Query psy1178
Match_columns 144
No_of_seqs 188 out of 1262
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:46:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u28_A H/ACA ribonucleoprotein 100.0 2.3E-33 7.7E-38 219.4 11.9 144 1-144 213-356 (400)
2 2apo_A Probable tRNA pseudouri 100.0 2.7E-28 9.3E-33 189.3 12.3 139 1-140 217-355 (357)
3 2aus_C Pseudouridine synthase; 100.0 8.2E-28 2.8E-32 185.8 13.2 138 1-138 197-334 (334)
4 3zv0_C H/ACA ribonucleoprotein 99.9 1.3E-25 4.4E-30 160.2 9.8 105 40-144 59-165 (195)
5 1k8w_A TRNA pseudouridine synt 99.8 3.2E-18 1.1E-22 131.2 10.8 111 1-130 210-324 (327)
6 1sgv_A TRNA pseudouridine synt 99.7 1.4E-16 4.7E-21 121.5 7.2 96 1-130 196-292 (316)
7 1r3e_A TRNA pseudouridine synt 99.6 2.4E-16 8.2E-21 119.9 6.2 94 1-107 188-281 (309)
8 3r90_A Malignant T cell-amplif 99.5 3E-15 1E-19 107.1 4.1 96 43-143 77-180 (188)
9 1q7h_A Conserved hypothetical 99.5 1.6E-14 5.3E-19 100.3 6.1 84 54-142 70-153 (153)
10 3d79_A PUA domain, putative un 99.5 2.8E-14 9.7E-19 101.4 5.1 83 55-142 95-178 (179)
11 2cx0_A Hypothetical protein AP 99.3 4.9E-13 1.7E-17 95.6 3.4 94 43-141 75-179 (187)
12 1iq8_A Archaeosine tRNA-guanin 99.0 6.9E-10 2.4E-14 91.3 9.1 74 55-128 508-581 (582)
13 2q07_A Uncharacterized protein 98.9 4.6E-09 1.6E-13 80.2 7.2 70 55-131 231-300 (306)
14 2j5v_A Glutamate 5-kinase; pro 98.4 6.4E-07 2.2E-11 70.0 6.9 64 51-114 272-336 (367)
15 2p38_A Protein involved in rib 98.2 2.6E-06 9E-11 59.5 6.2 68 56-135 97-164 (166)
16 1sqw_A Saccharomyces cerevisia 98.2 9.1E-06 3.1E-10 57.6 8.6 78 55-135 95-173 (188)
17 3c0k_A UPF0064 protein YCCW; P 94.6 0.066 2.3E-06 41.6 5.9 54 54-107 2-56 (396)
18 2as0_A Hypothetical protein PH 94.2 0.11 3.9E-06 40.2 6.5 54 54-107 1-55 (396)
19 4dmg_A Putative uncharacterize 92.4 0.23 7.7E-06 38.8 5.6 52 53-107 4-56 (393)
20 2b78_A Hypothetical protein SM 79.2 2.4 8.3E-05 32.6 4.6 52 54-107 1-52 (385)
21 2frx_A Hypothetical protein YE 74.5 6.6 0.00023 31.3 6.0 46 54-107 411-456 (479)
22 1wxx_A TT1595, hypothetical pr 74.5 4.6 0.00016 30.9 5.0 49 56-107 2-50 (382)
23 3m4x_A NOL1/NOP2/SUN family pr 72.8 9.1 0.00031 30.4 6.4 57 55-140 399-455 (456)
24 3uep_A YSCQ-C, type III secret 55.6 27 0.00093 21.4 4.9 65 53-133 26-90 (96)
25 1o9y_A HRCQ2; secretory protei 38.7 60 0.0021 19.1 6.0 60 53-128 22-81 (84)
26 2v2f_A Penicillin binding prot 31.4 30 0.001 15.5 1.7 12 91-102 7-18 (26)
27 1hf2_A MINC, septum site-deter 26.7 1.3E+02 0.0046 20.9 5.3 28 65-92 106-133 (210)
28 3dh3_A Ribosomal large subunit 25.7 38 0.0013 25.1 2.3 25 2-27 201-232 (290)
29 1o6a_A Putative flagellar moto 25.0 1.2E+02 0.0041 18.3 4.3 61 53-129 26-86 (96)
30 2w6a_A ARF GTPase-activating p 24.1 34 0.0012 19.2 1.3 17 10-26 1-17 (63)
31 2ki8_A Tungsten formylmethanof 23.8 1.5E+02 0.0053 19.1 7.4 14 54-67 52-65 (146)
No 1
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=100.00 E-value=2.3e-33 Score=219.38 Aligned_cols=144 Identities=65% Similarity=1.123 Sum_probs=122.4
Q ss_pred CCccEeeeeecccccCceeeHHHHHHHHHHHhhcCCcccccccccccccccCcCCEEEEChhhHHhhhCCceecCCCeec
Q psy1178 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILKDSAVNAVCYGAQIMLPGVLR 80 (144)
Q Consensus 1 m~~LrRt~~g~F~~~~~~vtL~~l~~~~~~~~~~~~~~~l~~~LlP~~~aL~~lp~V~l~~~~~~~l~~G~~l~~~~~~~ 80 (144)
|++||||++|+|+++++++||++|+++...+++..++..+++.|+|++.+|.++|+|.|+++++++++||+.++.+++..
T Consensus 213 m~~LrRt~~G~F~~~~a~vtL~~l~~~~~~~~~~~~~~~l~~~l~P~e~~l~~lp~V~L~deaa~~V~NGq~L~~pgVl~ 292 (400)
T 3u28_A 213 MQELRRVRSGALSENDNMVTLHDVMDAQWVYDNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLR 292 (400)
T ss_dssp EEEEEEEEETTEETTSSCBCHHHHHHHHHHHHHHCCCHHHHHHCEEGGGGGTTSCEEEECHHHHHHHHHHSEEEGGGEEE
T ss_pred EEEEEEEEEcCcchhhhcCCHHHHHHhhhhhhcccchhhHhhhcCCHHHHHhhCCccccCHHHHHHHHCcCccccCcccc
Confidence 78999999999999966799999987643333334445677889999999999999999999999999999999988765
Q ss_pred ccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEeecCCccccCcCCCCCC
Q psy1178 81 YEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMDRDTYPRKWGLGPKS 144 (144)
Q Consensus 81 ~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~~~~~~~~w~~~~~~ 144 (144)
....+..++.|++++.+|+++|||++.+++++|...++|.+++++|||++.|+||..|++||++
T Consensus 293 ~~~~i~~gd~VvVvt~kGelLAIG~A~mss~em~~~~~G~vvk~~rV~m~~~~yp~~w~~~~~~ 356 (400)
T 3u28_A 293 YEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVA 356 (400)
T ss_dssp ECTTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCSSSEEEEEEEECSCTTSSCCCC------
T ss_pred ccccCCCCCEEEEEeCCCcEEEEEEEEeCHHHHhhcCCcEEEEEEEEeecCCCCccccCcChhH
Confidence 5455677889999999999999999999999999999999999999999999999999999975
No 2
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=99.95 E-value=2.7e-28 Score=189.26 Aligned_cols=139 Identities=42% Similarity=0.689 Sum_probs=114.7
Q ss_pred CCccEeeeeecccccCceeeHHHHHHHHHHHhhcCCcccccccccccccccCcCCEEEEChhhHHhhhCCceecCCCeec
Q psy1178 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILKDSAVNAVCYGAQIMLPGVLR 80 (144)
Q Consensus 1 m~~LrRt~~g~F~~~~~~vtL~~l~~~~~~~~~~~~~~~l~~~LlP~~~aL~~lp~V~l~~~~~~~l~~G~~l~~~~~~~ 80 (144)
|++||||++|+|+++ +++||++|+++...+.+.++...+++.|+|++.+|.++|.|.|+++++.+|+||+.|..+++..
T Consensus 217 ~~~LrRt~~G~f~~~-~a~tl~~l~~~~~~~~~~g~~~~l~~~l~P~e~~l~~lP~v~l~~~~~~~i~nG~~L~~pgi~~ 295 (357)
T 2apo_A 217 MQELRRTKSGCFEEK-DAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRHLKKVVVKDSAVDAICHGADVYVRGIAK 295 (357)
T ss_dssp EEEEEEEEETTEEGG-GCBCHHHHHHHHHHHHTSCCCHHHHHHEEEGGGGGTTSEEEEECHHHHHHHHTTCCEEGGGEEE
T ss_pred EEEEEEEEEccCcHH-HccCHHHHHhhhhhhhccCchhhHhhheeChhHhhccCcEEEECHHHHHHHhCcCccCCCcccc
Confidence 789999999999999 5799999987643333333334566789999999999999999999999999999998776432
Q ss_pred ccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEeecCCccccCcCC
Q psy1178 81 YEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMDRDTYPRKWGL 140 (144)
Q Consensus 81 ~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~~~~~~~~w~~ 140 (144)
....+..++.|++++.+|+|+|||++.++++++...++|..++|.|||++.|+||..|+.
T Consensus 296 ~~~~i~~gd~V~v~~~~G~flAIGea~~~~~ei~~~~kG~vvKp~rVf~~~~~yp~~w~~ 355 (357)
T 2apo_A 296 LSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKGVAVDVERVYMDRGTYPRMWKR 355 (357)
T ss_dssp EETTCCTTCEEEEECTTSCEEEEEEESSCHHHHHHCSSSEEEEEEEECSCTTSSCCC---
T ss_pred cccccCCCCeEEEEcCCCEEEEEEEeccccccccccCCCeEEEEEEEeeCCCccCccccc
Confidence 223445677899998899999999999999999988889889999999999999999984
No 3
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=99.95 E-value=8.2e-28 Score=185.77 Aligned_cols=138 Identities=38% Similarity=0.640 Sum_probs=115.7
Q ss_pred CCccEeeeeecccccCceeeHHHHHHHHHHHhhcCCcccccccccccccccCcCCEEEEChhhHHhhhCCceecCCCeec
Q psy1178 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILKDSAVNAVCYGAQIMLPGVLR 80 (144)
Q Consensus 1 m~~LrRt~~g~F~~~~~~vtL~~l~~~~~~~~~~~~~~~l~~~LlP~~~aL~~lp~V~l~~~~~~~l~~G~~l~~~~~~~ 80 (144)
|++||||++|+|+++++|+||++|+++...+.+.++...+++.|+|++.+|.++|.|.|+++++++++||+.+..+++..
T Consensus 197 ~~~LrRt~~g~f~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~p~~~~l~~~p~V~L~de~a~~V~nGq~L~~~gv~~ 276 (334)
T 2aus_C 197 MAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVEHLPKIWIKDSAVAAVAHGANLTVPGIVK 276 (334)
T ss_dssp EEEEEEEEETTEESSTTEECHHHHHHHHHHHHTTCCCHHHHHHSEEGGGGGTTSCEEEECHHHHHHHHTTCCEEGGGEEE
T ss_pred EeEEEEEEEccCchhhcccCHHHHHhhhhhhccccchhhhhhhccChhHhcccccEEEECHHHHHHHHCCCccccCcccc
Confidence 68999999999999954799999987543222222334466779999999999999999999999999999998765433
Q ss_pred ccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEeecCCccccCc
Q psy1178 81 YEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMDRDTYPRKW 138 (144)
Q Consensus 81 ~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~~~~~~~~w 138 (144)
....+..++.|++++.+|+|+|||++.++++++....+|..++|.|||++.|+||..|
T Consensus 277 ~~~~i~~gd~V~V~~~~G~fLAIGe~~~s~~e~~~~~~G~~vKp~rV~~~~~~yp~~w 334 (334)
T 2aus_C 277 LNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIERSKGIAVDVEKVFMPRDWYPKLW 334 (334)
T ss_dssp EETTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHCSSSEEEEEEEECSCTTTSCCCC
T ss_pred cccccCCCCEEEEEecCCeEEEEEEeccCchhccccCCCeEEEEEEEeeCCCCCCCCC
Confidence 2234456778999988899999999999999999888998899999999999999999
No 4
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-25 Score=160.22 Aligned_cols=105 Identities=67% Similarity=1.185 Sum_probs=100.2
Q ss_pred ccccc--cccccccCcCCEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCC
Q psy1178 40 LRRVI--RPLEGLLVGHKRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCD 117 (144)
Q Consensus 40 l~~~L--lP~~~aL~~lp~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~ 117 (144)
++..| +|++++|.++|+|.|+++++++|++|++|+++|+....+.|..|+.|+|++.+|++||+|.+.+++++|...+
T Consensus 59 l~~wI~~~P~E~aL~~~g~VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~~GD~V~V~~~~G~~IAvG~a~~sS~Ei~~~~ 138 (195)
T 3zv0_C 59 LKSYISSGPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCD 138 (195)
T ss_dssp HHHHBCSSCGGGGGTTSEEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCS
T ss_pred HHHHHhhccHHHHhccCCeEEECHHHHHHHhcCCCccCCCcEecCCCcCCCCEEEEEcCCCCEEEEEEEcCCHHHHhhcC
Confidence 44578 9999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CceEEEEEEEeecCCccccCcCCCCCC
Q psy1178 118 HGVVAKIKRVIMDRDTYPRKWGLGPKS 144 (144)
Q Consensus 118 ~g~~v~~~rv~~~~~~~~~~w~~~~~~ 144 (144)
+|.+++++|||++.++||+.|++||++
T Consensus 139 kG~aVkv~rVimd~~~Yp~~W~~gp~~ 165 (195)
T 3zv0_C 139 HGVVASVKRCIMERDLYPRRWGLGPVA 165 (195)
T ss_dssp SSEEEEEEEECBCTTSSCCCCSSCCHH
T ss_pred CcEEEEEEEEEeCCCCcCcccccCcHH
Confidence 999999999999999999999999974
No 5
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=99.76 E-value=3.2e-18 Score=131.16 Aligned_cols=111 Identities=16% Similarity=0.274 Sum_probs=86.0
Q ss_pred CCccEeeeeecccccCceeeHHHHHHHHHHHhhcC--C-cccccccccccccccCcCCEEEEChhhHHhhhCCceecCCC
Q psy1178 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHK--D-ESLLRRVIRPLEGLLVGHKRIILKDSAVNAVCYGAQIMLPG 77 (144)
Q Consensus 1 m~~LrRt~~g~F~~~~~~vtL~~l~~~~~~~~~~~--~-~~~l~~~LlP~~~aL~~lp~V~l~~~~~~~l~~G~~l~~~~ 77 (144)
|++||||++|+|+++ +|+||++|+++... .+.. + ...+++.|+|++.+|.++|.|.++++++.+|+||+.+..++
T Consensus 210 ~~~LrRt~~G~F~~~-~a~~l~~l~~~~~~-~~~~~~~~~~~l~~~l~p~~~~l~~lp~v~l~~~~~~~l~~G~~l~~~~ 287 (327)
T 1k8w_A 210 VIYLRRLAVSKYPVE-RMVTLEHLRELVEQ-AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG 287 (327)
T ss_dssp EEEEEEEEETTCCGG-GCEEHHHHHHHHHH-HHHTTSCTHHHHGGGCBCTTGGGTTSCEEEECHHHHHHHTTTCCBCCSS
T ss_pred EEEEEEEEEcCCccc-cccCHHHHHHHHHh-hhcccccchhHHhhhccCHHHHHccCCEEEeCHHHHHHHhCcCccCCCC
Confidence 789999999999999 57999999864320 0000 0 13456689999999999999999999999999999987543
Q ss_pred eecccCCCCCCCEEEEE-cCCCCEEEEEEeecChhhHhcCCCceEEEEEEEeec
Q psy1178 78 VLRYEDGIEMDEEIVIV-STKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMD 130 (144)
Q Consensus 78 ~~~~~~~~~~~~~v~i~-~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~ 130 (144)
. ..++.+++| +.+|+|+|||+.. ..| .++|.|||+.
T Consensus 288 ~-------~~~~~v~v~~~~~g~~lai~~~~---------~~~-~~~p~rvf~~ 324 (327)
T 1k8w_A 288 A-------PLEGLVRVTEGENGKFIGMGEID---------DEG-RVAPRRLVVE 324 (327)
T ss_dssp C-------CSSSEEEEEETTTTEEEEEEEEC---------TTS-CEEEEEECCC
T ss_pred C-------CCCCeEEEEECCCCEEEEEEEEC---------CCC-EEEEEEEEcC
Confidence 2 123468888 7789999999873 234 6999999964
No 6
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=99.66 E-value=1.4e-16 Score=121.52 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=79.0
Q ss_pred CCccEeeeeecccccCceeeHHHHHHHHHHHhhcCCccccccccccc-ccccCcCCEEEEChhhHHhhhCCceecCCCee
Q psy1178 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPL-EGLLVGHKRIILKDSAVNAVCYGAQIMLPGVL 79 (144)
Q Consensus 1 m~~LrRt~~g~F~~~~~~vtL~~l~~~~~~~~~~~~~~~l~~~LlP~-~~aL~~lp~V~l~~~~~~~l~~G~~l~~~~~~ 79 (144)
|++||||++|+|+++ +|+||++|++. ...|+|+ +.++.++|.+.++++++.+++||+.+...+.
T Consensus 196 ~~~LrRt~~G~F~~~-~a~tl~~l~~~-------------~~~llpi~~~~l~~~p~v~l~~~~~~~l~~G~~l~~~~~- 260 (316)
T 1sgv_A 196 VTALRRTRVGRFELD-QARSLDDLAER-------------PALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGI- 260 (316)
T ss_dssp EEEEEEEEETTEEGG-GCBCHHHHHHS-------------CCCSEEHHHHHHHHSEEEECCHHHHHHHHTTCCCBCCCC-
T ss_pred EeeEEEEEEccCcHH-HccCHHHHhhc-------------hhccCCHHHHHHccCCeEEeCHHHHHHHHCcCcccCCCC-
Confidence 789999999999999 57999999741 1358898 6778999999999999999999999864331
Q ss_pred cccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEeec
Q psy1178 80 RYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMD 130 (144)
Q Consensus 80 ~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~ 130 (144)
.+.+++++.+|+|+|||+.. .+ .++|.|||+.
T Consensus 261 --------~~~~~~~~~~g~~lai~~~~----------~~-~~~p~rvf~~ 292 (316)
T 1sgv_A 261 --------DGVYAACDADGRVIALLRDE----------GS-RTRSVAVLRP 292 (316)
T ss_dssp --------CSCEEEECTTSCEEEEEEEE----------TT-EEEEEEESCC
T ss_pred --------CCeEEEECCCCEEEEEEEEc----------CC-eEEEEEEEec
Confidence 12478888889999999873 24 6999999973
No 7
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=99.63 E-value=2.4e-16 Score=119.94 Aligned_cols=94 Identities=24% Similarity=0.320 Sum_probs=74.6
Q ss_pred CCccEeeeeecccccCceeeHHHHHHHHHHHhhcCCcccccccccccccccCcCCEEEEChhhHHhhhCCceecCCCeec
Q psy1178 1 MIELRRNRSGIQSEEDGLVTLHDIKDAMYLYDQHKDESLLRRVIRPLEGLLVGHKRIILKDSAVNAVCYGAQIMLPGVLR 80 (144)
Q Consensus 1 m~~LrRt~~g~F~~~~~~vtL~~l~~~~~~~~~~~~~~~l~~~LlP~~~aL~~lp~V~l~~~~~~~l~~G~~l~~~~~~~ 80 (144)
|++||||++|+|+++ +|+||++++++ .+++.|+|++.+|.++|.+.++++++.+++||+.+..+++.
T Consensus 188 ~~~LrRt~~G~f~~~-~a~~l~~l~~~-----------~l~~~l~p~~~~l~~~p~v~l~~~~~~~~~~G~~l~~~~~~- 254 (309)
T 1r3e_A 188 AVELVRESVGPHTIE-ESLNVFEAAPE-----------EIENRIIPLEKCLEWLPRVVVHQESTKMILNGSQIHLEMLK- 254 (309)
T ss_dssp EEEEEEEEETTEEGG-GCBCTTTSCHH-----------HHHHHCEEGGGSSTTSCEEECCTTTHHHHTTTCCEESSSCC-
T ss_pred EEEEEEEEEcCCcHH-HccCHHHHhhc-----------hhhccccCHHHHhcCCCeEEeCHHHHHHHHCcCcccCCccc-
Confidence 789999999999999 57999999653 13456999999999999999999999999999999765321
Q ss_pred ccCCCCCCCEEEEEcCCCCEEEEEEee
Q psy1178 81 YEDGIEMDEEIVIVSTKGEAVALALAQ 107 (144)
Q Consensus 81 ~~~~~~~~~~v~i~~~~g~~laig~~~ 107 (144)
....+..++.+++++.+|+|+|||+..
T Consensus 255 ~~~~~~~~~~~~~~~~~g~~~ai~~~~ 281 (309)
T 1r3e_A 255 EWDGFKKGEVVRVFNEEGRLLALAEAE 281 (309)
T ss_dssp EECCCCTTCEEEEECSSSCEEEEEEES
T ss_pred ccccccCCCEEEEEcCCCeEEEEEEEc
Confidence 000112144688888889999999873
No 8
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}
Probab=99.54 E-value=3e-15 Score=107.13 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=85.7
Q ss_pred cccccccccC----cCCEEEEChhhHHhhhCCceecCCCeecccC---CCCCCCEEEEEcC-CCCEEEEEEeecChhhHh
Q psy1178 43 VIRPLEGLLV----GHKRIILKDSAVNAVCYGAQIMLPGVLRYED---GIEMDEEIVIVST-KGEAVALALAQMTTSTMA 114 (144)
Q Consensus 43 ~LlP~~~aL~----~lp~V~l~~~~~~~l~~G~~l~~~~~~~~~~---~~~~~~~v~i~~~-~g~~laig~~~~~~~~~~ 114 (144)
.++|.-+.|. -+|.|.+++.++++|++|++|++||+....+ .+..|+.|.|++. ++.++|||++.+++++|.
T Consensus 77 ~l~PTl~~l~~~p~~lp~v~Vd~~av~~v~~GA~Lm~PGv~~~~~~~~~i~~Gd~V~V~~~~~~~~vAVG~a~mss~e~~ 156 (188)
T 3r90_A 77 PFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIE 156 (188)
T ss_dssp CCEECHHHHHHSGGGSCEEEECGGGHHHHTTTCCEETHHHHSTTCBCCCCCTTCEEEEEETTCSSCSEEEEESSCHHHHH
T ss_pred eEechHHHHhhCcccCCEEEEChhHHHHhhcCCccccCeEEccCCCcccccCCCEEEEEECCCCcEEEEEEEEeCHHHHh
Confidence 5777777664 3799999999999999999999999887654 6889999999987 789999999999999999
Q ss_pred cCCCceEEEEEEEeecCCccccCcCCCCC
Q psy1178 115 TCDHGVVAKIKRVIMDRDTYPRKWGLGPK 143 (144)
Q Consensus 115 ~~~~g~~v~~~rv~~~~~~~~~~w~~~~~ 143 (144)
...+|.++++.|+++| .+|++|++
T Consensus 157 ~~~kG~aV~v~H~~~D-----~LW~~~~~ 180 (188)
T 3r90_A 157 KVNKGIGIENIHYLND-----GLWHMKTY 180 (188)
T ss_dssp HHCCSEEEEEEEETTS-----HHHHHCBS
T ss_pred hcCCcEEEEEEEEECc-----hhhhcCCc
Confidence 8899999999999999 89999886
No 9
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=99.52 E-value=1.6e-14 Score=100.35 Aligned_cols=84 Identities=21% Similarity=0.366 Sum_probs=79.0
Q ss_pred CCEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEeecCCc
Q psy1178 54 HKRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMDRDT 133 (144)
Q Consensus 54 lp~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~~~~ 133 (144)
.|.|.|++++.+++.+|++|+++|+....+++..|+.|.|++.+|.++|+|.+.++++++....+|.++++.|.+.|
T Consensus 70 ~~~v~vd~ga~~~l~~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~~ia~G~~~~ss~e~~~~~~G~~v~v~h~~~D--- 146 (153)
T 1q7h_A 70 RNIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGEVMATKRGKAARIIHFPGD--- 146 (153)
T ss_dssp SSEEEECTTTHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTSCEEEEEEESSCHHHHHHHCCSEEEEEEECTTS---
T ss_pred CCEEEECHhHHHHHHcCCCcCccccCcccCceeCCCEEEEEECCCCEEEEEEEecCHHHHHhcCCCeEEEEEEEcCC---
Confidence 58999999999999999999999999888899999999999999999999999999999988889999999999988
Q ss_pred cccCcCCCC
Q psy1178 134 YPRKWGLGP 142 (144)
Q Consensus 134 ~~~~w~~~~ 142 (144)
..|++||
T Consensus 147 --~lw~~~~ 153 (153)
T 1q7h_A 147 --ELIRAFP 153 (153)
T ss_dssp --HHHHHCC
T ss_pred --EEEEecC
Confidence 8999886
No 10
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=99.48 E-value=2.8e-14 Score=101.45 Aligned_cols=83 Identities=24% Similarity=0.523 Sum_probs=77.7
Q ss_pred CEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcC-CCCEEEEEEeecChhhHhcCCCceEEEEEEEeecCCc
Q psy1178 55 KRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVST-KGEAVALALAQMTTSTMATCDHGVVAKIKRVIMDRDT 133 (144)
Q Consensus 55 p~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~-~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~~~~ 133 (144)
|.|.|+++++++|.+|++|+++|+....+.+..|+.|.|++. +|.++|+|.+.++++|+....+|.+++..|.+.|
T Consensus 95 ~~v~vd~gA~~~l~~GasL~~~GV~~~~g~f~~Gd~V~v~~~~~g~~iavG~~~~ss~e~~~~~kG~av~~~H~~~D--- 171 (179)
T 3d79_A 95 RRVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFVVEEKYGRPLAIGIALMSGKVMKEKNRGKAVKVIHHARD--- 171 (179)
T ss_dssp TEEEECGGGHHHHHTTCCEEGGGEEEECTTCCTTCEEEEEETTTCCEEEEEEESSCHHHHHHCSSSEEEEEEEETTS---
T ss_pred CEEEECccHHHHHhCCCCcCCCcEEEccCCccCCCEEEEEECCCCeEEEEEEEEcCHHHHHhcCCceEEEEEEEeCC---
Confidence 899999999999999999999999988889999999999987 7899999999999999998889999999999988
Q ss_pred cccCcCCCC
Q psy1178 134 YPRKWGLGP 142 (144)
Q Consensus 134 ~~~~w~~~~ 142 (144)
..|.+++
T Consensus 172 --~Lw~~~~ 178 (179)
T 3d79_A 172 --KIWEVTA 178 (179)
T ss_dssp --HHHHHHC
T ss_pred --EEEEeec
Confidence 8998765
No 11
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A
Probab=99.33 E-value=4.9e-13 Score=95.64 Aligned_cols=94 Identities=21% Similarity=0.320 Sum_probs=80.7
Q ss_pred ccccccccc---Cc--CC-EEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcC-CCCEEEEEEeecChhhH--
Q psy1178 43 VIRPLEGLL---VG--HK-RIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVST-KGEAVALALAQMTTSTM-- 113 (144)
Q Consensus 43 ~LlP~~~aL---~~--lp-~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~-~g~~laig~~~~~~~~~-- 113 (144)
.++|.-+.+ +. +| .|.+++++.+++.+|++|+++|+....+.|..|+.|.|++. +|+.+|+|.+.++++|+
T Consensus 75 ~l~PTl~~l~~~p~~~l~g~v~vd~gA~~al~~GasLl~~GV~~~~g~f~~Gd~V~I~~~~~g~~iA~G~~~~ss~ei~~ 154 (187)
T 2cx0_A 75 RIYPTLQCLKAFGVDWLKGVVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMVGVAEVDSSALEK 154 (187)
T ss_dssp CEEECHHHHHHHCSTTSSEEEEECHHHHHHHHHTCCEEGGGEEEEEECCCTTCEEEEEETTTTEEEEEEEESSCHHHHHH
T ss_pred eEEEEHHHHHhCCcccCCcEEEECccHHHHHhCCCCcCCCccEeCCCCcCCCCEEEEEECCCCeEEEEEEEecCHHHHhH
Confidence 466665544 23 37 89999999999999999999999888889999999999998 68999999999999999
Q ss_pred --hcCCCceEEEEEEEeecCCccccCcCCC
Q psy1178 114 --ATCDHGVVAKIKRVIMDRDTYPRKWGLG 141 (144)
Q Consensus 114 --~~~~~g~~v~~~rv~~~~~~~~~~w~~~ 141 (144)
....+|.++++.|.+.| ..|.++
T Consensus 155 ~~~~~~kG~av~v~H~~gD-----~Lw~~~ 179 (187)
T 2cx0_A 155 LYREKARGRAVRRVHRLGD-----ALWELA 179 (187)
T ss_dssp HHHHTCCSEEEEEEEETTS-----HHHHHH
T ss_pred HHhccCCceEEEEEEEcCC-----eEEhhh
Confidence 66789999999999987 788654
No 12
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=99.04 E-value=6.9e-10 Score=91.30 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=69.9
Q ss_pred CEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEe
Q psy1178 55 KRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVI 128 (144)
Q Consensus 55 p~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~ 128 (144)
+.|+||++++++|.+|++|+++|++...++|..||.|.|++.+|+++|+|.+.++++|+....+|.+|++.|-.
T Consensus 508 g~v~VD~gA~~av~~GasLl~~GV~~~~g~f~~Gd~V~V~~~~g~~ia~G~a~~ss~ei~~~~kG~aV~v~~~~ 581 (582)
T 1iq8_A 508 MRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREMIVFQYGRAVKVRKGV 581 (582)
T ss_dssp TEEEECTTTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCCSSEEEEEEEEC
T ss_pred CEEEECchHHHHHhcCCCcCCCceEecCCCcCCCCEEEEEeCCCCEEEEEEEeeCHHHHHhcCCceEEEEEecc
Confidence 69999999999999999999999999989999999999999999999999999999999999999999988753
No 13
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=98.87 E-value=4.6e-09 Score=80.16 Aligned_cols=70 Identities=24% Similarity=0.404 Sum_probs=60.9
Q ss_pred CEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEeecC
Q psy1178 55 KRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMDR 131 (144)
Q Consensus 55 p~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~~ 131 (144)
|+|.|++ ++.+| +|++||++...+++..|+.|.| .+|+++|+|++.+++++|...++|.+++++|++++.
T Consensus 231 ~~V~Vd~----~v~~G-~v~~pGv~~~~~~i~~gd~V~V--~~g~~vavG~a~ms~~em~~~~kG~aV~v~~~~~~~ 300 (306)
T 2q07_A 231 YTVEIGD----FEVKG-TIFAGGVLRADEKIRPNDVVVF--HNSRIFGVGLAAMSGKEMAGSEKGIAINVKRKFSEG 300 (306)
T ss_dssp SEEEECS----SCCCS-EEEGGGEEEECTTCCTTCEEEE--ECSSCEEEEEESSCHHHHSCC--CEEEEEEEEEC--
T ss_pred CEEEEcc----cccCC-ceeCCeeEeCCCCcCCCCEEEE--ECCEEEEEEEEeeCHHHHhhcCCceEEEEEEEccCC
Confidence 7899988 77799 9999999988888999999988 568999999999999999999999999999999863
No 14
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=98.39 E-value=6.4e-07 Score=69.97 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=59.0
Q ss_pred cCcCCEEEEChhhHHhhh-CCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHh
Q psy1178 51 LVGHKRIILKDSAVNAVC-YGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMA 114 (144)
Q Consensus 51 L~~lp~V~l~~~~~~~l~-~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~ 114 (144)
+..-+.|.||+++.++|. +|.+|+++|+....+.|..||.|.|++++|+.+|+|.+.++++|+.
T Consensus 272 ~~~~G~v~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~V~i~~~~g~~ia~G~~~y~s~e~~ 336 (367)
T 2j5v_A 272 APPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALR 336 (367)
T ss_dssp CCCSCEEEECHHHHHHHHHHCCCBCGGGEEEEESCCCTTCEEEEEETTCCEEEEEECSSCHHHHH
T ss_pred cCCCCEEEECcCHHHHHHhCCCccCCcccEEEECcccCCCEEEEECCCCCEEEEEEecCCHHHHH
Confidence 344578999999999996 7999999999999999999999999999999999999999999985
No 15
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=98.21 E-value=2.6e-06 Score=59.46 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=53.2
Q ss_pred EEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEeecCCccc
Q psy1178 56 RIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMDRDTYP 135 (144)
Q Consensus 56 ~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~~~~~~ 135 (144)
.|.|++.+.+.+.+|+.++.+++...+ +..++.|.|++.++.++|+|.+..+ ++|.++++ +.+.|.|-
T Consensus 97 kV~V~~~ae~~flyG~dV~k~gI~~~~--~~~~~~VvV~~~~~~pLG~G~a~~s-------~~gkvv~n---~~dvGeYL 164 (166)
T 2p38_A 97 YVILGPKASFLFTTGKDAPKEAVREIK--WQGSKRVVVLNDLGDIIGIGLINPK-------SDRRFIKN---LKDVGEFL 164 (166)
T ss_dssp EEEECHHHHHHHHTTCCBCGGGEEEEE--CSSCSEEEEECTTSCEEEEEEECTT-------CSTTSEEE---EEC-----
T ss_pred EEEECCcceEeeecCCCcchhcceEEe--ecCCCEEEEEECCCcEEEEEEEEEC-------CCCEEEEE---cccceeee
Confidence 799999999999999999999987765 6778899999999999999999875 56765543 34555553
No 16
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=98.19 E-value=9.1e-06 Score=57.60 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=64.9
Q ss_pred CEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCC-CceEEEEEEEeecCCc
Q psy1178 55 KRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCD-HGVVAKIKRVIMDRDT 133 (144)
Q Consensus 55 p~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~-~g~~v~~~rv~~~~~~ 133 (144)
-+|.|++.....+..|+.+...++...++++..++.|.|++.++.+||+|++..|++++...+ .+.++ .-..|.|+
T Consensus 95 ~kV~Vk~~~E~~flyG~nVfk~~V~~i~e~i~~~~~VvV~n~~d~pLG~G~a~~s~~e~~~~~~~~~vv---~~q~D~Ge 171 (188)
T 1sqw_A 95 YKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVV---FHQADIGE 171 (188)
T ss_dssp CEEEECHHHHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHSCTTSEEE---EEEEEGGG
T ss_pred cEEEECCCceeeEEeccchhHHhhhhcCCCCCCCCEEEEEeCCCCEEEEEEeecCHHHHHhcCCCcEEE---EEccccee
Confidence 479999999999999999999998888888889999999999999999999999999988766 44322 33346666
Q ss_pred cc
Q psy1178 134 YP 135 (144)
Q Consensus 134 ~~ 135 (144)
|-
T Consensus 172 YL 173 (188)
T 1sqw_A 172 YV 173 (188)
T ss_dssp TC
T ss_pred ee
Confidence 64
No 17
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=94.55 E-value=0.066 Score=41.56 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=44.3
Q ss_pred CCEEEEChhhHHhhhCCce-ecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEee
Q psy1178 54 HKRIILKDSAVNAVCYGAQ-IMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQ 107 (144)
Q Consensus 54 lp~V~l~~~~~~~l~~G~~-l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~ 107 (144)
++.|.|.....+++++|-+ ++...+....+.+..|+.|.|++.+|+++|+|-+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~pwv~~~~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~~ 56 (396)
T 3c0k_A 2 SVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYS 56 (396)
T ss_dssp CCEEEECTTCCHHHHTTCSEEEGGGEEEEESCCCTTCEEEEECTTCCEEEEEEEC
T ss_pred ceEEEECchHHHHHhcCCCeEEhhHhhcccCCCCCCCEEEEEcCCCCEEEEEEEC
Confidence 4679999998999999987 56666654555678899999999999999999875
No 18
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=94.20 E-value=0.11 Score=40.20 Aligned_cols=54 Identities=24% Similarity=0.392 Sum_probs=42.3
Q ss_pred CCEEEEChhhHHhhhCCcee-cCCCeecccCCCCCCCEEEEEcCCCCEEEEEEee
Q psy1178 54 HKRIILKDSAVNAVCYGAQI-MLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQ 107 (144)
Q Consensus 54 lp~V~l~~~~~~~l~~G~~l-~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~ 107 (144)
++.|.|++...++|++|.+. +...+....+.+..|+.|.|++.+|+++|+|-+.
T Consensus 1 ~~~v~l~~~~~~~l~~g~pw~yrn~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~~ 55 (396)
T 2as0_A 1 MARVVVDAQAARAIGKGAMIVFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFAN 55 (396)
T ss_dssp CCEEEECHHHHHHHHTTCCEEEGGGEEEEESCCCTTCEEEEEETTCCEEEEEEEC
T ss_pred CceEEECHhHHHHHHcCCcEEEHHHccccCCCCCCCCEEEEEcCCCCEEEEEEEC
Confidence 35799999999999999764 4444433345567899999999999999999875
No 19
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=92.44 E-value=0.23 Score=38.81 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=40.4
Q ss_pred cCCEEEEChhhHHhhhCCcee-cCCCeecccCCCCCCCEEEEEcCCCCEEEEEEee
Q psy1178 53 GHKRIILKDSAVNAVCYGAQI-MLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQ 107 (144)
Q Consensus 53 ~lp~V~l~~~~~~~l~~G~~l-~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~ 107 (144)
.++.|.|+....+++++|-+. +...+.... ..|+.|.|++.+|+|+|+|-+.
T Consensus 4 ~~~~~~l~~~~~~~~~~g~pwi~~~~i~~~~---~~G~~v~v~~~~g~~lg~g~~~ 56 (393)
T 4dmg_A 4 PVLRLVVKAGKERKLRNFYPNLYRDEIAAPP---EGVGVAEAVDAEGHFLAVGYYD 56 (393)
T ss_dssp CCCEEEECTTCCHHHHTTCCEECGGGEEECC---SSSEEEEEECTTCCEEEEEEEC
T ss_pred cCcEEEECcchHHHHhcCCCEEEHHHhcCcC---CCCCEEEEEcCCCCEEEEEEEC
Confidence 378999999999999999865 333343322 2388999999999999999885
No 20
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=79.20 E-value=2.4 Score=32.63 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=37.5
Q ss_pred CCEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEee
Q psy1178 54 HKRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQ 107 (144)
Q Consensus 54 lp~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~ 107 (144)
+|.|.|.....+++.+|.+.--.+-..... ..|+.|.+++.+|+++|+|-+.
T Consensus 1 ~~~~~l~~~~~~~~~~~~pw~y~n~~~~~~--~~g~~v~v~~~~g~~l~~g~~~ 52 (385)
T 2b78_A 1 MIKLMVGSFAEKKLKRGVQLLSSRDYPNLN--LDNQVVQLYSDADIFLGTAYLS 52 (385)
T ss_dssp CEEEECCHHHHHHHHHTCCEEEGGGSTTCC--CCSEEEEEECTTCCEEEEEEEE
T ss_pred CceEEECchHHHHHhcCCCeEEHHHhCCCC--CCCCEEEEEcCCCCEEEEEEEC
Confidence 367899999999999998653222111100 5688899999889999999875
No 21
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=74.52 E-value=6.6 Score=31.27 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=33.6
Q ss_pred CCEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEee
Q psy1178 54 HKRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQ 107 (144)
Q Consensus 54 lp~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~ 107 (144)
.+.|.++.+++.+..+|..|..++ ....| .|.|. .+|..+|.|+..
T Consensus 411 ~~~~~l~~~~~~~yL~Ge~i~~~~------~~~~G-~vlv~-~~g~pLG~gK~~ 456 (479)
T 2frx_A 411 MNAFELTPQEAEEWYRGRDVYPQA------APVAD-DVLVT-FQHQPIGLAKRI 456 (479)
T ss_dssp SSEEECCHHHHHHHHTTCCCCCSS------CCSCS-EEEEE-ETTEEEEEEECT
T ss_pred CcEEECCHHHHHHHhcCCCCcCCC------CCCCC-EEEEE-ECCEeeEEEEee
Confidence 467899999999999999987643 11345 55554 478999999873
No 22
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=74.46 E-value=4.6 Score=30.87 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=36.7
Q ss_pred EEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEee
Q psy1178 56 RIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQ 107 (144)
Q Consensus 56 ~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~ 107 (144)
.|.|+....+++++|.+.--.+-... +....| .|.+.+ +|+++|+|-+.
T Consensus 2 ~~~l~~~~~~~~~~~~p~~yrn~~~~-~~~~~g-~v~v~~-~g~~l~~g~~~ 50 (382)
T 1wxx_A 2 RIQVNAKGAARLLSRHLWVFRRDVVS-GPETPG-LYPVYW-GRRFLALALYN 50 (382)
T ss_dssp CEEECHHHHHHHHTTCCEECGGGEEE-CCSSCE-EEEEEE-TTEEEEEEEEC
T ss_pred eEEECccHHHHHhcCCCeEEhhhhcc-CCCCCe-EEEEEE-CCEEEEEEEEC
Confidence 48899999999999987533222222 456788 899988 89899999875
No 23
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=72.83 E-value=9.1 Score=30.37 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=40.5
Q ss_pred CEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEeecCCcc
Q psy1178 55 KRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMDRDTY 134 (144)
Q Consensus 55 p~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~~~~~ 134 (144)
+.+.++.+++.+..+|..|..+. ..| .|.|. .+|..+|.|+.. |..+| +.|
T Consensus 399 ~~~~l~~~~~~~yl~ge~i~~~~--------~~g-~~lv~-~~g~~lG~~k~~-----------~~~~k--------N~y 449 (456)
T 3m4x_A 399 PCLPITQKEWQSYTAGETFQRDG--------NQG-WVLLV-LDKIPVGFGKQV-----------KGTVK--------NFF 449 (456)
T ss_dssp CEEEECHHHHHHHHHTCCEECSC--------CCE-EEEEE-ETTEEEEEEEEE-----------TTEEE--------ECS
T ss_pred cEEEcCHHHHHHHhCCCCcccCC--------CCC-EEEEE-ECCEeEEEEEee-----------CCEEe--------cCC
Confidence 57899999989999999987643 134 44443 479999999874 33343 448
Q ss_pred ccCcCC
Q psy1178 135 PRKWGL 140 (144)
Q Consensus 135 ~~~w~~ 140 (144)
|+.|-+
T Consensus 450 p~~wR~ 455 (456)
T 3m4x_A 450 PKGLRF 455 (456)
T ss_dssp CGGGCC
T ss_pred Chhhcc
Confidence 899864
No 24
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=55.64 E-value=27 Score=21.40 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=45.0
Q ss_pred cCCEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEeecCC
Q psy1178 53 GHKRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIMDRD 132 (144)
Q Consensus 53 ~lp~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~~~~ 132 (144)
.+.+..++=...-.+.-|.-|.... ..++.|.++- +|+.+|.|+.... +...+++..+++....
T Consensus 26 ~LG~~~itl~ell~L~~GdVI~Ld~--------~~~~~v~i~v-ng~~i~~Ge~g~~-------~~~~aVrI~~i~~~~~ 89 (96)
T 3uep_A 26 EVGRQILDWHTLTSLEPGSLIDLTT--------PVDGEVRLLA-NGRLLGHGRLVEI-------QGRLGVRIERLTEVTI 89 (96)
T ss_dssp EESCCEEEHHHHHHCCTTCEEEEEE--------ESSCEEEEEE-TTEEEEEEEEEEE-------TTEEEEEEEEECCCCC
T ss_pred EEeceeeeHHHHhcCCCCCEEEeCC--------CCCCcEEEEE-CCEEEEEEEEEEE-------CCEEEEEEEEecCchh
Confidence 3566677777788888998876542 1245777764 7899999987542 3445788888876654
Q ss_pred c
Q psy1178 133 T 133 (144)
Q Consensus 133 ~ 133 (144)
.
T Consensus 90 r 90 (96)
T 3uep_A 90 S 90 (96)
T ss_dssp C
T ss_pred H
Confidence 3
No 25
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=38.71 E-value=60 Score=19.13 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=42.1
Q ss_pred cCCEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEe
Q psy1178 53 GHKRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVI 128 (144)
Q Consensus 53 ~lp~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~ 128 (144)
.+.+..++-...-.+..|.-+.... ..++.+.++- +|+++|.|+.... +...+++..+++
T Consensus 22 ~Lg~~~itl~ell~L~~GdVi~Ld~--------~~~e~v~i~v-ng~~~~~ge~g~~-------~~~~avrI~~~~ 81 (84)
T 1o9y_A 22 RCGELRLTLAELRRLDAGTILEVTG--------ISPGHATLCH-GEQVVAEGELVDV-------EGRLGLQITRLV 81 (84)
T ss_dssp EEEEEEEEHHHHHTCCTTCEEEECS--------SCTTEEEEEE-TTEEEEEEEEEEE-------TTEEEEEEEEEC
T ss_pred EEecceeEHHHHhcCCCCCEEEeCC--------CCCCCEEEEE-CCEEEEEEEEEEE-------CCEEEEEEEEec
Confidence 4677888888888899998876643 2345777774 7899999987542 334467766665
No 26
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=31.43 E-value=30 Score=15.48 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=9.8
Q ss_pred EEEEcCCCCEEE
Q psy1178 91 IVIVSTKGEAVA 102 (144)
Q Consensus 91 v~i~~~~g~~la 102 (144)
-.|||.+|++++
T Consensus 7 s~IYD~~g~~i~ 18 (26)
T 2v2f_A 7 SKIYDNKNQLIA 18 (26)
T ss_pred CEEEeCCCCEee
Confidence 478999998876
No 27
>1hf2_A MINC, septum site-determining protein MINC; cell division protein, FTSZ, bacterial cell division, beta helix; 2.2A {Thermotoga maritima} SCOP: b.80.3.1 c.102.1.1
Probab=26.72 E-value=1.3e+02 Score=20.85 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=19.4
Q ss_pred HhhhCCceecCCCeecccCCCCCCCEEE
Q psy1178 65 NAVCYGAQIMLPGVLRYEDGIEMDEEIV 92 (144)
Q Consensus 65 ~~l~~G~~l~~~~~~~~~~~~~~~~~v~ 92 (144)
+-|+.||.|+.++-+-+-+++.+|..|.
T Consensus 106 ~~vRSGQ~I~~~gdlvVlGdVn~GAeVi 133 (210)
T 1hf2_A 106 RNIRSGQTVVHSGDVIVFGNVNKGAEIL 133 (210)
T ss_dssp SCBCTTEEEEESSCEEESSCBCTTCEEE
T ss_pred CcccCCCEEEecCCEEEEccCCCCCEEE
Confidence 4568899998877544556777776544
No 28
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=25.72 E-value=38 Score=25.09 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=19.2
Q ss_pred CccEeeeeecccccCce-------eeHHHHHHH
Q psy1178 2 IELRRNRSGIQSEEDGL-------VTLHDIKDA 27 (144)
Q Consensus 2 ~~LrRt~~g~F~~~~~~-------vtL~~l~~~ 27 (144)
..|+|+++|++.++ +. +|-+|+..+
T Consensus 201 ~~L~R~~iG~l~L~-~L~~G~~R~Lt~~Ei~~l 232 (290)
T 3dh3_A 201 KKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 (290)
T ss_dssp EEEEEEEETTEECT-TCCTTCEEECCHHHHHHH
T ss_pred EEeEEEEECCEecC-CCCCCCcEECCHHHHHHH
Confidence 46999999999998 44 566777654
No 29
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=24.95 E-value=1.2e+02 Score=18.27 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=41.8
Q ss_pred cCCEEEEChhhHHhhhCCceecCCCeecccCCCCCCCEEEEEcCCCCEEEEEEeecChhhHhcCCCceEEEEEEEee
Q psy1178 53 GHKRIILKDSAVNAVCYGAQIMLPGVLRYEDGIEMDEEIVIVSTKGEAVALALAQMTTSTMATCDHGVVAKIKRVIM 129 (144)
Q Consensus 53 ~lp~V~l~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~v~i~~~~g~~laig~~~~~~~~~~~~~~g~~v~~~rv~~ 129 (144)
.+.+..++-...-.+.-|.-|.... ..++.+.++- +|+.+|.|+.... +...+++...++.
T Consensus 26 ~Lg~~~ltl~ell~L~~GdVI~Ld~--------~~~~~v~v~v-~g~~i~~G~~g~~-------~~~~aVrI~~~i~ 86 (96)
T 1o6a_A 26 ELGRTRMTLKRVLEMIHGSIIELDK--------LTGEPVDILV-NGKLIARGEVVVI-------DENFGVRITEIVS 86 (96)
T ss_dssp EEEEEEEEHHHHHHCCTTCEEEEEE--------ETTCCEEEEE-TTEEEEEEEEEEE-------TTEEEEEEEEECC
T ss_pred EEECcEeEHHHHhCCCCCCEEEeCC--------CCCCcEEEEE-CCEEEEEEEEEEE-------CCEEEEEEEEecC
Confidence 4577888888888999998876542 1234566663 7899999987542 3344677777663
No 30
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.06 E-value=34 Score=19.18 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=12.4
Q ss_pred ecccccCceeeHHHHHH
Q psy1178 10 GIQSEEDGLVTLHDIKD 26 (144)
Q Consensus 10 g~F~~~~~~vtL~~l~~ 26 (144)
||.++.|..||+++..+
T Consensus 1 ~~~dlsDgpit~qeyle 17 (63)
T 2w6a_A 1 GPLGSSDGAVTLQEYLE 17 (63)
T ss_dssp CCCC--CCSSCHHHHHH
T ss_pred CCCcccCCcchHHHHHH
Confidence 67888778899998865
No 31
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=23.80 E-value=1.5e+02 Score=19.15 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=10.7
Q ss_pred CCEEEEChhhHHhh
Q psy1178 54 HKRIILKDSAVNAV 67 (144)
Q Consensus 54 lp~V~l~~~~~~~l 67 (144)
.|.|.++++.++++
T Consensus 52 ~~~v~inp~dA~~l 65 (146)
T 2ki8_A 52 VNYAEINEEDWNAL 65 (146)
T ss_dssp SSEEEECHHHHHHH
T ss_pred CCEEEECHHHHHHc
Confidence 47788888877766
Done!