RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11778
(324 letters)
>gnl|CDD|215724 pfam00110, wnt, wnt family. Wnt genes have been identified in
vertebrates and invertebrates but not in plants,
unicellular eukaryotes or prokaryotes. In humans, 19 WNT
proteins are known. Because of their insolubility little
is known about Wnt protein structure, but all have 23 or
24 Cys residues whose spacing is highly conserved.
Signal transduction by Wnt proteins (including the
Wnt/beta-catenin, the Wnt/Ca++, and the Wnt/polarity
pathway) is mediated by receptors of the Frizzled and
LDL-receptor-related protein (LRP) families.
Length = 308
Score = 215 bits (551), Expect = 1e-68
Identities = 84/172 (48%), Positives = 108/172 (62%), Gaps = 35/172 (20%)
Query: 104 SRGSREAAFTYAITSAGVTYAITSACSRGNISNCGCEIYRPRHRQRHRSGGAGSSDPASN 163
RG+RE AF YAI+SAGV +A+T ACS GN+ +CGC+ R R G +G
Sbjct: 62 KRGTRETAFVYAISSAGVVHAVTRACSEGNLESCGCD--------RSRRGRSGPGG---- 109
Query: 164 WRHRSSGEPSSIGGAGELEPASNWKWGGCSVDIGFAMRYARQFLDSREIEGDARSLMNLH 223
W+WGGCS +I F +R++R+FLD+RE DAR+LMNLH
Sbjct: 110 -----------------------WEWGGCSDNIKFGIRFSREFLDARERGRDARALMNLH 146
Query: 224 NNKAGRKMVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKYWKA 275
NN+AGRK VK ++TECKCHGVSGSCT+KTCW+ LP F+ +GD L +KY A
Sbjct: 147 NNEAGRKAVKRNMKTECKCHGVSGSCTLKTCWKQLPDFREVGDLLKEKYDGA 198
Score = 95.8 bits (239), Expect = 1e-22
Identities = 31/50 (62%), Positives = 37/50 (74%)
Query: 275 ARGMDGCDLMCCGRGYNTHQISRAWQCRCKFNWCCSVQCDTCAESVEVYT 324
+ G DGCDL+CCGRGYNT + +C CKF+WCC V+C TC E VEVYT
Sbjct: 257 SSGTDGCDLLCCGRGYNTRTVVVVERCNCKFHWCCYVKCKTCRERVEVYT 306
Score = 73.0 bits (180), Expect = 1e-14
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 56 LRKRSGRSTGLQRPRRAELVYLESSPNYCERDLSLGSLGTAGRHCNRTSRGSR 108
R+ ++ + P +LVYLE SP+YCER+ SLGSLGT GR CN+TS G+
Sbjct: 209 RRRLVRKNPKSKPPTSTDLVYLEDSPDYCERNPSLGSLGTRGRECNKTSSGTD 261
>gnl|CDD|128408 smart00097, WNT1, found in Wnt-1.
Length = 305
Score = 189 bits (483), Expect = 2e-58
Identities = 78/168 (46%), Positives = 101/168 (60%), Gaps = 35/168 (20%)
Query: 105 RGSREAAFTYAITSAGVTYAITSACSRGNISNCGCEIYRPRHRQRHRSGGAGSSDPASNW 164
+G+RE AF YAI+SAGV +A+T ACS G + +CGC + G AG
Sbjct: 60 QGTRETAFVYAISSAGVAHAVTRACSEGELDSCGC--------DYRKRGRAGGRG----- 106
Query: 165 RHRSSGEPSSIGGAGELEPASNWKWGGCSVDIGFAMRYARQFLDSREIEGDARSLMNLHN 224
WKWGGCS +I F +R++R+F+D+RE DAR+LMNLHN
Sbjct: 107 ----------------------WKWGGCSDNIDFGIRFSREFVDARERGKDARALMNLHN 144
Query: 225 NKAGRKMVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKY 272
N+AGR VK ++ ECKCHGVSGSCT+KTCW LP F+ +GD L +KY
Sbjct: 145 NEAGRLAVKKTMKRECKCHGVSGSCTVKTCWLQLPDFRKVGDYLKEKY 192
Score = 86.6 bits (215), Expect = 2e-19
Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 273 WKARGMDGCDLMCCGRGYNTHQISRAWQCRCKFNWCCSVQCDTCAESVEVYT 324
++G+DGCDL+CCGRGYNT + +C CKF+WCC V+C C E+VE +T
Sbjct: 252 KTSKGLDGCDLLCCGRGYNTRTVEVVERCNCKFHWCCYVKCKQCRETVEKHT 303
Score = 63.1 bits (154), Expect = 2e-11
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 56 LRKRSGRSTGLQRPRRAELVYLESSPNYCERDLSLGSLGTAGRHCNRTSRG 106
+ +++ + P +LVYLESSP++CE++ GSLGT GR CN+TS+G
Sbjct: 206 NKAPVPKNSTFKPPTETDLVYLESSPDFCEKNPKTGSLGTQGRQCNKTSKG 256
>gnl|CDD|176408 cd01813, UBP_N, UBP ubiquitin processing protease. The UBP
(ubiquitin processing protease) domain (also referred
to as USP which stands for "ubiquitin-specific
protease") is present at in a large family of cysteine
proteases that specifically cleave ubiquitin
conjugates. This family includes Rpn11, UBP6 (USP14),
USP7 (HAUSP). This domain is closely related to the
amino-terminal ubiquitin-like domain of BAG1
(Bcl2-associated anthanogene1) protein and is found
only in eukaryotes.
Length = 74
Score = 28.3 bits (63), Expect = 1.2
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 56 LRKRSGRSTGLQRPRRAELVYLESSPNYCERDLSLGSL 93
L++ TG+ P R +L+ L+ E D+ + +L
Sbjct: 25 LKQFIKTLTGV-LPERQKLLGLKVKGKPAEDDVKISAL 61
>gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase.
Length = 416
Score = 30.2 bits (68), Expect = 1.4
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 86 RDLSLG-SLGTAGRHCN-RTSRGSREAAFTYAITSAGVTYAITSACSRGNISNCGCEIYR 143
R++ LG SL G N + R T S +YA + SR +I C
Sbjct: 6 RNIDLGTSLVACGCSSNASSRRRVVRNGATPVCKSCSRSYASSLVTSRRDIGRCRVVSPS 65
Query: 144 PRHRQRHRSGGAGSSDPASNWRHRSSGEPSSI 175
P G G + S EP S+
Sbjct: 66 PETS---LVNGIGQGPTVALDLKAESKEPISL 94
>gnl|CDD|203376 pfam06016, Reovirus_L2, Reovirus core-spike protein lambda-2 (L2).
This family consists of several Reovirus core-spike
protein lambda-2 (L2) sequences. The reovirus L2 genome
segment encodes the core spike protein lambda-2, which
mediates enzymatic reactions in 5' capping of the viral
plus-strand transcripts.
Length = 1290
Score = 30.6 bits (69), Expect = 1.4
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 17 GVSAITLPSPSLSSRSLKPSSSSLQSL-SLSSPKPVLTLALRKRS---------GRSTGL 66
G++A+ L +P S+ + +L L S+ P ++A+ S G+ T L
Sbjct: 704 GINAVRLENPGFSNMTQAARIGALALLASVGVPS--KSIAIYVDSHGARVTTIYGKRTPL 761
Query: 67 QRPRRAELVYL 77
R R + L Y+
Sbjct: 762 SRRRLSRLRYV 772
>gnl|CDD|221438 pfam12141, DUF3589, Protein of unknown function (DUF3589). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 541 and 717 amino
acids in length. The function of this family is not
known,.
Length = 488
Score = 29.6 bits (67), Expect = 2.4
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 131 RGNISNCGC--EIYRP 144
R ++ NCGC +YRP
Sbjct: 344 RAHLKNCGCGKSMYRP 359
>gnl|CDD|147308 pfam05059, Orbi_VP4, Orbivirus VP4 core protein. Orbiviruses are
double stranded RNA retroviruses of which the bluetongue
virus is a member. The core of bluetongue virus (BTV) is
a multienzyme complex composed of two major proteins
(VP7 and VP3) and three minor proteins (VP1, VP4 and
VP6) in addition to the viral genome. VP4 has been shown
to perform all RNA capping activities and has both
methyltransferase type 1 and type 2 activities
associated with it.
Length = 642
Score = 28.9 bits (65), Expect = 3.7
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 258 LPPFKVIGDALMKKYWKARGMDGCDLMCCG----------RGYNTHQISRAWQCRCK 304
LP K+ G + W RG D+ G RG+ +S + R
Sbjct: 23 LPILKLTGIEDLNDLWLERGKYATDIYAYGPLQKWTIRQLRGHGFIFVSTKKRIRLL 79
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 29.0 bits (65), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 35 PSSSSLQSLSLSSPKPVLTLALRKRSGRSTGLQR 68
SSL S SLS+ L + + GR G++R
Sbjct: 4 RRISSLLSRSLSASSSALLRSRGRNGGRGRGIRR 37
>gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional.
Length = 478
Score = 28.8 bits (64), Expect = 4.6
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 18 VSAITLPSPSLSSRSLKPSSSSLQSLSLSS---PKPVLTLALRKRSGRSTGLQRPRRAEL 74
+ + + SPS S+ S K +S L+SL+LSS T + R + R R +
Sbjct: 16 LPSSSSSSPSSSTFSFKSTSGKLKSLTLSSSFLSPFSTTTTSTSQRRRRSFTVRAARGKF 75
Query: 75 VYLESSPNYCERDLSLGSLGTAGRHCNRTSRGSREAAFTYAITSAG 120
ER ++GT G H + + + AA T A+ S G
Sbjct: 76 ----------ERKKPHVNIGTIG-HVDH-GKTTLTAALTMALASMG 109
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 28.4 bits (63), Expect = 4.7
Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 22/232 (9%)
Query: 20 AITLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLTLALRKRSGRSTGLQRPRRAELVYL-- 77
A ++ S S S + P SSS + LS S + R+ + ++
Sbjct: 2 AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61
Query: 78 ESSPNYCERDLSLGSLGTAGRHCNRTSRGSREAAFTYAITSAGVTYAITSACSRGNISNC 137
LS G L + +R S + + G +++ S +
Sbjct: 62 FGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAA-------SLNGSLATASTSGSSSPSRSR 114
Query: 138 GCEIYRPRHRQRHRSGGAGSSDPASNWRHRSSGEPSSIGGAGELEPASN----WKWGGCS 193
SG S R PS I A +L N W++
Sbjct: 115 RTT------SSDLSSGNGPSVLSFMADVKRGKKGPSKIEDAHQLRLLYNRLLQWRFVNAR 168
Query: 194 VDIGFAMRYARQFLDSREIEGDARSLMNLHNNKAGRKMVKTLLQTECKCHGV 245
+ A ++ +++ + L N+ A +++ L+ E K + V
Sbjct: 169 AE---AAMAVQKLNAEKQLFNAWLRISELRNSVAMKRIKLQRLRQELKLNSV 217
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 28.7 bits (63), Expect = 5.7
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 19 SAITLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLTLALRKRSGRSTGLQRP 69
S+ + S S SS S +PS S+ SLS S P R RSGR RP
Sbjct: 1819 SSSSSSSSSSSSPSSRPSRSATPSLSPSPSPPRRAPVDRSRSGRRRERDRP 1869
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase.
Length = 347
Score = 28.2 bits (62), Expect = 5.8
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 22 TLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLTLALRKRSGRSTGLQRPR------RAELV 75
T P SL PS SSLQ LSL + V L S S+ R R E V
Sbjct: 3 TAPLSGFFLTSLSPSQSSLQKLSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPV 62
Query: 76 YLESSP 81
+ +P
Sbjct: 63 FAAPAP 68
>gnl|CDD|227112 COG4771, FepA, Outer membrane receptor for ferrienterochelin and
colicins [Inorganic ion transport and metabolism].
Length = 699
Score = 27.8 bits (62), Expect = 9.0
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 97 GRHCNRTSRGSREAAFTYAITSAGVTYAITSACS-RGNISN 136
N S + Y I G TY +T S + N
Sbjct: 623 NYSGNPADGASGKYLGAYTIVDLGATYDVTKNVSLNAGVYN 663
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 230
Score = 27.3 bits (60), Expect = 10.0
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 14 DCWGVSAITLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLTLALRKRSGRSTGLQRPRRAE 73
D G+ + LP +L L P S +S ++ T+++ R G +TG+ R
Sbjct: 66 DGSGIVCLCLPGETLDRLELPPMVDSNRSRYSTA----FTVSIEAREGVTTGVSAVDRVT 121
Query: 74 LVYLESSPN 82
+ +P
Sbjct: 122 TIRAAIAPG 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.131 0.428
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,380,993
Number of extensions: 1372211
Number of successful extensions: 1133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1129
Number of HSP's successfully gapped: 30
Length of query: 324
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 227
Effective length of database: 6,635,264
Effective search space: 1506204928
Effective search space used: 1506204928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)