BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11780
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 40/228 (17%)
Query: 38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
NR P F + + + + E DTP G+ + +L D D D L FGV G
Sbjct: 4 NRLP-FFTNHFFDTYLLISE--DTPVGSSVTQLLARDMDNDPLVFGVSGE---------- 50
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
+ F++ GV+ L LD E K V+ S +D
Sbjct: 51 ---------------EASRFFAVEP--DTGVVWLRQPLDRETK-----SEFTVEFSVSDH 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
+ T + ++V DV D P F R+ E+ PVGT + V A D D G +LYS
Sbjct: 89 QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS 148
Query: 218 ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKT 265
S F ID G + ++ELD E AY L + T++ KT
Sbjct: 149 FQPPSP-FFAIDSARGIVTVIQELDYEVTQ----AYQLTVNATDQDKT 191
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 38/157 (24%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-SGSQGIFDIDPNTGNIFTLKELDRESA 246
+SED PVG+SV Q+ A D D N+ +++ +S + F ++P+TG ++ + LDRE+
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITD 306
+ + +E V++ + +V I + D
Sbjct: 77 SE----FTVEFSVSDHQGVI------------------------------TRKVNIQVGD 102
Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV 343
VND PTF + Y I EN+ + TP+ + P +
Sbjct: 103 VNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDL 139
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 40/228 (17%)
Query: 38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
NR P F + + + + E DTP G+ + +L D D D L FGV G
Sbjct: 3 NRLP-FFTNHFFDTYLLISE--DTPVGSSVTQLLARDMDNDPLVFGVSGE---------- 49
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
+ F++ GV+ L LD E K V+ S +D
Sbjct: 50 ---------------EASRFFAVEP--DTGVVWLRQPLDRETK-----SEFTVEFSVSDH 87
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
+ T + ++V DV D P F R+ E+ PVGT + V A D D G +LYS
Sbjct: 88 QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS 147
Query: 218 ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKT 265
S F ID G + ++ELD E AY L + T++ KT
Sbjct: 148 FQPPSP-FFAIDSARGIVTVIQELDYEVTQ----AYQLTVNATDQDKT 190
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 38/157 (24%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-SGSQGIFDIDPNTGNIFTLKELDRESA 246
+SED PVG+SV Q+ A D D N+ +++ +S + F ++P+TG ++ + LDRE+
Sbjct: 19 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 75
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITD 306
+ + +E V++ + +V I + D
Sbjct: 76 SE----FTVEFSVSDHQGVI------------------------------TRKVNIQVGD 101
Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV 343
VND PTF + Y I EN+ + TP+ + P +
Sbjct: 102 VNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDL 138
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 40/228 (17%)
Query: 38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
NR P F + + + + E DTP G+ + +L D D D L FGV G
Sbjct: 4 NRLP-FFTNHFFDTYLLISE--DTPVGSSVTQLLARDMDNDPLVFGVPGE---------- 50
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
+ F++ GV+ L LD E K V+ S +D
Sbjct: 51 ---------------EASRFFAVEP--DTGVVWLRQPLDRETK-----SEFTVEFSVSDH 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
+ T + ++V DV D P F R+ E+ PVGT + V A D D G +LYS
Sbjct: 89 QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS 148
Query: 218 ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKT 265
S F ID G + ++ELD E AY L + T++ KT
Sbjct: 149 FQPPSP-FFAIDSARGIVTVIQELDYEVTQ----AYQLTVNATDQDKT 191
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 38/157 (24%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-SGSQGIFDIDPNTGNIFTLKELDRESA 246
+SED PVG+SV Q+ A D D N+ +++ + + F ++P+TG ++ + LDRE+
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITD 306
+ + +E V++ + +V I + D
Sbjct: 77 SE----FTVEFSVSDHQGVI------------------------------TRKVNIQVGD 102
Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV 343
VND PTF + Y I EN+ + TP+ + P +
Sbjct: 103 VNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDL 139
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G I LD E + Y L AVDR N R + +VKVQD+ D PPEF+
Sbjct: 56 GNIHATKTLDREERAQYTLMAQAVDRDTN-RPLEPPSEFIVKVQDINDNPPEFLHEIYHA 114
Query: 187 RVSEDVPVGTSVLQVKAVDGD---RGINNKILYSISSGSQGIFDIDPNTGNIFT-LKELD 242
V E VGTSV+QV A D D G + K++YSI G Q F ++ TG I T L +D
Sbjct: 115 NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-QPYFSVEAQTGIIRTALPNMD 173
Query: 243 RES 245
RE+
Sbjct: 174 REA 176
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 32/130 (24%)
Query: 205 DGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEES 263
D D G N I Y +S G+ IF ID +GNI K LDRE Y L + +
Sbjct: 28 DIDSGDGN-IKYILSGEGAGTIFVIDDKSGNIHATKTLDREE----RAQYTLMAQAVDRD 82
Query: 264 KTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEI 323
++ ++P +E + + D+ND P F Y A +
Sbjct: 83 ----------------------TNRPLEPP----SEFIVKVQDINDNPPEFLHEIYHANV 116
Query: 324 HENSVINTPV 333
E S + T V
Sbjct: 117 PERSNVGTSV 126
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 91/228 (39%), Gaps = 40/228 (17%)
Query: 38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
NR P F + + + + E DTP G+ + +L D D D L FGV G
Sbjct: 4 NRLP-FFTNHFFDTYLLISE--DTPVGSSVTQLLARDMDNDPLVFGVSGE---------- 50
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
+ F++ GV+ L LD E K V+ S +D
Sbjct: 51 ---------------EASRFFAVEP--DTGVVWLRQPLDRETK-----SEFTVEFSVSDH 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
+ T + ++V V D P F R+ E+ PVGT + V A D D G +LYS
Sbjct: 89 QGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS 148
Query: 218 ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKT 265
S F ID G + ++ELD E AY L + T++ KT
Sbjct: 149 FQPPSP-FFAIDSARGIVTVIQELDYEVTQ----AYQLTVNATDQDKT 191
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 38/157 (24%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-SGSQGIFDIDPNTGNIFTLKELDRESA 246
+SED PVG+SV Q+ A D D N+ +++ +S + F ++P+TG ++ + LDRE+
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITD 306
+ + +E V++ + +V I +
Sbjct: 77 SE----FTVEFSVSDHQGVI------------------------------TRKVNIQVGG 102
Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV 343
VND PTF + Y I EN+ + TP+ + P +
Sbjct: 103 VNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDL 139
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 85 QGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYEN---KF 141
Q D+I I+ + + + + G F+I +G ++KL +LD+E+
Sbjct: 232 QKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSG--IVKLAKELDFEDLRQPH 289
Query: 142 LYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEF-VAVSSVTRVSEDVPVGTSVLQ 200
+Y L + A + S + + + ++V DV D P+F + V ED+P+GTS+L+
Sbjct: 290 VYSLIVTATEDSGG---FSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILR 346
Query: 201 VKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVT 260
VKA+D D G N +I Y +S F +D N G I K+LD NN AY E VT
Sbjct: 347 VKAMDSDSGSNAEIEYLVSDDH---FAVDSN-GIIVNNKQLD----ADNNNAY-YEFIVT 397
Query: 261 EESKTVQP 268
+ K P
Sbjct: 398 AKDKGEPP 405
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 45/241 (18%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSN--NDRRNTGTAAILVKVQDVEDQPPEFVAVSS 184
GV++ G ++ Y L + A D++ +DRR T + + + + P+F S
Sbjct: 166 GVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGK-RAPQFYMPSY 224
Query: 185 VTRVSEDVPVGTSVLQVKAVD-GDRGINNKILYSISSGSQG--IFDIDPNTGNIFTLKEL 241
+ E+ + ++ +KA DR +I Y++ + QG F+I P +G + KEL
Sbjct: 225 EAEIPENQKKDSDIISIKAKSFADR----EIRYTLKAQGQGAGTFNIGPTSGIVKLAKEL 280
Query: 242 DRESATSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVT 301
D E + Y L + TE+S + ++T
Sbjct: 281 DFEDLRQPH-VYSLIVTATEDSGGF----------------------------STSVDLT 311
Query: 302 IIITDVNDETPTFRSPRYVAE-IHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEG 360
I +TDVND P F P Y A + E+ + T + + + D D G N + +
Sbjct: 312 IRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRV-----KAMDSDSGSNAEIEYLVSD 366
Query: 361 D 361
D
Sbjct: 367 D 367
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 93/241 (38%), Gaps = 51/241 (21%)
Query: 102 KVVYHLENVDGDEKDLFSIS------TVNGKGVIKLIGKLDYEN----KFLYQLKILAVD 151
K V+ LE +K+ F I TV G +++ K DYE K + I+
Sbjct: 26 KSVFQLEK--ETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM 83
Query: 152 RSNNDRRNTGTAAILVKVQDVEDQPPEFV--AVSSVTRVSEDVPVGTSVLQVKAVDGDRG 209
N + T +++ V+DV D+PP F+ + V + P T V ++A D D
Sbjct: 84 GHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD 143
Query: 210 INNKILYSISSGSQGIFDIDPNTGNIFT----LKELDRESATSNNGAYILEIKVTEESKT 265
+N + + + G F++D +G + T L +LD E Y+L +K +++
Sbjct: 144 -HNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME--------YVLYVKAEDQNGK 194
Query: 266 VQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHE 325
V + Q P + + P F P Y AEI E
Sbjct: 195 VD-------------------DRRFQSTPEERLSIV-----GGKRAPQFYMPSYEAEIPE 230
Query: 326 N 326
N
Sbjct: 231 N 231
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 117 LFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQP 176
+F I+ + G I I +LD E K Y L AVD N + + ++KVQD+ D
Sbjct: 47 IFQINDITGD--IHAIKRLDREEKAEYTLTAQAVDFETN-KPLEPPSEFIIKVQDINDNA 103
Query: 177 PEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSISSGSQGIFDIDPNTG 233
PEF+ V E +GTSV V A D D G + K++YSI G Q F I+P T
Sbjct: 104 PEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG-QPYFSIEPETA 162
Query: 234 NIFT-LKELDRES 245
I T L +DRE+
Sbjct: 163 IIKTALPNMDREA 175
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 135 LDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPV 194
+D E K Y + I A D + +GT + V + DV D PP+F V EDV +
Sbjct: 171 MDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVL 230
Query: 195 GTSVLQVKAVDGDRGINNKILYSISSG-SQGIFDIDPNT----GNIFTLKELDRESATSN 249
GT++ +VKA D D G N + Y I G +F+I + G I K LD E+ S
Sbjct: 231 GTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKS- 289
Query: 250 NGAYILEIKVT 260
Y L+++
Sbjct: 290 ---YTLKVEAA 297
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 35/127 (27%)
Query: 211 NNKILYSISSGSQG-IFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVT--EESKTVQ 267
+ KI Y +S G IF I+ TG+I +K LDRE Y L + E +K ++
Sbjct: 32 SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE----KAEYTLTAQAVDFETNKPLE 87
Query: 268 PAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENS 327
P +E I + D+ND P F + Y A + E S
Sbjct: 88 PP----------------------------SEFIIKVQDINDNAPEFLNGPYHATVPEMS 119
Query: 328 VINTPVT 334
++ T VT
Sbjct: 120 ILGTSVT 126
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 110 VDGDEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVD-------RSNNDRRNT 160
+DGD LF I++ GVI+L LD+E K Y LK+ A + S ++T
Sbjct: 255 IDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDT 314
Query: 161 GTAAILVK 168
T I+V+
Sbjct: 315 ATVKIVVE 322
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 2/167 (1%)
Query: 101 LKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNT 160
K VY + N D D++ + G++K LD+E K Y L + + +
Sbjct: 255 WKAVYTVVN-DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLV 313
Query: 161 GTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISS 220
+ A + ++ P F+ V ED VG + A + D ++ KI Y I
Sbjct: 314 PSTATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWR 373
Query: 221 GSQGIFDIDPNTGNIFTLKELDRESATS-NNGAYILEIKVTEESKTV 266
+ +I+P TG IFT E+DRE A N Y+ I T++ +
Sbjct: 374 DTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPI 420
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 81/211 (38%), Gaps = 42/211 (19%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRESATSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAK 297
LDRES + Y L ++ + +K V
Sbjct: 176 TSGLDRESYPT----YTLVVQAAD----------------LQGEGLSTTAKAV------- 208
Query: 298 TEVTIIITDVNDETPTFRSPRYVAEIHENSV 328
I + D+ND P F Y ++ EN V
Sbjct: 209 ----ITVKDINDNAPVFNPSTYQGQVPENEV 235
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 116 DLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQ 175
DLF I+ G I+ +LD E K +Y L+ AV+R R + ++K+ D+ D
Sbjct: 46 DLFIINENTGD--IQATKRLDREEKPVYILRAQAVNRRTG-RPVEPESEFIIKIHDINDN 102
Query: 176 PPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSISSGSQGIFDIDPNT 232
P F V E VGT V+QV A D D G + K++YSI G Q F ++ T
Sbjct: 103 EPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG-QPYFSVESET 161
Query: 233 GNIFT-LKELDRES 245
G I T L +DRE+
Sbjct: 162 GIIKTALLNMDREN 175
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 32/130 (24%)
Query: 205 DGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEES 263
D DRG + + Y +S G+ +F I+ NTG+I K LDRE YIL +
Sbjct: 27 DQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKP----VYILRAQAVNR- 80
Query: 264 KTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEI 323
+T +P V+P ++E I I D+ND P F Y A +
Sbjct: 81 RTGRP---------------------VEP----ESEFIIKIHDINDNEPIFTKDVYTATV 115
Query: 324 HENSVINTPV 333
E + + T V
Sbjct: 116 PEMADVGTFV 125
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 73/202 (36%), Gaps = 42/202 (20%)
Query: 56 KEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEK 115
K+ P TPA YR+ G DP G D +
Sbjct: 249 KDQPHTPAWNAAYRISGGDPTGRFAIL---------------------------TDPNSN 281
Query: 116 DLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDR----SNNDRRNTGTAAILVKVQD 171
D G++ ++ +D+E ++ L + A ++ TA + V V D
Sbjct: 282 D----------GLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVID 331
Query: 172 VEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPN 231
V + P F + R E + GT + + A D DR + I Y+ S IDP
Sbjct: 332 VNENP-YFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPV 390
Query: 232 TGNIFTLKELDRESATSNNGAY 253
G I T+ LDRES N Y
Sbjct: 391 NGQITTIAVLDRESPNVKNNIY 412
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 98/239 (41%), Gaps = 40/239 (16%)
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
N+ L+ D +F I+ ++G+ + + LD E + L+ AVD + N
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQ--LSVTKPLDRELIARFHLRAHAVDINGNQV 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD--RGINNKIL 215
N I++ V D+ D PEF+ V E GT V+ V A+D D +N +
Sbjct: 89 ENP--IDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Query: 216 YSI-----SSGSQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTEESKTVQPA 269
Y I S+ S +F I+ TG+I T+ LDRE Y L I+ T+ ++
Sbjct: 147 YRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ----YTLIIQATD----MEGN 198
Query: 270 PTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSV 328
PT + I +TDVND P F + + E+ EN V
Sbjct: 199 PTYGL--------------------SNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV 237
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 103/246 (41%), Gaps = 38/246 (15%)
Query: 97 LNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNND 156
LN ML+ + ++F+I+ G +I + LD E Y L I A D N
Sbjct: 141 LNGMLRYRILSQAPSTPSPNMFTINNETGD-IITVAAGLDREKVQQYTLIIQATDMEGNP 199
Query: 157 RRN-TGTAAILVKVQDVEDQPPEFVAVSSVTRVSED-VPVGTSVLQVKAVDGDRGINNKI 214
+ TA ++ V DV D PPEF A++ V E+ V V + L V D
Sbjct: 200 TYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNA 259
Query: 215 LYSISSG-SQGIFDI--DPNT--GNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPA 269
Y IS G G F I DPN+ G + +K +D E+ N ++L + +
Sbjct: 260 AYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFET----NRMFVLTVAAENQ------V 309
Query: 270 PTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFR-SPRYVAE---IHE 325
P AK +Q P + V++ + DVN E P F +P+ + + +H
Sbjct: 310 PLAKG---------------IQHPPQSTATVSVTVIDVN-ENPYFAPNPKIIRQEEGLHA 353
Query: 326 NSVINT 331
+++ T
Sbjct: 354 GTMLTT 359
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Query: 108 ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILV 167
+ VD D K +F I+ ++G + + LD E YQL++ D S + G + +
Sbjct: 40 KGVDQDPKGIFRINEISGD--VSVTRPLDREAIANYQLEVEVTDLSG--KIIDGPVRLDI 95
Query: 168 KVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDG-DRGINNKIL-YSI-----SS 220
V D D P F V V E P GT+V+++ A D D +N +L Y+I +
Sbjct: 96 SVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTK 155
Query: 221 GSQGIFDIDPNTGNIFTLKE---LDRESATSNNGAYILEIK 258
S +F IDP G+I T+ LDRE+ + ++E K
Sbjct: 156 PSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAK 196
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 32/142 (22%)
Query: 193 PVGTSVLQVKAVDGDRGINNKIL-YSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNG 251
P SV +V +G G ++ + +GIF I+ +G++ + LDRE+ +
Sbjct: 16 PFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIAN--- 72
Query: 252 AYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDET 311
Y LE++VT+ S + P + I + D ND
Sbjct: 73 -YQLEVEVTDLSGKIIDGPV---------------------------RLDISVIDQNDNR 104
Query: 312 PTFRSPRYVAEIHENSVINTPV 333
P F+ YV + E S T V
Sbjct: 105 PMFKEGPYVGHVMEGSPTGTTV 126
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G I +LD E K Y+L +DR NN R + ++KV D+ D P FV
Sbjct: 53 GDIYAFERLDREKKAEYELTAHIIDRRNN-RSLEPPSKFIIKVSDINDNAPIFVQKIFNG 111
Query: 187 RVSEDVPVGTSVLQVKAVDGDR---GINNKILYSISSGSQGIFDIDPNTGNIFTLK-ELD 242
V E +GTSV +V A D D + + Y I G++ F +D ++G IFT + +LD
Sbjct: 112 SVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE-YFTVD-DSGVIFTARADLD 169
Query: 243 RESATS 248
RES ++
Sbjct: 170 RESQSA 175
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
N+ L+ D +F I+ ++G+ + + LD E + L+ AVD + N
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQ--LSVTKPLDRELIARFHLRAHAVDINGNQV 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD--RGINNKIL 215
N I++ V D+ D PEF+ V E GT V+ V A+D D +N +
Sbjct: 89 ENP--IDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Query: 216 YSI-----SSGSQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTE 261
Y I S+ S +F I+ TG+I T+ LDRE Y L I+ T+
Sbjct: 147 YRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ----YTLIIQATD 194
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
N+ L+ D +F I+ ++G+ + + LD E + L+ AVD + N
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQ--LSVTKPLDRELIARFHLRAHAVDINGNQV 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD--RGINNKIL 215
N I++ V D+ D PEF+ V E GT V+ V A+D D +N +
Sbjct: 89 ENP--IDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Query: 216 YSI-----SSGSQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTE 261
Y I S+ S +F I+ TG+I T+ LDRE Y L I+ T+
Sbjct: 147 YRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ----YTLIIQATD 194
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 108 ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILV 167
+ VD D K F I+ G + + LD E YQL + D S + G + V
Sbjct: 41 KGVDQDPKGTFRIN--ENTGSVSVTRTLDRETIATYQLYVETTDASG--KTLEGPVPLEV 96
Query: 168 KVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDG-DRGINNKIL-YSI-----SS 220
V D D P F + V E P GT+V+++ A D D +N +L Y+I
Sbjct: 97 IVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDK 156
Query: 221 GSQGIFDIDPNTGNIFTLKE---LDRESATSNNGAYILEIK 258
S +F IDP G+I T+ LDRE+ + I+E +
Sbjct: 157 PSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQ 197
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 36/136 (26%)
Query: 202 KAVDGDRGINNKILYS---ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIK 258
K VD DR +K + + +G F I+ NTG++ + LDRE+ + Y L ++
Sbjct: 24 KVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT----YQLYVE 79
Query: 259 VTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQ-PAPTAKTEVTIIITDVNDETPTFRSP 317
T+ S KT++ P P + +I+ D ND P FR
Sbjct: 80 TTDAS-----------------------GKTLEGPVP-----LEVIVIDQNDNRPIFREG 111
Query: 318 RYVAEIHENSVINTPV 333
Y+ + E S T V
Sbjct: 112 PYIGHVMEGSPTGTTV 127
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV + N + IL+ V D D PEF
Sbjct: 58 GWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDP--MEILITVTDQNDNKPEFTQEVFKG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSG-----SQGIFDIDPNTGNIFTL 238
V E GTSV++V A D D +N I Y+I S + +F I+ NTG I +
Sbjct: 116 SVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVV 175
Query: 239 KE-LDRES 245
LDRES
Sbjct: 176 TTGLDRES 183
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILY----SISSGSQGIFDID 229
D P F + E+ PVGTSV+Q+ A D D G N +I Y ++ ++ +F ++
Sbjct: 9 DNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALN 68
Query: 230 PNTGNIFTLKELDRE 244
TG I + LDRE
Sbjct: 69 NTTGLITVQRSLDRE 83
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
LDRES
Sbjct: 176 TSGLDRES 183
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
LDRES
Sbjct: 176 TSGLDRES 183
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
LDRES
Sbjct: 176 TSGLDRES 183
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 57 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 114
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 115 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 174
Query: 239 KE-LDRES 245
LDRES
Sbjct: 175 TSGLDRES 182
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 60 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 117
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 118 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 177
Query: 239 KE-LDRES 245
LDRES
Sbjct: 178 TSGLDRES 185
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
LDRES
Sbjct: 176 TSGLDRES 183
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 60 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 117
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 118 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 177
Query: 239 KE-LDRES 245
LDRES
Sbjct: 178 TSGLDRES 185
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
LDRES
Sbjct: 176 TSGLDRES 183
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 59 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 116
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 117 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 176
Query: 239 KE-LDRES 245
LDRES
Sbjct: 177 TSGLDRES 184
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
LDRES
Sbjct: 176 TSGLDRES 183
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-SGSQGIFDIDPNTGNIFTLKELDRESA 246
+SED PVG+SV Q+ A D D N+ +++ +S + F ++P+TG ++ + LDRE+
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 247 TSNNGAYILEIKVTEESKTV 266
+ + +E V++ +
Sbjct: 77 SE----FTVEFSVSDHQGVI 92
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
NR P F + + + + E DTP G+ + +L D D D L FGV G + R +
Sbjct: 4 NRLP-FFTNHFFDTYLLISE--DTPVGSSVTQLLARDMDNDPLVFGVS--GEEASRFFAV 58
Query: 98 NVMLKVVYHLENVDGDEKDLFSI--STVNGKGVI 129
VV+ + +D + K F++ S + +GVI
Sbjct: 59 EPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVI 92
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L A S+N I++ V D D PEF
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHA--DSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
LDRES
Sbjct: 176 TSGLDRES 183
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNI-FT 237
V+E GTSV++V A D D +N I Y+I S + +F ++ +TG I
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVD 175
Query: 238 LKELDRES 245
LDRES
Sbjct: 176 TSGLDRES 183
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGI---FDIDP 230
D P F ++E+ GT +LQ++A D D G+N +I Y + ++ + +D
Sbjct: 9 DNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDE 68
Query: 231 NTGNIFTLKELDRE 244
+G + L +DRE
Sbjct: 69 TSGWLSVLHRIDRE 82
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 308 NDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQ 355
ND +P F Y A++ ENS TP+ L + D D G NG +
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQL-----RAADLDVGVNGQIE 50
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 51/242 (21%)
Query: 102 KVVYHLENVDGDEKDLFSIS------TVNGKGVIKLIGKLDYEN----KFLYQLKILAVD 151
K V+ LE +K+ F I TV G +++ K DYE K + I+
Sbjct: 21 KSVFQLEK--ETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM 78
Query: 152 RSNNDRRNTGTAAILVKVQDVEDQPPEFV--AVSSVTRVSEDVPVGTSVLQVKAVDGDRG 209
N + T +++ V+DV D+PP F+ + V + P T V ++A D D
Sbjct: 79 GHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD 138
Query: 210 INNKILYSISSGSQGIFDIDPNTGNIFT----LKELDRESATSNNGAYILEIKVTEESKT 265
+N + + + G F++D +G + T L +LD E Y+L +K +++
Sbjct: 139 -HNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME--------YVLYVKAEDQNGK 189
Query: 266 VQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHE 325
V + Q P + + P F P Y AEI E
Sbjct: 190 VD-------------------DRRFQSTPEERLSIV-----GGKRAPQFYMPSYEAEIPE 225
Query: 326 NS 327
N
Sbjct: 226 NQ 227
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSN--NDRRNTGTAAILVKVQDVEDQPPEFVAVSS 184
GV++ G ++ Y L + A D++ +DRR T + + + + P+F S
Sbjct: 161 GVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGK-RAPQFYMPSY 219
Query: 185 VTRVSEDVPVGTSVLQVKAVD-GDRGINNKILYSISSGSQG--IFDIDPNTGNIFTLKEL 241
+ E+ + ++ +KA DR +I Y++ + QG F+I P +G + KEL
Sbjct: 220 EAEIPENQKKDSDIISIKAKSFADR----EIRYTLKAQGQGAGTFNIGPTSGIVKLAKEL 275
Query: 242 DRESATSNNGAYILEIKVTEES 263
D E + Y L + TE+S
Sbjct: 276 DFEDLRQPH-VYSLIVTATEDS 296
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 2/156 (1%)
Query: 113 DEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQ 170
+E F+I+T + +G++ LD+E + Y L+I + + A +
Sbjct: 419 NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTV 478
Query: 171 DVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDP 230
+ ++ P FV S VSED+ G ++ + A D D+ K+ Y I + ++
Sbjct: 479 EDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNK 538
Query: 231 NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTV 266
+ G + LDRES N Y + + VT++ +V
Sbjct: 539 DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV 574
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 86/234 (36%), Gaps = 38/234 (16%)
Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
KV Y + + D + +F I G ++ LD E Y L AV S N
Sbjct: 188 KVYYSITGQGADNPPQGVFRIEWETGWMLVTR--PLDREEYDKYVLSSHAV--SENGSPV 243
Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGIN--NKILYS 217
I + V D D P+F V E V GT V+ V A D D I+ N +L
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL-- 301
Query: 218 ISSGSQGIFDIDPNTG--NIFTLKELDRESAT-SNNGAYILEIKVTEESKTVQPAPTAKX 274
S I DP N+FT+ +RE+ S G + K E + TVQ
Sbjct: 302 ----SYSILKQDPEEPIPNLFTI---NRETGVISLIGTGLDREKFPEYTLTVQ------- 347
Query: 275 XXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSV 328
+ + + + I ITD ND P F Y A + EN +
Sbjct: 348 -----------ATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI 390
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 2/156 (1%)
Query: 113 DEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQ 170
+E F+I+T + +G++ LD+E + Y L+I + + A +
Sbjct: 270 NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTV 329
Query: 171 DVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDP 230
+ ++ P FV S VSED+ G ++ + A D D+ K+ Y I + ++
Sbjct: 330 EDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNK 389
Query: 231 NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTV 266
+ G + LDRES N Y + + VT++ +V
Sbjct: 390 DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV 425
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 85/234 (36%), Gaps = 38/234 (16%)
Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
KV Y + + D + +F I G ++ LD E Y L AV S N
Sbjct: 39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTR--PLDREEYDKYVLSSHAV--SENGSPV 94
Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGIN--NKILYS 217
I + V D D P+F V E V GT V+ V A D D I+ N +L
Sbjct: 95 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL-- 152
Query: 218 ISSGSQGIFDIDPNTG--NIFTLKELDRESAT-SNNGAYILEIKVTEESKTVQPAPTAKX 274
S I DP N+FT+ +RE+ S G + K E + TVQ
Sbjct: 153 ----SYSILKQDPEEPIPNLFTI---NRETGVISLIGTGLDREKFPEYTLTVQATDLEGA 205
Query: 275 XXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSV 328
+ + + I ITD ND P F Y A + EN +
Sbjct: 206 GL------------------SVEGKAIIQITDANDNAPIFDPKTYTALVPENEI 241
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
G +K+ LD E Y L AV S+N I++ V D D PEF
Sbjct: 60 GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 117
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGIN 211
V+E GTSV++V A D D +N
Sbjct: 118 SVAEGAVPGTSVMKVSATDADDDVN 142
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 299 EVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQ-VFDYDQGKNGTFQMF 357
EV I++ D ND +PTF+ Y A ++E + + T + F G D D G NG +
Sbjct: 112 EVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTI-FTGFSGDNGATDIDDGPNGQIEYV 170
Query: 358 IE 359
I+
Sbjct: 171 IQ 172
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 165 ILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVL-----QVKAVDGDRGINNKILYSIS 219
+ + V+D D P F S V+E PVGT++ A D D G N +I Y I
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ 172
Query: 220 SG-----SQGIFDIDPN-TGNIFTLKELDRESAT 247
S F+I TGN+ K L+ E T
Sbjct: 173 YNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKT 206
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 202 KAVDGDRGINNKI-LYS--ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIK 258
+ V DR +KI LY + +GIF I+ N+G + K LDRE+ S Y L+++
Sbjct: 23 RVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPS----YQLQVE 78
Query: 259 VTEES-KTVQ 267
T+E+ KT++
Sbjct: 79 TTDENGKTIE 88
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 195 GTSVLQVKAV--DGDRGINNKILYSISSGSQGI-FDIDPNTGNIFTLKELDRESAT 247
GT L V + D DRG + I Y +S GI F ID TG+I ++ LDRE +
Sbjct: 16 GTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERS 70
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 202 KAVDGDRGINNKILYS---ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIK 258
K VD DR +K + + +G F I+ NTG++ + LDRE+ + Y L ++
Sbjct: 24 KVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT----YQLYVE 79
Query: 259 VTEES-KTVQ-PAP 270
T+ S KT++ P P
Sbjct: 80 TTDASGKTLEGPVP 93
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 202 KAVDGDRGINNKILYS---ISSGSQGIFDIDPNTGNIFTLKELDRE 244
K VD DR +K + + +GIF I+ NTG++ + LDRE
Sbjct: 23 KVVDSDRPERSKFRLTGKGVDQEPKGIFRINENTGSVSVTRTLDRE 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,091,256
Number of Sequences: 62578
Number of extensions: 482545
Number of successful extensions: 1178
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 116
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)