Query psy11778
Match_columns 324
No_of_seqs 243 out of 1012
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 18:44:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11778.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11778hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tv0a_ g.9.1.1 (A:) Defensin- 66.5 0.26 1.9E-05 28.9 -1.5 28 283-310 2-30 (32)
2 d351ca_ a.3.1.1 (A:) Cytochrom 49.7 3.2 0.00023 28.7 1.7 26 8-33 7-34 (82)
3 d1gl1i_ g.4.1.1 (I:) Protease 48.3 2.3 0.00017 25.3 0.5 17 238-254 14-32 (34)
4 d1a56a_ a.3.1.1 (A:) Cytochrom 41.7 4.5 0.00033 27.8 1.4 23 10-32 8-31 (81)
5 d1ynra1 a.3.1.1 (A:1-80) Cytoc 36.6 9.6 0.0007 26.0 2.5 23 9-31 7-30 (80)
6 d1fcdc2 a.3.1.4 (C:81-174) Fla 30.3 3.3 0.00024 29.3 -1.1 16 9-24 18-33 (94)
7 d1pbya1 a.3.1.7 (A:1-85) Quino 26.7 10 0.00076 27.0 1.2 12 7-18 6-17 (85)
8 d2cora2 g.39.1.3 (A:8-42) Pinc 24.9 13 0.00093 22.4 1.1 16 5-20 4-19 (35)
9 d1fcdc1 a.3.1.4 (C:1-80) Flavo 23.6 9.4 0.00069 25.9 0.4 13 9-21 8-20 (80)
10 d1cora_ a.3.1.1 (A:) Cytochrom 22.4 15 0.0011 24.8 1.4 21 11-31 11-32 (82)
No 1
>d1tv0a_ g.9.1.1 (A:) Defensin-related cryptdin 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=66.46 E-value=0.26 Score=28.93 Aligned_cols=28 Identities=29% Similarity=0.808 Sum_probs=22.1
Q ss_pred ccc-cCCCeeeEEEEEEEeecceEEeeeE
Q psy11778 283 LMC-CGRGYNTHQISRAWQCRCKFNWCCS 310 (324)
Q Consensus 283 ~lC-CGrG~~t~~~~~~~~C~CkF~WCC~ 310 (324)
+|| |-.||-.+-+.+.-.|.=+|.+||+
T Consensus 2 llcycrkghckrgervrgtcgirflyccp 30 (32)
T d1tv0a_ 2 LLCYCRKGHCKRGERVRGTCGIRFLYCCP 30 (32)
T ss_dssp CCCEEEESCCSSCEECSSCSSSSEEEECC
T ss_pred eeEEEccCcccCCcEeeeecceeEEEEcC
Confidence 466 6667766667777899999999996
No 2
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=49.65 E-value=3.2 Score=28.65 Aligned_cols=26 Identities=12% Similarity=0.395 Sum_probs=19.1
Q ss_pred eecc-ccccccccCCCC-CChHHHHHHH
Q psy11778 8 VTRP-CLDCWGVSAITL-PSPSLSSRSL 33 (324)
Q Consensus 8 ~~~~-c~~c~g~s~~~L-p~Fr~vG~~L 33 (324)
++.. |..|||+.|..+ |+|..|+..-
T Consensus 7 f~~~gC~~CH~~~g~~~gP~~~~i~~~~ 34 (82)
T d351ca_ 7 FKNKGCVACHAIDTKMVGPAYKDVAAKF 34 (82)
T ss_dssp HHHTTGGGTBCSSSBSSSCCHHHHHHHH
T ss_pred HhhCCchhhcCCcccCCCCcchhHHHhc
Confidence 3444 999999999554 7788887543
No 3
>d1gl1i_ g.4.1.1 (I:) Protease inhibitor PMP-C {Migratory locust (Locusta migratoria) [TaxId: 7004]}
Probab=48.33 E-value=2.3 Score=25.34 Aligned_cols=17 Identities=47% Similarity=1.318 Sum_probs=14.6
Q ss_pred cceee--cCCCCCccccee
Q psy11778 238 TECKC--HGVSGSCTMKTC 254 (324)
Q Consensus 238 ~~CkC--HG~SGSC~~ktC 254 (324)
..|+| .|-|++|+.|.|
T Consensus 14 ntcrc~s~gksaactlkac 32 (34)
T d1gl1i_ 14 NTCRCGADGKSAACTLKAC 32 (34)
T ss_dssp SEEEECTTSSCEEEECCCC
T ss_pred ceeeecCCCcccceeeccC
Confidence 46888 799999999987
No 4
>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]}
Probab=41.74 E-value=4.5 Score=27.79 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=17.6
Q ss_pred ccccccccccCCC-CCChHHHHHH
Q psy11778 10 RPCLDCWGVSAIT-LPSPSLSSRS 32 (324)
Q Consensus 10 ~~c~~c~g~s~~~-Lp~Fr~vG~~ 32 (324)
--|..|||+.|+. -|+|..|+..
T Consensus 8 ~~C~~CH~~~~~g~gP~~~~i~~~ 31 (81)
T d1a56a_ 8 NNCIACHQVETKVVGPALKDIAAK 31 (81)
T ss_dssp HSHHHHBCSSCBSSSCCHHHHHHH
T ss_pred CCcHhhCCCcCcCccccccchhhh
Confidence 3699999999954 5888877653
No 5
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
Probab=36.62 E-value=9.6 Score=25.95 Aligned_cols=23 Identities=17% Similarity=0.515 Sum_probs=17.1
Q ss_pred eccccccccccCCCC-CChHHHHH
Q psy11778 9 TRPCLDCWGVSAITL-PSPSLSSR 31 (324)
Q Consensus 9 ~~~c~~c~g~s~~~L-p~Fr~vG~ 31 (324)
..-|..|||+.|... |+|..++.
T Consensus 7 ~~~C~~CH~~~~~g~gP~~~~l~~ 30 (80)
T d1ynra1 7 QKGCMACHDLKAKKVGPAYADVAK 30 (80)
T ss_dssp HHTGGGTCCSSSCSSSCCHHHHHH
T ss_pred cCCcHhhCCCCCCCCCCCccchhh
Confidence 346999999999554 78876654
No 6
>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=30.32 E-value=3.3 Score=29.30 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=12.0
Q ss_pred eccccccccccCCCCC
Q psy11778 9 TRPCLDCWGVSAITLP 24 (324)
Q Consensus 9 ~~~c~~c~g~s~~~Lp 24 (324)
...|..|||+.|...+
T Consensus 18 ~~~Ca~CHg~~G~g~~ 33 (94)
T d1fcdc2 18 DKYCEKCHVEGGKPLA 33 (94)
T ss_dssp HHHTTTTSHHHHCCCC
T ss_pred HHHhHHhcCcCCCCCC
Confidence 4569999999885443
No 7
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=26.71 E-value=10 Score=27.00 Aligned_cols=12 Identities=17% Similarity=0.559 Sum_probs=10.2
Q ss_pred eeeccccccccc
Q psy11778 7 LVTRPCLDCWGV 18 (324)
Q Consensus 7 ~~~~~c~~c~g~ 18 (324)
||...|..||+.
T Consensus 6 lv~~~C~~CHs~ 17 (85)
T d1pbya1 6 VLQNACAACHVQ 17 (85)
T ss_dssp HHHHTGGGTSCB
T ss_pred HHHHHHHHhCCc
Confidence 688899999973
No 8
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.88 E-value=13 Score=22.38 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=11.9
Q ss_pred CeeeeccccccccccC
Q psy11778 5 PILVTRPCLDCWGVSA 20 (324)
Q Consensus 5 ~~~~~~~c~~c~g~s~ 20 (324)
-.|-+-.|.|||+|--
T Consensus 4 ~glGk~vC~KCh~iId 19 (35)
T d2cora2 4 RGLGKYICQKCHAIID 19 (35)
T ss_dssp CCCCCCBCTTTCCBCC
T ss_pred cchhhHHHHHHHhhhh
Confidence 3466788999998654
No 9
>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=23.62 E-value=9.4 Score=25.88 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=10.4
Q ss_pred eccccccccccCC
Q psy11778 9 TRPCLDCWGVSAI 21 (324)
Q Consensus 9 ~~~c~~c~g~s~~ 21 (324)
...|..|||+.|.
T Consensus 8 ~~~Ca~CHG~~G~ 20 (80)
T d1fcdc1 8 TNNCAGCHGTHGN 20 (80)
T ss_dssp HHTTTTTSCGGGC
T ss_pred HHHHHHhCcCccc
Confidence 3569999999883
No 10
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}
Probab=22.38 E-value=15 Score=24.75 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=15.6
Q ss_pred cccccccccCCC-CCChHHHHH
Q psy11778 11 PCLDCWGVSAIT-LPSPSLSSR 31 (324)
Q Consensus 11 ~c~~c~g~s~~~-Lp~Fr~vG~ 31 (324)
.|..|||+.|.. -|+|..++.
T Consensus 11 ~C~~CH~~~~~g~gp~~~~l~~ 32 (82)
T d1cora_ 11 PCAACHSIDAKLVGPAFKEVAA 32 (82)
T ss_dssp THHHHCCSSSCSSSCCHHHHHH
T ss_pred ccHHHhCCcccCcCCcchhhhh
Confidence 599999998844 477776653
Done!