BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11778
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
           Cysteine-Rich Domain Of Frizzled 8
          Length = 316

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 95/173 (54%), Gaps = 35/173 (20%)

Query: 107 SREAAFTYAITSAGVTYAITSACSRGNISNCGCEIYRPRHRQRHRSGGAGSSDPASNWRH 166
           +RE +F +AI+SAGV Y +T  CS G+  NCGC                   D + N R 
Sbjct: 61  TRETSFVHAISSAGVMYTLTRNCSMGDFDNCGC-------------------DDSRNGR- 100

Query: 167 RSSGEPSSIGGAGELEPASNWKWGGCSVDIGFAMRYARQFLDSREIEGDARSLMNLHNNK 226
                   IGG G       W WGGCS +  F  R ++ F+D  E   DAR+LMNLHNN+
Sbjct: 101 --------IGGRG-------WVWGGCSDNAEFGERISKLFVDGLETGQDARALMNLHNNE 145

Query: 227 AGRKMVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKYWKARGMD 279
           AGR  VK  ++  CKCHG+SGSC+++TCW  L  F+ IG+ L  K+ +A  ++
Sbjct: 146 AGRLAVKETMKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKLE 198



 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 11/66 (16%)

Query: 51  VLTLALRKRSGRSTGLQRPRRA-----------ELVYLESSPNYCERDLSLGSLGTAGRH 99
            L L + KR  RS      R A           EL++LE SP+YC +++SLG  GT GR 
Sbjct: 194 ALKLEMDKRKMRSGNSADNRGAIADAFSSVAGSELIFLEDSPDYCLKNISLGLQGTEGRE 253

Query: 100 CNRTSR 105
           C ++ +
Sbjct: 254 CLQSGK 259



 Score = 33.9 bits (76), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 301 CRCKFNWCCSVQCDTCAESV 320
           C CKF+WCC+V+C+ C + V
Sbjct: 291 CNCKFHWCCTVKCEQCKQVV 310


>pdb|2B1X|A Chain A, Crystal Structure Of Naphthalene 1,2-dioxygenase From
           Rhodococcus Sp.
 pdb|2B1X|C Chain C, Crystal Structure Of Naphthalene 1,2-dioxygenase From
           Rhodococcus Sp.
 pdb|2B1X|E Chain E, Crystal Structure Of Naphthalene 1,2-dioxygenase From
           Rhodococcus Sp.
 pdb|2B24|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
           Rhodococcus Sp. Bound To Indole
 pdb|2B24|C Chain C, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
           Rhodococcus Sp. Bound To Indole
 pdb|2B24|E Chain E, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
           Rhodococcus Sp. Bound To Indole
          Length = 470

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 140 EIYRPRHRQRHRSGGAGSSDPASNWR---------HRSSGEPSSIGGAGELEPASNWKWG 190
           E Y+   R    SGG    D A NWR            +GE +   G G LEP  NW   
Sbjct: 353 ESYKSYLRTFGISGGFEQDD-AENWRSITRVMGGQFAKTGELNYQMGRGVLEPDPNWTGP 411

Query: 191 GCSVDIGFAMRYARQFLD 208
           G +  + +A    R FL+
Sbjct: 412 GEAYPLDYAEANQRNFLE 429


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,962,819
Number of Sequences: 62578
Number of extensions: 354928
Number of successful extensions: 580
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 4
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)