RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11781
(1228 letters)
>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein. Royal jelly is the
food of queen bee larvae, and is responsible for the
high reproductive ability of the queen. Major royal
jelly proteins make up around 90% of larval jelly
proteins. This family also the sequence-related yellow
protein of drosophila which controls pigmentation of the
adult cuticle and larval mouth parts.
Length = 285
Score = 266 bits (683), Expect = 4e-81
Identities = 120/315 (38%), Positives = 184/315 (58%), Gaps = 34/315 (10%)
Query: 468 ISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEG 527
+SV+R++VD+CDRLW++D+G+ N L +Q+CPPK++VFDL T+ L++++ LP
Sbjct: 1 VSVYRIAVDECDRLWVLDSGIVNTLQPPKQICPPKLLVFDLATDKLLKRFELPADVAKGN 60
Query: 528 SLFSNIVTEVVED-CDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILD 586
S N+V +V +D CD F Y+ D GLIVYD + S+R+ H YP+P + +
Sbjct: 61 SRLVNLVVDVGDDTCDDTFVYIADAKGRGLIVYDLADDKSWRVEHNTFYPDPDFGKFTIA 120
Query: 587 NLKFRWVDGIFGMAISPELSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLS 646
F+ DGIFG+A+SP D R +YFH L+
Sbjct: 121 GESFQLDDGIFGLALSP-----------------------------RTPDGRTLYFHPLA 151
Query: 647 SNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVTKHS 706
S R Y V T LRN + + N++ ++ F LG RNTQ++A A++ NGV+F+ LV +++
Sbjct: 152 STRLYSVPTEVLRNETNWGNNAQYED-FKDLGD--RNTQSTALAVDPNGVLFFGLVGQNA 208
Query: 707 VGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQYLYGFLDFNVY 766
VGCWNT + Y +V + D L FP+DLKID + +W+LSN++ ++LY LD++
Sbjct: 209 VGCWNT-STPYSRANLGVVARNSDTLQFPSDLKIDKEEYLWVLSNRMQKFLYNDLDYDEV 267
Query: 767 NYRILVANSNDIKNN 781
N+RIL AN + + N
Sbjct: 268 NFRILGANVDLLIRN 282
Score = 265 bits (680), Expect = 1e-80
Identities = 119/312 (38%), Positives = 183/312 (58%), Gaps = 34/312 (10%)
Query: 28 ISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEG 87
+SV+R++VD+CDRLW++D+G+ N L +Q+CPPK++VFDL T+ L++++ LP
Sbjct: 1 VSVYRIAVDECDRLWVLDSGIVNTLQPPKQICPPKLLVFDLATDKLLKRFELPADVAKGN 60
Query: 88 SLFSNIVTEVVED-CDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILD 146
S N+V +V +D CD F Y+ D GLIVYD + S+R+ H YP+P + +
Sbjct: 61 SRLVNLVVDVGDDTCDDTFVYIADAKGRGLIVYDLADDKSWRVEHNTFYPDPDFGKFTIA 120
Query: 147 NLKFRWVDGIFGMAISPELSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLS 206
F+ DGIFG+A+SP D R +YFH L+
Sbjct: 121 GESFQLDDGIFGLALSP-----------------------------RTPDGRTLYFHPLA 151
Query: 207 SNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVTKHS 266
S R Y V T LRN + + N++ ++ F LG RNTQ++A A++ NGV+F+ LV +++
Sbjct: 152 STRLYSVPTEVLRNETNWGNNAQYED-FKDLGD--RNTQSTALAVDPNGVLFFGLVGQNA 208
Query: 267 VGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQYLYGFLDFNVY 326
VGCWNT + Y +V + D L FP+DLKID + +W+LSN++ ++LY LD++
Sbjct: 209 VGCWNT-STPYSRANLGVVARNSDTLQFPSDLKIDKEEYLWVLSNRMQKFLYNDLDYDEV 267
Query: 327 NYRILVANSNDI 338
N+RIL AN + +
Sbjct: 268 NFRILGANVDLL 279
Score = 265 bits (680), Expect = 1e-80
Identities = 119/312 (38%), Positives = 183/312 (58%), Gaps = 34/312 (10%)
Query: 918 ISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEG 977
+SV+R++VD+CDRLW++D+G+ N L +Q+CPPK++VFDL T+ L++++ LP
Sbjct: 1 VSVYRIAVDECDRLWVLDSGIVNTLQPPKQICPPKLLVFDLATDKLLKRFELPADVAKGN 60
Query: 978 SLFSNIVTEVVED-CDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILD 1036
S N+V +V +D CD F Y+ D GLIVYD + S+R+ H YP+P + +
Sbjct: 61 SRLVNLVVDVGDDTCDDTFVYIADAKGRGLIVYDLADDKSWRVEHNTFYPDPDFGKFTIA 120
Query: 1037 NLKFRWVDGIFGMAISPELSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLS 1096
F+ DGIFG+A+SP D R +YFH L+
Sbjct: 121 GESFQLDDGIFGLALSP-----------------------------RTPDGRTLYFHPLA 151
Query: 1097 SNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVTKHS 1156
S R Y V T LRN + + N++ ++ F LG RNTQ++A A++ NGV+F+ LV +++
Sbjct: 152 STRLYSVPTEVLRNETNWGNNAQYED-FKDLGD--RNTQSTALAVDPNGVLFFGLVGQNA 208
Query: 1157 VGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQYLYGFLDFNVY 1216
VGCWNT + Y +V + D L FP+DLKID + +W+LSN++ ++LY LD++
Sbjct: 209 VGCWNT-STPYSRANLGVVARNSDTLQFPSDLKIDKEEYLWVLSNRMQKFLYNDLDYDEV 267
Query: 1217 NYRILVANSNDI 1228
N+RIL AN + +
Sbjct: 268 NFRILGANVDLL 279
>gnl|CDD|147322 pfam05078, DUF679, Protein of unknown function (DUF679). This
family contains several uncharacterized plant proteins.
Length = 169
Score = 30.7 bits (70), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 408 NNLPLGIGIWRSTIFLSFPKWKAGIPF 434
NLPLG+G+ S +F+ FP + GI +
Sbjct: 143 TNLPLGVGVVSSFVFMVFPTTRHGIGY 169
Score = 30.7 bits (70), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 858 NNLPLGIGIWRSTIFLSFPKWKAGIPF 884
NLPLG+G+ S +F+ FP + GI +
Sbjct: 143 TNLPLGVGVVSSFVFMVFPTTRHGIGY 169
>gnl|CDD|217990 pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit.
The Exodeoxyribonuclease V enzyme is a multi-subunit
enzyme comprised of the proteins RecB, RecC (this
family) and RecD. This enzyme plays an important role in
homologous genetic recombination, repair of double
strand DNA breaks resistance to UV irradiation and
chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes
ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of
ssDNA or dsDNA and unwinding of dsDNA. This family
consists of two AAA domains.
Length = 756
Score = 31.4 bits (72), Expect = 4.2
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 190 DKTIRDDQRYMYFHSLSSNR-HYYVSTT--DLRNSSRYVNSSDIDEYFHYLGSRFRNTQA 246
D++ RDD RY++ +L S R H Y+S +R++S S + E YL F
Sbjct: 631 DRSRRDDDRYLFLEALLSAREHLYISYVGRSIRDNSERPPSVLVSELLDYLAQNFYLGDE 690
Query: 247 SASAI 251
+ A+
Sbjct: 691 ALKAL 695
Score = 31.4 bits (72), Expect = 4.2
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 630 DKTIRDDQRYMYFHSLSSNR-HYYVSTT--DLRNSSRYVNSSDIDEYFHYLGSRFRNTQA 686
D++ RDD RY++ +L S R H Y+S +R++S S + E YL F
Sbjct: 631 DRSRRDDDRYLFLEALLSAREHLYISYVGRSIRDNSERPPSVLVSELLDYLAQNFYLGDE 690
Query: 687 SASAI 691
+ A+
Sbjct: 691 ALKAL 695
Score = 31.4 bits (72), Expect = 4.2
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 1080 DKTIRDDQRYMYFHSLSSNR-HYYVSTT--DLRNSSRYVNSSDIDEYFHYLGSRFRNTQA 1136
D++ RDD RY++ +L S R H Y+S +R++S S + E YL F
Sbjct: 631 DRSRRDDDRYLFLEALLSAREHLYISYVGRSIRDNSERPPSVLVSELLDYLAQNFYLGDE 690
Query: 1137 SASAI 1141
+ A+
Sbjct: 691 ALKAL 695
>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and
metabolism].
Length = 307
Score = 30.8 bits (70), Expect = 4.2
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 247 SASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNI 306
S + I++ G + +H V + T + + LN PND +DP+ I
Sbjct: 70 SGALIDAGGRLI---ACEHGVRLLDPDTGGKITLLAEPEDGLP--LNRPNDGVVDPDGRI 124
Query: 307 WI 308
W
Sbjct: 125 WF 126
Score = 30.8 bits (70), Expect = 4.2
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 687 SASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNI 746
S + I++ G + +H V + T + + LN PND +DP+ I
Sbjct: 70 SGALIDAGGRLI---ACEHGVRLLDPDTGGKITLLAEPEDGLP--LNRPNDGVVDPDGRI 124
Query: 747 WI 748
W
Sbjct: 125 WF 126
Score = 30.8 bits (70), Expect = 4.2
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 1137 SASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNI 1196
S + I++ G + +H V + T + + LN PND +DP+ I
Sbjct: 70 SGALIDAGGRLI---ACEHGVRLLDPDTGGKITLLAEPEDGLP--LNRPNDGVVDPDGRI 124
Query: 1197 WI 1198
W
Sbjct: 125 WF 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.428
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 62,565,856
Number of extensions: 6120115
Number of successful extensions: 4837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4816
Number of HSP's successfully gapped: 31
Length of query: 1228
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1120
Effective length of database: 6,147,370
Effective search space: 6885054400
Effective search space used: 6885054400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (28.8 bits)