Query psy11778
Match_columns 324
No_of_seqs 243 out of 1012
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 18:44:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 100.0 8.2E-82 2.8E-86 603.7 6.7 242 38-324 2-314 (316)
2 4f0a_B Protein WNT-8, XWNT-8; 99.9 1.4E-25 4.8E-30 214.7 1.4 98 8-107 155-261 (316)
3 2zxy_A Cytochrome C552, cytoch 42.4 10 0.00035 27.0 1.6 23 11-33 11-34 (87)
4 1ayg_A Cytochrome C-552; elect 41.9 13 0.00045 26.4 2.2 23 9-31 7-30 (80)
5 2d0s_A Cytochrome C, cytochrom 39.9 12 0.00041 26.5 1.6 24 9-32 7-31 (79)
6 2exv_A Cytochrome C-551; alpha 36.9 21 0.00073 25.1 2.6 22 10-31 10-32 (82)
7 1gks_A Cytochrome C551; haloph 33.7 9.9 0.00034 27.2 0.3 21 11-31 13-33 (78)
8 2zon_G Cytochrome C551; nitrit 32.9 11 0.00036 27.3 0.4 19 8-26 16-34 (87)
9 1a56_A C-551, ferricytochrome 29.9 21 0.00072 25.3 1.6 22 10-31 8-30 (81)
10 2oq9_A Minicollagen-5; disulfi 28.4 21 0.00071 21.0 1.0 12 278-289 14-25 (26)
11 1cch_A Cytochrome C551; electr 26.9 24 0.00083 24.8 1.4 22 10-31 10-32 (82)
12 1f1f_A Cytochrome C6; heme, pr 23.7 15 0.0005 26.3 -0.3 19 9-27 11-32 (89)
13 3cu4_A Cytochrome C family pro 22.2 28 0.00094 24.8 1.0 16 9-24 13-28 (85)
14 1h32_B Cytochrome C, SOXX; ele 21.6 32 0.0011 27.2 1.3 21 11-31 41-69 (138)
15 1kx2_A Mono-heme C-type cytoch 20.3 25 0.00086 25.2 0.4 21 9-29 11-31 (81)
16 1c53_A Cytochrome C553; electr 20.2 18 0.00062 25.6 -0.4 13 9-22 8-20 (79)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=100.00 E-value=8.2e-82 Score=603.74 Aligned_cols=242 Identities=37% Similarity=0.751 Sum_probs=206.3
Q ss_pred hhcccccccCCCCchhhhhhhccCCCCCCCCCCCCceEEeecCCCccccCcCCCCCCCCCCcccccCCCCcchhhHHHHH
Q psy11778 38 SSLQSLSLSSPKPVLTLALRKRSGRSTGLQRPRRAELVYLESSPNYCERDLSLGSLGTAGRHCNRTSRGSREAAFTYAIT 117 (324)
Q Consensus 38 d~A~~V~~s~~~~~~~~~~s~~~g~~~~~~~~~~~~LvYle~SPdyC~~~~~~g~~GT~GR~Cn~ts~GtREtAfv~Ai~ 117 (324)
|++.++.+++++.++.++.++..|+++++.+++.| |-+ ..|+|..... ..+ +. ..+..|+||+||||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~Ga~~~i~ECq~Q---Fr~-~RWNCs~~~~--~~~--~~--~~l~~g~REtAFv~Ais 71 (316)
T 4f0a_B 2 WSVNNFLMTGPKAYLTYSASVAVGAQNGIEECKYQ---FAW-ERWNCPESTL--QLA--TH--NGLRSATRETSFVHAIS 71 (316)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-SSSCCCCCTT--HHH--HC--TTCCSCCHHHHHHHHHH
T ss_pred ccHHHHHHhCCccChHHHHHHHHHHHHHHHHHHHH---hcC-CCcCCCCCcc--ccC--Cc--ccccCCCHHHHHHHHHH
Confidence 56788889999887778888888988888999887 433 5667863210 000 00 24778999999999999
Q ss_pred HHHHHHHHHhhccCCCCCcccCCCCCccccccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCCCCChH
Q psy11778 118 SAGVTYAITSACSRGNISNCGCEIYRPRHRQRHRSGGAGSSDPASNWRHRSSGEPSSIGGAGELEPASNWKWGGCSVDIG 197 (324)
Q Consensus 118 sAgv~~~vtraCs~G~l~~CgC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WgGCsdnv~ 197 (324)
||||+|+||+||++|+|..|+||.. ++ + ...+++|+||||||||.
T Consensus 72 sAgv~~avtraCs~G~l~~C~Cd~~-~~---------------------------------~-~~~~~~w~WgGCsdnv~ 116 (316)
T 4f0a_B 72 SAGVMYTLTRNCSMGDFDNCGCDDS-RN---------------------------------G-RIGGRGWVWGGCSDNAE 116 (316)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCCCCT-TT---------------------------------T-SEEETTEEECSCCCCHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCC-CC---------------------------------C-CCcccCceeCCccchhH
Confidence 9999999999999999999999876 33 0 11135799999999999
Q ss_pred HHHHHHHHhccchhhccchhHHHHhhhhhhhHHHHHhccccceeecCCCCCcccceecccCCCchHHHHHHHHHHhcc--
Q psy11778 198 FAMRYARQFLDSREIEGDARSLMNLHNNKAGRKMVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKYWKA-- 275 (324)
Q Consensus 198 ~G~~~sk~Fld~~e~~~~~~~~mnlHNn~aGR~av~~~~~~~CkCHG~SGSC~~ktCw~~l~~f~~vg~~Lk~ky~~A-- 275 (324)
||++||+.|+|++|.++|++++||||||+|||+||.++|+++||||||||||++||||++||+|++||+.||+||++|
T Consensus 117 ~G~~fsr~F~D~~e~~~d~r~lmnlHNn~aGR~~v~~~m~~~CKCHGvSGSCt~KTCW~~lp~Fr~VG~~LK~kyd~A~~ 196 (316)
T 4f0a_B 117 FGERISKLFVDGLETGQDARALMNLHNNEAGRLAVKETMKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALK 196 (316)
T ss_dssp HHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHTCEEEEEECSGGGCTTSEEEEEECCCHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHhccccccccHHHHHHhhchHHHHHHHHhcCeeeeecCCccccccceehcccCCCHHHHHHHHHHHhhhheE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred --------------------------------------------------------------CCC-----CCccccc--c
Q psy11778 276 --------------------------------------------------------------RGM-----DGCDLMC--C 286 (324)
Q Consensus 276 --------------------------------------------------------------~g~-----~~C~~lC--C 286 (324)
.|. |||++|| |
T Consensus 197 V~~~~~~~~~~~~~~~~~~~~~~~k~p~~~dLVYle~SPdfC~~n~~~Gs~GT~GR~Cn~tS~g~s~~~~dgCdlLC~~C 276 (316)
T 4f0a_B 197 LEMDKRKMRSGNSADNRGAIADAFSSVAGSELIFLEDSPDYCLKNISLGLQGTEGRECLQSGKNLSQWERRSCKRLCTDC 276 (316)
T ss_dssp CCC-------------CHHHHHHHHTSCSSSCEECSCCCCTTSEETTTTEECSTTCEECCCCTTCCHHHHTHHHHHTGGG
T ss_pred eeecccccccccccccccccccccCCCCCCCeEEeCCCCcccccCCCCCCCCCCCcccCCCCCCCcCCCCCCHHHHHHhc
Confidence 344 8999999 9
Q ss_pred CCCeeeEEEEEEEeecceEEeeeEEECcccceEEEEEC
Q psy11778 287 GRGYNTHQISRAWQCRCKFNWCCSVQCDTCAESVEVYT 324 (324)
Q Consensus 287 GrG~~t~~~~~~~~C~CkF~WCC~V~C~~C~~~~~~~~ 324 (324)
||||+|++++++|+|||||||||+|+|++|.+++++|+
T Consensus 277 GRGy~t~~~~~~erC~CkF~WCC~V~C~~C~~~~~~~~ 314 (316)
T 4f0a_B 277 GLRVEEKKTEIISSCNCKFHWCCTVKCEQCKQVVIKHF 314 (316)
T ss_dssp TCCEEEEEEEEEEECSCBCCSSSCCBCCEEEEEEEEEE
T ss_pred CCceeEEEEEEEEeeCCEEEeeeEEECCcCCeEEEEEE
Confidence 99999999999999999999999999999999999985
No 2
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=99.90 E-value=1.4e-25 Score=214.70 Aligned_cols=98 Identities=28% Similarity=0.494 Sum_probs=75.0
Q ss_pred eeccccccccccC--------CCCCChHHHHHHHhhhhhhcccccccCCCCchh-hhhhhccCCCCCCCCCCCCceEEee
Q psy11778 8 VTRPCLDCWGVSA--------ITLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLT-LALRKRSGRSTGLQRPRRAELVYLE 78 (324)
Q Consensus 8 ~~~~c~~c~g~s~--------~~Lp~Fr~vG~~LK~kYd~A~~V~~s~~~~~~~-~~~s~~~g~~~~~~~~~~~~LvYle 78 (324)
.++.| ||||||| ++||+||+||++||+|||+|++|.+.+...... .+.... .....+++|...||||+|
T Consensus 155 m~~~C-KCHGvSGSCt~KTCW~~lp~Fr~VG~~LK~kyd~A~~V~~~~~~~~~~~~~~~~~-~~~~~~k~p~~~dLVYle 232 (316)
T 4f0a_B 155 MKRTC-KCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKLEMDKRKMRSGNSADNRG-AIADAFSSVAGSELIFLE 232 (316)
T ss_dssp CEEEE-EECSGGGCTTSEEEEEECCCHHHHHHHHHHHHHTCEECCC-------------CH-HHHHHHHTSCSSSCEECS
T ss_pred Ceeee-ecCCccccccceehcccCCCHHHHHHHHHHHhhhheEeeeccccccccccccccc-ccccccCCCCCCCeEEeC
Confidence 56789 9999999 999999999999999999999998765321000 000000 001123678889999999
Q ss_pred cCCCccccCcCCCCCCCCCCcccccCCCC
Q psy11778 79 SSPNYCERDLSLGSLGTAGRHCNRTSRGS 107 (324)
Q Consensus 79 ~SPdyC~~~~~~g~~GT~GR~Cn~ts~Gt 107 (324)
+|||||++|+.+|++||+||+||.++.|.
T Consensus 233 ~SPdfC~~n~~~Gs~GT~GR~Cn~tS~g~ 261 (316)
T 4f0a_B 233 DSPDYCLKNISLGLQGTEGRECLQSGKNL 261 (316)
T ss_dssp CCCCTTSEETTTTEECSTTCEECCCCTTC
T ss_pred CCCcccccCCCCCCCCCCCcccCCCCCCC
Confidence 99999999999999999999999999875
No 3
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=42.40 E-value=10 Score=26.97 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=17.4
Q ss_pred cccccccccCCC-CCChHHHHHHH
Q psy11778 11 PCLDCWGVSAIT-LPSPSLSSRSL 33 (324)
Q Consensus 11 ~c~~c~g~s~~~-Lp~Fr~vG~~L 33 (324)
.|..|||+.|.. -|+|..++...
T Consensus 11 ~C~~CHg~~g~g~gp~l~~l~~~~ 34 (87)
T 2zxy_A 11 GCGSCHQANVDTVGPSLKKIAQAY 34 (87)
T ss_dssp TGGGTCCSSSCSSSCCHHHHHHHT
T ss_pred CchhhcCCCCCCCCCChHHHHHHh
Confidence 699999999954 47787776543
No 4
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=41.90 E-value=13 Score=26.42 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=16.8
Q ss_pred eccccccccccCC-CCCChHHHHH
Q psy11778 9 TRPCLDCWGVSAI-TLPSPSLSSR 31 (324)
Q Consensus 9 ~~~c~~c~g~s~~-~Lp~Fr~vG~ 31 (324)
...|..|||+.|. .-|+|..++.
T Consensus 7 ~~~C~~CHg~~g~g~gP~l~~~~~ 30 (80)
T 1ayg_A 7 QKGCMACHDLKAKKVGPAYADVAK 30 (80)
T ss_dssp SSSSGGGCCSSCCSSSCCHHHHHH
T ss_pred hCCchhhcCCCCCCCCCChHHHHH
Confidence 3579999999983 3477776654
No 5
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=39.91 E-value=12 Score=26.52 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=17.3
Q ss_pred eccccccccccCC-CCCChHHHHHH
Q psy11778 9 TRPCLDCWGVSAI-TLPSPSLSSRS 32 (324)
Q Consensus 9 ~~~c~~c~g~s~~-~Lp~Fr~vG~~ 32 (324)
...|..|||+.|. .-|+|..++..
T Consensus 7 ~~~C~~CHg~~g~~~gP~l~~~~~~ 31 (79)
T 2d0s_A 7 AKGCMACHAIDKKLVGPSYKDVAKK 31 (79)
T ss_dssp HTTGGGTCCSSSCSSSCCHHHHHHH
T ss_pred cCCChhhcCCCCCCCCCCHHHHHHH
Confidence 3579999999983 34778766543
No 6
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=36.93 E-value=21 Score=25.14 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=16.9
Q ss_pred ccccccccccCCC-CCChHHHHH
Q psy11778 10 RPCLDCWGVSAIT-LPSPSLSSR 31 (324)
Q Consensus 10 ~~c~~c~g~s~~~-Lp~Fr~vG~ 31 (324)
..|..|||+.|.. -|+|..++.
T Consensus 10 ~~C~~CHg~~g~g~gp~l~~~~~ 32 (82)
T 2exv_A 10 KGCVACHAIDTKMVGPAYKDVAA 32 (82)
T ss_dssp TTGGGTCCSSSCCSSCCHHHHHH
T ss_pred CCchhhcCCCCCCCCcCHHHHHH
Confidence 5699999999854 477887764
No 7
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=33.73 E-value=9.9 Score=27.23 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=17.2
Q ss_pred cccccccccCCCCCChHHHHH
Q psy11778 11 PCLDCWGVSAITLPSPSLSSR 31 (324)
Q Consensus 11 ~c~~c~g~s~~~Lp~Fr~vG~ 31 (324)
.|..|||..|...|+|..++.
T Consensus 13 ~C~~CHg~~g~g~P~l~~~~~ 33 (78)
T 1gks_A 13 TCSSCHDRGVAGAPELNAPED 33 (78)
T ss_dssp CSHHHHTTTGGGCCCTTCHHH
T ss_pred chhhhCCCCCCCCCCCCCHHH
Confidence 799999999977788876544
No 8
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=32.94 E-value=11 Score=27.30 Aligned_cols=19 Identities=16% Similarity=0.419 Sum_probs=13.3
Q ss_pred eeccccccccccCCCCCCh
Q psy11778 8 VTRPCLDCWGVSAITLPSP 26 (324)
Q Consensus 8 ~~~~c~~c~g~s~~~Lp~F 26 (324)
....|..|||+.|...|.|
T Consensus 16 ~~~~C~~CHg~~~~g~~~~ 34 (87)
T 2zon_G 16 YRSACVVCHASGVANAPKL 34 (87)
T ss_dssp HHHTTHHHHTTTGGGCCCT
T ss_pred HHHHhHHHcCCCCCCCCCC
Confidence 3467999999987444443
No 9
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=29.86 E-value=21 Score=25.30 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=16.5
Q ss_pred ccccccccccCC-CCCChHHHHH
Q psy11778 10 RPCLDCWGVSAI-TLPSPSLSSR 31 (324)
Q Consensus 10 ~~c~~c~g~s~~-~Lp~Fr~vG~ 31 (324)
..|..|||+.|. .-|+|..++.
T Consensus 8 ~~C~~CHg~~g~~~gp~l~~~~~ 30 (81)
T 1a56_A 8 NNCIACHQVETKVVGPALKDIAA 30 (81)
T ss_dssp HSHHHHBCSSCBSSSCCHHHHHH
T ss_pred cCchhhCCCCCCcCCcCHHHHHH
Confidence 579999999984 3477876654
No 10
>2oq9_A Minicollagen-5; disulfide, CIS-proline, nematocyst, non-canonical CRD, cysteine-rich domain, structural protein; NMR {Synthetic}
Probab=28.35 E-value=21 Score=20.96 Aligned_cols=12 Identities=50% Similarity=1.270 Sum_probs=9.8
Q ss_pred CCCccccccCCC
Q psy11778 278 MDGCDLMCCGRG 289 (324)
Q Consensus 278 ~~~C~~lCCGrG 289 (324)
+.+|..-||||.
T Consensus 14 mascapqccgr~ 25 (26)
T 2oq9_A 14 MASCAPQCCGRX 25 (26)
T ss_dssp CTTTTTTTTCC-
T ss_pred HHhccHHhhcCC
Confidence 578999999985
No 11
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=26.91 E-value=24 Score=24.77 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=16.2
Q ss_pred ccccccccccCC-CCCChHHHHH
Q psy11778 10 RPCLDCWGVSAI-TLPSPSLSSR 31 (324)
Q Consensus 10 ~~c~~c~g~s~~-~Lp~Fr~vG~ 31 (324)
..|..|||+.|. .-|++..++.
T Consensus 10 ~~C~~CHg~~g~g~gP~l~~~~~ 32 (82)
T 1cch_A 10 KPCAACHSVDTKMVGPALKEVAA 32 (82)
T ss_dssp STHHHHSCSSSCSSSCCHHHHHH
T ss_pred CCChhhcCCCCCCCCcChHHHHH
Confidence 369999999984 3477776654
No 12
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=23.69 E-value=15 Score=26.34 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=13.8
Q ss_pred eccccccccccCCC---CCChH
Q psy11778 9 TRPCLDCWGVSAIT---LPSPS 27 (324)
Q Consensus 9 ~~~c~~c~g~s~~~---Lp~Fr 27 (324)
...|..|||+.|.. .|++.
T Consensus 11 ~~~C~~CHg~~g~g~~~~P~L~ 32 (89)
T 1f1f_A 11 SANCAACHMGGRNVIVANKTLS 32 (89)
T ss_dssp HHHTHHHHGGGCCSSSTTCCSS
T ss_pred HHHhHHhCCCCCCCCcCCCCCC
Confidence 45699999999843 46663
No 13
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=22.22 E-value=28 Score=24.83 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=12.2
Q ss_pred eccccccccccCCCCC
Q psy11778 9 TRPCLDCWGVSAITLP 24 (324)
Q Consensus 9 ~~~c~~c~g~s~~~Lp 24 (324)
...|..|||+.|...+
T Consensus 13 ~~~Ca~CHg~~g~g~~ 28 (85)
T 3cu4_A 13 ATHCAGCHPQGGNTVH 28 (85)
T ss_dssp HHHTTTTSGGGCCSSS
T ss_pred HHHhHHhCCCCCCCCC
Confidence 4569999999885544
No 14
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=21.62 E-value=32 Score=27.17 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=16.1
Q ss_pred cccccccccC--------CCCCChHHHHH
Q psy11778 11 PCLDCWGVSA--------ITLPSPSLSSR 31 (324)
Q Consensus 11 ~c~~c~g~s~--------~~Lp~Fr~vG~ 31 (324)
.|..|||+.| ..-|++..++.
T Consensus 41 ~C~~CH~~~g~~~~~~~~~~gP~L~~~~~ 69 (138)
T 1h32_B 41 NCIACHEVTEMADAQFPGTVGPSLDGVAA 69 (138)
T ss_dssp CGGGTCCCTTC---CCCCSSSCCCTTHHH
T ss_pred ChhhccCCCCcCccccCCcCCCChhHhcc
Confidence 7999999986 34588877764
No 15
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=20.32 E-value=25 Score=25.17 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=15.3
Q ss_pred eccccccccccCCCCCChHHH
Q psy11778 9 TRPCLDCWGVSAITLPSPSLS 29 (324)
Q Consensus 9 ~~~c~~c~g~s~~~Lp~Fr~v 29 (324)
...|..|||..|...|.|..+
T Consensus 11 ~~~Ca~CHg~~~~g~p~~~~~ 31 (81)
T 1kx2_A 11 NKACTVCHSMGVAGAPKSHNT 31 (81)
T ss_dssp HHSTTSSTTTTGGGCCCTTCS
T ss_pred HHHHHHHcCCCCCCCCCCCCh
Confidence 457999999877666766544
No 16
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=20.21 E-value=18 Score=25.64 Aligned_cols=13 Identities=23% Similarity=0.769 Sum_probs=10.2
Q ss_pred eccccccccccCCC
Q psy11778 9 TRPCLDCWGVSAIT 22 (324)
Q Consensus 9 ~~~c~~c~g~s~~~ 22 (324)
.. |..|||+.|..
T Consensus 8 ~~-Ca~CHg~~g~g 20 (79)
T 1c53_A 8 KS-CVGCHGADGSK 20 (79)
T ss_pred HH-HHhccCCCCCC
Confidence 44 99999998843
Done!