 168 (400)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 787766
No 102
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=68.15 E-value=7.2 Score=35.74 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=52.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc------cccCCCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV------AETSITID 93 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni------ae~sitI~ 93 (304)
...+.+||.+|+..-+++..+.+.+. +...+..+||+....++...+.. ..|+|+|.= ....+...
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-----AKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-----CSEEEECHHHHHHHHHTTSCCTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-----CCEEEecHHHHHHHHhcCCcchh
Confidence 34678999999999999988888764 33489999999988877665542 368898841 12245567
Q ss_pred CeeEEE
Q psy11774 94 DVAYVV 99 (304)
Q Consensus 94 ~V~~VI 99 (304)
++++||
T Consensus 125 ~~~~vI 130 (494)
T 1wp9_A 125 DVSLIV 130 (494)
T ss_dssp SCSEEE
T ss_pred hceEEE
Confidence 777666
No 103
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=67.61 E-value=13 Score=33.78 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=52.7
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----cccc-CCCC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAET-SITI 92 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~-sitI 92 (304)
....+.+||.+|+++-+.++.+.+... .++.+..++|+....++...+.. ...|+++|. .... .+..
T Consensus 102 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~~ 177 (410)
T 2j0s_A 102 QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRT 177 (410)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCC
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCccH
Confidence 345678999999999999888877542 34788889999988777655542 236999994 3333 4556
Q ss_pred CCeeEEE
Q psy11774 93 DDVAYVV 99 (304)
Q Consensus 93 ~~V~~VI 99 (304)
.++++||
T Consensus 178 ~~~~~vV 184 (410)
T 2j0s_A 178 RAIKMLV 184 (410)
T ss_dssp TTCCEEE
T ss_pred hheeEEE
Confidence 6777665
No 104
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=62.41 E-value=19 Score=31.70 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=51.6
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc------cccCCCC
Q psy11774 22 PSFPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV------AETSITI 92 (304)
Q Consensus 22 ~~~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni------ae~sitI 92 (304)
......+||.+|+++-++++.+.+.+. ..+.+..++|+....++...+.. .+|+++|.- ....+.+
T Consensus 71 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~iiv~T~~~l~~~~~~~~~~~ 145 (367)
T 1hv8_A 71 ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN-----ANIVVGTPGRILDHINRGTLNL 145 (367)
T ss_dssp SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHT-----CSEEEECHHHHHHHHHTTCSCT
T ss_pred ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCC-----CCEEEecHHHHHHHHHcCCccc
Confidence 345668999999999988888887642 34788999999887776655542 469999852 1223456
Q ss_pred CCeeEEE
Q psy11774 93 DDVAYVV 99 (304)
Q Consensus 93 ~~V~~VI 99 (304)
.++++||
T Consensus 146 ~~~~~iI 152 (367)
T 1hv8_A 146 KNVKYFI 152 (367)
T ss_dssp TSCCEEE
T ss_pred ccCCEEE
Confidence 6777666
No 105
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=61.45 E-value=22 Score=32.10 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=53.3
Q ss_pred cCCCCCCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccc-cC
Q psy11774 19 FPCPSFPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAE-TS 89 (304)
Q Consensus 19 i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae-~s 89 (304)
+......+.+||.+|+++-+.++.+.++.. .+..+..++|+.....+...+.. +...|+++|. ... ..
T Consensus 102 ~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iiv~T~~~l~~~l~~~~ 178 (414)
T 3eiq_A 102 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM---EAPHIIVGTPGRVFDMLNRRY 178 (414)
T ss_dssp CCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTT---TCCSEEEECHHHHHHHHHHTS
T ss_pred HhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhc---CCCCEEEECHHHHHHHHHcCC
Confidence 333345678999999999998888877643 34678888898877766555432 3457999994 222 23
Q ss_pred CCCCCeeEEE
Q psy11774 90 ITIDDVAYVV 99 (304)
Q Consensus 90 itI~~V~~VI 99 (304)
+...++++||
T Consensus 179 ~~~~~~~~vV 188 (414)
T 3eiq_A 179 LSPKYIKMFV 188 (414)
T ss_dssp SCSTTCCEEE
T ss_pred cccccCcEEE
Confidence 4566777665
No 106
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=60.18 E-value=13 Score=31.26 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=46.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----cccc---CCCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAET---SITID 93 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~---sitI~ 93 (304)
...+||.+|+++-+.++.+.+++. .++.+..++|+..... .+.....+...|+|+|+ .... .+.+.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 446999999999999988887653 2466777776533222 22222334568999993 2222 46777
Q ss_pred CeeEEE
Q psy11774 94 DVAYVV 99 (304)
Q Consensus 94 ~V~~VI 99 (304)
++++||
T Consensus 175 ~~~~lV 180 (245)
T 3dkp_A 175 SVEWLV 180 (245)
T ss_dssp TCCEEE
T ss_pred cCcEEE
Confidence 888766
No 107
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.30 E-value=12 Score=33.23 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=48.9
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC----CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecccc------c
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAI----PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVA------E 87 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~----~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTnia------e 87 (304)
++........+||.+|+++-+.++.+.++.. +.+.+..++++.....+. .....|+|+|+-. .
T Consensus 155 ~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~ 227 (300)
T 3fmo_B 155 QVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSK 227 (300)
T ss_dssp HCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTT
T ss_pred hhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHh
Confidence 3333344447999999999998887776542 357788888876543222 2234799999632 1
Q ss_pred -cCCCCCCeeEEE
Q psy11774 88 -TSITIDDVAYVV 99 (304)
Q Consensus 88 -~sitI~~V~~VI 99 (304)
..+++.++++||
T Consensus 228 ~~~~~l~~l~~lV 240 (300)
T 3fmo_B 228 LKFIDPKKIKVFV 240 (300)
T ss_dssp TCCCCGGGCSEEE
T ss_pred cCCCChhhceEEE
Confidence 346677888766
No 108
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=43.75 E-value=21 Score=37.70 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=44.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC---CCc----EEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI---PGL----LVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~---~~~----~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
.++.+||.+|+++-+.++.+.++.. .++ .+..+||+.+..++.+..+.... ..|+|+|+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcH
Confidence 3567999999999999888877642 235 78999999998886554443333 57888885
No 109
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=42.53 E-value=12 Score=35.35 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=48.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-----cccC-C-CCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-----AETS-I-TIDD 94 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-----ae~s-i-tI~~ 94 (304)
.+.+||.+|+++-+.+..+.+.+. .++.+..+||+.+...+...+.. ...|+|+|.= .+.+ + .+.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888887777543 25889999999876655333321 2468998842 2222 3 4566
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77665
No 110
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=38.30 E-value=20 Score=35.34 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=48.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccccC-C-CCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAETS-I-TIDD 94 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~s-i-tI~~ 94 (304)
++.+||.+|++.-+.+..+.+++. .++.+..+||+.+...+...+.. ..+|+++|+ ..+.+ + .+.+
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~L~~~l~~~~~~~l~~ 136 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NNDIIILTPQILVNNLKKGTIPSLSI 136 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH----TCSEEEECHHHHHHHHHTTSSCCGGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 378999999998888888777653 25889999999866544333321 247999985 22332 3 4666
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+++||
T Consensus 137 ~~~vV 141 (696)
T 2ykg_A 137 FTLMI 141 (696)
T ss_dssp CSEEE
T ss_pred ccEEE
Confidence 77665
No 111
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=37.16 E-value=19 Score=33.93 Aligned_cols=71 Identities=10% Similarity=0.038 Sum_probs=45.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-----cccC-C-CCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-----AETS-I-TIDD 94 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-----ae~s-i-tI~~ 94 (304)
.+.+||.+|+++-+.+..+.++.. .++.+..+||+.+..++...+.. ...|+|+|.= ...+ + .+.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888888777643 25889999999876655433321 2368999852 2222 3 5677
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+++||
T Consensus 131 ~~~vV 135 (556)
T 4a2p_A 131 FTLMI 135 (556)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77665
No 112
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=37.04 E-value=20 Score=36.30 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=45.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-----ccc-CC-CCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-----AET-SI-TIDD 94 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-----ae~-si-tI~~ 94 (304)
++.+||.+|+.+-+.+..+.+++. .++.+..+||+.+...+...+.. ...|+|+|.= ... .+ .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH----TCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC----CCCEEEEchHHHHHHHHhcccccccc
Confidence 778999999999988887777543 25889999999877665433321 2469999842 222 23 4566
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77666
No 113
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=36.69 E-value=15 Score=24.15 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCcccCCCccc
Q psy11774 201 ASITSAATELKLMGVFDQEENLTP 224 (304)
Q Consensus 201 ~~l~~al~~L~~lgald~~~~lT~ 224 (304)
..|..|++.+..+|.=|+.|.||.
T Consensus 8 ~rl~~al~qMl~MGF~negGWLt~ 31 (52)
T 1q02_A 8 PRLIESLSQMLSMGFSDEGGWLTR 31 (52)
T ss_dssp HHHHHHHHHHHTTTCCCTTSHHHH
T ss_pred hHHHHHHHHHHHcCCCccccHHHH
Confidence 469999999999999998888884
No 114
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=36.58 E-value=71 Score=28.19 Aligned_cols=74 Identities=9% Similarity=0.099 Sum_probs=47.9
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecccc------cc
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVA------ET 88 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTnia------e~ 88 (304)
++......+.+||.+|+++-+++..+.+++. ..+.+..++++..... ......|+++|.-. ..
T Consensus 68 ~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~ 139 (395)
T 3pey_A 68 RVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRK 139 (395)
T ss_dssp HCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTT
T ss_pred HhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcC
Confidence 3444445678999999999999988888652 3466777776643221 12235799998521 33
Q ss_pred CCCCCCeeEEE
Q psy11774 89 SITIDDVAYVV 99 (304)
Q Consensus 89 sitI~~V~~VI 99 (304)
.+.+.++++||
T Consensus 140 ~~~~~~~~~iI 150 (395)
T 3pey_A 140 LMQLQKIKIFV 150 (395)
T ss_dssp CBCCTTCCEEE
T ss_pred CcccccCCEEE
Confidence 45677787765
No 115
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=36.55 E-value=16 Score=29.29 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccC--C--Ccccchhhh
Q psy11774 196 EPPDPASITSAATELKLMGVFDQE--E--NLTPLGKRI 229 (304)
Q Consensus 196 ~pP~~~~l~~al~~L~~lgald~~--~--~lT~lG~~l 229 (304)
..-+-.-+..+|+.|+.+|.++.+ | .||+-|+..
T Consensus 94 ~~asg~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~ 131 (144)
T 3u5c_T 94 IDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRD 131 (144)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHH
T ss_pred cccCcHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHH
Confidence 334556688999999999999764 2 699998864
No 116
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=35.29 E-value=31 Score=32.50 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=48.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccccC---CCCCCeeE
Q psy11774 24 FPGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETS---ITIDDVAY 97 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae~s---itI~~V~~ 97 (304)
..+.+||.+|+..-+++..+.+++. +...+..+||+.+..++ ..+...|+|+|.=.=.. ..+.++.+
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~l 228 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGM 228 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCE
Confidence 3468999999999999998888764 33578999999877665 12446799998532111 23456776
Q ss_pred EE
Q psy11774 98 VV 99 (304)
Q Consensus 98 VI 99 (304)
||
T Consensus 229 iI 230 (510)
T 2oca_A 229 MM 230 (510)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 117
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=35.19 E-value=17 Score=32.75 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=26.9
Q ss_pred CCcccCCC--cccchhhhccCCCchhhhHHHHHhhccC
Q psy11774 214 GVFDQEEN--LTPLGKRIAAMPCHPKLSKALVESVIYK 249 (304)
Q Consensus 214 gald~~~~--lT~lG~~l~~lpl~p~~~k~l~~~~~~~ 249 (304)
|+++++|. .|++|+++|++.+++.-.+.+.....-.
T Consensus 1 ~~~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~ 38 (328)
T 3im1_A 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNT 38 (328)
T ss_dssp ---CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTT
T ss_pred CCccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhccc
Confidence 67777664 5799999999999999999988765433
No 118
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=30.82 E-value=29 Score=36.05 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=44.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccccC-C-CCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAETS-I-TIDD 94 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~s-i-tI~~ 94 (304)
.+.+||.+|+.+-+.+..+.+++. .++.+..+||+.+...+...+.. ...|+|+|. ..+.+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCCEEEecHHHHHHHHHcCccccccC
Confidence 678999999999888887777543 25889999999876654333321 246899983 22222 2 4556
Q ss_pred eeEEE
Q psy11774 95 VAYVV 99 (304)
Q Consensus 95 V~~VI 99 (304)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 66555
No 119
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.75 E-value=16 Score=29.49 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHcCCcccC--C--Ccccchhhh
Q psy11774 198 PDPASITSAATELKLMGVFDQE--E--NLTPLGKRI 229 (304)
Q Consensus 198 P~~~~l~~al~~L~~lgald~~--~--~lT~lG~~l 229 (304)
-+-.-+..+|+.|+.+|.++.+ | .||+-|+..
T Consensus 98 asg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~ 133 (146)
T 3iz6_S 98 SSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRD 133 (146)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHH
T ss_pred CCcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHH
Confidence 3456688999999999999754 3 799998864
No 120
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=30.07 E-value=8.9 Score=37.91 Aligned_cols=71 Identities=10% Similarity=0.158 Sum_probs=44.2
Q ss_pred CCcEEEEcCCHHHHHHH-HHHHhcCC--CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-c-----------ccC
Q psy11774 25 PGAILCFLPGWQDIIQV-SRVLSAIP--GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-A-----------ETS 89 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~-~~~L~~~~--~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-a-----------e~s 89 (304)
++.+||.+|+..-+.+. .+.+++.. .+.+..+||+.+..++...+. +...|+|+|.= + ...
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 48899999999888888 77776532 278999999987665433332 23578888742 1 223
Q ss_pred CCCCCeeEEE
Q psy11774 90 ITIDDVAYVV 99 (304)
Q Consensus 90 itI~~V~~VI 99 (304)
+...++++||
T Consensus 132 ~~~~~~~lvV 141 (699)
T 4gl2_A 132 VQLSDFSLII 141 (699)
T ss_dssp CCGGGCSEEE
T ss_pred eecccCcEEE
Confidence 4566777665
No 121
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=28.71 E-value=28 Score=28.25 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHcCCccc--CC-------Ccccchhhh
Q psy11774 198 PDPASITSAATELKLMGVFDQ--EE-------NLTPLGKRI 229 (304)
Q Consensus 198 P~~~~l~~al~~L~~lgald~--~~-------~lT~lG~~l 229 (304)
-+-.-+..+|+.|+.+|.++. +| .||+-|+..
T Consensus 99 asg~iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~~ 139 (155)
T 2xzm_T 99 CHGKILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMTE 139 (155)
T ss_dssp CCHHHHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHHH
T ss_pred CCcHHHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHHH
Confidence 355668899999999999974 33 488888763
No 122
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=27.82 E-value=22 Score=28.81 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=34.3
Q ss_pred CCCcEEEEcCCHHHHHH-HHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 24 FPGAILCFLPGWQDIIQ-VSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 24 ~~g~iLVFlp~~~ei~~-~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
..+.+||.+|+.+-+++ +.+.+... ..+.+..++|+.....+...+.. ...|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVK----SCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHH----HCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhcc----CCCEEEECH
Confidence 36789999999988777 55555432 24788889988654433222111 246888885
No 123
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=26.67 E-value=75 Score=28.31 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=47.0
Q ss_pred ccCCCCCCCcEEEEcCCHHHHHHHHHHHhcC----CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecccc------c
Q psy11774 18 HFPCPSFPGAILCFLPGWQDIIQVSRVLSAI----PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVA------E 87 (304)
Q Consensus 18 ~i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~----~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTnia------e 87 (304)
++......+.+||.+|+++-+.+..+.+++. +.+.+...+++...... ......|+|+|.-. .
T Consensus 88 ~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ivv~T~~~l~~~~~~ 160 (412)
T 3fht_A 88 QVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSK 160 (412)
T ss_dssp HCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT-------CCCCCSEEEECHHHHHHHHTT
T ss_pred HhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh-------hcCCCCEEEECchHHHHHHHh
Confidence 3333444568999999999999887777542 34677777776543321 12234799999521 1
Q ss_pred -cCCCCCCeeEEE
Q psy11774 88 -TSITIDDVAYVV 99 (304)
Q Consensus 88 -~sitI~~V~~VI 99 (304)
..+.+.++++||
T Consensus 161 ~~~~~~~~~~~iV 173 (412)
T 3fht_A 161 LKFIDPKKIKVFV 173 (412)
T ss_dssp SCSSCGGGCCEEE
T ss_pred cCCcChhhCcEEE
Confidence 244556777655
No 124
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=26.54 E-value=82 Score=29.22 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=43.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHhc----CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccccc-------cCCC
Q psy11774 23 SFPGAILCFLPGWQDIIQVSRVLSA----IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAE-------TSIT 91 (304)
Q Consensus 23 ~~~g~iLVFlp~~~ei~~~~~~L~~----~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTniae-------~sit 91 (304)
...+.+||.+|+++-+.++.+.+++ .+.+.+....++...... ......|+|+|+-.= ..+.
T Consensus 160 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Ivv~Tp~~l~~~l~~~~~~~ 232 (479)
T 3fmp_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFID 232 (479)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCCCC
T ss_pred CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc-------ccCCCCEEEECchHHHHHHHhcCCcC
Confidence 3444799999999998888766643 234666666655433211 112347999996332 2456
Q ss_pred CCCeeEEE
Q psy11774 92 IDDVAYVV 99 (304)
Q Consensus 92 I~~V~~VI 99 (304)
+.++.+||
T Consensus 233 ~~~~~~iV 240 (479)
T 3fmp_B 233 PKKIKVFV 240 (479)
T ss_dssp GGGCCEEE
T ss_pred cccCCEEE
Confidence 67888766
No 125
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=24.16 E-value=48 Score=33.00 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=47.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccccCCC-CCCee
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAETSIT-IDDVA 96 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~sit-I~~V~ 96 (304)
++.+|+-.|+++-+.+..+.++.. .++.+..++|+.+.+++. . +..+|+++|+ +...+.. +.+++
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~--~-----~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~ 140 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW--L-----GKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG--G-----GGCSEEEECHHHHHHHHHHTCTTGGGEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc--c-----CCCCEEEECHHHHHHHHHcChhhhhcCC
Confidence 578999999999999988888532 247899999987665432 1 2458999996 2233222 56777
Q ss_pred EEE
Q psy11774 97 YVV 99 (304)
Q Consensus 97 ~VI 99 (304)
+||
T Consensus 141 ~vI 143 (720)
T 2zj8_A 141 ILV 143 (720)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 126
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=23.51 E-value=93 Score=29.86 Aligned_cols=72 Identities=13% Similarity=0.024 Sum_probs=48.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhc-------CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-----ccc--CC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSA-------IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-----AET--SI 90 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~-------~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-----ae~--si 90 (304)
...+||.+|+++-+.++.+.+.+ ...+.+..++|+.....+...+.. +...|+|+|+- .+. ..
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~---~~~~IlV~Tp~~l~~~l~~~~~~ 171 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK---LRPNIVIATPGRLIDVLEKYSNK 171 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHH---HCCSEEEECHHHHHHHHHHHHHH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhc---CCCCEEEECHHHHHHHHHhcccc
Confidence 45799999999999888877754 234678889999887766555532 12469999952 111 23
Q ss_pred CCCCeeEEE
Q psy11774 91 TIDDVAYVV 99 (304)
Q Consensus 91 tI~~V~~VI 99 (304)
.+..+.+||
T Consensus 172 ~~~~~~~lV 180 (579)
T 3sqw_A 172 FFRFVDYKV 180 (579)
T ss_dssp HCTTCCEEE
T ss_pred ccccCCEEE
Confidence 456676654
No 127
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=23.05 E-value=74 Score=32.82 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=49.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHhc---CCCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEeccc-----------c--ccC
Q psy11774 26 GAILCFLPGWQDIIQVSRVLSA---IPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNV-----------A--ETS 89 (304)
Q Consensus 26 g~iLVFlp~~~ei~~~~~~L~~---~~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTni-----------a--e~s 89 (304)
..++|..|+++-..+.++.+.. .-++.+.+++|+++.++|..... -.|+++||= + ...
T Consensus 125 ~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~~------~dIv~gTpgrlgfD~L~D~m~~~~~~ 198 (844)
T 1tf5_A 125 KGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYA------ADITYSTNNELGFDYLRDNMVLYKEQ 198 (844)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHHH------SSEEEEEHHHHHHHHHHHTTCSSGGG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcC------CCEEEECchhhhHHHHHHhhhcchhh
Confidence 3599999999988877766643 23589999999999988776653 269999971 1 113
Q ss_pred CCCCCeeEEE
Q psy11774 90 ITIDDVAYVV 99 (304)
Q Consensus 90 itI~~V~~VI 99 (304)
+...++.|+|
T Consensus 199 l~lr~~~~lV 208 (844)
T 1tf5_A 199 MVQRPLHFAV 208 (844)
T ss_dssp CCCCCCCEEE
T ss_pred hcccCCCEEE
Confidence 5567788776
No 128
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=22.86 E-value=93 Score=26.59 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=37.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC---CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI---PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~---~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn 84 (304)
.+.+||.+|+++-+++..+.+.+. ....+..++++....+ .......|+|+|.
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 458999999999999888888653 2356777887764432 1123457999986
No 129
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=21.92 E-value=70 Score=33.61 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCcccCCCcccchhhhccCCC--chhhhHHHHHhh
Q psy11774 200 PASITSAATELKLMGVFDQEENLTPLGKRIAAMPC--HPKLSKALVESV 246 (304)
Q Consensus 200 ~~~l~~al~~L~~lgald~~~~lT~lG~~l~~lpl--~p~~~k~l~~~~ 246 (304)
...+..-++.|+.+|++|+++.+|..|+..+++.- +.-++-+|..+.
T Consensus 816 ~~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~ 864 (1010)
T 2xgj_A 816 LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGN 864 (1010)
T ss_dssp HHHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccHHHHHHHHHcCc
Confidence 35567778999999999998999999999999975 455555555553
No 130
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=21.61 E-value=1e+02 Score=29.26 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=48.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC-------CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecccc-----cc--CC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI-------PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVA-----ET--SI 90 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~-------~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTnia-----e~--si 90 (304)
...+||.+|+++-+.++.+.++.. ..+.+..++|+.....+...+.. +...|||+|+-. .. ..
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~Iiv~Tp~~l~~~l~~~~~~ 222 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK---LRPNIVIATPGRLIDVLEKYSNK 222 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHH---HCCSEEEECHHHHHHHHHHHHHH
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhc---CCCCEEEECcHHHHHHHHhcccc
Confidence 357999999999999888877541 34668888999887766554432 124799999621 11 12
Q ss_pred CCCCeeEEE
Q psy11774 91 TIDDVAYVV 99 (304)
Q Consensus 91 tI~~V~~VI 99 (304)
.+.++.+||
T Consensus 223 ~~~~~~~lV 231 (563)
T 3i5x_A 223 FFRFVDYKV 231 (563)
T ss_dssp HCTTCCEEE
T ss_pred ccccceEEE
Confidence 456677654
No 131
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=21.41 E-value=83 Score=31.10 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=47.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcC--CCcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecc-----ccccCCC-CCCee
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAI--PGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN-----VAETSIT-IDDVA 96 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~--~~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTn-----iae~sit-I~~V~ 96 (304)
++.+|+..|+++-+.+..+.++.. .++.+..++|.....++. .+..+|+++|+ +...+-. +.++.
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~ 140 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEH-------LGDCDIIVTTSEKADSLIRNRASWIKAVS 140 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSC-------STTCSEEEEEHHHHHHHHHTTCSGGGGCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhh-------ccCCCEEEECHHHHHHHHHcChhHHhhcC
Confidence 578999999999999998888532 247888899986554321 12568999995 3333333 56777
Q ss_pred EEE
Q psy11774 97 YVV 99 (304)
Q Consensus 97 ~VI 99 (304)
+||
T Consensus 141 ~vI 143 (702)
T 2p6r_A 141 CLV 143 (702)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 132
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=21.09 E-value=62 Score=24.73 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCCcccCCCcccchhhhccCCCchhhhHHHHH
Q psy11774 199 DPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVE 244 (304)
Q Consensus 199 ~~~~l~~al~~L~~lgald~~~~lT~lG~~l~~lpl~p~~~k~l~~ 244 (304)
+...+.+++..|...|.|.....-..-|+....+.++|-+.|+.-.
T Consensus 64 s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~kL~~~ 109 (128)
T 2vn2_A 64 SAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEKLVHH 109 (128)
T ss_dssp CHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHHHHHH
Confidence 6678999999999999997544333348887888999988887543
No 133
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=21.02 E-value=1.1e+02 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=28.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHhcCCCcE-EEEecCCC
Q psy11774 25 PGAILCFLPGWQDIIQVSRVLSAIPGLL-VTMAHSKL 60 (304)
Q Consensus 25 ~g~iLVFlp~~~ei~~~~~~L~~~~~~~-v~~lhs~l 60 (304)
.+.+||++|+.+-++++.+.+.+. ++. +..++|+.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~-~~~~v~~~~g~~ 168 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIF-GEEYVGEFSGRI 168 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGG-CGGGEEEESSSC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-CCCeEEEEeCCC
Confidence 578999999999999988888774 366 77787764
No 134
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=20.52 E-value=90 Score=29.51 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=40.9
Q ss_pred cCCCCCCCcEEEEcCCHHHHHHHHHHHhcCC---CcEEEEecCCCCHHHHhhhhcCCCCCCeEEEEecccc------ccC
Q psy11774 19 FPCPSFPGAILCFLPGWQDIIQVSRVLSAIP---GLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVA------ETS 89 (304)
Q Consensus 19 i~~~~~~g~iLVFlp~~~ei~~~~~~L~~~~---~~~v~~lhs~l~~~~q~~~~~~~~~g~~kvilaTnia------e~s 89 (304)
+......+.+||.+|+++-+.+..+.+++.. .+.+...+++...... .....|+++|.-. ...
T Consensus 183 l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~Ivv~T~~~l~~~l~~~~ 254 (508)
T 3fho_A 183 VDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA--------KIDAQIVIGTPGTVMDLMKRRQ 254 (508)
T ss_dssp SCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTC
T ss_pred HHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc--------cCCCCEEEECHHHHHHHHHcCC
Confidence 3344446689999999999999988886532 2333333333221111 1135799998432 124
Q ss_pred CCCCCeeEEE
Q psy11774 90 ITIDDVAYVV 99 (304)
Q Consensus 90 itI~~V~~VI 99 (304)
+...++++||
T Consensus 255 ~~~~~~~lII 264 (508)
T 3fho_A 255 LDARDIKVFV 264 (508)
T ss_dssp SCCTTCCEEE
T ss_pred ccccCCCEEE
Confidence 5677788666
Done!