RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11778
         (324 letters)



>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg)
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 94

 Score = 28.4 bits (63), Expect = 0.35
 Identities = 8/50 (16%), Positives = 16/50 (32%)

Query: 226 KAGRKMVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKYWKA 275
              ++ VK LL  +    G       ++ +R          +L  K  + 
Sbjct: 19  VKTKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIER 68


>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate
           phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
          Length = 232

 Score = 28.9 bits (63), Expect = 0.78
 Identities = 14/181 (7%), Positives = 33/181 (18%), Gaps = 8/181 (4%)

Query: 118 SAGVTYAITSACSRGNISNCGCEIYRPRHRQRHRSGGAGSSDPASNWRHRSSGEPSSIGG 177
            A V   + S+ +   +      +            GA                  S   
Sbjct: 35  EANVPVILCSSKTSAEMLYLQKTLGLQGLPLIAE-NGAVIQLAEQWQEIDGFPRIISGIS 93

Query: 178 AGELEP-------ASNWKWGGCSVDIGFAMRYARQFLDSREIEGDARSLMNLHNNKAGRK 230
            GE+           ++K+          +        S+               +   +
Sbjct: 94  HGEISLVLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDE 153

Query: 231 MVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKYWKARGMDGCDLMCCGRGY 290
            +        +                    K      +   ++         +  G G 
Sbjct: 154 RMAQFTARLNELGLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGP 213

Query: 291 N 291
           N
Sbjct: 214 N 214


>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 364

 Score = 26.7 bits (58), Expect = 3.8
 Identities = 9/39 (23%), Positives = 13/39 (33%)

Query: 261 FKVIGDALMKKYWKARGMDGCDLMCCGRGYNTHQISRAW 299
           F +    + K            L+  G GYN    +R W
Sbjct: 264 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCW 302


>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg)
           {Lactococcus lactis [TaxId: 1358]}
          Length = 88

 Score = 24.9 bits (54), Expect = 6.1
 Identities = 6/50 (12%), Positives = 15/50 (30%)

Query: 226 KAGRKMVKTLLQTECKCHGVSGSCTMKTCWRTLPPFKVIGDALMKKYWKA 275
           +   K +K  L  +    G+      +  W      +   + L++     
Sbjct: 19  RKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHL 68


>d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC
           {Janthinobacterium sp. J3 [TaxId: 213804]}
          Length = 268

 Score = 25.9 bits (55), Expect = 7.4
 Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 5/80 (6%)

Query: 242 CHGVSGSCTMKTCWRTLPP-----FKVIGDALMKKYWKARGMDGCDLMCCGRGYNTHQIS 296
            HG       +  WR + P     ++VI   ++     A+           R  +    +
Sbjct: 28  IHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIKA 87

Query: 297 RAWQCRCKFNWCCSVQCDTC 316
             +  +              
Sbjct: 88  MNFDGKVSIVGNSMGGATGL 107


>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate
           aminotransferase {Thermus thermophilus [TaxId: 274]}
          Length = 348

 Score = 25.7 bits (55), Expect = 9.7
 Identities = 10/94 (10%), Positives = 28/94 (29%), Gaps = 6/94 (6%)

Query: 229 RKMVKTLLQTECKCHGVSGSCT------MKTCWRTLPPFKVIGDALMKKYWKARGMDGCD 282
           R +++   +TE +   ++GS T      +K  +       V       + +    ++   
Sbjct: 39  RGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGL 98

Query: 283 LMCCGRGYNTHQISRAWQCRCKFNWCCSVQCDTC 316
           ++                 +  +     V  +T 
Sbjct: 99  VVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETS 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.428 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,216,265
Number of extensions: 55692
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 19
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)