RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11774
(304 letters)
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 199 bits (509), Expect = 8e-59
Identities = 88/244 (36%), Positives = 120/244 (49%), Gaps = 28/244 (11%)
Query: 25 PGAILCFLPGWQDIIQVSRVLS----------AIPGLLVTMAHSKLDTEVQGAIFGHPPP 74
G IL FL G +I R +S L V + L Q IF P
Sbjct: 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPE 362
Query: 75 GM-----RKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVN 129
RKVV+STN+AETS+TID + YVVD G K+ YN + + SL IS+AS
Sbjct: 363 SHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQ 422
Query: 130 QRAGRAGRTKPGESFHLYSEDRYR-RMAEYSLPEIFRKPLEQILLTCK---VGESLYSTE 185
QRAGRAGRT+PG+ F LY+E+ ++ + E S PEI R L +L K + + +
Sbjct: 423 QRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLV---- 478
Query: 186 RCSSFLSQLPEPPDPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVES 245
F+ PP P ++ A EL + D E NLTPLG+ + P P L+ L+ S
Sbjct: 479 HF-DFMD----PPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGS 533
Query: 246 VIYK 249
++
Sbjct: 534 FEFQ 537
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 125 bits (315), Expect = 2e-32
Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 12/139 (8%)
Query: 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84
G L F + +++ LS G+ + LD V P VV++T+
Sbjct: 396 GGRHLIFCHSKKKCDELAAKLSG-LGINAVAYYRGLDVSVI-------PTIGDVVVVATD 447
Query: 85 VAETSITIDDVAYVVDTGCHKETRYNSKDD---LVSLDNQWISRASVNQRAGRAGRTKPG 141
T T D V+D + D + S +QR GR GR + G
Sbjct: 448 ALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRG 506
Query: 142 ESFHLYSEDRYRRMAEYSL 160
+ +R M + S+
Sbjct: 507 IYRFVTPGERPSGMFDSSV 525
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 119 bits (301), Expect = 4e-31
Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 15/152 (9%)
Query: 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84
FLP + ++ L G V + + K I +L+T+
Sbjct: 177 KRPTAWFLPSIRAANVMAASLRK-AGKSVVVLNRKTFEREYPTI----KQKKPDFILATD 231
Query: 85 VAETSITIDDVAYVVDTG-CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRT--KPG 141
+AE + V V+D K + + IS +S QR GR GR + G
Sbjct: 232 IAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDG 290
Query: 142 ESFHLYSEDRYRRMAEYSLPEIFRKPLEQILL 173
+S++ E +LL
Sbjct: 291 DSYYYSEPTSENNAHHVCWLEA------SMLL 316
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 119 bits (300), Expect = 4e-31
Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 15/151 (9%)
Query: 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84
G + F+ + ++ L G V + K V++T+
Sbjct: 171 DGRTVWFVHSIKQGAEIGTCLQK-AGKKVLYLNRKTFESEYPKC----KSEKWDFVITTD 225
Query: 85 VAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTK--PGE 142
++E V+D + I+ AS QR GR GR G+
Sbjct: 226 ISEMGANFK-ADRVIDPR-KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283
Query: 143 SFHLYSEDRYRRMAEYSLPEIFRKPLEQILL 173
+ S E ++LL
Sbjct: 284 IYAYSGNVSSDNEGHVSWTEA------RMLL 308
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 119 bits (301), Expect = 4e-31
Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 15/168 (8%)
Query: 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84
G + F+P + ++ L G V K V++T+
Sbjct: 188 QGKTVWFVPSIKAGNDIANCLRK-SGKRVIQLSRKTFDTEYPKT----KLTDWDFVVTTD 242
Query: 85 VAETSITIDDVAYVVDTGCHKE--TRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGE 142
++E V+D + + + ++ ++ AS QR GR GR E
Sbjct: 243 ISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301
Query: 143 SFHLYS----EDRYRRMAEYSLPEIFRKPLEQILLTCKVGESLYSTER 186
A ++ ++ L+ I + +L+ ER
Sbjct: 302 DDQYVFSGDPLKNDEDHAHWTEAKML---LDNIYTPEGIIPTLFGPER 346
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 121 bits (305), Expect = 5e-31
Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 16/154 (10%)
Query: 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84
G + F+P + ++ L G V K V++T+
Sbjct: 355 QGKTVWFVPSIKAGNDIANCLRK-SGKRVIQLSRKTFDTEYPKT----KLTDWDFVVTTD 409
Query: 85 VAETSITIDDVAYVVDTGCHKE--TRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGE 142
++E V+D + + + ++ ++ AS QR GR GR E
Sbjct: 410 ISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 468
Query: 143 SF-HLYSEDRYRRMAEYSL-PEIFRKPLEQILLT 174
+++S D + +++ E ++LL
Sbjct: 469 DDQYVFSGDPLKNDEDHAHWTEA------KMLLD 496
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 115 bits (289), Expect = 2e-29
Identities = 30/181 (16%), Positives = 59/181 (32%), Gaps = 22/181 (12%)
Query: 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84
G + F+ + +++ L G V + K G V++T+
Sbjct: 190 AGKTVWFVASVKMGNEIAMCLQRA-GKKVIQLNRKSYDTEYPKC----KNGDWDFVITTD 244
Query: 85 VAETSITIDDVAYVVDTG--CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGE 142
++E + V+D + ++ + I+ AS QR GR GR
Sbjct: 245 ISEMGANF-GASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQV 303
Query: 143 SFHLY-----SEDRYRRMAEYSLPEIFRKPLEQILLTCKVGESLYSTERCSSFLSQLPEP 197
Y + + +A ++ +I L+ I + + LY ER +
Sbjct: 304 -GDEYHYGGATSEDDSNLAHWTEAKIM---LDNIHMPNGLVAQLYGPER-----EKAFTM 354
Query: 198 P 198
Sbjct: 355 D 355
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 113 bits (285), Expect = 2e-28
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84
G + F+ + ++++ L G V +L+ + + G V++T+
Sbjct: 410 AGKTVWFVASVKMSNEIAQCLQR-AGKRVI----QLNRKSYDTEYPKCKNGDWDFVITTD 464
Query: 85 VAETSITIDDVAYVVDTG-CHKETRYNSKDD-LVSLDNQWISRASVNQRAGRAGRTKPG 141
++E + V+D K T + + ++ I+ AS QR GR GR
Sbjct: 465 ISEMGANF-GASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQ 522
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase,
mRNA processing, splicing, nucleotide-binding, nucleus,
phosphoprotein, SPLI; 2.10A {Homo sapiens}
Length = 270
Score = 54.6 bits (132), Expect = 7e-09
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 194 LPEPPDPA-SITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVESVIYK 249
L P ++ +A +L +G D E LT LG+R+A P P L K L+ SV
Sbjct: 10 LGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLG 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 2e-04
Identities = 56/359 (15%), Positives = 96/359 (26%), Gaps = 159/359 (44%)
Query: 36 QDIIQV---SRVLSAIPGLLVTMAHSKLDTEVQG------AIFG---------------- 70
+++I+ +R+++ P ++S L V AIFG
Sbjct: 120 KELIKNYITARIMAKRP--FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 71 -HPPPGMRKVV--LSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRAS 127
+ ++ + ++E T D V G +++ +W+ S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL----------NIL----EWLENPS 223
Query: 128 VNQRAGRAGRTKPGESFHLYSEDRYRRMAEYSLPEIFRKPLEQILLTCKV-----GE--- 179
P + + L S S P I L ++T K+ GE
Sbjct: 224 ----------NTPDKDY-LLS-------IPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 180 SLYSTERCS----------------SFL----------------SQL--PEPPDPASITS 205
L S SF P P SI
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 206 AATE---------LKLMGVFDQEENLTPLGKRIAAM----PCHPKLSKALVES----VIY 248
+ E L + + QE+ + + P ++ +LV V+
Sbjct: 326 DSLENNEGVPSPMLSISNL-TQEQ----VQDYVNKTNSHLPAGKQVEISLVNGAKNLVV- 379
Query: 249 KGNCNC------YGLIV----PKSKREGRQDR-----RKP---------AAPLFQFYSS 283
YGL + K+ Q R RK A+P F+S
Sbjct: 380 -----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP---FHSH 430
Score = 34.3 bits (78), Expect = 0.063
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 37/90 (41%)
Query: 9 WQ-TTFFYSTHFPCPSFPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGA 67
W+ TT F +TH IL F PG S + G+L G
Sbjct: 490 WETTTQFKATH---------ILDFGPG-----GASGL-----GVLT-------HRNKDGT 523
Query: 68 IFGHPPPGMRKVVLSTNVAETSITIDDVAY 97
G+R V+++ + + + DD +
Sbjct: 524 -------GVR-VIVAGTL-DINPD-DDYGF 543
Score = 31.6 bits (71), Expect = 0.38
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 18/93 (19%)
Query: 168 LEQILLTCKVGESLYS--TERCSSFLSQLPEPPDPASI---TSAATEL--KLMGVFDQEE 220
LE +LL V + + ++ F LPEP + + + EL K +G
Sbjct: 16 LEHVLL---VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 221 NLTPLGKRIAAMPCHPKLSKALV--ESVIYKGN 251
+ +G+ L+ L E+ +GN
Sbjct: 73 EPSKVGQFDQV------LNLCLTEFENCYLEGN 99
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 34.0 bits (77), Expect = 0.055
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 18/77 (23%)
Query: 75 GMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGR 134
G V+++T+V E + + +V VV Y + V + I QR GR
Sbjct: 418 GEFNVLVATSVGEEGLDVPEVDLVV--------FY----EPVPSAIRSI------QRRGR 459
Query: 135 AGRTKPGESFHLYSEDR 151
GR PG L ++
Sbjct: 460 TGRHMPGRVIILMAKGT 476
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 33.7 bits (77), Expect = 0.072
Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 23/149 (15%)
Query: 121 QWISRASVNQRAGRAGRT---KPGESFHLYSEDRYRRMAEYSL---PE------IFRKPL 168
+ I V+Q GRAGR + GE + + D R + + + PE L
Sbjct: 355 ERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNL 414
Query: 169 EQILLTCKVGESLYSTERCSSFLS------QLPEPPD-PASITSAATELKLMGVFDQEEN 221
+L + E F+S Q + I + L +
Sbjct: 415 RSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLE 474
Query: 222 L----TPLGKRIAAMPCHPKLSKALVESV 246
LG R A + P +K + +
Sbjct: 475 DKIRPLSLGIRTAKLYIDPYTAKMFKDKM 503
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.30
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 261 KSKREGRQDRRKPAAPLFQFYSSKIDETRNEKMREEDEEEKRRR 304
++E R+ +K Q S ++++ + R D+ ++
Sbjct: 107 VMEQEWREKAKKDLEEWNQRQSEQVEKNKIN-NRIADKAFYQQP 149
Score = 30.5 bits (68), Expect = 0.40
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 287 ETRNEKMREEDEEEKRRR 304
E + ++++E D K
Sbjct: 92 EEQRKRLQELDAASKVME 109
Score = 26.7 bits (58), Expect = 7.4
Identities = 6/23 (26%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 283 SKIDETRNE--KMREEDEEEKRR 303
++ D E +R+ EE+++R
Sbjct: 75 AQADRLTQEPESIRKWREEQRKR 97
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2,
protein structure initiative; 1.80A {Clostridium
acetobutylicum}
Length = 65
Score = 26.9 bits (60), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 245 SVIYKGNCNCYGLIVPKSKRE 265
+V+YK YGLI P+ +
Sbjct: 41 NVVYKRKDGNYGLIEPELEHH 61
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 1.8
Identities = 22/169 (13%), Positives = 43/169 (25%), Gaps = 67/169 (39%)
Query: 105 KETRYNSKDDLVSLDNQW----------------ISRASVNQRAGRAGRTKPGESFHLYS 148
K Y ++ L+ L N +R A T H+
Sbjct: 239 KSKPY--ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-----HISL 291
Query: 149 EDRYRRMAEYSLPEIFRK---------PLE--QI--LLTCKVGESL------------YS 183
+ + + + K P E + ES+ +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 184 TERCS----SFLSQLPEPPDPASITSAATELK----LMGVFDQEENLTP 224
++ + S L+ L +PA E + + VF ++
Sbjct: 352 CDKLTTIIESSLNVL----EPA-------EYRKMFDRLSVFPPSAHIPT 389
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 29.0 bits (65), Expect = 2.1
Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 21/144 (14%)
Query: 121 QWISRASVNQRAGRAGRT---KPGESF----HLYSEDRYRRMAEYSLPEI-----FRKPL 168
+ I + Q AGRAGR + GE+ E +R I L
Sbjct: 356 KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHL 415
Query: 169 EQILLTCKVGESLYSTERCSSFLS------QLPEPPDPASITSAATELKLMGVFDQEENL 222
L+ + E F + Q + +L+ G+ + +L
Sbjct: 416 RFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL-SYELERVVRQLENWGMVVEAAHL 474
Query: 223 --TPLGKRIAAMPCHPKLSKALVE 244
T LG ++ + P +
Sbjct: 475 APTKLGSLVSRLYIDPLTGFIFHD 498
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 28.6 bits (64), Expect = 2.9
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 145 HLYSEDRYRRMAEYSLPEIFRKPLEQILLTCKVGESLYSTERCSS-FLSQLPEPPDPASI 203
Y+++ R+ +L ++R LE L S + + I
Sbjct: 54 LQYTQEDLFRLTLETL-PLWRA-LESRC-----ERRLI--HEIGSLWFGDTDVVTNEGQI 104
Query: 204 TSAATELKLMGV 215
+ A + + V
Sbjct: 105 SGTAAMMDKLSV 116
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 28.2 bits (63), Expect = 4.2
Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 26/148 (17%)
Query: 121 QWISRASVNQRAGRAGRT---KPGESFHLYSEDR-----YRRMAEYSLPEI-----FRKP 167
I Q +GRAGR + GES + + +++ + I +
Sbjct: 376 DEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERA 435
Query: 168 LEQILLTCKVGESLYSTERCSSFLS------QLPEPPDPASITSAATELKLMGVFDQEEN 221
LL E S ++ +F QL + A L +E N
Sbjct: 436 FYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDV----YFDRAIRWLLEHSFIKEEGN 491
Query: 222 ---LTPLGKRIAAMPCHPKLSKALVESV 246
LT GKR+A + +P + + + +
Sbjct: 492 TFALTNFGKRVADLYINPFTADIIRKGL 519
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 27.6 bits (61), Expect = 5.8
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 88 TSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLY 147
+ + AYV G ++ +DL + +N + L
Sbjct: 113 VTFVHNGKAYVT-GGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171
Query: 148 S 148
S
Sbjct: 172 S 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.409
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,569,292
Number of extensions: 259253
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 25
Length of query: 304
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 211
Effective length of database: 4,105,140
Effective search space: 866184540
Effective search space used: 866184540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)