Query psy11778
Match_columns 324
No_of_seqs 243 out of 1012
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 18:43:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3913|consensus 100.0 5.5E-84 1.2E-88 620.3 13.6 226 54-324 68-354 (356)
2 smart00097 WNT1 found in Wnt-1 100.0 5.8E-77 1.2E-81 569.1 14.6 226 54-324 19-303 (305)
3 PF00110 wnt: wnt family; Int 100.0 3.3E-72 7.2E-77 538.2 10.3 227 54-324 22-308 (310)
4 KOG3913|consensus 99.9 1.2E-25 2.6E-30 217.1 6.8 97 8-108 205-309 (356)
5 smart00097 WNT1 found in Wnt-1 99.9 5.6E-23 1.2E-27 197.3 6.3 95 8-108 156-258 (305)
6 PF00110 wnt: wnt family; Int 99.8 1.1E-21 2.4E-26 188.9 0.3 94 8-106 160-261 (310)
7 PF00034 Cytochrom_C: Cytochro 27.0 12 0.00027 27.4 -1.3 25 8-32 8-37 (91)
8 PF10643 Cytochrome-c551: Phot 22.7 36 0.00078 31.7 0.7 28 7-43 175-202 (233)
9 PHA02100 hypothetical protein 17.2 86 0.0019 25.7 1.6 41 193-236 22-63 (112)
10 TIGR02603 CxxCH_TIGR02603 puta 14.3 57 0.0012 27.5 -0.0 21 10-30 12-35 (133)
No 1
>KOG3913|consensus
Probab=100.00 E-value=5.5e-84 Score=620.33 Aligned_cols=226 Identities=52% Similarity=1.032 Sum_probs=200.5
Q ss_pred hhhhhccCCCCCCCCCCCCceEEeecCCCccccCcCCCCCCCCCCcccccCCCCcchhhHHHHHHHHHHHHHHhhccCCC
Q psy11778 54 LALRKRSGRSTGLQRPRRAELVYLESSPNYCERDLSLGSLGTAGRHCNRTSRGSREAAFTYAITSAGVTYAITSACSRGN 133 (324)
Q Consensus 54 ~~~s~~~g~~~~~~~~~~~~LvYle~SPdyC~~~~~~g~~GT~GR~Cn~ts~GtREtAfv~Ai~sAgv~~~vtraCs~G~ 133 (324)
++.++..|++.+++++..| |.... |+|.......++ | ..++.|+||+||||||+||||+|+|||||++|+
T Consensus 68 ~~~sv~~G~~~~i~ECq~Q---Fr~~R-WNCs~~~~~~~~---g---~~l~~g~REsAFv~AIssAgV~havtraCs~G~ 137 (356)
T KOG3913|consen 68 VMPSVAEGAREGIQECQFQ---FRFRR-WNCSTLDQLPVF---G---PLLSRGTRETAFVYAISSAGVAHAVTRACSQGN 137 (356)
T ss_pred hHHHHHHHHHHHHHHHHHH---HHhhc-cCCCCCcccccc---c---hhhcccchHHHHHHHHHHhHHHHHHHHHhcCCC
Confidence 4556666777788898886 54444 456543222333 2 347889999999999999999999999999999
Q ss_pred CCcccCCCCCccccccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhccchhhc
Q psy11778 134 ISNCGCEIYRPRHRQRHRSGGAGSSDPASNWRHRSSGEPSSIGGAGELEPASNWKWGGCSVDIGFAMRYARQFLDSREIE 213 (324)
Q Consensus 134 l~~CgC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WgGCsdnv~~G~~~sk~Fld~~e~~ 213 (324)
|+.||||.. ++ + ...+++|+||||||||+||++|||.|||++|+.
T Consensus 138 l~~CgCd~~-~~---------------------------------~-~~~~~~w~WGGCsDnv~fG~~fsr~FlD~re~~ 182 (356)
T KOG3913|consen 138 LESCGCDPS-PN---------------------------------G-KSGPEGWEWGGCSDNVDFGIRFSRKFLDAREKR 182 (356)
T ss_pred CCCcCCCCC-CC---------------------------------C-CCCCCCccccCCCCchHHHHHHHHHhccccccc
Confidence 999999977 43 0 223456999999999999999999999999999
Q ss_pred cchhHHHHhhhhhhhHHHHHhccccceeecCCCCCcccceecccCCCchHHHHHHHHHHhcc------------------
Q psy11778 214 GDARSLMNLHNNKAGRKMVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKYWKA------------------ 275 (324)
Q Consensus 214 ~~~~~~mnlHNn~aGR~av~~~~~~~CkCHG~SGSC~~ktCw~~l~~f~~vg~~Lk~ky~~A------------------ 275 (324)
+|++++||||||+|||+||.++|+++||||||||||++||||++||+|++||++||+|||+|
T Consensus 183 ~d~r~lmnlHNNeaGR~av~~~m~~~CKCHGvSGSC~~KTCW~~lp~Fr~vG~~Lk~KYd~A~~V~~~~~~~~~~~~~~~ 262 (356)
T KOG3913|consen 183 KDARALMNLHNNEAGRKAVKKNMRRECKCHGVSGSCTVKTCWKQLPDFREVGDYLKEKYDGAIKVTVNNRGRRSAPALRP 262 (356)
T ss_pred cCHHHHHHHhhhHHHHHHHHHhhhhcccccCccccchhhhHHhhCccHHHHHHHHHHHhhhheEEeeccCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------CCCCCccccccCCCeeeEEEEEEEeecceEEeeeEEE
Q psy11778 276 -------------------------------------------RGMDGCDLMCCGRGYNTHQISRAWQCRCKFNWCCSVQ 312 (324)
Q Consensus 276 -------------------------------------------~g~~~C~~lCCGrG~~t~~~~~~~~C~CkF~WCC~V~ 312 (324)
.|+|+|++|||||||+|++++++|+|||||||||+|+
T Consensus 263 ~~~~~~~~~~~dLVYle~SPdfC~~~~~~Gs~GT~GR~Cn~ts~g~dgC~~LCCGRGynt~~~~~~e~C~CkFhWCC~V~ 342 (356)
T KOG3913|consen 263 EKPRFKPPTETDLVYLEDSPDYCERNKKTGSLGTQGRECNKTSRGSDGCDLLCCGRGYNTRRVEVVERCHCKFHWCCYVK 342 (356)
T ss_pred cccccCCCCCCceEEecCCChhhccCccCCCCCCCCcccCCCCCCCCCCccccCCCCCceeEEEEEEecCCEEEEeeEEE
Confidence 5679999999999999999999999999999999999
Q ss_pred CcccceEEEEEC
Q psy11778 313 CDTCAESVEVYT 324 (324)
Q Consensus 313 C~~C~~~~~~~~ 324 (324)
|++|++++++|+
T Consensus 343 C~~C~~~~~v~t 354 (356)
T KOG3913|consen 343 CKECRERVEVYT 354 (356)
T ss_pred CcccccEEEeee
Confidence 999999999996
No 2
>smart00097 WNT1 found in Wnt-1.
Probab=100.00 E-value=5.8e-77 Score=569.14 Aligned_cols=226 Identities=48% Similarity=0.987 Sum_probs=196.5
Q ss_pred hhhhhccCCCCCCCCCCCCceEEeecCCCccccCcCCCCCCCCCCcccccCCCCcchhhHHHHHHHHHHHHHHhhccCCC
Q psy11778 54 LALRKRSGRSTGLQRPRRAELVYLESSPNYCERDLSLGSLGTAGRHCNRTSRGSREAAFTYAITSAGVTYAITSACSRGN 133 (324)
Q Consensus 54 ~~~s~~~g~~~~~~~~~~~~LvYle~SPdyC~~~~~~g~~GT~GR~Cn~ts~GtREtAfv~Ai~sAgv~~~vtraCs~G~ 133 (324)
++.++..|+..++.+++.+ |.| ..|+|........ .-+.+..|+||+||||||+||||+|+||+||++|+
T Consensus 19 ~~~~v~~g~~~ai~ECq~Q-F~~---~rWNCs~~~~~~~------~~~~l~~~trEtAfv~Ai~sAgv~~~itraCs~G~ 88 (305)
T smart00097 19 VMISVAEGAQEGIEECQHQ-FRF---RRWNCSTLDNASV------FGKVLRQGTRETAFVYAISSAGVAHAVTRACSEGE 88 (305)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCC---CCCCCCCCcCCcc------cccccccccchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445556666777889887 444 6677864211111 12457789999999999999999999999999999
Q ss_pred CCcccCCCCCccccccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhccchhhc
Q psy11778 134 ISNCGCEIYRPRHRQRHRSGGAGSSDPASNWRHRSSGEPSSIGGAGELEPASNWKWGGCSVDIGFAMRYARQFLDSREIE 213 (324)
Q Consensus 134 l~~CgC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WgGCsdnv~~G~~~sk~Fld~~e~~ 213 (324)
|.+|+||.. ++ + ....++|+||||+|||.||++||++|||+++..
T Consensus 89 l~~C~Cd~~-~~---------------------------------~-~~~~~~w~WgGCsdnv~~G~~~s~~FlD~~~~~ 133 (305)
T smart00097 89 LDSCGCDYR-KR---------------------------------G-RAGGRGWKWGGCSDNIDFGIRFSREFVDARERG 133 (305)
T ss_pred CCCCCCCCC-CC---------------------------------C-CCCCCCcccCCCCccHHHHHHHHHHHHhccccc
Confidence 999999876 32 0 111247999999999999999999999999888
Q ss_pred cchhHHHHhhhhhhhHHHHHhccccceeecCCCCCcccceecccCCCchHHHHHHHHHHhcc------------------
Q psy11778 214 GDARSLMNLHNNKAGRKMVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKYWKA------------------ 275 (324)
Q Consensus 214 ~~~~~~mnlHNn~aGR~av~~~~~~~CkCHG~SGSC~~ktCw~~l~~f~~vg~~Lk~ky~~A------------------ 275 (324)
.|++++||||||+|||+||.++|+.+||||||||||++||||++||+|++||+.||+||++|
T Consensus 134 ~d~r~lmnlHNn~aGR~~v~~~~~~~CkCHGvSGSC~~kTCw~~l~~Fr~Ig~~Lk~kY~~A~~V~~~~~~~~~~l~~~~ 213 (305)
T smart00097 134 KDARALMNLHNNEAGRLAVKKTMKRECKCHGVSGSCTVKTCWLQLPDFRKVGDYLKEKYDGASEVEVDKRGTNKAPVPKN 213 (305)
T ss_pred ccHHHHHHHhhhHHHHHHHHHHHHHhccccCccCCccccchHhhCCCHHHHHHHHHHHhccceEeeecccccccccccCC
Confidence 89999999999999999999999999999999999999999999999999999999999988
Q ss_pred -----------------------------------------CCCCCccccccCCCeeeEEEEEEEeecceEEeeeEEECc
Q psy11778 276 -----------------------------------------RGMDGCDLMCCGRGYNTHQISRAWQCRCKFNWCCSVQCD 314 (324)
Q Consensus 276 -----------------------------------------~g~~~C~~lCCGrG~~t~~~~~~~~C~CkF~WCC~V~C~ 314 (324)
.++|+|++|||||||+|++++++++|||||||||+|+||
T Consensus 214 ~~~~~~~~~dLVYle~SPdyC~~n~~~G~~GT~GR~Cn~~s~~~~~C~~LCCgRGy~t~~~~~~~~C~CkF~WCC~V~C~ 293 (305)
T smart00097 214 STFKPPTETDLVYLESSPDFCEKNPKTGSLGTQGRQCNKTSKGLDGCDLLCCGRGYNTRTVEVVERCNCKFHWCCYVKCK 293 (305)
T ss_pred ccCCCCCCCCeEEeCCCCcccccCCCcCCCCCCCCccCCCCCCCCChhhcCCCCCceeEEEEEEEecCCEEEEeeEEECc
Confidence 446899999999999999999999999999999999999
Q ss_pred ccceEEEEEC
Q psy11778 315 TCAESVEVYT 324 (324)
Q Consensus 315 ~C~~~~~~~~ 324 (324)
+|.+++++|+
T Consensus 294 ~C~~~~~~~~ 303 (305)
T smart00097 294 QCRETVEKHT 303 (305)
T ss_pred cCCcEEEEEE
Confidence 9999999985
No 3
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=100.00 E-value=3.3e-72 Score=538.21 Aligned_cols=227 Identities=50% Similarity=0.986 Sum_probs=160.1
Q ss_pred hhhhhccCCCCCCCCCCCCceEEeecCCCccccCcCCCCCCCCCCcccccCCCCcchhhHHHHHHHHHHHHHHhhccCCC
Q psy11778 54 LALRKRSGRSTGLQRPRRAELVYLESSPNYCERDLSLGSLGTAGRHCNRTSRGSREAAFTYAITSAGVTYAITSACSRGN 133 (324)
Q Consensus 54 ~~~s~~~g~~~~~~~~~~~~LvYle~SPdyC~~~~~~g~~GT~GR~Cn~ts~GtREtAfv~Ai~sAgv~~~vtraCs~G~ 133 (324)
++.++..|++.++.++..+ |.| ..|+|......-.+ ++ +.+..|+||+||||||+||||+|+||+||++|+
T Consensus 22 ~m~~i~~G~~~ai~ECq~Q-F~~---~RWNCs~~~~~~~f---~~--~~~~~gtrE~Afv~Ai~sAgv~~~itraCs~G~ 92 (310)
T PF00110_consen 22 LMPSIAEGAKMAIEECQHQ-FRN---RRWNCSTVDNNPVF---GP--PILKKGTRETAFVYAISSAGVAHSITRACSRGK 92 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTT---SSS-----T-THHH---H---TT--S--HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHH-Hhc---cCCCCCCCcccccc---cc--cccccCcccceeeEhhhcCchHHHHHHHhhccc
Confidence 3444555555666777775 333 67778654322111 11 267899999999999999999999999999999
Q ss_pred CCcccCCCCCccccccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhccchhhc
Q psy11778 134 ISNCGCEIYRPRHRQRHRSGGAGSSDPASNWRHRSSGEPSSIGGAGELEPASNWKWGGCSVDIGFAMRYARQFLDSREIE 213 (324)
Q Consensus 134 l~~CgC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WgGCsdnv~~G~~~sk~Fld~~e~~ 213 (324)
|..|+|+.. ... ...++.|+||||+|||.||++||++|||+++..
T Consensus 93 l~~C~C~~~-~~~----------------------------------~~~~~~~~wggCsdni~~G~~~sr~Fld~~~~~ 137 (310)
T PF00110_consen 93 LKSCGCDRN-PRG----------------------------------SSSQNTWQWGGCSDNIKFGIKFSRRFLDAREKG 137 (310)
T ss_dssp -SS-----T-TTT----------------------------------SEEETTEEE-S----HHHHHHHHHHHHHHH--S
T ss_pred CCcCCCccc-ccc----------------------------------cccccccccCCcccccccchHHHHHHHHhhhhh
Confidence 999999987 330 112345999999999999999999999999988
Q ss_pred cchhHHHHhhhhhhhHHHHHhccccceeecCCCCCcccceecccCCCchHHHHHHHHHHhcc------------------
Q psy11778 214 GDARSLMNLHNNKAGRKMVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKYWKA------------------ 275 (324)
Q Consensus 214 ~~~~~~mnlHNn~aGR~av~~~~~~~CkCHG~SGSC~~ktCw~~l~~f~~vg~~Lk~ky~~A------------------ 275 (324)
.+++++||+|||+|||+||.++|+.+||||||||||++||||++||+|++||+.||+||++|
T Consensus 138 ~~~~~~mn~HNn~aGR~~v~~~~~~~CkCHGvSGSC~~ktCw~~l~~f~~Ig~~Lk~kY~~A~~v~~~~~~~~~~~~~~~ 217 (310)
T PF00110_consen 138 SDARSLMNLHNNEAGRKAVKKNMKKKCKCHGVSGSCTVKTCWRSLPPFREIGDYLKEKYDSAVKVKPNNNGNRSKPSPRK 217 (310)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT-EEEEEE-SGGG-TTSEEEEEE---HHHHHHHHHHHHHT-EE----------------
T ss_pred hhhhhhhhhhhhhhhhhhhcccccceEccccccCCCcceEEEEcCCcHHHHHHHHHHHhhcccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------------------CCCCCccccccCCCeeeEEEEEEEeecceEEeeeEEEC
Q psy11778 276 ------------------------------------------RGMDGCDLMCCGRGYNTHQISRAWQCRCKFNWCCSVQC 313 (324)
Q Consensus 276 ------------------------------------------~g~~~C~~lCCGrG~~t~~~~~~~~C~CkF~WCC~V~C 313 (324)
.++++|+.|||||||+|++++++++|||||+|||+|+|
T Consensus 218 ~~~~~~~~~~~LvY~~~SPdyC~~d~~~G~~GT~GR~C~~~~~~~~~C~~LCCGrGy~t~~~~~~~~CnCkF~WCC~V~C 297 (310)
T PF00110_consen 218 NKRFKPPTSTDLVYLEKSPDYCEPDPSTGSLGTRGRECNKTSSGPDSCDNLCCGRGYRTRTEEVEEKCNCKFHWCCEVKC 297 (310)
T ss_dssp -HHHHTS-SSS-EE-S----TTSEETTTTEE-STT-EE----THHTHHHHHTGT-EEEEEEEEEEEE-S-B--SSS--B-
T ss_pred ccccCCCCCceEEEECCCCcceeeccccccCcccccccCCCCCCCCCCceeEcCCccceEEEEEEeeECCEEEeeeEEEC
Confidence 34589999999999999999999999999999999999
Q ss_pred cccceEEEEEC
Q psy11778 314 DTCAESVEVYT 324 (324)
Q Consensus 314 ~~C~~~~~~~~ 324 (324)
++|++++++|+
T Consensus 298 ~~C~~~~~~~~ 308 (310)
T PF00110_consen 298 DTCKKTVTVYT 308 (310)
T ss_dssp -EEEEEEEEEE
T ss_pred CcCcEEEEEEE
Confidence 99999999985
No 4
>KOG3913|consensus
Probab=99.92 E-value=1.2e-25 Score=217.10 Aligned_cols=97 Identities=37% Similarity=0.637 Sum_probs=83.9
Q ss_pred eeccccccccccC--------CCCCChHHHHHHHhhhhhhcccccccCCCCchhhhhhhccCCCCCCCCCCCCceEEeec
Q psy11778 8 VTRPCLDCWGVSA--------ITLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLTLALRKRSGRSTGLQRPRRAELVYLES 79 (324)
Q Consensus 8 ~~~~c~~c~g~s~--------~~Lp~Fr~vG~~LK~kYd~A~~V~~s~~~~~~~~~~s~~~g~~~~~~~~~~~~LvYle~ 79 (324)
.++.| ||||||| ++||+||+||++||+|||+|++|.+++.+.. ...........+++|+..||||+|+
T Consensus 205 m~~~C-KCHGvSGSC~~KTCW~~lp~Fr~vG~~Lk~KYd~A~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~dLVYle~ 280 (356)
T KOG3913|consen 205 MRREC-KCHGVSGSCTVKTCWKQLPDFREVGDYLKEKYDGAIKVTVNNRGRR---SAPALRPEKPRFKPPTETDLVYLED 280 (356)
T ss_pred hhhcc-cccCccccchhhhHHhhCccHHHHHHHHHHHhhhheEEeeccCCcc---ccccccccccccCCCCCCceEEecC
Confidence 47899 9999999 9999999999999999999999988776642 1111233455668889999999999
Q ss_pred CCCccccCcCCCCCCCCCCcccccCCCCc
Q psy11778 80 SPNYCERDLSLGSLGTAGRHCNRTSRGSR 108 (324)
Q Consensus 80 SPdyC~~~~~~g~~GT~GR~Cn~ts~GtR 108 (324)
|||||++|+.+|++||.||+||.++.|.+
T Consensus 281 SPdfC~~~~~~Gs~GT~GR~Cn~ts~g~d 309 (356)
T KOG3913|consen 281 SPDYCERNKKTGSLGTQGRECNKTSRGSD 309 (356)
T ss_pred CChhhccCccCCCCCCCCcccCCCCCCCC
Confidence 99999999999999999999999999877
No 5
>smart00097 WNT1 found in Wnt-1.
Probab=99.87 E-value=5.6e-23 Score=197.26 Aligned_cols=95 Identities=35% Similarity=0.658 Sum_probs=78.4
Q ss_pred eeccccccccccC--------CCCCChHHHHHHHhhhhhhcccccccCCCCchhhhhhhccCCCCCCCCCCCCceEEeec
Q psy11778 8 VTRPCLDCWGVSA--------ITLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLTLALRKRSGRSTGLQRPRRAELVYLES 79 (324)
Q Consensus 8 ~~~~c~~c~g~s~--------~~Lp~Fr~vG~~LK~kYd~A~~V~~s~~~~~~~~~~s~~~g~~~~~~~~~~~~LvYle~ 79 (324)
.++.| ||||||| ++||+||+||+.||+||+.|++|.+++......+. .....+++|+..||||+|+
T Consensus 156 ~~~~C-kCHGvSGSC~~kTCw~~l~~Fr~Ig~~Lk~kY~~A~~V~~~~~~~~~~l~-----~~~~~~~~~~~~dLVYle~ 229 (305)
T smart00097 156 MKREC-KCHGVSGSCTVKTCWLQLPDFRKVGDYLKEKYDGASEVEVDKRGTNKAPV-----PKNSTFKPPTETDLVYLES 229 (305)
T ss_pred HHHhc-cccCccCCccccchHhhCCCHHHHHHHHHHHhccceEeeecccccccccc-----cCCccCCCCCCCCeEEeCC
Confidence 46789 9999999 89999999999999999999998765543321111 1223446778899999999
Q ss_pred CCCccccCcCCCCCCCCCCcccccCCCCc
Q psy11778 80 SPNYCERDLSLGSLGTAGRHCNRTSRGSR 108 (324)
Q Consensus 80 SPdyC~~~~~~g~~GT~GR~Cn~ts~GtR 108 (324)
|||||++|+..|++||+||+||.++.+..
T Consensus 230 SPdyC~~n~~~G~~GT~GR~Cn~~s~~~~ 258 (305)
T smart00097 230 SPDFCEKNPKTGSLGTQGRQCNKTSKGLD 258 (305)
T ss_pred CCcccccCCCcCCCCCCCCccCCCCCCCC
Confidence 99999999999999999999999987754
No 6
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=99.82 E-value=1.1e-21 Score=188.92 Aligned_cols=94 Identities=38% Similarity=0.634 Sum_probs=52.7
Q ss_pred eeccccccccccC--------CCCCChHHHHHHHhhhhhhcccccccCCCCchhhhhhhccCCCCCCCCCCCCceEEeec
Q psy11778 8 VTRPCLDCWGVSA--------ITLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLTLALRKRSGRSTGLQRPRRAELVYLES 79 (324)
Q Consensus 8 ~~~~c~~c~g~s~--------~~Lp~Fr~vG~~LK~kYd~A~~V~~s~~~~~~~~~~s~~~g~~~~~~~~~~~~LvYle~ 79 (324)
++..| ||||||| ++||+|++||+.||+||+.|++|...+.......... ....++++...||||+|+
T Consensus 160 ~~~~C-kCHGvSGSC~~ktCw~~l~~f~~Ig~~Lk~kY~~A~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~LvY~~~ 234 (310)
T PF00110_consen 160 MKKKC-KCHGVSGSCTVKTCWRSLPPFREIGDYLKEKYDSAVKVKPNNNGNRSKPSPR----KNKRFKPPTSTDLVYLEK 234 (310)
T ss_dssp -EEEE-EE-SGGG-TTSEEEEEE---HHHHHHHHHHHHHT-EE---------------------HHHHTS-SSS-EE-S-
T ss_pred ccceE-ccccccCCCcceEEEEcCCcHHHHHHHHHHHhhccccccccccccccccccc----cccccCCCCCceEEEECC
Confidence 57889 9999999 9999999999999999999999987666543221110 111225778899999999
Q ss_pred CCCccccCcCCCCCCCCCCcccccCCC
Q psy11778 80 SPNYCERDLSLGSLGTAGRHCNRTSRG 106 (324)
Q Consensus 80 SPdyC~~~~~~g~~GT~GR~Cn~ts~G 106 (324)
|||||++|+..|++||+||+|+.++.+
T Consensus 235 SPdyC~~d~~~G~~GT~GR~C~~~~~~ 261 (310)
T PF00110_consen 235 SPDYCEPDPSTGSLGTRGRECNKTSSG 261 (310)
T ss_dssp ---TTSEETTTTEE-STT-EE----TH
T ss_pred CCcceeeccccccCcccccccCCCCCC
Confidence 999999999999999999999988763
No 7
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=26.98 E-value=12 Score=27.42 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=17.4
Q ss_pred eeccccccccccCCCC-----CChHHHHHH
Q psy11778 8 VTRPCLDCWGVSAITL-----PSPSLSSRS 32 (324)
Q Consensus 8 ~~~~c~~c~g~s~~~L-----p~Fr~vG~~ 32 (324)
+..-|..||++.|... |++..++..
T Consensus 8 ~~~~C~~CH~~~~~~~~~~~~p~l~~~~~~ 37 (91)
T PF00034_consen 8 FQANCAACHGADGNGDGGGPGPDLTGIGKR 37 (91)
T ss_dssp HHHHTTTTHBTSTTSSSSSTSHBHTTHTHH
T ss_pred HhCcChhcCCCCCcCCccccCccccCcccc
Confidence 3568999999999444 566655543
No 8
>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms. The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.
Probab=22.72 E-value=36 Score=31.72 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=22.4
Q ss_pred eeeccccccccccCCCCCChHHHHHHHhhhhhhcccc
Q psy11778 7 LVTRPCLDCWGVSAITLPSPSLSSRSLKPSSSSLQSL 43 (324)
Q Consensus 7 ~~~~~c~~c~g~s~~~Lp~Fr~vG~~LK~kYd~A~~V 43 (324)
|+.+-|-+|| .+..|.+.|+ +|...-++
T Consensus 175 L~~~KCNkCH--------Tl~SVed~lr-kYkKkGki 202 (233)
T PF10643_consen 175 LFDRKCNKCH--------TLKSVEDALR-KYKKKGKI 202 (233)
T ss_dssp HHHHHTTSSS---------SHHHHHHHH-HTTTTT-H
T ss_pred HHHhhccccc--------cHHHHHHHHH-HHHhcCCH
Confidence 5678899999 4789999998 99887654
No 9
>PHA02100 hypothetical protein
Probab=17.16 E-value=86 Score=25.67 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=27.7
Q ss_pred CCChHHHHHHHHHhccchhhccchhHHHH-hhhhhhhHHHHHhcc
Q psy11778 193 SVDIGFAMRYARQFLDSREIEGDARSLMN-LHNNKAGRKMVKTLL 236 (324)
Q Consensus 193 sdnv~~G~~~sk~Fld~~e~~~~~~~~mn-lHNn~aGR~av~~~~ 236 (324)
.||| .|..++.+-||+.|.. +...|. .--...||++|++-.
T Consensus 22 tdni-lG~~VTpQvlD~wE~e--lw~am~~~gdqkIGRnaIRevi 63 (112)
T PHA02100 22 TDNI-LGNRISEEQIDAVENE--VWEAATAAGVTGIGRQAIRSVI 63 (112)
T ss_pred ccch-hhhhcCHHHHHHHHHH--HHHHHHHcccchhhHHHHHHHH
Confidence 3566 7888899999988843 333332 225588999987643
No 10
>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type. This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).
Probab=14.34 E-value=57 Score=27.47 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=13.7
Q ss_pred ccccccccccCC---CCCChHHHH
Q psy11778 10 RPCLDCWGVSAI---TLPSPSLSS 30 (324)
Q Consensus 10 ~~c~~c~g~s~~---~Lp~Fr~vG 30 (324)
..|.+||++.|. .=|++..+|
T Consensus 12 ~~C~~CH~~~g~g~~~gP~L~~~~ 35 (133)
T TIGR02603 12 QRCYVCHRIGGEGVDVGPDLTGVG 35 (133)
T ss_pred hHHHHhCCCCCCCCccCCCccccc
Confidence 359999999983 234554443
Done!