BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1178
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O44081|DKC1_DROME H/ACA ribonucleoprotein complex subunit 4 OS=Drosophila
melanogaster GN=Nop60B PE=1 SV=1
Length = 508
Score = 251 bits (641), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 115/144 (79%), Positives = 135/144 (93%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M+ELRR RSGIQSE DG+VT+HD+ DAM+LY+ HKDES+LRRVI+PLEGLLV HKRII+K
Sbjct: 241 MLELRRVRSGIQSERDGMVTMHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMK 300
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DS+VNAVCYGA+I LPGVLRYEDGIE+D+EIVI +TKGEA+ LA+A MTT+TMA+CDHGV
Sbjct: 301 DSSVNAVCYGAKITLPGVLRYEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGV 360
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
VAKIKRVIM+RDTYPRKWGLGPK+
Sbjct: 361 VAKIKRVIMERDTYPRKWGLGPKA 384
>sp|O60832|DKC1_HUMAN H/ACA ribonucleoprotein complex subunit 4 OS=Homo sapiens GN=DKC1
PE=1 SV=3
Length = 514
Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 102/144 (70%), Positives = 129/144 (89%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG+ SE+D +VT+HD+ DA +LYD HKDES LRRV+ PLE LL HKR+++K
Sbjct: 243 MQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMK 302
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNA+CYGA+IMLPGVLRYEDGIE+++EIV+++TKGEA+ +A+A MTT+ ++TCDHG+
Sbjct: 303 DSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGI 362
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
VAKIKRVIM+RDTYPRKWGLGPK+
Sbjct: 363 VAKIKRVIMERDTYPRKWGLGPKA 386
>sp|Q9ESX5|DKC1_MOUSE H/ACA ribonucleoprotein complex subunit 4 OS=Mus musculus GN=Dkc1
PE=1 SV=4
Length = 509
Score = 229 bits (584), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 101/144 (70%), Positives = 129/144 (89%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG+ SE+D +VT+HD+ DA +LYD HKDES LRRV+ PLE LL HKR+++K
Sbjct: 243 MQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMK 302
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNA+CYGA+IMLPG+LRYEDGIE+++EIV+++TKGEA+ +A+A MTT+ ++TCDHG+
Sbjct: 303 DSAVNAICYGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGI 362
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
VAKIKRVIM+RDTYPRKWGLGPK+
Sbjct: 363 VAKIKRVIMERDTYPRKWGLGPKA 386
>sp|P40615|DKC1_RAT H/ACA ribonucleoprotein complex subunit 4 OS=Rattus norvegicus
GN=Dkc1 PE=1 SV=4
Length = 509
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 101/144 (70%), Positives = 127/144 (88%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG+ E D +VT+HD+ DA YLYD H+DES LRRV+ PLE LL HKR+++K
Sbjct: 244 MQELRRVRSGVVGERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSHKRLVMK 303
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNA+CYGA+IMLPG+LRYEDGIE+++E+V+++TKGEAV +A+A MTT+ ++TCDHGV
Sbjct: 304 DSAVNAICYGAKIMLPGLLRYEDGIEVNQEVVVITTKGEAVCVAIALMTTAVISTCDHGV 363
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
VAKIKRVIM+RDTYPRKWGLGPK+
Sbjct: 364 VAKIKRVIMERDTYPRKWGLGPKA 387
>sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 OS=Gallus gallus GN=DKC1
PE=2 SV=1
Length = 516
Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 102/144 (70%), Positives = 125/144 (86%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSGI E D +VT+HD+ DA + YD +KD+S LRRVI PLE LL HKR+++K
Sbjct: 241 MQELRRVRSGILGEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMK 300
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNA+CYGA+IMLPGVLRYEDGIE+ +EIV+++TKGEA+ LA+A MTT+ ++TCDHGV
Sbjct: 301 DSAVNAICYGAKIMLPGVLRYEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGV 360
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
VAKIKRVIM+RDTYPRKWGLGPK+
Sbjct: 361 VAKIKRVIMERDTYPRKWGLGPKA 384
>sp|Q54T81|DKC1_DICDI Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium
discoideum GN=nola4 PE=1 SV=1
Length = 540
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 98/144 (68%), Positives = 124/144 (86%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSGI SE+ G VT+HD+KDA Y YD KDES LRRVI+PLE +L +KRI++K
Sbjct: 227 MQELRRVRSGIMSEKKGQVTMHDVKDAQYEYDNSKDESYLRRVIQPLEAILTNYKRIVVK 286
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSA+NA+CYGA++M+PG+LRYE IE +EE+V+++TKGEA+A+ +AQMTT++MATCDHGV
Sbjct: 287 DSAINAICYGAKLMIPGLLRYEQDIESNEEVVLITTKGEAIAIGIAQMTTASMATCDHGV 346
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
VA IKRVIMDRD YP +WGLGPK+
Sbjct: 347 VATIKRVIMDRDVYPVRWGLGPKA 370
>sp|O14007|CBF5_SCHPO H/ACA ribonucleoprotein complex subunit 4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cbf5 PE=3 SV=1
Length = 474
Score = 218 bits (556), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 97/144 (67%), Positives = 126/144 (87%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG SE D +VT+HD+ DA ++YD +DES LRRVIRPLE LLVG+KRI++K
Sbjct: 218 MQELRRVRSGCLSENDDIVTMHDVLDAQWIYDNTRDESYLRRVIRPLESLLVGYKRIVVK 277
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNA+CYGA++M+PG+LRYE GIE++EEIV+++TKGEA+A+ +AQM+T ++TCDHGV
Sbjct: 278 DSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLITTKGEAIAVGIAQMSTVELSTCDHGV 337
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
VAK+KR IM+RD YPR+WGLGP+S
Sbjct: 338 VAKVKRCIMERDVYPRRWGLGPQS 361
>sp|O13473|CBF5_KLULA Centromere/microtubule-binding protein CBF5 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CBF5 PE=3 SV=1
Length = 474
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 96/142 (67%), Positives = 125/142 (88%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG SE D LVTLHD+ DA ++YD +DES LR++I+PLE LLVG+KRI++K
Sbjct: 212 MQELRRVRSGALSENDNLVTLHDVMDAQWVYDNTRDESYLRKIIQPLETLLVGYKRIVVK 271
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNAVCYGA++M+PG+LRYE+GIE+ +E+V+++TKGEA+A+A+AQM+T +ATCDHGV
Sbjct: 272 DSAVNAVCYGAKLMIPGLLRYEEGIELYDEVVLITTKGEAIAVAIAQMSTVDLATCDHGV 331
Query: 121 VAKIKRVIMDRDTYPRKWGLGP 142
VAK+KR IM+RD YPR+WGLGP
Sbjct: 332 VAKVKRCIMERDLYPRRWGLGP 353
>sp|O43101|CBF5_CANAL Centromere/microtubule-binding protein CBF5 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=CBF5 PE=3 SV=1
Length = 479
Score = 211 bits (538), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 124/142 (87%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG SE D LVTLHD+ DA Y+YD +DES LR++I+PLE LLVG+KR+++K
Sbjct: 214 MQELRRVRSGAMSESDNLVTLHDVLDAQYVYDNTRDESYLRKIIQPLESLLVGYKRVVVK 273
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVN+VCYGA++M+PG+LRYE+GIE+ +E+V+++TKGEA+A+ +AQM+T + +CDHG+
Sbjct: 274 DSAVNSVCYGAKLMIPGLLRYEEGIELYDEVVLMTTKGEAIAIGIAQMSTVDLQSCDHGI 333
Query: 121 VAKIKRVIMDRDTYPRKWGLGP 142
VAK+KR IM+RDTYPR+WGLGP
Sbjct: 334 VAKVKRCIMERDTYPRRWGLGP 355
>sp|O43102|CBF5_ASPFU Centromere/microtubule-binding protein cbf5 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=cbf5 PE=2 SV=1
Length = 487
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 122/142 (85%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG E +GLVTLHD+ DA ++YD +DES LRRVI+PLE LL +KRI++K
Sbjct: 220 MQELRRVRSGAMDENNGLVTLHDVLDAQWMYDNQRDESYLRRVIQPLESLLTTYKRIVVK 279
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNAVCYGA++M+PG+LR+E GIE++EE+V+++TKGEA+A+ +AQM+T ++TCDHGV
Sbjct: 280 DSAVNAVCYGAKLMIPGLLRFEAGIEVNEEVVLMTTKGEAIAIGIAQMSTVELSTCDHGV 339
Query: 121 VAKIKRVIMDRDTYPRKWGLGP 142
VAK+KR IM+RD YPR+WGLGP
Sbjct: 340 VAKVKRCIMERDLYPRRWGLGP 361
>sp|O43100|CBF5_EMENI Centromere/microtubule-binding protein CBF5 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cbf5 PE=2 SV=1
Length = 481
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 122/142 (85%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG SE +G+VTLHD+ DA +LYD +DES LR+VI+PLE LL +KRI++K
Sbjct: 215 MQELRRVRSGAMSENEGMVTLHDVLDAQWLYDNQRDESYLRKVIKPLESLLTTYKRIVVK 274
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNAVCYGA++M+PG+LR+E GIE+ EE+V+++TKGEA+A+ +AQM+T ++TCDHGV
Sbjct: 275 DSAVNAVCYGAKLMIPGLLRFEAGIELGEEVVLMTTKGEAIAIGIAQMSTVELSTCDHGV 334
Query: 121 VAKIKRVIMDRDTYPRKWGLGP 142
VAK+KR IM+RD YPR+WGLGP
Sbjct: 335 VAKVKRCIMERDLYPRRWGLGP 356
>sp|P33322|CBF5_YEAST H/ACA ribonucleoprotein complex subunit 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CBF5 PE=1
SV=1
Length = 483
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 123/142 (86%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG SE D +VTLHD+ DA ++YD +DES LR +I+PLE LLVG+KRI++K
Sbjct: 213 MQELRRVRSGALSENDNMVTLHDVMDAQWVYDNTRDESYLRSIIQPLETLLVGYKRIVVK 272
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNAVCYGA++M+PG+LRYE+GIE+ +EIV+++TKGEA+A+A+AQM+T +A+CDHGV
Sbjct: 273 DSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDHGV 332
Query: 121 VAKIKRVIMDRDTYPRKWGLGP 142
VA +KR IM+RD YPR+WGLGP
Sbjct: 333 VASVKRCIMERDLYPRRWGLGP 354
>sp|Q9LD90|CBF5_ARATH H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana
GN=CBF5 PE=1 SV=1
Length = 565
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 124/144 (86%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSGI E + +VT+HD+ DA ++YD +DES LRRVI PLE +L +KR+++K
Sbjct: 234 MQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVK 293
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNA+CYGA++M+PG+LR+E+ I++ E+V+++TKGEA+A+ +A+MTTS MATCDHGV
Sbjct: 294 DSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGV 353
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
VAKIKRV+MDRDTYPRKWGLGP++
Sbjct: 354 VAKIKRVVMDRDTYPRKWGLGPRA 377
>sp|O17919|DKC1_CAEEL Putative H/ACA ribonucleoprotein complex subunit 4
OS=Caenorhabditis elegans GN=K01G5.5 PE=3 SV=1
Length = 445
Score = 205 bits (521), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 118/142 (83%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRRNRSGI E + +VT+HD+ DA YL D KDES +R ++RPLE LL HKR+++K
Sbjct: 231 MQELRRNRSGICDENENMVTMHDVLDAQYLLDTQKDESYMRHIVRPLEALLTQHKRVVVK 290
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DS +NA+CYGA+I++PG+LRY+D IE+ +EIVI+STKGEA+ +A+AQM TST+A+ DHGV
Sbjct: 291 DSCINAICYGAKILIPGILRYDDDIEVGKEIVIMSTKGEAICIAIAQMNTSTIASVDHGV 350
Query: 121 VAKIKRVIMDRDTYPRKWGLGP 142
VAK KRVIM+RD Y RKWGLGP
Sbjct: 351 VAKSKRVIMERDVYGRKWGLGP 372
>sp|Q60YA8|DKC1_CAEBR Putative H/ACA ribonucleoprotein complex subunit 4
OS=Caenorhabditis briggsae GN=CBG18316 PE=3 SV=1
Length = 445
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 119/142 (83%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRRNRSGI E + +VT+HD+ DA Y+ D KDES +R ++RPLE LL HKR+++K
Sbjct: 231 MQELRRNRSGICDENENMVTMHDVLDAQYMLDTQKDESYMRHIVRPLEALLTQHKRVVVK 290
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DS VNA+CYGA+I++PG+LRY+D IE+ +EIVI++TKGEA+ +A+AQM+TST+A+ DHG+
Sbjct: 291 DSCVNAICYGAKILIPGILRYDDDIEVGKEIVIMTTKGEAICIAIAQMSTSTIASVDHGI 350
Query: 121 VAKIKRVIMDRDTYPRKWGLGP 142
VAK KRVIM+RD Y RKWGLGP
Sbjct: 351 VAKSKRVIMERDVYGRKWGLGP 372
>sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=truB PE=3 SV=1
Length = 338
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR R+G SEE+ VTLHD+KDA + + E LR V+RP+E L RI ++
Sbjct: 195 MAELRRTRTGPFSEENA-VTLHDVKDAYEFWKEEGWEEPLRHVVRPMEEGLEHLPRIEIR 253
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
D+AV+A+C+GA + PG++R E GI+ + + I + KGEAVAL +A+ T M D G+
Sbjct: 254 DTAVDAICHGANLAAPGIVRVEKGIQPGDLVAIFTLKGEAVALGVAKATWKEMLHADRGI 313
Query: 121 VAKIKRVIMDRDTYPRKWGL 140
+ KRV+M+ TYP+ WGL
Sbjct: 314 MVDTKRVLMEPGTYPKAWGL 333
>sp|Q980C3|TRUB_SULSO Probable tRNA pseudouridine synthase B OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=truB
PE=3 SV=1
Length = 251
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 89/138 (64%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSGI +E LV LH++ +A+YLY KDE+ LRRV+ P+E +I+++
Sbjct: 110 MRELRRTRSGIFTESTNLVKLHELSEAIYLYKNCKDETELRRVLIPMEFATCEIPKIVIE 169
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAVNA+ YGAQ+ +PGV+ Y++ + ++ + +++ KGE VA A M + + G+
Sbjct: 170 DSAVNALAYGAQLAVPGVVAYQN-FKKNDTVAVLTLKGELVATGNALMDSEELENAKKGI 228
Query: 121 VAKIKRVIMDRDTYPRKW 138
V + RV M RD YP+ W
Sbjct: 229 VVNLSRVFMQRDIYPKAW 246
>sp|Q57612|TRUB_METJA Probable tRNA pseudouridine synthase B OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=truB PE=1 SV=1
Length = 336
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR +SG E+D V L D+ DA + + DE LRRVI+P+E L K++++K
Sbjct: 196 MQELRRTKSGCFEEKDA-VYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRHLKKVVVK 254
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+A+C+GA + + G+ + GI E +++ + KGEAVA+ A M T + D GV
Sbjct: 255 DSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKGV 314
Query: 121 VAKIKRVIMDRDTYPRKW 138
++RV MDR TYPR W
Sbjct: 315 AVDVERVYMDRGTYPRMW 332
>sp|Q8TRR5|TRUB_METAC Probable tRNA pseudouridine synthase B OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=truB PE=3 SV=1
Length = 338
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M LRR ++G +E+ LVTLH++KDA + + DES LRRVIRP+E + +IIL+
Sbjct: 193 MQALRRTKAGPFTEKT-LVTLHELKDAYVFWKEDGDESELRRVIRPMESAVSHLPKIILR 251
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+AVC GA + +PG+ + + E + + KGE VALA A+M T + G+
Sbjct: 252 DSAVDAVCSGASLAVPGITSLDSSLAEGELAALFTLKGELVALAKAEMNTEEILKASAGI 311
Query: 121 VAKIKRVIMDRDTYPRKW 138
A RV+M+ TYP+ W
Sbjct: 312 AASPIRVLMEAGTYPKGW 329
>sp|Q8PV20|TRUB_METMA Probable tRNA pseudouridine synthase B OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=truB PE=3 SV=1
Length = 338
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M LRR ++G +E+ L+TLH++KDA + + DES LRRVIRP+E + +IIL+
Sbjct: 193 MQGLRRTKAGPFTEKT-LITLHELKDAYVFWKEDGDESELRRVIRPMESAVSHLPKIILR 251
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+A+C GA + +PG+ + + E + + KGE VALA A+MTT + G+
Sbjct: 252 DSAVDAICSGASLAVPGITGLDSNLAEGELTGLFTLKGELVALAKAKMTTEEILKASAGI 311
Query: 121 VAKIKRVIMDRDTYPRKW 138
A RV+M+ TYPR W
Sbjct: 312 AASPIRVLMEAGTYPRGW 329
>sp|Q46GC3|TRUB_METBF Probable tRNA pseudouridine synthase B OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=truB PE=3 SV=1
Length = 338
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR ++G +EE LVTL D+KDA L+ + DES +RRVI P+E + +IIL+
Sbjct: 193 MQELRRTKAGPFTEET-LVTLQDLKDAYVLWKEDGDESEIRRVIMPMETAVSHLPKIILR 251
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+A+C GA + +PG+ + ++ E I + + KGE VALA A+M+T + G+
Sbjct: 252 DSAVDAICSGAALAVPGITSLDANLKKGELIALFTLKGELVALAKAEMSTEELLKASTGL 311
Query: 121 VAKIKRVIMDRDTYPRKW 138
A R++M+ TYP+ W
Sbjct: 312 AATSVRIMMEIGTYPKGW 329
>sp|Q975L5|TRUB_SULTO Probable tRNA pseudouridine synthase B OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=truB
PE=3 SV=2
Length = 337
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 90/138 (65%), Gaps = 2/138 (1%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSGI +E++ LVTL +I +A+Y++ KDES LR+++ P+E G +I++
Sbjct: 198 MRELRRIRSGIFTEKN-LVTLQEISEALYMWKNCKDESDLRKILLPMEYATCGMPKILID 256
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
D+AV+A+ YGA + PG++ Y+ + + + I++ KGE VA+ A + + + G+
Sbjct: 257 DNAVDAISYGAMLTAPGIVAYQR-FRVKDTVAILTLKGELVAIGEADVDSQKLVDMKKGI 315
Query: 121 VAKIKRVIMDRDTYPRKW 138
V K KRV+M RD YPR W
Sbjct: 316 VVKPKRVLMPRDIYPRSW 333
>sp|O59357|TRUB_PYRHO Probable tRNA pseudouridine synthase B OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=truB PE=3 SV=1
Length = 334
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 83/138 (60%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG E++ LVTLHD+ D + + + E LRR I+P+E + +I +K
Sbjct: 197 MAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEKYLRRAIQPMEKAVEHLPKIWIK 256
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV AV +GA + +PG+++ GI+ + + I++ K E VAL A MT+ M G+
Sbjct: 257 DSAVAAVAHGANLTVPGIVKLNVGIKRGDLVAIMTLKDELVALGKAMMTSQEMMQRSKGI 316
Query: 121 VAKIKRVIMDRDTYPRKW 138
+++V M RD YP+ W
Sbjct: 317 AVDVEKVFMPRDWYPKLW 334
>sp|O26140|TRUB_METTH Probable tRNA pseudouridine synthase B OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=truB PE=3 SV=1
Length = 324
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 85/139 (61%), Gaps = 3/139 (2%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGH-KRIIL 59
M ELRR G +EE GLVTLHD+KDA + + DE+ LR I P+E VGH R+++
Sbjct: 187 MAELRRTAVGPFTEE-GLVTLHDLKDAYQFWVEDGDETFLRECILPME-FAVGHLPRVVI 244
Query: 60 KDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHG 119
DSAV+A+C+GA + G+ +D I + + I++ KGE V + A M+ +A D G
Sbjct: 245 LDSAVDAICHGADLARGGIAGLDDNIAWGDTVAIMTLKGELVGVGEASMSALDIAAADGG 304
Query: 120 VVAKIKRVIMDRDTYPRKW 138
+V + ++V M+ TYPR W
Sbjct: 305 LVIETRKVFMEPGTYPRMW 323
>sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=truB PE=1 SV=1
Length = 334
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 83/138 (60%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG E++ LVTLHD+ D + + + E +R+ I+P+E + +I +K
Sbjct: 197 MAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVEHLPKIWIK 256
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV AV +GA + +PG+++ GI+ + + I++ K E VAL A M+T M G+
Sbjct: 257 DSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIERSKGI 316
Query: 121 VAKIKRVIMDRDTYPRKW 138
+++V M RD YP+ W
Sbjct: 317 AVDVEKVFMPRDWYPKLW 334
>sp|Q5JJE8|TRUB_PYRKO Probable tRNA pseudouridine synthase B OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=truB PE=3
SV=1
Length = 338
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 81/138 (58%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG E++ LVTLHD+ D + + + E R+ I+P+E + ++ ++
Sbjct: 197 MAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGVEEYFRKAIQPMEKAVEHLPKVWIR 256
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV AV +GA + +PGV++ GI+ + + I++ K E VAL A MTT M G+
Sbjct: 257 DSAVAAVTHGADLAVPGVVKLHKGIKKGDLVAIMTLKDELVALGKAMMTTGEMLQKSKGI 316
Query: 121 VAKIKRVIMDRDTYPRKW 138
+ +V M RD YP+ W
Sbjct: 317 AVDVDKVFMPRDWYPKLW 334
>sp|C5A255|TRUB_THEGJ Probable tRNA pseudouridine synthase B OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=truB PE=3 SV=1
Length = 334
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 81/138 (58%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG E++ LVTLHD+ D + + + E R+ I+P+E + ++ ++
Sbjct: 197 MAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIR 256
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV AV +GA + +PG+++ GI+ + + I++ K E VAL A MT+ M G+
Sbjct: 257 DSAVAAVTHGADLAVPGIVKLHKGIKKGDLVAIMTLKDELVALGKAMMTSGEMLQRSKGI 316
Query: 121 VAKIKRVIMDRDTYPRKW 138
+ +V M RD YPR W
Sbjct: 317 AVDVDKVFMPRDWYPRMW 334
>sp|Q7LWY0|TRUB_PYRFU Probable tRNA pseudouridine synthase B OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=truB
PE=1 SV=1
Length = 340
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 81/138 (58%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG E++ L+TLHD+ D Y + + E R+ I+P+E + ++ +K
Sbjct: 197 MSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIK 256
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV AV +GA + +PG+ + GI+ + + I++ K E VAL A MT+ M G+
Sbjct: 257 DSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGI 316
Query: 121 VAKIKRVIMDRDTYPRKW 138
+++V M RD YP+ W
Sbjct: 317 AVDVEKVFMPRDWYPKLW 334
>sp|A6VHV2|TRUB_METM7 Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=truB PE=3 SV=1
Length = 333
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR SG E + V L D+ DA + + +E LR++++PLE L K+II+K
Sbjct: 181 MQELRRTISGPFYENEA-VYLQDLLDAYIFWKEDGNEEELRKLVKPLEYGLQHLKKIIVK 239
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+AVC+GA + GV + E GI DE ++I + KGEAVA+ M T M + G
Sbjct: 240 DSAVDAVCHGATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGE 299
Query: 121 VAKIKRVIMDRDTYPRKW 138
V +I RVIM+ YPR W
Sbjct: 300 VVEITRVIMEPGIYPRIW 317
>sp|A4G0N3|TRUB_METM5 Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=truB PE=3 SV=1
Length = 333
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR SG E + V L D+ DA + + +E LR++++PLE L K+II+K
Sbjct: 181 MQELRRTISGPFYENEA-VYLQDLLDAYIFWKEDGNEEELRKLVKPLEYGLQHLKKIIVK 239
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+AVC+GA + GV + E GI DE ++I + KGEAVA+ M T M + G
Sbjct: 240 DSAVDAVCHGATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGE 299
Query: 121 VAKIKRVIMDRDTYPRKW 138
V +I RVIM+ YPR W
Sbjct: 300 VVEITRVIMEPGIYPRIW 317
>sp|Q6LWM3|TRUB_METMP Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain S2 / LL) GN=truB PE=3 SV=1
Length = 333
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR SG E + V L D+ DA + + +E LR++++PLE L K+II+K
Sbjct: 181 MQELRRTISGPFYENEA-VYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKKIIIK 239
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+AVC+GA + G+ + E G+ DE ++I + KGEAVA+ M T M + G
Sbjct: 240 DSAVDAVCHGATLYSSGISKIEKGLGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGE 299
Query: 121 VAKIKRVIMDRDTYPRKW 138
V +I RVIM+ YPR W
Sbjct: 300 VVEITRVIMEPGIYPRIW 317
>sp|B6YSP4|TRUB_THEON Probable tRNA pseudouridine synthase B OS=Thermococcus onnurineus
(strain NA1) GN=truB PE=3 SV=1
Length = 334
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 81/138 (58%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR RSG E++ LVTLHD+ D + + + E R+ I+P+E + ++ ++
Sbjct: 197 MAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIR 256
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV AV +GA + +PG+++ GI+ + + +++ K E VAL A MT+ M G+
Sbjct: 257 DSAVAAVTHGADLAVPGIVKVHKGIKKGDLVAVMTLKDELVALGKATMTSGEMLQKSKGI 316
Query: 121 VAKIKRVIMDRDTYPRKW 138
+ +V M RD YP+ W
Sbjct: 317 AVDVDKVFMPRDWYPKLW 334
>sp|A9A8X7|TRUB_METM6 Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=truB PE=3 SV=1
Length = 333
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR SG E + V L D+ DA + + +E LR++++PLE L K+II+K
Sbjct: 181 MQELRRTISGPFYENEA-VYLQDLLDAYISWKEDGNEEELRKLVKPLEYGLQHLKKIIVK 239
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+AVC+GA + GV + E GI DE ++I + KGEAVA+ M T M + G
Sbjct: 240 DSAVDAVCHGATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGE 299
Query: 121 VAKIKRVIMDRDTYPRKW 138
V +I RVIM+ YPR W
Sbjct: 300 VVEITRVIMEPGIYPRIW 317
>sp|B1L793|TRUB_KORCO Probable tRNA pseudouridine synthase B OS=Korarchaeum cryptofilum
(strain OPF8) GN=truB PE=3 SV=1
Length = 325
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M +LRR RSGI +E+D VTL DIKDA + + DES +R+VI PLE + +I +K
Sbjct: 186 MRDLRRIRSGIFTEKD-CVTLEDIKDAYDSWRESGDESKIRKVILPLEEAVRHLPKIYVK 244
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV ++ +GA + + G+ GI+ + +++ KGE +A+ A M M + D GV
Sbjct: 245 DSAVASLTHGASLKVKGICSLSRGIKKGSIVALMTLKGELIAIGRALMDFDEMLSADSGV 304
Query: 121 VAKIKRVIMDRDTYPRKWGLG 141
A I+RVIM RD YP W G
Sbjct: 305 AASIERVIMPRDLYPPMWKTG 325
>sp|O30001|TRUB_ARCFU Probable tRNA pseudouridine synthase B OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=truB PE=3 SV=1
Length = 325
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR R+G + ED TL D+ DA + + +E LR +I+P+E +I++K
Sbjct: 184 MQELRRTRTG-KFGEDMCYTLQDLLDAYVFWKEEGEEKYLREIIKPMEVAAAELPKIVIK 242
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+A+C+GA + + GV E ++ D + I + K E VA+ A M + G+
Sbjct: 243 DSAVDAICHGANLSVRGVAYVEKNVKKDSTVAIFTLKNELVAIGRALMDAEDIYRLKKGI 302
Query: 121 VAKIKRVIMDRDTYPRKW 138
A I+RV+M+R YP+ W
Sbjct: 303 AADIQRVMMERGVYPKVW 320
>sp|A3MS77|TRUB_PYRCJ Probable tRNA pseudouridine synthase B OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=truB PE=3 SV=1
Length = 333
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR +E++ VTL D+ DA Y++ ++ D++ LRRV+ P+E + +I ++
Sbjct: 186 MRELRRVAVSCFTEDEA-VTLQDLADAYYIWKKYGDDTYLRRVLLPIEEIARPLPKIWVR 244
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+A+C GA + PGV ++E + + + KGE + + A + + + + G+
Sbjct: 245 DSAVDALCNGAPLAAPGVAKFEHPFSRGDLVAYFTLKGELIGIGRALVDSEEVKKMEKGL 304
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
VA+ RV+M R TYP W G KS
Sbjct: 305 VARTDRVVMPRGTYPPMWRRGGKS 328
>sp|A6UWC6|TRUB_META3 Probable tRNA pseudouridine synthase B OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=truB PE=3 SV=1
Length = 331
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 11/148 (7%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR SG +E+D +V L D+ DA + ++ DE+ LR++I+P+E L +II+K
Sbjct: 181 MQELRRIVSGPFTEKD-IVYLQDLTDAYIFWKENGDETELRKIIKPMEYGLQHINKIIVK 239
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHG- 119
DSAV+A+C+GA + L GV + GI DE ++I + KGEA+ + A + T +
Sbjct: 240 DSAVDAICHGANVYLNGVSKLSKGIGADETVLIETLKGEAIGIGTALLNTKNVLKESKNE 299
Query: 120 ---------VVAKIKRVIMDRDTYPRKW 138
+ I+R+ M +TYP+ W
Sbjct: 300 EDNREKYKEPIVDIERIFMSPNTYPKMW 327
>sp|B1YA64|TRUB_PYRNV Probable tRNA pseudouridine synthase B OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=truB PE=3 SV=1
Length = 331
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR +EE+ VTL D+ DA Y++ ++ D++ LRRV+ P+E + +I ++
Sbjct: 186 MRELRRVAVSCYTEEE-TVTLQDVADAYYIWRKYGDDTYLRRVLLPIEEIARHLPKIWVR 244
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+A+C GA + PGV ++E E + + KGE + + A + + + + G+
Sbjct: 245 DSAVDALCNGAPLAAPGVAKFEAPFSRGELVAYFTLKGELIGVGRALVDSEEVKKMEKGL 304
Query: 121 VAKIKRVIMDRDTYPRKW 138
VA+ RV+M R TYP W
Sbjct: 305 VARTDRVVMKRGTYPPLW 322
>sp|Q8ZYB3|TRUB_PYRAE Probable tRNA pseudouridine synthase B OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=truB PE=3 SV=1
Length = 333
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR +E++ VTL DI DA Y++ + D++ LRRV+ P+E + +I ++
Sbjct: 186 MRELRRIAVSCYTEDEA-VTLQDIADAYYIWKHYGDDTYLRRVLLPIEEIARHLPKIWVR 244
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+A+C GA + PG+ ++E + + + + KGE + + A + + + + G+
Sbjct: 245 DSAVDAICNGAPLAAPGISKFETPFSKGDLVAMFTLKGELIGIGRALVGSEEVKKMERGL 304
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
VA+ RV+M R TYP W KS
Sbjct: 305 VARTDRVVMRRGTYPAMWKRKAKS 328
>sp|A1RTL7|TRUB_PYRIL Probable tRNA pseudouridine synthase B OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=truB PE=3 SV=1
Length = 328
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR +E D V L D+ DA Y++ ++ D++ LRRV+ P+E + +I ++
Sbjct: 186 MRELRRIAVSCYTE-DETVALQDVADAYYIWRRYGDDTYLRRVLLPIEEIARHLPKIWVR 244
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+A+C GA + PGV+++E E + + K E + A + + + G+
Sbjct: 245 DSAVDALCNGAPLAAPGVVKFETPFSKGELVAFFTLKDELIGFGRALVESEEAKKMERGL 304
Query: 121 VAKIKRVIMDRDTYPRKW 138
VA++ RVIM R TYP W
Sbjct: 305 VARVDRVIMRRGTYPPMW 322
>sp|Q9YDC3|TRUB_AERPE Probable tRNA pseudouridine synthase B OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=truB PE=3 SV=2
Length = 354
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 1 MIELRRNRSGIQSEEDGL-VTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIIL 59
M ELRR R+G SE+ GL V L D+ A+ + + + LLRRV+ P E + ++++
Sbjct: 207 MRELRRIRTGPFSEDSGLMVRLDDVAYAVIRWREEGKDDLLRRVVIPGEYSVCHIPKVLV 266
Query: 60 KDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHG 119
+DSAV ++ +GAQ+ PGV E+G+E + +++ KGE + L A + M + G
Sbjct: 267 RDSAVESLTHGAQLAAPGVAAVEEGVEKGGMVALMTLKGELIGLGKALASAQEMLEAERG 326
Query: 120 VVAKIKRVIMDRDTYPRKW 138
+V R+IM+R YPR W
Sbjct: 327 IVVSPTRIIMERGLYPRMW 345
>sp|A4WH37|TRUB_PYRAR Probable tRNA pseudouridine synthase B OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=truB PE=3 SV=1
Length = 331
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR +E++ VTL D+ DA Y++ ++ D++ LR V+ P+E + +I ++
Sbjct: 186 MRELRRVAVTCFTEDEA-VTLQDVADAYYIWKKYGDDTYLRSVLLPIEEIARHLPKIWVR 244
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV+AVC+GA + PG+ ++E + + + + KGE V + A + + + + G
Sbjct: 245 DSAVDAVCHGAPLAAPGISKFEVPFSKGDIVAMFTLKGELVGIGRALVDSEEVKKMERGA 304
Query: 121 VAKIKRVIMDRDTYPRKWGLGPKS 144
V + RV+M R TYP W G ++
Sbjct: 305 VVRTDRVVMRRGTYPAMWKKGQRA 328
>sp|P60346|TRUB_NANEQ Probable tRNA pseudouridine synthase B OS=Nanoarchaeum equitans
(strain Kin4-M) GN=truB PE=3 SV=1
Length = 348
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILK 60
M ELRR +SG E+ V L DI D++Y + + +E +R+V P+E + K+I +
Sbjct: 208 MQELRRIKSG-PFHENNSVYLQDIVDSLYFWKEEGNEEYIRKVFLPVEEAVKHLKKIYIL 266
Query: 61 DSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGV 120
DSAV A+ +GA + +PG+ + I+ + + I + KGE VA+ +A M + M G+
Sbjct: 267 DSAVAAIVHGANLAVPGIAKLYSNIKKGDLVSIHTLKGELVAIGIALMDSKEMLEKKRGI 326
Query: 121 VAKIKRVIMDRDTYPRKW 138
I+RV M YP+ W
Sbjct: 327 AVDIERVFMKPGLYPKMW 344
>sp|Q5UXH1|TRUB_HALMA Probable tRNA pseudouridine synthase B OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=truB PE=3 SV=1
Length = 314
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 1 MIELRRNRSGIQSEEDG-LVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIIL 59
M +LRR +G + +DG L T+HD+ DA+ + DE+ LR +I+P E L R+ +
Sbjct: 186 MGDLRRTATG--TFDDGSLSTMHDLVDALA-FAADGDEAQLREIIQPAERALSHLPRVTI 242
Query: 60 KDSAVNAVCYGAQIMLPGVLRY------EDGIEMDEEIVIVSTKGEAVALALAQMTTSTM 113
SA V GA + PGV+ + E+D ++V V+ G AV L T +
Sbjct: 243 APSAAREVAEGAPVYAPGVIETGPAEVGDATPEIDSQVVSVTPDGAAVCLG----TLVSD 298
Query: 114 ATCDHGVVAKIKRVIM 129
D G+V ++ R+++
Sbjct: 299 PDADSGLVVELDRMLV 314
>sp|Q9HPA4|TRUB_HALSA Probable tRNA pseudouridine synthase B OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=truB PE=3
SV=1
Length = 301
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAM-YLYDQHKDES------LLRRVIRPLEGLLVG 53
M LRR+ + + D LVTLHD+ DA+ +L D E LR ++P E L
Sbjct: 168 MGHLRRSATTPFDDTD-LVTLHDLADAVAWLRDTDDTEPPDAPADALRAAVQPAERALTH 226
Query: 54 HKRIILKDSAVNAVCYGAQIMLPGVLRYE--DGIEMDEEIVIVSTKGEAVALALAQMTTS 111
R+ + DSA + V GA + PGV+ D +V T G A+ L ++
Sbjct: 227 LPRLTIADSAAHEVATGAPVYAPGVIDTTALPTPPADGALVACYTAG-GTAVCLGRLVGD 285
Query: 112 TMATCDHGVVAKIKRVIM 129
A D GVV ++RV++
Sbjct: 286 PDA--DAGVVVALERVLV 301
>sp|B0R686|TRUB_HALS3 Probable tRNA pseudouridine synthase B OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=truB PE=3 SV=1
Length = 301
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 1 MIELRRNRSGIQSEEDGLVTLHDIKDAM-YLYDQHKDES------LLRRVIRPLEGLLVG 53
M LRR+ + + D LVTLHD+ DA+ +L D E LR ++P E L
Sbjct: 168 MGHLRRSATTPFDDTD-LVTLHDLADAVAWLRDTDDTEPPDAPADALRAAVQPAERALTH 226
Query: 54 HKRIILKDSAVNAVCYGAQIMLPGVLRYE--DGIEMDEEIVIVSTKGEAVALALAQMTTS 111
R+ + DSA + V GA + PGV+ D +V T G A+ L ++
Sbjct: 227 LPRLTIADSAAHEVATGAPVYAPGVIDTTALPTPPADGALVACYTAG-GTAVCLGRLVGD 285
Query: 112 TMATCDHGVVAKIKRVIM 129
A D GVV ++RV++
Sbjct: 286 PDA--DAGVVVALERVLV 301
>sp|Q60377|Y066_METJA Uncharacterized protein MJ0066 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0066 PE=3 SV=1
Length = 480
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 71 AQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMD 130
++ PG++ + D IE ++++IV V + LA +++ + + G V K++ I D
Sbjct: 149 GSVLRPGIVEFTDDIEEKDDVIIVDENDRVVGVGLAVVSSEDIKNMEKGKVVKVRFFIKD 208
Query: 131 RDTY 134
+ Y
Sbjct: 209 NEDY 212
>sp|Q9WZW0|TRUB_THEMA tRNA pseudouridine synthase B OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=truB PE=1 SV=1
Length = 309
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 22 HDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILKDSAVNAVCYGAQIMLPGVLRY 81
H I++++ +++ +E + R+I PLE L R+++ + + G+QI L +L+
Sbjct: 199 HTIEESLNVFEAAPEE-IENRII-PLEKCLEWLPRVVVHQESTKMILNGSQIHLE-MLKE 255
Query: 82 EDGIEMDEEIVIVSTKGEAVALALAQMTTSTMAT 115
DG + E + + + +G +ALA A+ +S + T
Sbjct: 256 WDGFKKGEVVRVFNEEGRLLALAEAERNSSFLET 289
>sp|A5IIS7|TRUB_THEP1 tRNA pseudouridine synthase B OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=truB PE=3 SV=1
Length = 309
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 22 HDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILKDSAVNAVCYGAQIMLPGVLRY 81
+ I++++ +++ +E + R+I PLE L R+++ + + G+QI L +L+
Sbjct: 199 YTIEESLNVFEAAPEE-IENRII-PLEKCLEWLPRVVVHQESTKTILNGSQIHLE-MLKE 255
Query: 82 EDGIEMDEEIVIVSTKGEAVALALAQMTTSTMAT 115
DG + E + + + +G +ALA A+ +S + T
Sbjct: 256 WDGFKKGEVVRVFNEEGRLLALAEAERNSSFLET 289
>sp|B3PKF2|PYRB_CELJU Aspartate carbamoyltransferase OS=Cellvibrio japonicus (strain
Ueda107) GN=pyrB PE=3 SV=1
Length = 338
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 12 QSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILKDSAVNAVCYGA 71
Q + + + + D+ DAM Y +L RRV R LEG ++G+ + + S V +GA
Sbjct: 13 QFQREDINRIFDVADAMEPY------ALRRRVTRVLEGAILGN--MFFEPSTRTRVSFGA 64
Query: 72 QI-MLPGVLRYEDGIEMDEEIVIVSTKGEAV 101
+L G +R G E TKGE++
Sbjct: 65 AFNLLGGNVRETTGFESSS-----LTKGESL 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,410,094
Number of Sequences: 539616
Number of extensions: 1779987
Number of successful extensions: 4875
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4816
Number of HSP's gapped (non-prelim): 60
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)