RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11778
(324 letters)
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
frizzled, fatty acylation, glycosylation, signaling
protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
laevis}
Length = 316
Score = 118 bits (295), Expect = 5e-31
Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 35/172 (20%)
Query: 108 REAAFTYAITSAGVTYAITSACSRGNISNCGCEIYRPRHRQRHRSGGAGSSDPASNWRHR 167
RE +F +AI+SAGV Y +T CS G+ NCGC+ R
Sbjct: 62 RETSFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGRI-------------------- 101
Query: 168 SSGEPSSIGGAGELEPASNWKWGGCSVDIGFAMRYARQFLDSREIEGDARSLMNLHNNKA 227
W WGGCS + F R ++ F+D E DAR+LMNLHNN+A
Sbjct: 102 ---------------GGRGWVWGGCSDNAEFGERISKLFVDGLETGQDARALMNLHNNEA 146
Query: 228 GRKMVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKYWKARGMD 279
GR VK ++ CKCHG+SGSC+++TCW L F+ IG+ L K+ +A ++
Sbjct: 147 GRLAVKETMKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKLE 198
Score = 54.2 bits (129), Expect = 2e-08
Identities = 22/86 (25%), Positives = 35/86 (40%)
Query: 22 TLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLTLALRKRSGRSTGLQRPRRAELVYLESSP 81
L LK L + K + R + +EL++LE SP
Sbjct: 176 QLAEFRDIGNHLKIKHDQALKLEMDKRKMRSGNSADNRGAIADAFSSVAGSELIFLEDSP 235
Query: 82 NYCERDLSLGSLGTAGRHCNRTSRGS 107
+YC +++SLG GT GR C ++ +
Sbjct: 236 DYCLKNISLGLQGTEGRECLQSGKNL 261
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.011
Identities = 37/236 (15%), Positives = 63/236 (26%), Gaps = 91/236 (38%)
Query: 12 CLDCWGVSAIT-------------LPSPSLSSRSLK---------------PSSSSLQSL 43
C + + +++ +PSP LS +L P+ + +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EI 368
Query: 44 SLS-SPKP-VLT----------LALRKRSGRSTGLQ-----RPRRAELV----------- 75
SL K V++ L LRK S Q R+ +
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 76 --YLESSPNYCERDLSLGSLGTAGRHCN------------RTSRGSREAAFTYAI----- 116
L + + +DL ++ + R GS I
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 117 -----TSAGVTYAITSACSRGNISNCGCEIYRPRHRQRHRSG----GAGSSDPASN 163
T T+ + G S G HR + +G AG+ D +
Sbjct: 489 KWETTTQFKATHILD--FGPGGASGLGVLT----HRNKDGTGVRVIVAGTLDINPD 538
Score = 35.4 bits (81), Expect = 0.026
Identities = 54/325 (16%), Positives = 94/325 (28%), Gaps = 98/325 (30%)
Query: 28 LSSRSLKPSSSSLQSLSLSSPKPVLT-LALRKRSGRSTGLQRPRRAELVYLESSPNYCER 86
L + S P L S+ +S P + LA + + G P EL +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF-TP--GELRSYLKGATGHSQ 275
Query: 87 DLSLGSLGTAGRHCNRTSRGSREAAFTYAITSAGVTYA--ITSACSRGNISNCGCEIYRP 144
L + ++ A S E+ F + +T I G
Sbjct: 276 GL-VTAVAIA-------ETDSWES-F-FVSVRKAITVLFFI------------GVR---- 309
Query: 145 RHRQRHRSGGAGSSDPA---SNWRHRSSGEPS---SIGGA--GELEP---ASNWKWGGCS 193
+ + S P+ + + + G PS SI +++ +N
Sbjct: 310 ----CYEAYPNTSLPPSILEDSLEN-NEGVPSPMLSISNLTQEQVQDYVNKTN-SHLPAG 363
Query: 194 VDIGFAMR-YARQFLDSREIEGDARSLMNLHNNKAGRKMVKTLLQT-----ECKCHGVSG 247
+ ++ A+ + + G +SL L+ K L Q+ E K
Sbjct: 364 KQVEISLVNGAKNLV----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS-- 417
Query: 248 SCTMKTCWRTLP---PF----------KVIGDALMKKY-WKARGM--------DGCDLMC 285
R LP PF + D + + A+ + DG DL
Sbjct: 418 -------NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-- 468
Query: 286 CGRGYN---THQISRAWQCRCKFNW 307
R + + +I R W
Sbjct: 469 --RVLSGSISERIVD-CIIRLPVKW 490
Score = 28.1 bits (62), Expect = 4.8
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 44/113 (38%)
Query: 160 PASNWRH---------RSSGEPSSIGGAGELEPASNWKWGGCSVD-----IGFAMRYA-- 203
P +++ + EP+ G A + EP + + +G+
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTE-GFAADDEPTT-------PAELVGKFLGYVSSLVEP 74
Query: 204 ------------------RQFLDSREIEGDARSLMNLHNNKAGRKMVKTLLQT 238
+L+ +I A L+ ++ + K L++
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT--KELIKN 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.31
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 9/30 (30%)
Query: 31 RSLKPSSSSLQ-SLSLSSPK--PVLTLALR 57
++LK LQ SL L + P LA++
Sbjct: 20 QALK----KLQASLKLYADDSAP--ALAIK 43
>3h35_A Uncharacterized protein ABO_0056; ubiquitous hydrocarbon degrading
BA structural genomics, PSI-2, protein structure
initiative; HET: MSE SRT; 2.15A {Alcanivorax
borkumensis}
Length = 185
Score = 29.7 bits (66), Expect = 0.96
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 40 LQSLSLSSPKPVLTLALRKRSGRSTGLQR----PRRAELVYLESSPNYCERDLSLG 91
L +LS S +LTL R R L R R A + + Y + G
Sbjct: 62 LAALSDGSAFALLTLYSGSRFSRGEVLYRYSNAGRAAGIQCNDFIALYLNHLFAQG 117
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein,
glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare}
SCOP: c.1.8.3 PDB: 1ghr_A
Length = 306
Score = 28.6 bits (63), Expect = 2.8
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 15 CWGVSAITLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLTLALR 57
C+G+SA LP+ S K S+ ++S+ L +P A+
Sbjct: 4 CYGMSANNLPAASTVVSMFK--SNGIKSMRLYAPNQAALQAVG 44
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel,
biosynthetic protein; 2.21A {Lactococcus lactis subsp}
SCOP: a.102.6.1 PDB: 2g02_A
Length = 409
Score = 28.6 bits (63), Expect = 2.9
Identities = 14/93 (15%), Positives = 20/93 (21%), Gaps = 10/93 (10%)
Query: 157 SSDPASNWRHRSSGEPSSIGGAGELEPASNWKWGGCSVDIGFAMRYARQFLDSREIEGDA 216
W+ + W I Y LD+ A
Sbjct: 245 ERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKA 304
Query: 217 RSLMNLHNNKAGRKMVKTLLQTE--CKCHGVSG 247
K ++ L + CHG SG
Sbjct: 305 E--------KILESAMQRKLGIDSYMICHGYSG 329
>2jhp_A VP4 core protein; viral protein, viral capping enzyme, virion PR
viral protein; HET: SAH GUN; 2.5A {Bluetongue virus 10}
PDB: 2jh8_A* 2jha_A* 2jhc_A* 2jh9_A*
Length = 644
Score = 28.9 bits (64), Expect = 3.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 258 LPPFKVIGDALMKKYWKARGMDGCDLMCCGR 288
LP +K+ GD + W G D+ G
Sbjct: 23 LPIWKLTGDESLNDLWLENGKYATDVYAYGD 53
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase,
(beta-alpha)8-TIM-barrel, B-cell epitopes, allergen,
banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3
Length = 312
Score = 28.2 bits (62), Expect = 3.3
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 15 CWGVSAITLPSPSLSSRSLKPSSSSLQSLSLSSPKPVLTLALR 57
C+G+ LP PS K S+++ + L P ALR
Sbjct: 4 CYGMLGNNLPPPSEVVSLYK--SNNIARMRLYDPNQAALQALR 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 5.6
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 14/75 (18%)
Query: 255 WRTLPPFKVIGDALMK----KYWKARGMDGCDLMCCGRGYNTHQISRAWQCRCKFN---- 306
R L P+ + AL++ K G+ G G+ + + +++ +CK +
Sbjct: 132 SR-LQPYLKLRQALLELRPAKNVLIDGVLG-----SGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 307 WCCSVQCDTCAESVE 321
W C++ +E
Sbjct: 186 WLNLKNCNSPETVLE 200
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 27.0 bits (59), Expect = 5.8
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 18 VSAITLPSPSLSSRSLKPSSSSLQSLSLSSPK-PVLTLALRKRSGRSTGLQRPRRAELVY 76
V+ I PS + + + + S S + P + S S+ RP R L+
Sbjct: 105 VTKIGFPSTTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLT 164
Query: 77 LESSP 81
S P
Sbjct: 165 ETSGP 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.428
Gapped
Lambda K H
0.267 0.0430 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,810,241
Number of extensions: 271710
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 36
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)