RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11780
(383 letters)
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 71.2 bits (173), Expect = 5e-16
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTG 233
++ P FV S VSED+ G ++ + A D D+ K+ Y I + ++ + G
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60
Query: 234 NIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDV 283
+ LDRES N Y + + VT++ T + + + DV
Sbjct: 61 IVTGNGNLDRESEYVKNNTYTVIMLVTDDG---VSVGTGTGTLILHVLDV 107
Score = 33.8 bits (76), Expect = 0.008
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 309 DETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTF 365
+E P F ++ E+ + D D+ + FI D +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKII-----SLVAQDPDKQQIQKLSYFIGNDPARW 52
Score = 33.0 bits (74), Expect = 0.013
Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 36/139 (25%)
Query: 38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
N AP F + + E D G I L DPD + G+D
Sbjct: 1 NEAPFF---VPAVSRVDVSE--DLSRGEKIISLVAQDPDKQQIQKLSYFIGND------- 48
Query: 98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFL----YQLKILAVDRS 153
+++ NG + G LD E++++ Y + +L D
Sbjct: 49 ----------------PARWLTVNKDNGI--VTGNGNLDRESEYVKNNTYTVIMLVTDDG 90
Query: 154 NNDRRNTGTAAILVKVQDV 172
+ TGT +++ V DV
Sbjct: 91 VSVG--TGTGTLILHVLDV 107
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 52.7 bits (125), Expect = 2e-09
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSI--SSGSQGIFDIDPN 231
D P F + V E+ +G V ++ D D G F+I +
Sbjct: 3 DNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61
Query: 232 TGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDV 283
+ + + Y+L+I V P PT+ VT+ + DV
Sbjct: 62 PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 31.9 bits (71), Expect = 0.032
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 308 NDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEI 367
ND P F Y A + EN + G V ++ D GT + E
Sbjct: 2 NDNAPIFDPKTYTALVPENEI--------GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEG 53
Query: 368 TPQKI 372
I
Sbjct: 54 GFFNI 58
Score = 30.0 bits (66), Expect = 0.17
Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 26/134 (19%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
AP F + + E G + RL D D + V N+
Sbjct: 5 APIF---DPKTYTALVPENE---IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 58
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR-R 158
+ +G++ LD+E + Y L+I +
Sbjct: 59 T-------------------TDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPL 99
Query: 159 NTGTAAILVKVQDV 172
T TA + V V+DV
Sbjct: 100 PTSTATVTVTVEDV 113
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 52.4 bits (125), Expect = 2e-09
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 13/111 (11%)
Query: 177 PEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPN 231
P V E+ G + + ++ K+ YSI+ G+F I+
Sbjct: 1 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59
Query: 232 TGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
TG + + LDRE Y L + A E+ I +TD
Sbjct: 60 TGWLKVTEPLDRE----RIATYTLFSHAVSSN---GNAVEDPMEILITVTD 103
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 51.3 bits (121), Expect = 6e-09
Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 10/116 (8%)
Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQ-------GIF 226
D PEF+ V E GT V+ V A+D D + SQ +F
Sbjct: 2 DNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMF 61
Query: 227 DIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
I+ TG+I T+ Y L I+ T+ + I +TD
Sbjct: 62 TINNETGDIITVAAGLDREKVQQ---YTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 32.4 bits (72), Expect = 0.025
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 308 NDETPTFRSPRYVAEIHENSVINTPVT 334
ND P F + + E S T V
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVM 27
Score = 30.8 bits (68), Expect = 0.086
Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 23/133 (17%)
Query: 40 APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
P F + E + GT++ + D D G+ +
Sbjct: 4 RPEF---LHQVWNGSVPE--GSKPGTYVMTVTAIDADDPNALNGMLRYRI---------- 48
Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
+ ++F+I+ +I + LD E Y L I A D N
Sbjct: 49 ------VSQAPSTPSPNMFTINN-ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYG 101
Query: 160 -TGTAAILVKVQD 171
+ TA ++ V D
Sbjct: 102 LSNTATAVITVTD 114
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 49.8 bits (118), Expect = 2e-08
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-----QGIFDIDPNTGNIFTLKELD 242
VSE+ G ++ + ++ NK+ YSI+ QG+F I+ TG + + LD
Sbjct: 9 VSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLD 67
Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
RE Y+L E+ E+TI + D
Sbjct: 68 REEYDK----YVLSSHAVSEN---GSPVEEPMEITINVID 100
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 48.7 bits (115), Expect = 4e-08
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 13/106 (12%)
Query: 182 VSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIF 236
V + E+ G ++ + R N + YS++ GIF I+P +G +
Sbjct: 5 VIPPINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLS 63
Query: 237 TLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
K LDRE + L + + ++ I + D
Sbjct: 64 VTKPLDRE----LIARFHLRAHAVDIN---GNQVENPIDIVINVID 102
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 45.5 bits (106), Expect = 7e-07
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 14/117 (11%)
Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKA---VDGDRGINNKILYSISSGSQG-----I 225
D PEF V+E GTSV++V A D N I Y+I S +
Sbjct: 2 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 61
Query: 226 FDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
F ++ +TG I L + Y L ++ + + + I + D
Sbjct: 62 FTVNRDTGVISVLTSGLDRESYPT---YTLVVQAADLQ---GEGLSTTAKAVITVKD 112
Score = 33.9 bits (76), Expect = 0.007
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 2/74 (2%)
Query: 308 NDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEI 367
ND P F + + E +V T V D N I
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMK--VSATDADDDVNTYNAAIAYTIVSQDPELPH 58
Query: 368 TPQKIINEASFLIR 381
+N + +I
Sbjct: 59 KNMFTVNRDTGVIS 72
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 42.3 bits (98), Expect = 8e-06
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGI---NNKILYSISSG-----SQGI 225
D P+F V E V GT V+ V A D D I N + YSI +
Sbjct: 3 DNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNL 62
Query: 226 FDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
F I+ TG I + LDRE Y L ++ T+ + + + I ITD
Sbjct: 63 FTINRETGVISLIGTGLDREKFPE----YTLTVQATDLE---GAGLSVEGKAIIQITD 113
Score = 33.9 bits (76), Expect = 0.007
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 2/76 (2%)
Query: 308 NDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEI 367
ND P F + + E T V + NG I I
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSL--NGVLSYSILKQDPEEPI 59
Query: 368 TPQKIINEASFLIRNM 383
IN + +I +
Sbjct: 60 PNLFTINRETGVISLI 75
Score = 27.7 bits (60), Expect = 1.1
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 136 DYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD 171
D E Y L + A D + ++++ D
Sbjct: 80 DREKFPEYTLTVQATDLEGAGL--SVEGKAIIQITD 113
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 37.7 bits (86), Expect = 6e-04
Identities = 14/125 (11%), Positives = 32/125 (25%), Gaps = 14/125 (11%)
Query: 171 DVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDP 230
++ F + +DV G +L VK + +R + S+
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYES-----SEPADFKVD 59
Query: 231 NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTV 290
G ++ ++ I ++ + V + E
Sbjct: 60 EDGTVYAVRSFPLT-----AEQAKFLIYAQDKETQ----EKWQVAVNLSREPTLTEEPMK 110
Query: 291 QPAPT 295
+P
Sbjct: 111 EPHEI 115
Score = 34.6 bits (78), Expect = 0.006
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 306 DVNDETPTFRSPRYVAEIHENSVINTPVT 334
++ F Y A + ++ P+
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLL 33
Score = 28.8 bits (63), Expect = 0.52
Identities = 15/160 (9%), Positives = 37/160 (23%), Gaps = 38/160 (23%)
Query: 41 PRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVM 100
F + L + D G + ++ ++ + D E+ V
Sbjct: 11 TGF---PEDVYSAVLPK--DVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGTVY 65
Query: 101 LKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNT 160
+ + + I A D+ ++
Sbjct: 66 ------------------------------AVRSFPLTAEQ-AKFLIYAQDKETQEKWQ- 93
Query: 161 GTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQ 200
A L + + ++P + + + LQ
Sbjct: 94 -VAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQ 132
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
enzyme {Neurospora crassa [TaxId: 5141]}
Length = 365
Score = 30.2 bits (67), Expect = 0.41
Identities = 15/141 (10%), Positives = 32/141 (22%), Gaps = 30/141 (21%)
Query: 159 NTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSI 218
T ++ + + +D+P ++ K +Y
Sbjct: 24 EKLTCKLIKRTEIPQDEPISWMTFDH--------------------------ERKNIYGA 57
Query: 219 SSGSQGIFDIDPNTGNIFTLKELDRES----ATSNNGAYILEIKVTEESKTVQPAPTAKT 274
+ F + T + N I + + V P K
Sbjct: 58 AMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117
Query: 275 EVTIIITDVTEESKTVQPAPT 295
+ V+E K +
Sbjct: 118 AGYGNVFSVSETGKLEKNVQN 138
>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 236
Score = 28.2 bits (63), Expect = 1.3
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 18/92 (19%)
Query: 44 IIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTF--------GVQGHGHDVIRIE 95
I++++T P F RL G P DV + GV GH
Sbjct: 135 ILNKRTN--------STWPTTWFAPRLTGKGPFTDVYSVMANWGANHGVLTIGHVGADFI 186
Query: 96 NLNVMLKVVYHLENVDGDEKDLFSISTVNGKG 127
L ML++ + NV +E ++ S G
Sbjct: 187 TLASMLRIPVCMHNV--EETKVYRPSAWAAHG 216
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 26.6 bits (57), Expect = 2.7
Identities = 2/20 (10%), Positives = 4/20 (20%)
Query: 294 PTAKTEVTIIITDVNDETPT 313
T V + +
Sbjct: 86 NPQLTVVNATVCSCEGKAIK 105
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 141
Score = 25.8 bits (57), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 31 VDSSVSGNRAPRFIIDEQTEIVIRL 55
VD SVS N+ R I + + I+ RL
Sbjct: 59 VDGSVSKNQGLRLIFADGSRIIFRL 83
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Candida albicans [TaxId:
5476]}
Length = 322
Score = 25.9 bits (56), Expect = 8.2
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 14/78 (17%)
Query: 47 EQTEIVIRLKEGPD--------------TPAGTFIYRLRGADPDGDVLTFGVQGHGHDVI 92
+ LK D LR PD + FG H D
Sbjct: 182 HEPWFQEALKHEVDLIIIVGHTPISHNWGEFYQVHQYLRQFFPDTIIQYFGGHSHIRDFT 241
Query: 93 RIENLNVMLKVVYHLENV 110
++L+ L+ + E V
Sbjct: 242 VFDSLSTGLQSGRYCETV 259
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.375
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,361,736
Number of extensions: 64623
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 30
Length of query: 383
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,213,086
Effective search space: 359073456
Effective search space used: 359073456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)