RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11774
(304 letters)
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 104 bits (260), Expect = 1e-26
Identities = 33/226 (14%), Positives = 60/226 (26%), Gaps = 20/226 (8%)
Query: 24 FPGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLST 83
FLP + ++ L G V + + K I +L+T
Sbjct: 35 DKRPTAWFLPSIRAANVMAASLRKA-GKSVVVLNRKTFEREYPTIKQK----KPDFILAT 89
Query: 84 NVAETSITIDDVAYVVDTG-CHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGE 142
++AE + V V+D K + + IS +S QR GR GR +
Sbjct: 90 DIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD 148
Query: 143 S----FHLYSEDRYRRMAEYSLPEIFRKPLEQILLTCKVGESLYSTERCSSFLSQLPEPP 198
+ + + + + +E + LY E +
Sbjct: 149 GDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG---GMVAPLYGVEG--TKT----PVS 199
Query: 199 DPASITSAATELKLMGVFDQEENLTPLGKRIAAMPCHPKLSKALVE 244
+ + L ++A K E
Sbjct: 200 PGEMRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWCFE 245
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 70.0 bits (170), Expect = 2e-14
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 25 PGAILCFLPGWQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTN 84
G + F+P + ++ L G V K V++T+
Sbjct: 178 KGKTVWFVPSIKAGNDIAACLRKN-GKKVIQLSRKTFDSEYI----KTRTNDWDFVVTTD 232
Query: 85 VAETSITIDDVAYVVDTGCHKET--RYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGE 142
++E V+D + + ++ ++ ++ +S QR GR GR E
Sbjct: 233 ISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNE 291
Query: 143 SF-HLYSEDRY 152
+ ++Y +
Sbjct: 292 NDQYIYMGEPL 302
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 38.0 bits (87), Expect = 8e-04
Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 18/104 (17%)
Query: 47 AIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKE 106
G L Q I G V+++T+V E + + +V VV
Sbjct: 190 RFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV------- 242
Query: 107 TRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSED 150
S QR GR GR PG L ++
Sbjct: 243 -----------FYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKG 275
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 32.6 bits (73), Expect = 0.039
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 11/126 (8%)
Query: 40 QVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVV 99
++SR L+ H+ L + + G KVV++T + + +
Sbjct: 84 EMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVI- 142
Query: 100 DTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRAGRTKPGESFHLYSEDRYRRMAE-- 157
R++ + + ++ A RAGR G + GE+ + + +
Sbjct: 143 ---VRSLYRFDGYSKRIKVS-EYKQMAG---RAGRPGMDERGEAIIIVGKRDREIAVKRY 195
Query: 158 -YSLPE 162
+ PE
Sbjct: 196 IFGEPE 201
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 29.9 bits (67), Expect = 0.35
Identities = 14/67 (20%), Positives = 17/67 (25%), Gaps = 15/67 (22%)
Query: 75 GMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGR 134
G V+ N T + + S QR GR
Sbjct: 95 GDFDSVIDCNTCVTQTVDFSLDPTF---------------TIETTTLPQDAVSRTQRRGR 139
Query: 135 AGRTKPG 141
GR KPG
Sbjct: 140 TGRGKPG 146
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 29.4 bits (65), Expect = 0.46
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 35 WQDIIQVSRVLSAIPGLLVTMAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDD 94
D + VL + + +A E++ IF + ++ + + D
Sbjct: 129 KLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKD 188
Query: 95 V 95
V
Sbjct: 189 V 189
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 28.3 bits (62), Expect = 0.84
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 7/95 (7%)
Query: 55 MAHSKLDTEVQGAIFGHPPPGMRKVVLSTNVAETSITIDDVAYVVDTGCHKETRYNSKDD 114
+ + + AI R+ +L +V + E +
Sbjct: 105 LVYRISKVFLIPAITHRTSREEREEILEGF------RTGRFRAIVSSQVLDEGIDVPDAN 158
Query: 115 LVSLDNQWISRASVNQRAGRAGRTKP-GESFHLYS 148
+ + + S QR GR R + LY
Sbjct: 159 VGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 193
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 28.4 bits (62), Expect = 1.1
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 94 DVAYVVDTGCHKETRYNSKDDLVSLDNQWISRASVNQRAGRA---GRTKPGESFHLYSED 150
+ +++ + + + + + + A+ Q R G+ K + L S
Sbjct: 171 EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 230
>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii
[TaxId: 354]}
Length = 123
Score = 26.5 bits (58), Expect = 2.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 63 EVQGAIFGHPPPGMRKVV 80
E+Q + G PPP + K+V
Sbjct: 106 ELQTVMAGSPPPWLAKLV 123
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 26.6 bits (58), Expect = 2.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 130 QRAGRAGRTKPG 141
QR GR GR KPG
Sbjct: 117 QRRGRTGRGKPG 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.409
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,122,771
Number of extensions: 49780
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 10
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)