RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11780
(383 letters)
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 153 bits (389), Expect = 8e-44
Identities = 80/281 (28%), Positives = 115/281 (40%), Gaps = 48/281 (17%)
Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
K+ Y L +F I+ + G I I +LD E K Y L AVD N +
Sbjct: 34 KIKYILSGDGAGT--IFQINDITG--DIHAIKRLDREEKAEYTLTAQAVDFETN-KPLEP 88
Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSI 218
+ ++KVQD+ D PEF+ V E +GTSV V A D D G + K++YSI
Sbjct: 89 PSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSI 148
Query: 219 SSGSQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVT 277
G Q F I+P T I T +DRE+ + V
Sbjct: 149 LEG-QPYFSIEPETAIIKTALPNMDREA-------------------------KEEYLVV 182
Query: 278 IIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLG 337
I D+ S + T +T+ +TDVND P F Y + E+ V+ T + +
Sbjct: 183 IQAKDMGGHS----GGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRV- 237
Query: 338 GVVPQVFDYDQGKNG--TFQMFIEGD-MGTFEITPQKIINE 375
+ D D G+N ++ I+GD FEIT +
Sbjct: 238 ----KANDQDIGENAQSSYD-IIDGDGTALFEITSDAQAQD 273
Score = 113 bits (285), Expect = 7e-29
Identities = 61/251 (24%), Positives = 95/251 (37%), Gaps = 42/251 (16%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
AP F + E + GT + + D D +G
Sbjct: 103 APEF---LNGPYHATVPE--MSILGTSVTNVTATDADDP--VYGNSA------------- 142
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIK-LIGKLDYENKFLYQLKILAVDRSNNDRR 158
K+VY + + + FSI +IK + +D E K Y + I A D +
Sbjct: 143 --KLVYSIL----EGQPYFSIEPETA--IIKTALPNMDREAKEEYLVVIQAKDMGGHSGG 194
Query: 159 NTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSI 218
+GT + V + DV D PP+F V EDV +GT++ +VKA D D G N + Y I
Sbjct: 195 LSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDI 254
Query: 219 SSG-SQGIF----DIDPNTGNIFTLKELDRESATSNNGAYILEIKVT----EESKTVQPA 269
G +F D G I K LD E+ +Y L+++ + + +
Sbjct: 255 IDGDGTALFEITSDAQAQDGVIRLRKPLDFET----KKSYTLKVEAANIHIDPRFSSRGP 310
Query: 270 PTAKTEVTIII 280
V I++
Sbjct: 311 FKDTATVKIVV 321
Score = 99.3 bits (248), Expect = 9e-24
Identities = 43/187 (22%), Positives = 64/187 (34%), Gaps = 40/187 (21%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRESA 246
+ E ++ D D G + KI Y +S G+ IF I+ TG+I +K LDRE
Sbjct: 10 LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEK 68
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD 306
Y L + + +E I + D
Sbjct: 69 AE----YTLTAQAVDFE--------------------------TNKPLEPPSEFIIKVQD 98
Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYD---QGKNGTFQMFIEGDMG 363
+ND P F + Y A + E S++ T VT + D D G + I
Sbjct: 99 INDNAPEFLNGPYHATVPEMSILGTSVTNV-----TATDADDPVYGNSAKLVYSILEGQP 153
Query: 364 TFEITPQ 370
F I P+
Sbjct: 154 YFSIEPE 160
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 159 bits (403), Expect = 5e-43
Identities = 61/316 (19%), Positives = 100/316 (31%), Gaps = 68/316 (21%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
AP F + + E G + RL D D
Sbjct: 373 APIF---DPKTYTALVPE---NEIGFEVQRLSVTDLDMP----------------GTPAW 410
Query: 100 MLKVVYHLENVDGDEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVDRSNN-D 156
+ +E F+I+T + +G++ LD+E + Y L+I +
Sbjct: 411 QAVYK-----IRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSV 465
Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILY 216
T TA + V V+DV + P FV S VSED+ G ++ + A D D+ K+ Y
Sbjct: 466 PLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY 524
Query: 217 SISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEV 276
I + ++ + G + LDRES N Y + + VT++
Sbjct: 525 FIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDG------------- 571
Query: 277 TIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFL 336
T + + + DVND P + ++
Sbjct: 572 --------------VSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTIS-- 615
Query: 337 GGVVPQVFDYDQGKNG 352
D D N
Sbjct: 616 --------DADIPPNT 623
Score = 151 bits (384), Expect = 2e-40
Identities = 70/288 (24%), Positives = 97/288 (33%), Gaps = 55/288 (19%)
Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
KV Y + + D + +F I G + + LD E Y L AV + +
Sbjct: 188 KVYYSITGQGADNPPQGVFRIEWETGW--MLVTRPLDREEYDKYVLSSHAVSENGSPV-- 243
Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILY 216
I + V D D P+F V E V GT V+ V A D D +N + Y
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 303
Query: 217 SISSG-----SQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTEESKTVQPAP 270
SI +F I+ TG I + LDRE Y L ++ T+
Sbjct: 304 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE----YTLTVQATDLE------- 352
Query: 271 TAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVIN 330
+ + + I ITD ND P F Y A + EN +
Sbjct: 353 --------------------GAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-G 391
Query: 331 TPVTFLGGVVPQVFDYDQGKNGTFQMF--IEGD-MGTFEITPQKIINE 375
V L V D D +Q I + G F IT N+
Sbjct: 392 FEVQRL-----SVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQ 434
Score = 141 bits (356), Expect = 7e-37
Identities = 69/341 (20%), Positives = 113/341 (33%), Gaps = 71/341 (20%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P+F Q ++E GT + + D D ++ + +G
Sbjct: 260 RPKF---TQDVFRGSVRE--GVQPGTQVMAVSATDEDDNIDSL----NG----------- 299
Query: 100 MLKVVYHLE--NVDGDEKDLFSISTVNGKGVIKLIGK-LDYENKFLYQLKILAVDRSNND 156
+ Y + + + +LF+I+ GVI LIG LD E Y L + A D
Sbjct: 300 --VLSYSILKQDPEEPIPNLFTINRET--GVISLIGTGLDREKFPEYTLTVQATDLEGA- 354
Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN--KI 214
+ ++++ D D P F + V E+ +G V ++ D D +
Sbjct: 355 -GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQA 412
Query: 215 LYSISSGSQGIFDIDP----NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAP 270
+Y I G F+I N G + T K LD E Y+L+I V P P
Sbjct: 413 VYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQ----YVLQITVENAEPFSVPLP 468
Query: 271 TAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVIN 330
T+ VT+ + DV +E P F ++ E+
Sbjct: 469 TSTATVTVTVEDV-------------------------NEAPFFVPAVSRVDVSEDLSRG 503
Query: 331 TPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDM-GTFEITPQ 370
+ L D D+ + FI D +
Sbjct: 504 EKIISL-----VAQDPDKQQIQKLSYFIGNDPARWLTVNKD 539
Score = 88.4 bits (219), Expect = 4e-19
Identities = 47/288 (16%), Positives = 79/288 (27%), Gaps = 76/288 (26%)
Query: 38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
N AP F + + E D G I L DPD +
Sbjct: 482 NEAPFF---VPAVSRVDVSE--DLSRGEKIISLVAQDPDKQQIQ---------------- 520
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFL----YQLKILAVDRS 153
K+ Y + D +++ NG ++ G LD E++++ Y + +L D
Sbjct: 521 ----KLSYFI---GNDPARWLTVNKDNG--IVTGNGNLDRESEYVKNNTYTVIMLVTDDG 571
Query: 154 NNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN- 212
+ TGT +++ V DV D P P + D D N
Sbjct: 572 VSVG--TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV-----LTISDADIPPNTY 624
Query: 213 KILYSISSGSQ-GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPT 271
S+S GS + G L + G Y
Sbjct: 625 PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKK----GDY------------------ 662
Query: 272 AKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRY 319
+ ++++D T V + + +
Sbjct: 663 ---SIYVLLSD--------AQNNPQLTVVNATVCSCEGKAIKCQEKLV 699
Score = 78.8 bits (194), Expect = 5e-16
Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 31/222 (13%)
Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSED-VPVGTSVLQVKAVDGDRGINNKILYSI 218
+ DV P F + + V+ + G + +V D LY +
Sbjct: 18 CLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCT--TRKHGLYDV 75
Query: 219 SSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTI 278
F + P+ G + + + T + + K T + +
Sbjct: 76 ---GDSRFRVLPD-GTVLVKRHVKLHKDTK----FTISTWDARGIK-------HSTNIAV 120
Query: 279 IITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYV---AEIHENSVINTPVTF 335
+ A + +++ ++ + +V ++ EN P
Sbjct: 121 ASKRHRSG----EEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKR- 175
Query: 336 LGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEAS 377
+ Q+ ++ + I G I +
Sbjct: 176 ----LVQI-KSNKDRFNKVYYSITGQGADNPPQGVFRIEWET 212
Score = 35.2 bits (81), Expect = 0.037
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 6/95 (6%)
Query: 105 YHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAA 164
Y + G + + ++ KG L+ K Y + +L D NN +
Sbjct: 626 YKVSLSHGSDLTWKAE--LDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVN-- 681
Query: 165 ILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVL 199
V E + + + V +
Sbjct: 682 --ATVCSCEGKAIKCQEKLVGGFDLPIILVILGSV 714
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 154 bits (390), Expect = 4e-42
Identities = 73/288 (25%), Positives = 107/288 (37%), Gaps = 52/288 (18%)
Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
+ Y + D +F I+ ++G+ + + LD E + L+ AVD + N
Sbjct: 33 SLRYSVTGPGADQPPTGIFIINPISGQ--LSVTKPLDRELIARFHLRAHAVDINGNQV-- 88
Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD--RGINNKILYS 217
I++ V D+ D PEF+ V E GT V+ V A+D D +N + Y
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 148
Query: 218 ISSG-----SQGIFDIDPNTGNIFTLK-ELDRESATSNNGAYILEIKVTEESKTVQPAPT 271
I S S +F I+ TG+I T+ LDRE Y L I+
Sbjct: 149 ILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ----YTLIIQA------------ 192
Query: 272 AKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINT 331
TD+ + I +TDVND P F + + E+ EN V +
Sbjct: 193 ---------TDM---EGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV-DV 239
Query: 332 PVTFLGGVVPQVFDYDQGKNGTFQM---FIEGD-MGTFEITPQKIINE 375
V L V D DQ + GD G F I N+
Sbjct: 240 IVANL-----TVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSND 282
Score = 153 bits (389), Expect = 6e-42
Identities = 64/343 (18%), Positives = 100/343 (29%), Gaps = 76/343 (22%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P F + E + L D D +
Sbjct: 220 PPEF---TAMTFYGEVPE---NRVDVIVANLTVTDKD------------------QPHTP 255
Query: 100 MLKVVYHLENVDGDEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
Y + GD F+I T + G++ ++ +D+E ++ L + A ++ +
Sbjct: 256 AWNAAYRI--SGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAK 313
Query: 158 RNTG----TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNK 213
TA + V V DV + P F + R E + GT + + A D DR +
Sbjct: 314 GIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQN 372
Query: 214 ILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAK 273
I Y+ S IDP G I T+ LDRES N Y ++
Sbjct: 373 IRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNG---------- 422
Query: 274 TEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSP-RYVAEIHENSVINTP 332
P + + I + D+ND P E E + IN
Sbjct: 423 -----------------IPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEPNSINIT 465
Query: 333 VTFLGGVVPQVFDYDQGKNG-----TFQMFIEGDMGTFEITPQ 370
DYD N + + I
Sbjct: 466 AL----------DYDIDPNAGPFAFDLPLSPVTIKRNWTINRL 498
Score = 140 bits (356), Expect = 2e-37
Identities = 71/342 (20%), Positives = 114/342 (33%), Gaps = 67/342 (19%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P F + E + GT++ + D D D +G
Sbjct: 105 RPEF---LHQVWNGSVPE--GSKPGTYVMTVTAIDAD-DPNA----LNG----------- 143
Query: 100 MLKVVYHLE--NVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNN-D 156
+ Y + ++F+I+ G +I + LD E Y L I A D N
Sbjct: 144 --MLRYRILSQAPSTPSPNMFTINNETGD-IITVAAGLDREKVQQYTLIIQATDMEGNPT 200
Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN--KI 214
+ TA ++ V DV D PPEF A++ V E+ V V + D D+
Sbjct: 201 YGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNA 259
Query: 215 LYSISSGS-QGIFDI----DPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPA 269
Y IS G G F I + N G + +K +D E+ ++L +
Sbjct: 260 AYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRM----FVLTVAA---------- 305
Query: 270 PTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVI 329
+ +K +Q P + V++ + DVN+ P F + E
Sbjct: 306 -----------ENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHA 353
Query: 330 NTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGT-FEITPQ 370
T +T L D D+ + D +I P
Sbjct: 354 GTMLTTL-----TAQDPDRYMQQNIRYTKLSDPANWLKIDPV 390
Score = 97.0 bits (242), Expect = 3e-22
Identities = 52/291 (17%), Positives = 87/291 (29%), Gaps = 76/291 (26%)
Query: 38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
N P F +IR +E AGT + L DPD +
Sbjct: 333 NENPYF---APNPKIIRQEE--GLHAGTMLTTLTAQDPDRYMQQ---------------- 371
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFL----YQLKILAVDRS 153
+ Y D + I VNG I I LD E+ + Y LA D
Sbjct: 372 ----NIRYTK---LSDPANWLKIDPVNG--QITTIAVLDRESPNVKNNIYNATFLASDNG 422
Query: 154 NNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN- 212
+GT + + + D+ D P+ + E + + + A+D D N
Sbjct: 423 IPPM--SGTGTLQIYLLDINDNAPQVL--PQEAETCETPE--PNSINITALDYDIDPNAG 476
Query: 213 KILYSISSGS---QGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQP 268
+ + + + I+ G+ L ++ A G Y
Sbjct: 477 PFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEA----GIY--------------- 517
Query: 269 APTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRY 319
EV IIITD + P + + + + + + +
Sbjct: 518 ------EVPIIITD------SGNPPKSNISILRVKVCQCDSNGDCTDVHHH 556
Score = 90.1 bits (224), Expect = 9e-20
Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 37/152 (24%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELD 242
+ E+ G ++ + DR N + YS++ GIF I+P +G + K LD
Sbjct: 9 LPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI 302
RE + L + + ++ I
Sbjct: 68 RELIAR----FHLRAHAVDING---------------------------NQVENPIDIVI 96
Query: 303 IITDVNDETPTFRSPRYVAEIHENSVINTPVT 334
+ D+ND P F + + E S T V
Sbjct: 97 NVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVM 128
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 152 bits (387), Expect = 1e-41
Identities = 62/316 (19%), Positives = 101/316 (31%), Gaps = 68/316 (21%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
AP F + + E G + RL D D
Sbjct: 224 APIF---DPKTYTALVPE---NEIGFEVQRLSVTDLD----------------MPGTPAW 261
Query: 100 MLKVVYHLENVDGDEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVD-RSNND 156
+ +E F+I+T + +G++ LD+E + Y L+I + +
Sbjct: 262 QAVYK-----IRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSV 316
Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILY 216
T TA + V V+DV + P FV S VSED+ G ++ + A D D+ K+ Y
Sbjct: 317 PLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY 375
Query: 217 SISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEV 276
I + ++ + G + LDRES N Y + + VT++
Sbjct: 376 FIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDG------------- 422
Query: 277 TIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFL 336
T + + + DVND P +
Sbjct: 423 --------------VSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP-------- 460
Query: 337 GGVVPQVFDYDQGKNG 352
V + D D N
Sbjct: 461 --QVLTISDADIPPNT 474
Score = 147 bits (373), Expect = 1e-39
Identities = 75/350 (21%), Positives = 112/350 (32%), Gaps = 83/350 (23%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
++I I++ E P + +++ ++ D
Sbjct: 5 HHDWVI-----PPIKVSENERGPFPKRLVQIK-SNKDRF--------------------- 37
Query: 100 MLKVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
KV Y + + D + +F I G + + LD E Y L AV + +
Sbjct: 38 -NKVYYSITGQGADNPPQGVFRIEWETG--WMLVTRPLDREEYDKYVLSSHAVSENGSPV 94
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKI 214
I + V D D P+F V E V GT V+ V A D D +N +
Sbjct: 95 --EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL 152
Query: 215 LYSISSG-----SQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTEESKTVQP 268
YSI +F I+ TG I + LDRE Y L ++ T+
Sbjct: 153 SYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE----YTLTVQATDLE----- 203
Query: 269 APTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSV 328
+ + + I ITD ND P F Y A + EN +
Sbjct: 204 ----------------------GAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI 241
Query: 329 INTPVTFLGGVVPQVFDYDQGKNGTFQMF--IEGD-MGTFEITPQKIINE 375
V L V D D +Q I + G F IT N+
Sbjct: 242 -GFEVQRL-----SVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQ 285
Score = 138 bits (350), Expect = 2e-36
Identities = 69/341 (20%), Positives = 113/341 (33%), Gaps = 71/341 (20%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P+F Q ++E GT + + D D ++ + +G
Sbjct: 111 RPKF---TQDVFRGSVRE--GVQPGTQVMAVSATDEDDNIDSL----NG----------- 150
Query: 100 MLKVVYHLE--NVDGDEKDLFSISTVNGKGVIKLIGK-LDYENKFLYQLKILAVDRSNND 156
+ Y + + + +LF+I+ G VI LIG LD E Y L + A D
Sbjct: 151 --VLSYSILKQDPEEPIPNLFTINRETG--VISLIGTGLDREKFPEYTLTVQATDLEGA- 205
Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN--KI 214
+ ++++ D D P F + V E+ +G V ++ D D +
Sbjct: 206 -GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQA 263
Query: 215 LYSISSGSQGIFDIDP----NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAP 270
+Y I G F+I N G + T K LD E Y+L+I V P P
Sbjct: 264 VYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQ----YVLQITVENAEPFSVPLP 319
Query: 271 TAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVIN 330
T+ VT+ + DV +E P F ++ E+
Sbjct: 320 TSTATVTVTVEDV-------------------------NEAPFFVPAVSRVDVSEDLSRG 354
Query: 331 TPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGT-FEITPQ 370
+ L D D+ + FI D +
Sbjct: 355 EKIISL-----VAQDPDKQQIQKLSYFIGNDPARWLTVNKD 390
Score = 93.1 bits (232), Expect = 7e-21
Identities = 37/185 (20%), Positives = 59/185 (31%), Gaps = 48/185 (25%)
Query: 175 QPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDID 229
++V +E P ++Q+K+ ++ NK+ YSI+ QG+F I+
Sbjct: 4 HHHDWVIPPIKVSENERGPFPKRLVQIKS---NKDRFNKVYYSITGQGADNPPQGVFRIE 60
Query: 230 PNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKT 289
TG + + LDRE Y+L E+
Sbjct: 61 WETGWMLVTRPLDREEYDK----YVLSSHAVSENG------------------------- 91
Query: 290 VQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV--FDYD 347
E+TI + D ND P F + + E T V V D D
Sbjct: 92 --SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVM-------AVSATDED 142
Query: 348 QGKNG 352
+
Sbjct: 143 DNIDS 147
Score = 87.8 bits (218), Expect = 5e-19
Identities = 46/284 (16%), Positives = 77/284 (27%), Gaps = 76/284 (26%)
Query: 38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
N AP F + + E D G I L DPD
Sbjct: 333 NEAPFF---VPAVSRVDVSE--DLSRGEKIISLVAQDPDK-----QQIQK---------- 372
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFL----YQLKILAVDRS 153
+ Y + D +++ NG ++ G LD E++++ Y + +L D
Sbjct: 373 -----LSYFI---GNDPARWLTVNKDNG--IVTGNGNLDRESEYVKNNTYTVIMLVTDDG 422
Query: 154 NNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN- 212
+ TGT +++ V DV D P P + D D N
Sbjct: 423 VSVG--TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTY 475
Query: 213 KILYSISSGSQ-GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPT 271
S+S GS + G L + G Y +
Sbjct: 476 PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKK----GDYSI---------------- 515
Query: 272 AKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFR 315
++++D T V + + +
Sbjct: 516 -----YVLLSD--------AQNNPQLTVVNATVCSCEGKAIKCQ 546
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 150 bits (380), Expect = 9e-41
Identities = 67/288 (23%), Positives = 102/288 (35%), Gaps = 55/288 (19%)
Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
KV Y + + D +F I G +K+ LD E Y L AV +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETG--WLKVTQPLDREAIAKYILYSHAVSSNGEAV-- 88
Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGI---NNKILY 216
I++ V D D PEF V+E GTSV++V A D D + N I Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 217 SISSG-----SQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTEESKTVQPAP 270
+I S + +F ++ +TG I L LDRES + Y L ++ +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT----YTLVVQAADLQ------- 197
Query: 271 TAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVIN 330
+ + I + D+ND P F Y ++ EN V N
Sbjct: 198 --------------------GEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEV-N 236
Query: 331 TPVTFLGGVVPQVFDYDQGKNGTFQM--FIEGD-MGTFEITPQKIINE 375
+ L +V D D ++ + D F + N+
Sbjct: 237 ARIATL-----KVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTND 279
Score = 148 bits (375), Expect = 5e-40
Identities = 69/338 (20%), Positives = 105/338 (31%), Gaps = 73/338 (21%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
AP F + ++ E I L+ D D
Sbjct: 218 APVF---NPSTYQGQVPE---NEVNARIATLKVTDDD------------------APNTP 253
Query: 100 MLKVVYHLENVDGDEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
K VY + D F + T G++K LD+E K Y L + + +
Sbjct: 254 AWKAVYTVV---NDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEG 310
Query: 158 -RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILY 216
TA + V V DV + P F+ V ED VG + A + D ++ KI Y
Sbjct: 311 SLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITY 369
Query: 217 SISSGSQGIFDIDPNTGNIFTLKELDRE-SATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
I + +I+P TG IFT E+DRE + N Y+ I T++
Sbjct: 370 RIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDG------------ 417
Query: 276 VTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTF 335
P T + +++ DVND P
Sbjct: 418 ---------------SPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQ-------- 454
Query: 336 LGGVVPQVFDYDQGKNG---TFQMFIEGDMGTFEITPQ 370
+ + D D N T ++ G + I
Sbjct: 455 --PHIITILDPDLPPNTSPFTAEL-THGASVNWTIEYN 489
Score = 98.6 bits (246), Expect = 1e-22
Identities = 43/290 (14%), Positives = 76/290 (26%), Gaps = 78/290 (26%)
Query: 38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
N AP F E + + E D G I +PD +
Sbjct: 327 NEAPIF---MPAERRVEVPE--DFGVGQEITSYTAREPDT-----FMDQK---------- 366
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYE-----NKFLYQLKILAVDR 152
+ Y + D + I+ G I ++D E Y I+A D
Sbjct: 367 -----ITYRI---WRDTANWLEINPETG--AIFTRAEMDREDAEHVKNSTYVALIIATDD 416
Query: 153 SNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN 212
+ TGT +L+ + DV D P + + P + +D D N
Sbjct: 417 GSPIA--TGTGTLLLVLLDVNDNAPIPE--PRNMQFCQRNPQPHII---TILDPDLPPNT 469
Query: 213 -KILYSISSGSQGIFDIDPN--TGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPA 269
++ G+ + I+ N L+ G Y
Sbjct: 470 SPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEI----GEY---------------- 509
Query: 270 PTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRY 319
++ + + D T + + + D +
Sbjct: 510 -----KIHLKLAD--------NQNKDQVTTLDVHVCDCEGTVNNCMKAHH 546
Score = 88.5 bits (220), Expect = 2e-19
Identities = 36/172 (20%), Positives = 54/172 (31%), Gaps = 46/172 (26%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELD 242
E+ G + + +R K+ YSI+ G+F I+ TG + + LD
Sbjct: 9 CPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLD 67
Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI 302
RE+ YIL + A E+ I
Sbjct: 68 REAIAK----YILYSHAVSSNG---------------------------EAVEDPMEIVI 96
Query: 303 IITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV--FDYDQGKNG 352
+TD ND P F + + E +V T V +V D D N
Sbjct: 97 TVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVM-------KVSATDADDDVNT 141
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 140 bits (355), Expect = 4e-40
Identities = 61/244 (25%), Positives = 96/244 (39%), Gaps = 42/244 (17%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P F + + + + E DTP G+ + +L D D D
Sbjct: 5 LPFFT-NHFFDTYLLISE--DTPVGSSVTQLLARDMDND--------------------- 40
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
+V+ + + F++ G V+ L LD E K + ++ D +
Sbjct: 41 --PLVFGV--SGEEASRFFAVEPDTG--VVWLRQPLDRETKSEFTVEFSVSDH-----QG 89
Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSIS 219
T + ++V DV D P F R+ E+ PVGT + V A D D G +LYS
Sbjct: 90 VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQ 149
Query: 220 SGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTII 279
S F ID G + ++ELD E + Y L + T++ KT + + II
Sbjct: 150 PPSP-FFAIDSARGIVTVIQELDYEVTQA----YQLTVNATDQDKT--RPLSTLANLAII 202
Query: 280 ITDV 283
ITD+
Sbjct: 203 ITDM 206
Score = 107 bits (270), Expect = 9e-28
Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 45/201 (22%)
Query: 174 DQPPEFV--AVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDP 230
++ P F + +SED PVG+SV Q+ A D D N+ +++ +S F ++P
Sbjct: 3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEP 59
Query: 231 NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTV 290
+TG ++ + LDRE+ + + +E V+ D
Sbjct: 60 DTGVVWLRQPLDRETKSE----FTVEFSVS---------------------D-------- 86
Query: 291 QPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGK 350
+V I + DVND PTF + Y I EN+ + TP+ + D D G
Sbjct: 87 -HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIV-----NATDPDLGA 140
Query: 351 NGTFQMFIEGDMGTFEITPQK 371
G+ + F I +
Sbjct: 141 GGSVLYSFQPPSPFFAIDSAR 161
Score = 54.1 bits (131), Expect = 9e-09
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 32/135 (23%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
AP F +R+ E +TP GT I+ + DPD G G
Sbjct: 106 APTF---HNQPYSVRIPE--NTPVGTPIFIVNATDPD-----LGAGG------------- 142
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
V+Y + F+I + +G++ +I +LDYE YQL + A D+
Sbjct: 143 --SVLYSFQ----PPSPFFAIDSA--RGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL- 193
Query: 160 TGTAAILVKVQDVED 174
+ A + + + D++D
Sbjct: 194 STLANLAIIITDMQD 208
Score = 29.9 bits (68), Expect = 1.1
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 308 NDETPTFRSPRYVA--EIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTF 365
+ P F + + I E++ + + VT L D D F + E F
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLAR-----DMDNDPL-VFGVSGEEASRFF 55
Query: 366 EITPQ 370
+ P
Sbjct: 56 AVEPD 60
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 144 bits (365), Expect = 2e-39
Identities = 65/318 (20%), Positives = 114/318 (35%), Gaps = 72/318 (22%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P FI + ++ + P T ++ L+ DPD + N+
Sbjct: 108 PPYFINRPLP-MQAVVQL--NAPPNTPVFTLQARDPD------------------TDHNI 146
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSN--NDR 157
Y + V F + +G V++ G ++ Y L + A D++ +DR
Sbjct: 147 ----HYFI--VRDRTGGRFEVDERSG--VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDR 198
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
R T + + + P+F S + E+ + ++ +KA + +I Y+
Sbjct: 199 RFQSTPEERLSIVGG-KRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYT 254
Query: 218 I--SSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
+ G F+I P +G + KELD E Y L + TE+S
Sbjct: 255 LKAQGQGAGTFNIGPTSGIVKLAKELDFED-LRQPHVYSLIVTATEDS------------ 301
Query: 276 VTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVA-EIHENSVINTPVT 334
+ ++TI +TDVND P F P Y A + E+ + T +
Sbjct: 302 ----------------GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345
Query: 335 FLGGVVPQVFDYDQGKNG 352
+ + D D G N
Sbjct: 346 RV-----KAMDSDSGSNA 358
Score = 132 bits (333), Expect = 6e-35
Identities = 58/286 (20%), Positives = 98/286 (34%), Gaps = 56/286 (19%)
Query: 102 KVVYHLENVDGDEKDLFSISTVNGK------GVIKLIGKLDYENK------FLYQLKILA 149
K V+ LE +K+ F I N G +++ K DYE + +
Sbjct: 26 KSVFQLEK--ETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM 83
Query: 150 VDRSNNDRRNTGTAAILVKVQDVEDQPPEFV--AVSSVTRVSEDVPVGTSVLQVKAVDGD 207
+ T +++ V+DV D+PP F+ + V + P T V ++A D D
Sbjct: 84 GHNAGIKY--TDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD 141
Query: 208 RGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTV 266
N I Y I G F++D +G + T + Y+L +K +++ V
Sbjct: 142 TDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKV 195
Query: 267 QPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHEN 326
T ++ P F P Y AEI EN
Sbjct: 196 DDRRFQST-PEERLSI-----------------------VGGKRAPQFYMPSYEAEIPEN 231
Query: 327 SVINTPVTFLGGVVPQVFDYDQGK-NGTFQMFIEGDMGTFEITPQK 371
++ + + + + + T + +G GTF I P
Sbjct: 232 QKKDSDIISI-----KAKSFADREIRYTLKAQGQGA-GTFNIGPTS 271
Score = 106 bits (266), Expect = 1e-25
Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 48/247 (19%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
AP+F + E + + I ++ + + ++
Sbjct: 216 APQF---YMPSYEAEIPE--NQKKDSDIISIKAKSFADREIRYTLK-------------- 256
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYEN---KFLYQLKILAVDRSNND 156
G F+I G++KL +LD+E+ +Y L + A + S
Sbjct: 257 ----------AQGQGAGTFNIGPT--SGIVKLAKELDFEDLRQPHVYSLIVTATEDSG-- 302
Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVS-SVTRVSEDVPVGTSVLQVKAVDGDRGINNKIL 215
+ + + ++V DV D P+F V ED+P+GTS+L+VKA+D D G N +I
Sbjct: 303 -GFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIE 361
Query: 216 YSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
Y +S F +D G I K+LD ++ + Y + ++ +P +
Sbjct: 362 YLVSDDH---FAVDS-NGIIVNNKQLDADNNNAY---YEFIVTAKDKG---EPPKSGVAT 411
Query: 276 VTIIITD 282
V + +
Sbjct: 412 VRVYTKN 418
Score = 90.4 bits (225), Expect = 4e-20
Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 44/195 (22%)
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS---------QGIFDIDPNTGNIFT 237
RV+ V +++ + D K ++ + + + G +
Sbjct: 3 RVTRAVRPTK---RIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV 59
Query: 238 LKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAK 297
K+ D E + P + +IIT++ + T
Sbjct: 60 KKKWDYE----------------------ELGPEKTIDFWVIITNMGHNAG---IKYTDN 94
Query: 298 TEVTIIITDVNDETPTFRSP--RYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQ 355
V I++ DVNDE P F + A + N+ NTPV L Q D D N +
Sbjct: 95 QRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTL-----QARDPDTDHNIHYF 149
Query: 356 MFIEGDMGTFEITPQ 370
+ + G FE+ +
Sbjct: 150 IVRDRTGGRFEVDER 164
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 133 bits (337), Expect = 3e-36
Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 42/248 (16%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P FI + ++ + P T ++ L+ DPD + N+
Sbjct: 103 PPYFINRPLP-MQAVVQL--NAPPNTPVFTLQARDPD------------------TDHNI 141
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSN--NDR 157
Y + V F + +G V++ G ++ Y L + A D++ +DR
Sbjct: 142 ----HYFI--VRDRTGGRFEVDERSG--VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDR 193
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
R T + + + P+F S + E+ + ++ +KA + +I Y+
Sbjct: 194 RFQSTPEERLSIVGG-KRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYT 249
Query: 218 ISSGSQ--GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
+ + Q G F+I P +G + KELD E + Y L + TE+S + +
Sbjct: 250 LKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH-VYSLIVTATEDS----GGFSTSVD 304
Query: 276 VTIIITDV 283
+TI +TDV
Sbjct: 305 LTIRVTDV 312
Score = 128 bits (324), Expect = 2e-34
Identities = 62/283 (21%), Positives = 102/283 (36%), Gaps = 52/283 (18%)
Query: 102 KVVYHLENVDGDEKDLFSIS------TVNGKGVIKLIGKLDYENKFLYQLK----ILAVD 151
K V+ LE +K+ F I TV G +++ K DYE + I+
Sbjct: 21 KSVFQLEK--ETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM 78
Query: 152 RSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSV--TRVSEDVPVGTSVLQVKAVDGDRG 209
N + T +++ V+DV D+PP F+ V + P T V ++A D D
Sbjct: 79 GHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD 138
Query: 210 INNKILYSISSG-SQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQP 268
N I Y I + G F++D +G + T + Y+L +K +++ V
Sbjct: 139 HN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKVDD 192
Query: 269 APTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSV 328
T E + I P F P Y AEI EN
Sbjct: 193 RRFQST-----------------------PEERLSIVG-GKRAPQFYMPSYEAEIPENQK 228
Query: 329 INTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDM-GTFEITPQ 370
++ + + + + + + + +G GTF I P
Sbjct: 229 KDSDI----ISI-KAKSFADREI-RYTLKAQGQGAGTFNIGPT 265
Score = 87.1 bits (216), Expect = 2e-19
Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 41/184 (22%)
Query: 198 VLQVKAVDGDRGINNKILYSISSG---------SQGIFDIDPNTGNIFTLKELDRESATS 248
+++ + D K ++ + + G + K+ D E
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE---- 61
Query: 249 NNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVN 308
+ P + +IIT++ + T V I++ DVN
Sbjct: 62 ------------------ELGPEKTIDFWVIITNMGHNAG---IKYTDNQRVIILVKDVN 100
Query: 309 DETPTF--RSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFE 366
DE P F R A + N+ NTPV L Q D D N + + + G FE
Sbjct: 101 DEPPYFINRPLPMQAVVQLNAPPNTPVFTL-----QARDPDTDHNIHYFIVRDRTGGRFE 155
Query: 367 ITPQ 370
+ +
Sbjct: 156 VDER 159
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 130 bits (328), Expect = 4e-36
Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
+ Y + D +F I+ ++G + + LD E + L+ AVD + N
Sbjct: 33 SLRYSVTGPGADQPPTGIFIINPISG--QLSVTKPLDRELIARFHLRAHAVDINGNQV-- 88
Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDR--GINNKILYS 217
I++ V D+ D PEF+ V E GT V+ V A+D D +N + Y
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 148
Query: 218 ISSG-----SQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAPT 271
I S S +F I+ TG+I T+ LDRE Y L I+ T+ +
Sbjct: 149 ILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ----YTLIIQATDMEGNPTYGLS 204
Query: 272 AKTEVTIIITD 282
I +TD
Sbjct: 205 NTATAVITVTD 215
Score = 96.7 bits (241), Expect = 1e-23
Identities = 37/196 (18%), Positives = 58/196 (29%), Gaps = 50/196 (25%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELD 242
+ E+ G ++ + DR N + YS++ GIF I+P +G + K LD
Sbjct: 9 LPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI 302
RE + L D+ ++ I
Sbjct: 68 RELIAR----FHL---------------------RAHAVDIN------GNQVENPIDIVI 96
Query: 303 IITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQ--GKNG------TF 354
+ D+ND P F + + E S T V + D D NG
Sbjct: 97 NVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTV-----TAIDADDPNALNGMLRYRILS 151
Query: 355 QMFIEGDMGTFEITPQ 370
Q F I +
Sbjct: 152 QAPSTPSPNMFTINNE 167
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 127 bits (321), Expect = 5e-35
Identities = 61/186 (32%), Positives = 83/186 (44%), Gaps = 15/186 (8%)
Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
+ Y L +F I +G I LD E + Y L AVDR N
Sbjct: 35 NIKYILSGEGAGT--IFVIDDKSG--NIHATKTLDREERAQYTLMAQAVDRDTNRPL-EP 89
Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSI 218
+ +VKVQD+ D PPEF+ V E VGTSV+QV A D D G + K++YSI
Sbjct: 90 PSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSI 149
Query: 219 SSGSQGIFDIDPNTGNIFT-LKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVT 277
G F ++ TG I T L +DRE+ Y + I+ + + T+VT
Sbjct: 150 LEGQP-YFSVEAQTGIIRTALPNMDREAKEE----YHVVIQAK-DMGGHMGGLSGTTKVT 203
Query: 278 IIITDV 283
I +TD
Sbjct: 204 ITLTDD 209
Score = 97.7 bits (244), Expect = 5e-24
Identities = 42/188 (22%), Positives = 58/188 (30%), Gaps = 42/188 (22%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRESA 246
+ E ++ D D G + I Y +S G+ IF ID +GNI K LDRE
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREER 69
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAP-TAKTEVTIIIT 305
Y L D P +E + +
Sbjct: 70 AQ----YTL---------------------MAQAVDRD------TNRPLEPPSEFIVKVQ 98
Query: 306 DVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYD---QGKNGTFQMFIEGDM 362
D+ND P F Y A + E S + T V + D D G + I
Sbjct: 99 DINDNPPEFLHEIYHANVPERSNVGTSVIQV-----TASDADDPTYGNSAKLVYSILEGQ 153
Query: 363 GTFEITPQ 370
F + Q
Sbjct: 154 PYFSVEAQ 161
Score = 50.7 bits (122), Expect = 1e-07
Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 29/140 (20%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P F + E + GT + ++ +D D T+G
Sbjct: 104 PPEF---LHEIYHANVPE--RSNVGTSVIQVTASDADDP--TYGNSA------------- 143
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKL-IGKLDYENKFLYQLKILAVDRSNNDRR 158
K+VY + FS+ G +I+ + +D E K Y + I A D +
Sbjct: 144 --KLVYSILEGQ----PYFSVEAQTG--IIRTALPNMDREAKEEYHVVIQAKDMGGHMGG 195
Query: 159 NTGTAAILVKVQDVEDQPPE 178
+GT + + + D +
Sbjct: 196 LSGTTKVTITLTDDYKDDDK 215
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 126 bits (319), Expect = 6e-35
Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 15/185 (8%)
Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
+ Y L DLF I+ G I+ +LD E K +Y L+ AV+R
Sbjct: 34 SLKYIL--SGDGAGDLFIINENTG--DIQATKRLDREEKPVYILRAQAVNRRTGRPV-EP 88
Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSI 218
+ ++K+ D+ D P F V E VGT V+QV A D D G + K++YSI
Sbjct: 89 ESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSI 148
Query: 219 SSGSQGIFDIDPNTGNIFT-LKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVT 277
G F ++ TG I T L +DRE+ Y + I+ + + + T V
Sbjct: 149 LQGQP-YFSVESETGIIKTALLNMDRENREQ----YQVVIQAKDMGGQMGG-LSGTTTVN 202
Query: 278 IIITD 282
I +TD
Sbjct: 203 ITLTD 207
Score = 100 bits (252), Expect = 3e-25
Identities = 40/187 (21%), Positives = 61/187 (32%), Gaps = 40/187 (21%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRESA 246
+ E + D DRG + + Y +S G+ +F I+ NTG+I K LDRE
Sbjct: 10 LEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEK 68
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD 306
YIL + + ++E I I D
Sbjct: 69 PV----YIL---------------------RAQAVN-----RRTGRPVEPESEFIIKIHD 98
Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQ---GKNGTFQMFIEGDMG 363
+ND P F Y A + E + + T V + D D G + I
Sbjct: 99 INDNEPIFTKDVYTATVPEMADVGTFVVQV-----TATDADDPTYGNSAKVVYSILQGQP 153
Query: 364 TFEITPQ 370
F + +
Sbjct: 154 YFSVESE 160
Score = 45.0 bits (107), Expect = 1e-05
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 29/133 (21%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P F + + E GTF+ ++ D D T+G
Sbjct: 103 EPIF---TKDVYTATVPE--MADVGTFVVQVTATDADDP--TYGNSA------------- 142
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKL-IGKLDYENKFLYQLKILAVDRSNNDRR 158
KVVY + FS+ + G+IK + +D EN+ YQ+ I A D
Sbjct: 143 --KVVYSILQGQ----PYFSVESET--GIIKTALLNMDRENREQYQVVIQAKDMGGQMGG 194
Query: 159 NTGTAAILVKVQD 171
+GT + + + D
Sbjct: 195 LSGTTTVNITLTD 207
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 126 bits (318), Expect = 9e-35
Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 39/233 (16%)
Query: 53 IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG 112
+ ++E D+P + +L + + +Y +
Sbjct: 7 MHIREEIDSPLPHHVGKLTSSVGNK------------------------NAMYII--EGE 40
Query: 113 DEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDV 172
+F + +G I +LD E K Y+L +DR NN + ++KV D+
Sbjct: 41 SANTIFKVQGYDG--DIYAFERLDREKKAEYELTAHIIDRRNNRSL-EPPSKFIIKVSDI 97
Query: 173 EDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSISSGSQGIFDID 229
D P FV V E +GTSV +V A D D + + Y I G++ F +D
Sbjct: 98 NDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE-YFTVD 156
Query: 230 PNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
+ +LDRES ++ Y + +K + ++ V I +TD
Sbjct: 157 DSGVIFTARADLDRESQSA----YEIIVKAKDALG--LTGESSTATVIIRLTD 203
Score = 92.4 bits (230), Expect = 3e-22
Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 43/191 (22%)
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRES 245
R D P+ V ++ + G N +Y I + IF + G+I+ + LDRE
Sbjct: 10 REEIDSPLPHHVGKLTSSVG----NKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREK 65
Query: 246 ATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIIT 305
Y L + + + ++ I ++
Sbjct: 66 KAE----YELTAHII--------------------------DRRNNRSLEPPSKFIIKVS 95
Query: 306 DVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQ---GKNGTFQMFIEGDM 362
D+ND P F + + E S + T VT + D D + T I
Sbjct: 96 DINDNAPIFVQKIFNGSVPEMSRLGTSVTKV-----TAEDADDPTVAGHATVTYQIIKGN 150
Query: 363 GTFEITPQKII 373
F + +I
Sbjct: 151 EYFTVDDSGVI 161
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 124 bits (312), Expect = 2e-33
Identities = 39/293 (13%), Positives = 67/293 (22%), Gaps = 77/293 (26%)
Query: 47 EQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYH 106
+ +L D AGT + + + + ++ H
Sbjct: 4 SRDAYWEKLYV--DQAAGTPLLYVHALRDAPEEVPSF------------------RLGQH 43
Query: 107 LE---NVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQ------------LKILAVD 151
L E + I G ++ L LD+ + LK+
Sbjct: 44 LYGTYRTRLHENNWIRIQEDTG--LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSP 101
Query: 152 RSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT----------RVSEDVPVGTSVLQV 201
S + V P ++ R+ E+ P GT
Sbjct: 102 TSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFR 161
Query: 202 KAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTE 261
+ Y + G F P++ + T LDRE Y L T
Sbjct: 162 LLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREK----YELVAVCTV 217
Query: 262 ESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTF 314
+ + + D +D P F
Sbjct: 218 HAGA--------------------------REEVVMVPFPVTVYDEDDSAPEF 244
Score = 99 bits (249), Expect = 1e-24
Identities = 25/204 (12%), Positives = 50/204 (24%), Gaps = 41/204 (20%)
Query: 186 TRVSEDVPVGTSVLQVKAVDGDR--GINNKILYSI------SSGSQGIFDIDPNTGNIFT 237
++ D GT +L V A+ + ++ + I +TG ++
Sbjct: 10 EKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYL 69
Query: 238 LKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAK 297
+ LD + + +T+ + + +
Sbjct: 70 QRSLDHS-----------------SWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWP 112
Query: 298 TEVTIIITDVNDETP----------TFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYD 347
+ + N P F R I EN T F +
Sbjct: 113 GCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFR-----LLPVQF 167
Query: 348 QGKNGTFQ-MFIEGDMGTFEITPQ 370
+ +EG+ F P
Sbjct: 168 LCPQISVAYRLLEGEGLPFRSAPD 191
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 123 bits (310), Expect = 2e-33
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 22/192 (11%)
Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
KV Y + + D +F I G +K+ LD E Y L AV +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETG--WLKVTQPLDREAIAKYILYSHAVSSNGEAV-- 88
Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGI---NNKILY 216
I++ V D D PEF V+E GTSV++V A D D + N I Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 217 SISSG-----SQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAP 270
+I S + +F ++ +TG I L LDRES + Y L ++ +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT----YTLVVQAADLQ---GEGL 201
Query: 271 TAKTEVTIIITD 282
+ + I + D
Sbjct: 202 STTAKAVITVKD 213
Score = 96.3 bits (240), Expect = 2e-23
Identities = 35/170 (20%), Positives = 52/170 (30%), Gaps = 42/170 (24%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELD 242
E+ G + + +R K+ YSI+ G+F I+ TG + + LD
Sbjct: 9 CPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLD 67
Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI 302
RE+ YIL A E+ I
Sbjct: 68 REAIAK----YIL---------------------YSHAVSSN------GEAVEDPMEIVI 96
Query: 303 IITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNG 352
+TD ND P F + + E +V T V + D D N
Sbjct: 97 TVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKV-----SATDADDDVNT 141
Score = 45.0 bits (107), Expect = 1e-05
Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 27/131 (20%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P F Q + E GT + ++ D D DV T+ +
Sbjct: 105 RPEF---TQEVFEGSVAE--GAVPGTSVMKVSATDADDDVNTY----NA----------- 144
Query: 100 MLKVVYHL--ENVDGDEKDLFSISTVNGKGVIK-LIGKLDYENKFLYQLKILAVDRSNND 156
+ Y + ++ + K++F+++ GVI L LD E+ Y L + A D
Sbjct: 145 --AIAYTIVSQDPELPHKNMFTVNRDT--GVISVLTSGLDRESYPTYTLVVQAADLQGEG 200
Query: 157 RRNTGTAAILV 167
T A I V
Sbjct: 201 LSTTAKAVITV 211
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 122 bits (309), Expect = 2e-33
Identities = 61/240 (25%), Positives = 88/240 (36%), Gaps = 39/240 (16%)
Query: 53 IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG 112
I + E P + ++ +D G + ++ VD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPE-----GSKF---------------RLTGKG--VDQ 45
Query: 113 DEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDV 172
D K F I+ G + + LD E YQL + D S G + V V D
Sbjct: 46 DPKGTFRINENTG--SVSVTRTLDRETIATYQLYVETTDASGKTL--EGPVPLEVIVIDQ 101
Query: 173 EDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDR--GINNKILYSISSG-----SQGI 225
D P F + V E P GT+V+++ A D D N + Y+I S +
Sbjct: 102 NDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNM 161
Query: 226 FDIDPNTGNIFTLK---ELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
F IDP G+I T+ LDRE T N Y L I+ + + T TI+I D
Sbjct: 162 FYIDPEKGDIVTVVSPALLDRE--TLENPKYELIIEAQ-DMAGLDVGLTGTATATIVIDD 218
Score = 98.2 bits (245), Expect = 3e-24
Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 33/159 (20%)
Query: 180 VAVSSVT-RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-SQGIFDIDPNTGNIFT 237
+ VS + ++ P V +V D G ++ +G F I+ NTG++
Sbjct: 3 IVVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSV 62
Query: 238 LKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAK 297
+ LDRE+ + Y L + TD +
Sbjct: 63 TRTLDRETIAT----YQL---------------------YVETTDASG------KTLEGP 91
Query: 298 TEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFL 336
+ +I+ D ND P FR Y+ + E S T V +
Sbjct: 92 VPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRM 130
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 89.1 bits (222), Expect = 6e-22
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 167 VKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGI- 225
D P F ++E+ GT +LQ++A D D G+N +I Y + ++ +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 226 --FDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDV 283
+D +G + L +DRE + + QP T K V + I D
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQ----LRFTVMARDRG---QPPKTDKATVVLNIKDE 114
Score = 63.3 bits (155), Expect = 1e-12
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 29/138 (21%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
+PRF E++ L E ++ GT I +LR AD D GV G
Sbjct: 11 SPRF---EKSVYEADLAE--NSAPGTPILQLRAADLD-----VGVNG------------- 47
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
++ Y + L + +G + ++ ++D E + ++A DR +
Sbjct: 48 --QIEYVFGAATESVRRLLRLDETSG--WLSVLHRIDREEVNQLRFTVMARDRGQPPK-- 101
Query: 160 TGTAAILVKVQDVEDQPP 177
T A +++ ++D D P
Sbjct: 102 TDKATVVLNIKDENDNVP 119
Score = 40.5 bits (96), Expect = 1e-04
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 304 ITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV--FDYDQGKNG----TFQMF 357
+ ND +P F Y A++ ENS TP+ Q+ D D G NG F
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPIL-------QLRAADLDVGVNGQIEYVFGAA 56
Query: 358 IEGDMGTFEITPQ 370
E +
Sbjct: 57 TESVRRLLRLDET 69
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 86.4 bits (215), Expect = 5e-21
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 167 VKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISS----GS 222
D P F + E+ PVGTSV+Q+ A D D G N +I Y + +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 223 QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
+ +F ++ TG I + LDRE + + + ++ + A+ VTI +TD
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAI----HKVTVLASD-----GSSTPARATVTINVTD 112
Query: 283 V 283
V
Sbjct: 113 V 113
Score = 53.2 bits (129), Expect = 3e-09
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 32/134 (23%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P F ++ ++ + + E + P GT + +L D D G
Sbjct: 11 RPVF---KEGQVEVHIPE--NAPVGTSVIQLHATDAD-----IGSNA------------- 47
Query: 100 MLKVVYHL-ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRR 158
++ Y V K LF+++ G +I + LD E ++++ +LA D S+
Sbjct: 48 --EIRYIFGAQVAPATKRLFALNNTTG--LITVQRSLDREETAIHKVTVLASDGSS---- 99
Query: 159 NTGTAAILVKVQDV 172
A + + V DV
Sbjct: 100 TPARATVTINVTDV 113
Score = 39.0 bits (92), Expect = 4e-04
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 304 ITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVF--DYDQGKNG 352
+ ND P F+ + I EN+ + T V Q+ D D G N
Sbjct: 4 GSSGNDNRPVFKEGQVEVHIPENAPVGTSVI-------QLHATDADIGSNA 47
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 79.3 bits (196), Expect = 3e-18
Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 37/133 (27%)
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-----SGSQGIFDIDPNTGNIFTLKEL 241
R ED+ + ++ + D KI Y + GIF + +TG + L
Sbjct: 20 REGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSIL 78
Query: 242 DRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVT 301
DRE ++L T D E+
Sbjct: 79 DREETPF----FLL---------------------TGYALDAR------GNNVEKPLELR 107
Query: 302 IIITDVNDETPTF 314
I + D+ND P F
Sbjct: 108 IKVLDINDNEPVF 120
Score = 60.0 bits (146), Expect = 1e-11
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 27/129 (20%)
Query: 53 IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHL--ENV 110
+ L+EG D I ++ +D E + K+ Y + +
Sbjct: 17 VALREGEDLSKKNPIAKIH-SDLA------------------EERGL--KITYKYTGKGI 55
Query: 111 DGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQ 170
+F + G + + LD E + L A+D N+ + +KV
Sbjct: 56 TEPPFGIFVFNKDTG--ELNVTSILDREETPFFLLTGYALDARGNNV--EKPLELRIKVL 111
Query: 171 DVEDQPPEF 179
D+ D P F
Sbjct: 112 DINDNEPVF 120
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 78.2 bits (193), Expect = 3e-18
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRES 245
++ P V +V D G ++ +G F I+ NTG++ + LDRE+
Sbjct: 11 PENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRET 70
Query: 246 ATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
+ Y L ++ T+ S + +I+ D
Sbjct: 71 IAT----YQLYVETTDAS---GKTLEGPVPLEVIVID 100
Score = 46.6 bits (111), Expect = 5e-07
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 26/119 (21%)
Query: 53 IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG 112
I + E P + ++ +D G + ++ VD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPE-----GSKF---------------RLTGKG--VDQ 45
Query: 113 DEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD 171
D K F I+ G + + LD E YQL + D S G + V V D
Sbjct: 46 DPKGTFRINENTG--SVSVTRTLDRETIATYQLYVETTDASGKTL--EGPVPLEVIVID 100
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 75.4 bits (186), Expect = 5e-17
Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 37/132 (28%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELD 242
+ E+ G ++ + R N + YS++ GIF I+P +G + K LD
Sbjct: 11 LPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 69
Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI 302
RE + L D+ ++ I
Sbjct: 70 RELIAR----FHL---------------------RAHAVDIN------GNQVENPIDIVI 98
Query: 303 IITDVNDETPTF 314
+ D+ND P F
Sbjct: 99 NVIDMNDNRPEF 110
Score = 58.4 bits (142), Expect = 5e-11
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
+ Y + D +F I+ ++G + + LD E + L+ AVD + N
Sbjct: 35 SLRYSVTGPGADQPPTGIFIINPISG--QLSVTKPLDRELIARFHLRAHAVDINGNQV-- 90
Query: 160 TGTAAILVKVQDVEDQPPEF 179
I++ V D+ D PEF
Sbjct: 91 ENPIDIVINVIDMNDNRPEF 110
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 72.0 bits (177), Expect = 5e-16
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 189 SEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESAT 247
++ +P V +V D G K+ +GIF I+ N+G + K LDRE+
Sbjct: 12 NQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIP 71
Query: 248 SNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
S Y L+++ T+E+ ++ I++ D
Sbjct: 72 S----YQLQVETTDEN---GKTIEGPVDLEILVID 99
Score = 46.2 bits (110), Expect = 7e-07
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 26/119 (21%)
Query: 53 IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG 112
I + E P + R+ +D + G G VD
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGS-KIKLYGKG---------------------VDQ 44
Query: 113 DEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD 171
+ K +F I+ +G + + LD E YQL++ D + G + + V D
Sbjct: 45 EPKGIFKINENSG--EVSVTKALDREAIPSYQLQVETTDENGKTI--EGPVDLEILVID 99
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 72.1 bits (177), Expect = 5e-16
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 190 EDVPVGTSVLQVKAVDGDRGINNKILYSISSG-SQGIFDIDPNTGNIFTLKELDRESATS 248
+ P SV +V +G G ++ +GIF I+ +G++ + LDRE+ +
Sbjct: 13 QRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIAN 72
Query: 249 NNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
Y LE++VT+ S + I + D
Sbjct: 73 ----YELEVEVTDLS---GKIIDGPVRLDISVID 99
Score = 44.0 bits (104), Expect = 4e-06
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 108 ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILV 167
+ VD D K +F I+ ++G + + LD E Y+L++ D S G + +
Sbjct: 40 KGVDQDPKGIFRINEISG--DVSVTRPLDREAIANYELEVEVTDLSGKII--DGPVRLDI 95
Query: 168 KVQD 171
V D
Sbjct: 96 SVID 99
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 70.5 bits (173), Expect = 2e-15
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 190 EDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRESATS 248
E + D DRG + I Y +S G+ +F ID TG+I ++ LDRE +
Sbjct: 13 EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQ 71
Query: 249 NNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
Y L + + + ++E I I D
Sbjct: 72 ----YTLRAQALD--RRTGRPMEPESEFIIKIQD 99
Score = 47.8 bits (114), Expect = 2e-07
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
+ Y L +F+I G I I +LD E + Y L+ A+DR
Sbjct: 35 SIKYILS--GEGAGIVFTIDDTTG--DIHAIQRLDREERSQYTLRAQALDRRTGRPM-EP 89
Query: 162 TAAILVKVQD 171
+ ++K+QD
Sbjct: 90 ESEFIIKIQD 99
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 68.6 bits (168), Expect = 1e-14
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 13/111 (11%)
Query: 177 PEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPN 231
P V E+ G + + ++ K+ YSI+ G+F I+
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 232 TGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
TG + + LDRE + Y L + A E+ I +TD
Sbjct: 61 TGWLKVTEPLDRERIAT----YTLFSHAVSSN---GNAVEDPMEILITVTD 104
Score = 46.6 bits (111), Expect = 6e-07
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
KV Y + + D +F I G +K+ LD E Y L AV + N
Sbjct: 37 KVFYSITGQGADTPPVGVFIIERETG--WLKVTEPLDRERIATYTLFSHAVSSNGNAV-- 92
Query: 160 TGTAAILVKVQD 171
IL+ V D
Sbjct: 93 EDPMEILITVTD 104
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 66.3 bits (162), Expect = 6e-14
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 183 SSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKEL 241
+ + + E ++ D D G + KI Y +S G+ IF I+ TG+I +K L
Sbjct: 5 NQMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRL 63
Query: 242 DRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
DRE Y L + + +E I + D
Sbjct: 64 DREEKAE----YTLTAQAVD--FETNKPLEPPSEFIIKVQD 98
Score = 46.6 bits (111), Expect = 5e-07
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
K+ Y L +F I+ + G I I +LD E K Y L AVD N
Sbjct: 34 KIKYILS--GDGAGTIFQINDITG--DIHAIKRLDREEKAEYTLTAQAVDFETNKPL-EP 88
Query: 162 TAAILVKVQD 171
+ ++KVQD
Sbjct: 89 PSEFIIKVQD 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 2e-07
Identities = 55/374 (14%), Positives = 107/374 (28%), Gaps = 85/374 (22%)
Query: 12 VKEKHVLLIGTYLLLSAIL----------VDSSVSGN------------RAPRFIIDEQT 49
+ K + GT L +L V+ + N R P +
Sbjct: 55 IMSKDAVS-GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 50 EIVIRLKEGPDTPAGTFIYR----------LRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
E RL A + R L P +VL GV G G + ++
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL- 172
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGV--IKLIGKLDYENKFLYQLKILAVD-RSNND 156
K + + + L + L L+ L N
Sbjct: 173 -------------SYK----VQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTR---VSEDVPVGTSVLQVKAVDGDRGINNK 213
R+ ++ I +++ ++ + + V +V + A + ++ K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAFN----LSCK 267
Query: 214 ILYSISSGSQGIFD-IDPNTGNIFTLKELDRESATSNNG----AYILEIKVT---EESKT 265
IL +++ + + D + T +L + T + L+ + E T
Sbjct: 268 IL--LTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 266 VQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTE--VTIIITDVNDETPTFRSPRYVA-E 322
P ++II + + T + TII + +N P +
Sbjct: 325 TNP-----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 323 IHENSVINTPVTFL 336
+ S + P L
Sbjct: 380 VFPPSA-HIPTILL 392
Score = 39.5 bits (91), Expect = 0.002
Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 45/128 (35%)
Query: 103 VVYHLENVDGDEK-DLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
+ +HL+N++ E+ LF + LD+ +FL + KI R+
Sbjct: 477 IGHHLKNIEHPERMTLFR----------MVF--LDF--RFL-EQKI----------RHDS 511
Query: 162 TA-----AILVKVQDVE-------DQPPEFVAVSS-----VTRVSEDVPVG--TSVLQVK 202
TA +IL +Q ++ D P++ + + + ++ E++ T +L++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 203 AVDGDRGI 210
+ D I
Sbjct: 572 LMAEDEAI 579
Score = 32.9 bits (74), Expect = 0.18
Identities = 39/266 (14%), Positives = 77/266 (28%), Gaps = 77/266 (28%)
Query: 15 KHVLLIGTYL-------LLSA------ILV---DSSVSGNRAPRFIIDEQTEIVIRLKEG 58
++ LL+ L +A IL+ V+ + T I L
Sbjct: 244 ENCLLV---LLNVQNAKAWNAFNLSCKILLTTRFKQVT------DFLSAATTTHISLDHH 294
Query: 59 PDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDL- 117
T LT D E +++LK + D +DL
Sbjct: 295 SMT------------------LT-------PD----EVKSLLLKYL------DCRPQDLP 319
Query: 118 FSISTVNGKGVIKLIGKL--DYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQ 175
+ T N + + +I + D + + N D+ T + V + +
Sbjct: 320 REVLTTNPR-RLSIIAESIRDGLATWDNWKHV------NCDKLTT-IIESSLNVLEPAEY 371
Query: 176 PPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNI 235
F +S V + T +L + D + ++ + S + + P
Sbjct: 372 RKMFDRLS-VFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKES-T 425
Query: 236 FTLKELDRESATSNNGAYILEIKVTE 261
++ + E Y L + +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVD 451
Score = 32.1 bits (72), Expect = 0.34
Identities = 20/149 (13%), Positives = 52/149 (34%), Gaps = 35/149 (23%)
Query: 227 DIDPNTGNIFTLKELDR--ESATSNNGAY-ILEIKVTEESKTVQPA--PTAKTEVTIIIT 281
D+ +I + +E+D S + +G + ++++ + VQ + +++
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 282 DVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVP 341
+ E + QP+ T + R + + N F V
Sbjct: 97 PIKTEQR--QPSM---------------MTRMYIEQR-------DRLYNDNQVFAKYNVS 132
Query: 342 QVFDYDQGKNGTFQM------FIEGDMGT 364
++ Y + + ++ I+G +G+
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGS 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-06
Identities = 55/339 (16%), Positives = 107/339 (31%), Gaps = 119/339 (35%)
Query: 19 LIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFI----------- 67
L+G + SA + + + + I+ L+ +TP ++
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 68 ------Y----RLRGADPDGDVLTF--GVQGHGHDVIR-------------IENLNVMLK 102
Y +L G P G++ ++ G GH ++ ++ +
Sbjct: 243 VIQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 103 VVYHL-------------------ENVDGDEKD---LFSISTVNGKGVIKLIGKLDYENK 140
V++ + ++++ +E + SIS + + V + K N
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT---NS 358
Query: 141 FLYQLKILAVDRSN-NDRRN---TGTAAIL---------VKVQDVEDQ---P-----PEF 179
L K + + S N +N +G L K DQ P +F
Sbjct: 359 HLPAGKQVEI--SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 180 VAVSSVTR---VSEDVPVGTSVLQ--VKAVDGDRGINN--------KI-LYSISSGSQGI 225
R V+ P + +L ++ D NN +I +Y GS
Sbjct: 417 -----SNRFLPVA--SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS--- 466
Query: 226 FDIDPNTGN--------IFTLKELDRESATSNNGAYILE 256
D+ +G+ I L + E+ T +IL+
Sbjct: 467 -DLRVLSGSISERIVDCIIRLP-VKWETTTQFKATHILD 503
Score = 47.0 bits (111), Expect = 8e-06
Identities = 62/396 (15%), Positives = 115/396 (29%), Gaps = 143/396 (36%)
Query: 19 LIGTYLLLSAILVDSSVSGNRAP--RFIIDE-------QTEI---VIRLKEGPDTP---- 62
L+G +L + LV+ S G + E +I +L + DT
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 63 ---------AGTFIYR----------LRGADPDGDV---LTFGVQGHGHDVIRIENLNVM 100
A R R +G+ FG QG+ D
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVAIFGGQGNTDD---------- 168
Query: 101 LKVVYHLENVDGDE-KDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
Y +E +DL+ V +IK + L L + ++
Sbjct: 169 ----Y-F-----EELRDLYQTYHVLVGDLIKFSAET---------LSELIRTTLDAEKVF 209
Query: 160 TGTAAILVKVQDVEDQPP-EFVAVSSVTRVSEDVP-VGTSVLQVKAVDGDRGINNKILYS 217
T IL +++ + P +++ S+ +S P +G V+Q+ Y
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLL--SIP-IS--CPLIG--VIQLAH------------YV 250
Query: 218 ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKT------------ 265
+++ G G + + + ++ E+ +
Sbjct: 251 VTAKLLGF-----TPGELR-----SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 266 ----------VQPAPTAKTEVTIIITDVTEESKTVQPAP------TAKTEVTIIITDVND 309
+ P + I+ D E ++ V P+P + +V + N
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPS-ILEDSLENNEGV-PSPMLSISNLTQEQVQDYVNKTNS 358
Query: 310 ETPTFRSPRYVAEIHENSVINTPVTFLGGVV---PQ 342
P + EI S++N VV PQ
Sbjct: 359 HLPAGKQ----VEI---SLVNGAKNL---VVSGPPQ 384
Score = 38.9 bits (90), Expect = 0.003
Identities = 47/292 (16%), Positives = 78/292 (26%), Gaps = 118/292 (40%)
Query: 27 SAILVDSSVSGNRAPRFIIDEQTEIVIRLK-EGPD-----T----PA----GTFIYRL-- 70
SA++ ++ V G I E E T PA +
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 71 -RGADPDGDVLTFGVQGH--GHDVIRIENLNVMLKVVY----HLENVDGDEKDLFSISTV 123
+G P GH G E Y L +V SI ++
Sbjct: 1749 SKGLIPADAT----FAGHSLG------E---------YAALASLADV-------MSIESL 1782
Query: 124 NGKGVIKLI---GKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFV 180
++++ G AV R R N G AI P V
Sbjct: 1783 -----VEVVFYRGMTMQV----------AVPRDELGRSNYGMIAIN----------PGRV 1817
Query: 181 AVS----SVTRVSEDVPVGT-SVLQVKAVDGDRGIN-NKILYSISSGSQGIFDIDPNTGN 234
A S ++ V E V T ++++ +N N Q + G+
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEI--------VNYN------VENQQYV--A---AGD 1858
Query: 235 IFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEE 286
+ L + V K +Q + + ++ + +V
Sbjct: 1859 LRALDTV---------------TNVLNFIK-LQKIDIIELQKSLSLEEVEGH 1894
Score = 36.2 bits (83), Expect = 0.020
Identities = 39/202 (19%), Positives = 63/202 (31%), Gaps = 77/202 (38%)
Query: 2 INLLNAGVNRVKEKHVL------LIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRL 55
I+L+N N V+ L G L L S + +R P F + ++
Sbjct: 368 ISLVNGAKN-----LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-F---SERKLKFSN 418
Query: 56 KEGP-DTPAGTF--IYRLRGADP--DGDVLTFGVQGHGHDVIRIENLNVMLKV-VYHLEN 109
+ P +P F L A + D++ V + D +++ VY
Sbjct: 419 RFLPVASP---FHSHL-LVPASDLINKDLVKNNVSFNAKD----------IQIPVYDTF- 463
Query: 110 VDGDEKDLFSIST--------------VN---------------GKGVIKLIGKLDYENK 140
DG DL +S V G G +G L + NK
Sbjct: 464 -DG--SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 141 FLYQLK----ILA--VDRSNND 156
I+A +D + +D
Sbjct: 521 ---DGTGVRVIVAGTLDINPDD 539
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 39.5 bits (93), Expect = 3e-04
Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 38/135 (28%)
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYS-----ISSGSQGIFDIDPNTGNIFTLKEL 241
V E+ G+ V + D G++ + L + +S G++ + ++ +GN+ ++L
Sbjct: 16 SVLEETDRGSLVGNLAK---DLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKL 72
Query: 242 DRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVT 301
DRE + IL +V +S P +
Sbjct: 73 DREELCGSTNPCILHFQVLLKS------------------------------PVQFIQGE 102
Query: 302 IIITDVNDETPTFRS 316
I + DVND P F
Sbjct: 103 IQLQDVNDHAPEFME 117
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 34.1 bits (79), Expect = 0.015
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYS-----ISSGSQGIFDIDPNTGNIFTLKEL 241
+ E+ GT V ++ D G+ L S + +++ G +F +
Sbjct: 8 SIPEEAKHGTFVGRIAQ---DLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRI 64
Query: 242 DRE 244
DRE
Sbjct: 65 DRE 67
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 31.9 bits (72), Expect = 0.44
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 15/47 (31%)
Query: 45 IDE-------QTEIVIRLKEGPDTPAGTF--------IYRLRGADPD 76
+DE Q I+ + GP+ F IYR R A+P
Sbjct: 406 VDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPL 452
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate,
gamma-elimination, direct sulfhydrylation, CY
metabolism, protein thiocarboxylate, TR; 2.20A
{Wolinella succinogenes}
Length = 430
Score = 28.7 bits (65), Expect = 4.0
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 70 LRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDL 117
R A G +LTF ++ ++ LK++ N+ D K L
Sbjct: 343 FRYA---GSILTFELESKEASYRFMDA----LKLIRRATNI-HDNKSL 382
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine
sulfhydrase, structural genomic structural
genomics/proteomics initiative; HET: PLP; 2.60A {Thermus
thermophilus} SCOP: c.67.1.3
Length = 421
Score = 28.3 bits (64), Expect = 4.2
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
Query: 77 GDVLTFGVQGHGHDVIR--IENLNVMLKVVYHLENVDGDEKDL 117
G VLTFG++G G++ + I LK++ HL NV GD + L
Sbjct: 337 GAVLTFGLKG-GYEAAKRFISR----LKLISHLANV-GDTRTL 373
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 27.8 bits (62), Expect = 5.6
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 90 DVIRIENLNVMLKVVYH-LENVDGDEKDLFSISTVNGKGVIKLIGKL 135
D +++L++ K++ + + + S ST+ G GV +
Sbjct: 153 DKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITA 199
>1j1t_A Alginate lyase; guluronate, mannuronate; 2.00A {Alteromonas SP}
SCOP: b.29.1.18
Length = 233
Score = 27.6 bits (60), Expect = 6.0
Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 43/187 (22%)
Query: 207 DRGINNKILYSISSGSQGIFDIDPNTGNIFTLKE------LDRESATSNNGAYILEIKVT 260
D + I SI+SGS IFD++ + N L+ + T N + E KV
Sbjct: 1 DNSNGSTIPSSITSGS--IFDLEGDNPNPLVDDSTLVFVPLEAQHITPNGNGWRHEYKVK 58
Query: 261 EESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYV 320
E + E T+ + ++++ KT+ +
Sbjct: 59 ESLRVAMTQTYEVFEATVKV-EMSDGGKTI-----------------------------I 88
Query: 321 AEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIE-----GDMGTFEITPQKIINE 375
++ H + ++ F+ NG F +++ G+ F +
Sbjct: 89 SQHHASDTGTISKVYVSDTDESGFNDSVANNGIFDVYVRLRNTSGNEEKFALGTMTSGET 148
Query: 376 ASFLIRN 382
+ + N
Sbjct: 149 FNLRVVN 155
>3tj8_A Urease accessory protein UREE; metal binding protein; 1.59A
{Helicobacter pylori} PDB: 3tj9_A 3tja_A 3l9z_A 3la0_A
3nxz_A 3ny0_A
Length = 170
Score = 27.1 bits (60), Expect = 7.3
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 42 RFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFG------VQGHGHDVIRI- 94
RF + +I IRLK+ P L GD+L V +VI I
Sbjct: 36 RFKTRQGKDIAIRLKDAPKLG-------LS----QGDILFKEEKEIIAVNILDSEVIHIQ 84
Query: 95 -ENLNVMLKVVYHLEN 109
+++ + K+ Y + N
Sbjct: 85 AKSVAEVAKICYEIGN 100
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer,
seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora
crassa} SCOP: b.69.10.1
Length = 365
Score = 27.2 bits (60), Expect = 8.9
Identities = 7/75 (9%), Positives = 18/75 (24%), Gaps = 26/75 (34%)
Query: 159 NTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSI 218
T ++ + + +D+P ++ K +Y
Sbjct: 24 EKLTCKLIKRTEIPQDEPISWMTFDH--------------------------ERKNIYGA 57
Query: 219 SSGSQGIFDIDPNTG 233
+ F + T
Sbjct: 58 AMKKWSSFAVKSPTE 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.375
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,742,317
Number of extensions: 364958
Number of successful extensions: 992
Number of sequences better than 10.0: 1
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 108
Length of query: 383
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 288
Effective length of database: 4,049,298
Effective search space: 1166197824
Effective search space used: 1166197824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)