RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11781
(1228 letters)
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
serotonin, salivary gland, binding, ligand binging
protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
PDB: 3q6p_A* 3q6t_A*
Length = 381
Score = 288 bits (739), Expect = 6e-88
Identities = 88/421 (20%), Positives = 160/421 (38%), Gaps = 69/421 (16%)
Query: 379 VFRWKIMDFVFRDNKQKANLIRSNKFIPENNLPLGIGI--WRSTIFLSFPKWKAGIPFTL 436
++WK + + + + P+N + +FL+ P+ +P+TL
Sbjct: 5 GYKWKQLLYNN---------VTPGSYNPDNMISTAFAYDAEGEKLFLAVPRKLPRVPYTL 55
Query: 437 ASFNMND-----PSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNI 491
A + + SP+L + L S+++ +D C RLW++D G
Sbjct: 56 AEVDTKNSLGVKGKHSPLLNKFSGHK-----TGKELTSIYQPVIDDCRRLWVVDIGSVEY 110
Query: 492 LSSIQQLCP---PKIMVFDLKTNTL--IRKYILPTAQVFEGSLFSNIVTEVV---EDCDH 543
S + P P I+ +DLK + +Y PT V + + F +V DC
Sbjct: 111 RSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSE 170
Query: 544 VFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISP 603
F Y+ + R L +YD K S+ +THP E + + ++ + GIFG+ +
Sbjct: 171 TFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERP-TKFDYGGKEYEFKAGIFGITLGD 229
Query: 604 ELSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNSSR 663
S + R Y+ + S+ + Y V+T +L+
Sbjct: 230 RDS----------------------------EGNRPAYYLAGSAIKVYSVNTKELKQKGG 261
Query: 664 YVNSSDIDEYFHYLGSRFRNTQASASAINS-NGVMFYNLVTKHSVGCWNTKTKVYLPQTQ 722
+N LG+R + A A A + V+F+ V CWNT+ +
Sbjct: 262 KLN-------PELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNT 314
Query: 723 DIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQYLYG-FLDFNVYNYRIL-VANSNDIKN 780
D+V TS F D+ +D +W +SN ++ YR++ + ++ +
Sbjct: 315 DVVYTSSR-FVFGTDISVDSKGGLWFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQEAIA 373
Query: 781 N 781
Sbjct: 374 G 374
Score = 288 bits (738), Expect = 1e-87
Identities = 88/410 (21%), Positives = 156/410 (38%), Gaps = 68/410 (16%)
Query: 829 VFRWKIMDFVFRDNKQKANLIRSNKFIPENNLPLGIGI--WRSTIFLSFPKWKAGIPFTL 886
++WK + + + + P+N + +FL+ P+ +P+TL
Sbjct: 5 GYKWKQLLYNN---------VTPGSYNPDNMISTAFAYDAEGEKLFLAVPRKLPRVPYTL 55
Query: 887 ASFNMND-----PSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNI 941
A + + SP+L + L S+++ +D C RLW++D G
Sbjct: 56 AEVDTKNSLGVKGKHSPLLNKFSGHK-----TGKELTSIYQPVIDDCRRLWVVDIGSVEY 110
Query: 942 LSSIQQLCP---PKIMVFDLKTNTL--IRKYILPTAQVFEGSLFSNIVTEVV---EDCDH 993
S + P P I+ +DLK + +Y PT V + + F +V DC
Sbjct: 111 RSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSE 170
Query: 994 VFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISP 1053
F Y+ + R L +YD K S+ +THP E + + ++ + GIFG+ +
Sbjct: 171 TFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERP-TKFDYGGKEYEFKAGIFGITLGD 229
Query: 1054 ELSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNSSR 1113
S + R Y+ + S+ + Y V+T +L+
Sbjct: 230 RDS----------------------------EGNRPAYYLAGSAIKVYSVNTKELKQKGG 261
Query: 1114 YVNSSDIDEYFHYLGSRFRNTQASASAINS-NGVMFYNLVTKHSVGCWNTKTKVYLPQTQ 1172
+N LG+R + A A A + V+F+ V CWNT+ +
Sbjct: 262 KLN-------PELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNT 314
Query: 1173 DIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQYLYG-FLDFNVYNYRIL 1221
D+V TS F D+ +D +W +SN ++ YR++
Sbjct: 315 DVVYTSSR-FVFGTDISVDSKGGLWFMSNGFPPIRKSEKFKYDFPRYRLM 363
Score = 242 bits (618), Expect = 3e-71
Identities = 77/339 (22%), Positives = 130/339 (38%), Gaps = 52/339 (15%)
Query: 3 DPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCP-- 60
SP+L + L S+++ +D C RLW++D G S + P
Sbjct: 67 KGKHSPLLNKFSGHK-----TGKELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSH 121
Query: 61 -PKIMVFDLKTNTL--IRKYILPTAQVFEGSLFSNIVTEVV---EDCDHVFAYVNDVFRY 114
P I+ +DLK + +Y PT V + + F +V DC F Y+ + R
Sbjct: 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRG 181
Query: 115 GLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGKYKRHPY 174
L +YD K S+ +THP E + + ++ + GIFG+ + S
Sbjct: 182 ALFIYDHKKQDSWNVTHPTFKAERP-TKFDYGGKEYEFKAGIFGITLGDRDS-------- 232
Query: 175 EYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNSSRYVNSSDIDEYF 234
+ R Y+ + S+ + Y V+T +L+ +N
Sbjct: 233 --------------------EGNRPAYYLAGSAIKVYSVNTKELKQKGGKLN-------P 265
Query: 235 HYLGSRFRNTQASASAINS-NGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILN 293
LG+R + A A A + V+F+ V CWNT+ + D+V TS
Sbjct: 266 ELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSR-FV 324
Query: 294 FPNDLKIDPNDNIWILSNKLHQYLYG-FLDFNVYNYRIL 331
F D+ +D +W +SN ++ YR++
Sbjct: 325 FGTDISVDSKGGLWFMSNGFPPIRKSEKFKYDFPRYRLM 363
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 179 bits (454), Expect = 1e-49
Identities = 53/370 (14%), Positives = 119/370 (32%), Gaps = 60/370 (16%)
Query: 408 NNLPLGIGIWRS-TIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNS 466
+ P I + +FLS ++ +A L+P+P S + +
Sbjct: 16 SLAPGNITLTPDGRLFLSLHQFY-QPEMQVAELT------QDGLIPFPPQSG---NAIIT 65
Query: 467 LISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFE 526
+V + D +W++D G + PK++ +D N L R LP
Sbjct: 66 FDTVLGIKSDGNGIVWMLDNGNQSK-------SVPKLVAWDTLNNQLSRVIYLPPPITLS 118
Query: 527 GSLFSNIVTEVVEDCDHVFAYVND---VFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTY 583
S +++ D H F Y++D + LI D + R+ Y P
Sbjct: 119 NSFVNDLAV----DLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174
Query: 584 ILDNLKFRWVDGIFGMAISPELSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFH 643
++D + + V + + + ++Y
Sbjct: 175 VIDGVPVQIGQP----------------------DGTVIRPHLGVNGIVLDAENEWLYLS 212
Query: 644 SLSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVT 703
+ S Y + + DL N + +++ + +I+ + ++ +
Sbjct: 213 PMHSTSMYRIKSADLSNLQ--LTDAELGSKIERYSEKP---ICDGISIDKDHNIYVGDLA 267
Query: 704 KHSVGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQY--LYGFL 761
++G + + + +V + L++ + + ++ N+LH L
Sbjct: 268 HSAIGVITSADR----AYKLLVTDEK--LSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGE 321
Query: 762 DFNVYNYRIL 771
+ + Y I
Sbjct: 322 NISAPPYYIF 331
Score = 179 bits (454), Expect = 1e-49
Identities = 53/370 (14%), Positives = 119/370 (32%), Gaps = 60/370 (16%)
Query: 858 NNLPLGIGIWRS-TIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNS 916
+ P I + +FLS ++ +A L+P+P S + +
Sbjct: 16 SLAPGNITLTPDGRLFLSLHQFY-QPEMQVAELT------QDGLIPFPPQSG---NAIIT 65
Query: 917 LISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFE 976
+V + D +W++D G + PK++ +D N L R LP
Sbjct: 66 FDTVLGIKSDGNGIVWMLDNGNQSK-------SVPKLVAWDTLNNQLSRVIYLPPPITLS 118
Query: 977 GSLFSNIVTEVVEDCDHVFAYVND---VFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTY 1033
S +++ D H F Y++D + LI D + R+ Y P
Sbjct: 119 NSFVNDLAV----DLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174
Query: 1034 ILDNLKFRWVDGIFGMAISPELSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFH 1093
++D + + V + + + ++Y
Sbjct: 175 VIDGVPVQIGQP----------------------DGTVIRPHLGVNGIVLDAENEWLYLS 212
Query: 1094 SLSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVT 1153
+ S Y + + DL N + +++ + +I+ + ++ +
Sbjct: 213 PMHSTSMYRIKSADLSNLQ--LTDAELGSKIERYSEKP---ICDGISIDKDHNIYVGDLA 267
Query: 1154 KHSVGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQY--LYGFL 1211
++G + + + +V + L++ + + ++ N+LH L
Sbjct: 268 HSAIGVITSADR----AYKLLVTDEK--LSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGE 321
Query: 1212 DFNVYNYRIL 1221
+ + Y I
Sbjct: 322 NISAPPYYIF 331
Score = 164 bits (416), Expect = 1e-44
Identities = 47/330 (14%), Positives = 107/330 (32%), Gaps = 52/330 (15%)
Query: 7 SPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVF 66
L+P+P S + + +V + D +W++D G + PK++ +
Sbjct: 49 QDGLIPFPPQSG---NAIITFDTVLGIKSDGNGIVWMLDNGNQSK-------SVPKLVAW 98
Query: 67 DLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVND---VFRYGLIVYDFFK 123
D N L R LP S +++ D H F Y++D + LI D
Sbjct: 99 DTLNNQLSRVIYLPPPITLSNSFVNDLAV----DLIHNFVYISDPAPDDKAALIRVDLQT 154
Query: 124 NTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGKYKRHPYEYYHYNVHH 183
+ R+ Y P ++D + + V
Sbjct: 155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQP----------------------DGTVIR 192
Query: 184 YNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFRN 243
+ + + ++Y + S Y + + DL N + +++ +
Sbjct: 193 PHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ--LTDAELGSKIERYSEKP-- 248
Query: 244 TQASASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPN 303
+I+ + ++ + ++G + + + +V + L++ + +
Sbjct: 249 -ICDGISIDKDHNIYVGDLAHSAIGVITSADR----AYKLLVTDEK--LSWTDSFNFGSD 301
Query: 304 DNIWILSNKLHQY--LYGFLDFNVYNYRIL 331
++ N+LH L + + Y I
Sbjct: 302 GYLYFDCNQLHHSAPLNAGENISAPPYYIF 331
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.0 bits (178), Expect = 5e-13
Identities = 91/730 (12%), Positives = 206/730 (28%), Gaps = 219/730 (30%)
Query: 67 DLKTNTLIRKY--ILPTAQVFEGSLFSNIVTEVVED----------CDHVFAYVNDVFRY 114
D +T +Y IL VFE + N + V+D DH+ + V
Sbjct: 8 DFETGEHQYQYKDILS---VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 115 GLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLK--FRWV-DGIFGMAISPELSGKYKR 171
+ + + E ++ + L+ ++++ I P +
Sbjct: 65 LRL-FWTLLS----------KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM----MT 109
Query: 172 HPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRN--SSRYV---- 225
Y D+ D+Q + ++ +S + Y L ++ V
Sbjct: 110 RMYIEQR-----------DRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 226 --------------NSSDIDEYF----HYLGSRFRNTQASASAINSNGVMFYNLVTKHSV 267
S + +L + N+ + + + Y + +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--LLYQIDPNWTS 215
Query: 268 GCWNTKTKVYLPQTQDIVQTS-RDIL---NFPNDLKIDPNDNIWILSNKLHQYLYGFLDF 323
++ + +Q R +L + N L + N+ N + F +
Sbjct: 216 RSDHSSN---IKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQ---NA--KAWNAF-NL 264
Query: 324 NVYNYRILVANSNDISNAGPARPSTDQTKSFHPSVPSIYPSVPSNAYPSSSHFQVVFRWK 383
+ +IL+ + TD + + S+ H +
Sbjct: 265 SC---KILLT-TRFKQV-------TDFLSAATTTHISL------------DHHSMTL--- 298
Query: 384 IMDFVFRDNKQKANLIRSNKFIPENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASFNMND 443
+ +L+ +LP + P L+
Sbjct: 299 -------TPDEVKSLLLKYLDCRPQDLP--------------REVLTTNPRRLSII---- 333
Query: 444 PSESPILLPYPN-WSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPK 502
+ES + W + NC+ L ++ S++ + + + +
Sbjct: 334 -AES--IRDGLATWDNWKHVNCDKLTTIIESSLNVLE-------------PAEYRKMFDR 377
Query: 503 IMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFF 562
+ VF + I + ++ +++ V VN + +Y L+
Sbjct: 378 LSVFP--PSAHI------PTILLS-LIWFDVIKSDVMV------VVNKLHKYSLVEKQ-P 421
Query: 563 KNTSYRLTHPYM-YPEPTQSTY-----ILDNLKFRWVDGIFGMAISPELSGKYKRHPYEY 616
K ++ + Y+ ++ Y I+D + + P +Y +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQY------F 473
Query: 617 YHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSN--------RHYYVSTTDLRNSSRYVNS- 667
Y + HH K I +R F + + RH +T S +N+
Sbjct: 474 YSHIGHHL------KNIEHPERMTLFRMVFLDFRFLEQKIRH---DSTAWNASGSILNTL 524
Query: 668 SDIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQT 727
+ Y Y+ N +N+ + + K +K D+++
Sbjct: 525 QQLKFYKPYI---CDNDPKYERLVNA----ILDFLPKIEENLICSKYT-------DLLRI 570
Query: 728 SRDILNFPND 737
+ L ++
Sbjct: 571 A---LMAEDE 577
Score = 67.2 bits (163), Expect = 3e-11
Identities = 92/740 (12%), Positives = 206/740 (27%), Gaps = 229/740 (30%)
Query: 507 DLKTNTLIRKY--ILPTAQVFEGSLFSNIVTEVVED----------CDHVFAYVNDVFRY 554
D +T +Y IL VFE + N + V+D DH+ + V
Sbjct: 8 DFETGEHQYQYKDILS---VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 555 GLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLK--FRWV-DGIFGMAISPELSGKYKR 611
+ + + E ++ + L+ ++++ I P +
Sbjct: 65 LRL-FWTLLS----------KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM----MT 109
Query: 612 HPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRN--SSRYV---- 665
Y D+ D+Q + ++ +S + Y L ++ V
Sbjct: 110 RMYIEQR-----------DRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 666 --------------NSSDIDEYF----HYLGSRFRNTQASASAINSNGVMFYNLVTKHSV 707
S + +L + N+ + + + Y + +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--LLYQIDPNWTS 215
Query: 708 GCWNTKTKVYLPQTQDIVQTS-RDIL---NFPNDLKIDPNDNIWILSNKLHQYLYGFLDF 763
++ + +Q R +L + N L + N+ N + F +
Sbjct: 216 RSDHSSN---IKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQ---NA--KAWNAF-NL 264
Query: 764 NVYNYRILVANSNDIKNNNQPPNTKSNAGPARPSTDQTKSFHPSVPSIYPSVPSNAYPSS 823
+ +IL+ T TD + + S+
Sbjct: 265 SC---KILL--------------TTRFKQ----VTDFLSAATTTHISL------------ 291
Query: 824 SHFQVVFRWKIMDFVFRDNKQKANLIRSNKFIPENNLPLGIGIWRSTIFLSFPKWKAGIP 883
H + + +L+ +LP + P
Sbjct: 292 DHHSMTL----------TPDEVKSLLLKYLDCRPQDLP--------------REVLTTNP 327
Query: 884 FTLASFNMNDPSESPILLPYPN-WSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNIL 942
L+ +ES + W + NC+ L ++ S++ +
Sbjct: 328 RRLSII-----AES--IRDGLATWDNWKHVNCDKLTTIIESSLNVLE------------- 367
Query: 943 SSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVF 1002
+ + ++ VF + I + ++ +++ V VN +
Sbjct: 368 PAEYRKMFDRLSVFP--PSAHI------PTILLS-LIWFDVIKSDVMV------VVNKLH 412
Query: 1003 RYGLIVYDFFKNTSYRLTHPYM-YPEPTQSTY-----ILDNLKFRWVDGIFGMAISPELS 1056
+Y L+ K ++ + Y+ ++ Y I+D + + P
Sbjct: 413 KYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYL 469
Query: 1057 GKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSN--------RHYYVSTTDL 1108
+Y +Y + HH K I +R F + + RH +T
Sbjct: 470 DQY------FYSHIGHHL------KNIEHPERMTLFRMVFLDFRFLEQKIRH---DSTAW 514
Query: 1109 RNSSRYVNS-SDIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVTKHSVGCWNTKTKVY 1167
S +N+ + Y Y+ N +N+ + + K +K
Sbjct: 515 NASGSILNTLQQLKFYKPYI---CDNDPKYERLVNA----ILDFLPKIEENLICSKYT-- 565
Query: 1168 LPQTQDIVQTSRDILNFPND 1187
D+++ + L ++
Sbjct: 566 -----DLLRIA---LMAEDE 577
Score = 57.6 bits (138), Expect = 3e-08
Identities = 44/322 (13%), Positives = 97/322 (30%), Gaps = 91/322 (28%)
Query: 4 PSE----SPILL--------PYPN-WSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTN 50
P E +P L W + NC+ L ++ S++ +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE----------- 367
Query: 51 ILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVND 110
+ + ++ VF + I + ++ +++ V VN
Sbjct: 368 --PAEYRKMFDRLSVFP--PSAHI------PTILLS-LIWFDVIKSDVMV------VVNK 410
Query: 111 VFRYGLIVYDFFKNTSYRLTHPYM-YPEPTQSTY-----ILDNLKFRWVDGIFGMAISPE 164
+ +Y L+ K ++ + Y+ ++ Y I+D + + P
Sbjct: 411 LHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPP 467
Query: 165 LSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSN--------RHYYVSTT 216
+Y +Y + HH K I +R F + + RH +T
Sbjct: 468 YLDQY------FYSHIGHHL------KNIEHPERMTLFRMVFLDFRFLEQKIRH---DST 512
Query: 217 DLRNSSRYVNS-SDIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVTKHSVGCWNTKTK 275
S +N+ + Y Y+ N +N+ + + K +K
Sbjct: 513 AWNASGSILNTLQQLKFYKPYI---CDNDPKYERLVNA----ILDFLPKIEENLICSKYT 565
Query: 276 VYLPQTQDIVQTSRDILNFPND 297
D+++ + L ++
Sbjct: 566 -------DLLRIA---LMAEDE 577
Score = 47.9 bits (113), Expect = 2e-05
Identities = 97/702 (13%), Positives = 195/702 (27%), Gaps = 223/702 (31%)
Query: 282 QDIVQTSRDILNFP--NDLKIDPNDN------IWILSNKLHQYLYGFL-DFNVYNYRILV 332
+D+ + IL+ + + + + W L +K + + F+ + NY+ L+
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 333 ANSNDISNAGPARPSTDQTKSFHPSVPS-IYPSVPSNAYPSSSHFQVVFRWKIMDFVFRD 391
S +T+ PS+ + +Y Y + F V R
Sbjct: 96 --------------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-------AKYNVSR- 133
Query: 392 NKQKANLIRSN--KFIPENNLPL----GIGIWRSTIFLSFPKWKAGIPFTLASFNMNDPS 445
Q +R + P N+ + G G K +A
Sbjct: 134 -LQPYLKLRQALLELRPAKNVLIDGVLGSG-----------KT------WVALDVCLS-- 173
Query: 446 ESPILLPYPN---WSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPK 502
+ W NCNS +V M ++ N S K
Sbjct: 174 -YKVQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQI------DPNWTSRSDHSSNIK 224
Query: 503 IMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYG---LI-- 557
+ + ++ +R+ + ++ +E L +V V++ + F L+
Sbjct: 225 LRIHSIQAE--LRRLLK--SKPYENCL---LVLLNVQNAKAW-----NAFNLSCKILLTT 272
Query: 558 ----VYDFFKNTSYRLTHPYMYPEPTQSTYILDNLK--F-RWVDGIFGM------AISPE 604
V DF + TH + + T D +K +++D +P
Sbjct: 273 RFKQVTDFLSAATT--THISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 605 LSG----KYKRHP--YEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDL 658
+ ++ + H N + I S L
Sbjct: 329 RLSIIAESIRDGLATWDNWK----HVNCDKLTTIIE------------------SSLNVL 366
Query: 659 RNSSRYVNSSDIDEYFHYLGSRFR-NTQASASAI---------NSNGVMFYNLVTKHSVG 708
++ + F L S F + + + V+ L V
Sbjct: 367 -------EPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 709 CWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQYLYGFLDFNVYNY 768
++ + +P +LK+ + LH+ + V +Y
Sbjct: 419 KQPKESTISIPSIYL-------------ELKVKLENEY-----ALHRSI-------VDHY 453
Query: 769 RILVANSNDIKNNNQPPNTKSNAGPARPSTDQTKSFHPSVPSIYPSVPSNAYPSSSHFQV 828
I +D P DQ H I + H +
Sbjct: 454 NIPKTFDSD--------------DLIPPYLDQYFYSH-----I-------GH----HLKN 483
Query: 829 V--------FRWKIMDFVFRDNKQKANLIRSNKFIPENNLPLGIGIWRSTIFLSFPKWKA 880
+ FR +DF F + K + + N N + ++ I + PK++
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 881 GIPFTLASFNMN---DPSESP------ILLPYPNWSYFDDSN 913
+ + F + S I L + + F++++
Sbjct: 544 LV-NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 42.1 bits (98), Expect = 0.001
Identities = 58/442 (13%), Positives = 117/442 (26%), Gaps = 127/442 (28%)
Query: 88 SLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDN 147
L I DH + + RL Y +L N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRI--------HSIQAELRRLLKSKPYEN---CLLVLLN 252
Query: 148 LKFRWVDGIFGMAISPELSGKYKRHPYEYYHYNVHHYNG------TNVDKTIRDDQRYMY 201
++ + +N T K + D
Sbjct: 253 VQNAKA---------------------------WNAFNLSCKILLTTRFKQVTD------ 279
Query: 202 FHSLSSNRHYYVSTTDLRNSSRYVNSSDIDEYF-HYLGSRFRNTQASASAINSNGV-MFY 259
LS+ ++S + + ++ YL R ++ N + +
Sbjct: 280 --FLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 260 NLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILN-------------FPNDLKIDPNDNI 306
+ + + W+ V + I+++S ++L FP I P +
Sbjct: 335 ESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILL 392
Query: 307 ---W---------ILSNKLHQYLYGFLDFNVYNYRILVANSNDISNAGPARPSTDQTKSF 354
W ++ NKLH+Y I I + + +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-----PSIYLE--LKVKLENEYAL 445
Query: 355 HPSVPSIYPSVPSNAYPSSS----------------HFQVV--------FRWKIMDFVFR 390
H S+ Y + S H + + FR +DF F
Sbjct: 446 HRSIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 391 DNKQKANLIRSNKFIPENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASFNMN---DPSES 447
+ K + + N N + ++ I + PK++ + + F + S
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV-NAILDFLPKIEENLICS 562
Query: 448 P------ILLPYPNWSYFDDSN 463
I L + + F++++
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-05
Identities = 67/447 (14%), Positives = 131/447 (29%), Gaps = 153/447 (34%)
Query: 2 NDPSESPILLPYPNWSYF--------DDSNCNSLISVFRMSVDKCDRLWIMDTGVTNILS 53
++P+ +P L F + S V + + + + ++ + + +
Sbjct: 52 DEPT-TPAEL----VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 54 SIQQLCPPKIMVFDLKTNTLIRKYIL-------PTAQVFEGSLFSNIVTEVVEDCDHVFA 106
+ Q + +KT LI+ YI P + +LF + + A
Sbjct: 107 KLLQENDTTL----VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA----QLVA 158
Query: 107 ------YVNDVFR--------YGLIVYDFFKNTSYRLTHPYMYPEPTQSTY--ILDNLKF 150
+D F Y ++V D K ++ L+ + + L+ L+
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE- 217
Query: 151 RWVDGIFGMAISPELSGKYKRHPYEYY-----------------HY----NVHHYNGTNV 189
W++ P P + Y HY + + +
Sbjct: 218 -WLEN-------PS------NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 190 DKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNS----SRYVNSSDIDEYFHYLGSR----F 241
R Y + + V+ + + S +V+ ++G R +
Sbjct: 264 ----RS-----YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 242 RNTQASASAI-----NSNGVMFYNL----VTKHSVGCWNTKTKVYLPQTQDIVQTSRDIL 292
NT S + N+ GV L +T+ V + KT +LP + + + S ++
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EIS--LV 371
Query: 293 NFPNDLKI--DPNDNIWILSNKLHQYLYGFLDFNVYNYRILVANSNDISNAGPARPSTDQ 350
N +L + P LYG R A DQ
Sbjct: 372 NGAKNLVVSGPPQS------------LYGL----NLTLR-----------KAKAPSGLDQ 404
Query: 351 TK------------SFHP-SVP--SIY 362
++ F P + P S
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHL 431
Score = 48.9 bits (116), Expect = 1e-05
Identities = 59/392 (15%), Positives = 115/392 (29%), Gaps = 118/392 (30%)
Query: 424 SFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYF--------DDSNCNSLISVFRMSV 475
F K +P F +D +P L F + S V + +
Sbjct: 36 QFNKI---LPEPTEGFAADDEPTTPAEL----VGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 476 DKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYIL-------PTAQVFEGS 528
+ + ++ + + + + Q + +KT LI+ YI P + +
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTL----VKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 529 LFSNIVTEVVEDCDHVFA------YVNDVFR--------YGLIVYDFFKNTSYRLTHPYM 574
LF + + A +D F Y ++V D K ++ L+
Sbjct: 145 LFRAVGEGNA----QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 575 YPEPTQSTY--ILDNLKFRWVDGIFGMAISPELSGKYKRHPYEYY--------------- 617
+ + L+ L+ W++ P P + Y
Sbjct: 201 TTLDAEKVFTQGLNILE--WLEN-------PS------NTPDKDYLLSIPISCPLIGVIQ 245
Query: 618 --HY----NVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNS----SRYVNS 667
HY + + + R Y + + V+ + + S +V+
Sbjct: 246 LAHYVVTAKLLGFTPGEL----RS-----YLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 668 SDIDEYFHYLGSR----FRNTQASASAI-----NSNGVMFYNL----VTKHSVGCWNTKT 714
++G R + NT S + N+ GV L +T+ V + KT
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 715 KVYLPQTQDI---VQTSRDILNF-----PNDL 738
+LP + + + N P L
Sbjct: 357 NSHLPAGKQVEISLVNGAK--NLVVSGPPQSL 386
Score = 48.9 bits (116), Expect = 1e-05
Identities = 59/392 (15%), Positives = 115/392 (29%), Gaps = 118/392 (30%)
Query: 874 SFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYF--------DDSNCNSLISVFRMSV 925
F K +P F +D +P L F + S V + +
Sbjct: 36 QFNKI---LPEPTEGFAADDEPTTPAEL----VGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 926 DKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYIL-------PTAQVFEGS 978
+ + ++ + + + + Q + +KT LI+ YI P + +
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTL----VKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 979 LFSNIVTEVVEDCDHVFA------YVNDVFR--------YGLIVYDFFKNTSYRLTHPYM 1024
LF + + A +D F Y ++V D K ++ L+
Sbjct: 145 LFRAVGEGNA----QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 1025 YPEPTQSTY--ILDNLKFRWVDGIFGMAISPELSGKYKRHPYEYY--------------- 1067
+ + L+ L+ W++ P P + Y
Sbjct: 201 TTLDAEKVFTQGLNILE--WLEN-------PS------NTPDKDYLLSIPISCPLIGVIQ 245
Query: 1068 --HY----NVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNS----SRYVNS 1117
HY + + + R Y + + V+ + + S +V+
Sbjct: 246 LAHYVVTAKLLGFTPGEL----RS-----YLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 1118 SDIDEYFHYLGSR----FRNTQASASAI-----NSNGVMFYNL----VTKHSVGCWNTKT 1164
++G R + NT S + N+ GV L +T+ V + KT
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 1165 KVYLPQTQDI---VQTSRDILNF-----PNDL 1188
+LP + + + N P L
Sbjct: 357 NSHLPAGKQVEISLVNGAK--NLVVSGPPQSL 386
Score = 41.6 bits (97), Expect = 0.002
Identities = 96/592 (16%), Positives = 159/592 (26%), Gaps = 234/592 (39%)
Query: 120 DFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISP-ELSGKY------KRH 172
+ F PEPT+ + D+ +P EL GK+
Sbjct: 35 EQFNKI---------LPEPTEG-FAADD-----------EPTTPAELVGKFLGYVSSLVE 73
Query: 173 PYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHS--LSSNR-HYYVSTTDLRNSSRYVNSSD 229
P + + V + F + L N H + N + V + +
Sbjct: 74 PSKVGQF-------DQVLNLCLTE-----FENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 230 -IDEYF---HYLGSRFRNTQASA--SAINSNGVMFYNLVTKHSV----GCWNTKT----- 274
I Y F SA A+ ++ G NT
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV------AIFGGQG--NTDDYFEEL 173
Query: 275 ----KVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQYLYGFLDFNVYNYRI 330
+ Y D+++ S + L ++L D + K+ + G N+ +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETL---SELIRTTLD-----AEKV--FTQG---LNILEW-- 218
Query: 331 LVANSNDISNAGPARPSTDQTKSFHPSVPSI-------YPSV-------PSNAYP----S 372
+ N P D S S P I Y P +
Sbjct: 219 -------LENPSN-TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 373 SSHFQVVF---------RWKIMDFVFRDNKQKANLIRSNKFIPENNLPLGIGIWRSTIFL 423
+ H Q + W+ F + +KA I + IG R
Sbjct: 271 TGHSQGLVTAVAIAETDSWE----SFFVSVRKA--IT---------VLFFIG-VRCY--E 312
Query: 424 SFPKWKAGIPFTLASFNMNDPSE------SPIL----LPYPNWSYFDDSNCNSLISVFRM 473
++P +L + D E SP+L L ++
Sbjct: 313 AYP------NTSLPPSILEDSLENNEGVPSPMLSISNLT--------QEQVQDYVNKTNS 358
Query: 474 SVDKCDRLWIMDTGVTN-----ILSSIQQLCPPKIMVFDLKT-NTLIRKY---------- 517
+ ++ I + N ++S PP+ L N +RK
Sbjct: 359 HLPAGKQVEI---SLVNGAKNLVVSG-----PPQ----SLYGLNLTLRKAKAPSGLDQSR 406
Query: 518 I-------------LPTAQVFEGSLFSNIVTEVVED--CDHVFAYVNDVFRYGLIVYDFF 562
I LP A F L + +D ++V D+ + VYD F
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI---QIPVYDTF 463
Query: 563 KNTSYR--------------LTHPYMYPEPTQ--STYILDNLKFRWVDGIFG 598
+ R + P + TQ +T+ILD FG
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD----------FG 505
Score = 39.6 bits (92), Expect = 0.008
Identities = 96/602 (15%), Positives = 159/602 (26%), Gaps = 244/602 (40%)
Query: 560 DFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISP-ELSGKY------KRH 612
+ F PEPT+ + D+ +P EL GK+
Sbjct: 35 EQFNKI---------LPEPTEG-FAADD-----------EPTTPAELVGKFLGYVSSLVE 73
Query: 613 PYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHS--LSSNR-HYYVSTTDLRNSSRYVNSSD 669
P + + V + F + L N H + N + V + +
Sbjct: 74 PSKVGQF-------DQVLNLCLTE-----FENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 670 -IDEYF---HYLGSRFRNTQASA--SAINSNGVMFYNLVTKHSV----GCWNTKT----- 714
I Y F SA A+ ++ G NT
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV------AIFGGQG--NTDDYFEEL 173
Query: 715 ----KVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQYLYGFLDFNVYNYRI 770
+ Y D+++ S + L ++L D + K+ + G
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETL---SELIRTTLD-----AEKV--FTQGL---------- 213
Query: 771 LVANSNDIKNNNQPPNTKSNAGPARPSTDQTKSFHPSVPSI-------YPSV-------P 816
+I + P+ P D S S P I Y P
Sbjct: 214 ------NILEWLENPSN-------TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 817 SNAYP----SSSHFQVVF---------RWKIMDFVFRDNKQKANLIRSNKFIPENNLPLG 863
++ H Q + W+ F + +KA I +
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWE----SFFVSVRKA--IT---------VLFF 305
Query: 864 IGIWRSTIFLSFPKWKAGIPFTLASFNMNDPSE------SPIL----LPYPNWSYFDDSN 913
IG R ++P +L + D E SP+L L
Sbjct: 306 IG-VRCY--EAYP------NTSLPPSILEDSLENNEGVPSPMLSISNLT--------QEQ 348
Query: 914 CNSLISVFRMSVDKCDRLWIMDTGVTN-----ILSSIQQLCPPKIMVFDLKT-NTLIRKY 967
++ + ++ I + N ++S PP+ L N +RK
Sbjct: 349 VQDYVNKTNSHLPAGKQVEI---SLVNGAKNLVVSG-----PPQ----SLYGLNLTLRKA 396
Query: 968 ----------I-------------LPTAQVFEGSLFSNIVTEVVED--CDHVFAYVNDVF 1002
I LP A F L + +D ++V D+
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI- 455
Query: 1003 RYGLIVYDFFKNTSYR--------------LTHPYMYPEPTQ--STYILDNLKFRWVDGI 1046
+ VYD F + R + P + TQ +T+ILD
Sbjct: 456 --QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD---------- 503
Query: 1047 FG 1048
FG
Sbjct: 504 FG 505
Score = 32.7 bits (74), Expect = 1.0
Identities = 36/235 (15%), Positives = 65/235 (27%), Gaps = 81/235 (34%)
Query: 1010 DFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISP-ELSGKY------KRH 1062
+ F PEPT+ + D+ +P EL GK+
Sbjct: 35 EQFNKI---------LPEPTEG-FAADD-----------EPTTPAELVGKFLGYVSSLVE 73
Query: 1063 PYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHS--LSSNR-HYYVSTTDLRNSSRYVNSSD 1119
P + + V + F + L N H + N + V + +
Sbjct: 74 PSKVGQF-------DQVLNLCLTE-----FENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 1120 -IDEYF---HYLGSRFRNTQASA--SAINSNGVMFYNLVTKHSV----GCWNTKT----- 1164
I Y F SA A+ ++ G NT
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV------AIFGGQG--NTDDYFEEL 173
Query: 1165 ----KVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQY---LYGFLD 1212
+ Y D+++ S + L ++L D + K+ + +L+
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETL---SELIRTTLD-----AEKVFTQGLNILEWLE 220
Score = 30.4 bits (68), Expect = 5.1
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 45/146 (30%)
Query: 158 GMAISPELSGKYK-------------RHPYEYYHYNVHH-----------YNGTNVDKTI 193
GM + +L YK H + Y +++ + G K I
Sbjct: 1630 GMGM--DL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 194 RDDQRYMYFHSLS--SNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFRNTQ------ 245
R++ M F ++ + + +S+ Y S+ L S + TQ
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL----L-SATQFTQPALTLM 1739
Query: 246 --ASASAINSNGVMFYNLVTK-HSVG 268
A+ + S G++ + HS+G
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLG 1765
Score = 30.4 bits (68), Expect = 5.1
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 45/146 (30%)
Query: 598 GMAISPELSGKYK-------------RHPYEYYHYNVHH-----------YNGTNVDKTI 633
GM + +L YK H + Y +++ + G K I
Sbjct: 1630 GMGM--DL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 634 RDDQRYMYFHSLS--SNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFRNTQ------ 685
R++ M F ++ + + +S+ Y S+ L S + TQ
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL----L-SATQFTQPALTLM 1739
Query: 686 --ASASAINSNGVMFYNLVTK-HSVG 708
A+ + S G++ + HS+G
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLG 1765
Score = 30.4 bits (68), Expect = 5.1
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 45/146 (30%)
Query: 1048 GMAISPELSGKYK-------------RHPYEYYHYNVHH-----------YNGTNVDKTI 1083
GM + +L YK H + Y +++ + G K I
Sbjct: 1630 GMGM--DL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 1084 RDDQRYMYFHSLS--SNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFRNTQ------ 1135
R++ M F ++ + + +S+ Y S+ L S + TQ
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL----L-SATQFTQPALTLM 1739
Query: 1136 --ASASAINSNGVMFYNLVTK-HSVG 1158
A+ + S G++ + HS+G
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLG 1765
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 33.2 bits (76), Expect = 0.45
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 292 LNFPNDLKIDPNDNIWI 308
+ ND D N+WI
Sbjct: 116 MQGCNDCAFDYEGNLWI 132
Score = 33.2 bits (76), Expect = 0.45
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 732 LNFPNDLKIDPNDNIWI 748
+ ND D N+WI
Sbjct: 116 MQGCNDCAFDYEGNLWI 132
Score = 33.2 bits (76), Expect = 0.45
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 1182 LNFPNDLKIDPNDNIWI 1198
+ ND D N+WI
Sbjct: 116 MQGCNDCAFDYEGNLWI 132
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 30.8 bits (70), Expect = 3.6
Identities = 31/264 (11%), Positives = 81/264 (30%), Gaps = 18/264 (6%)
Query: 528 SLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDN 587
S+ N + EV D ++ R GL Y++ + + P+ + +
Sbjct: 62 SITGNELNEVYTDPVQPVIWIAT-QRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHI 120
Query: 588 LKFRWVDGIFGMAISPELSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSS 647
+ ++ HYN ++T + +
Sbjct: 121 TSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATE--------AE 172
Query: 648 NRHYYVSTTDLRNSSRYVNSSDIDEYFHYLG--SRFRNTQASASAINSNGVMFYNLVTKH 705
+ Y+ + S +N + + H + ++NG ++ + T
Sbjct: 173 DGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW--IGTSK 230
Query: 706 SVGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQYLYGFLDFNV 765
+ +N T+ + + + ++ +K ++ +WI + L G + ++
Sbjct: 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIAT-----ELNGIMILDL 285
Query: 766 YNYRILVANSNDIKNNNQPPNTKS 789
+ L+ + + N S
Sbjct: 286 QQNQFLLPEQIRFEFIREGDNNYS 309
Score = 29.6 bits (67), Expect = 8.1
Identities = 26/223 (11%), Positives = 68/223 (30%), Gaps = 13/223 (5%)
Query: 88 SLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDN 147
S+ N + EV D ++ R GL Y++ + + P+ + +
Sbjct: 62 SITGNELNEVYTDPVQPVIWIAT-QRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHI 120
Query: 148 LKFRWVDGIFGMAISPELSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSS 207
+ ++ HYN ++T + +
Sbjct: 121 TSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATE--------AE 172
Query: 208 NRHYYVSTTDLRNSSRYVNSSDIDEYFHYLG--SRFRNTQASASAINSNGVMFYNLVTKH 265
+ Y+ + S +N + + H + ++NG ++ + T
Sbjct: 173 DGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW--IGTSK 230
Query: 266 SVGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWI 308
+ +N T+ + + + ++ +K ++ +WI
Sbjct: 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI 273
Score = 29.6 bits (67), Expect = 8.1
Identities = 26/223 (11%), Positives = 68/223 (30%), Gaps = 13/223 (5%)
Query: 978 SLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDN 1037
S+ N + EV D ++ R GL Y++ + + P+ + +
Sbjct: 62 SITGNELNEVYTDPVQPVIWIAT-QRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHI 120
Query: 1038 LKFRWVDGIFGMAISPELSGKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSS 1097
+ ++ HYN ++T + +
Sbjct: 121 TSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATE--------AE 172
Query: 1098 NRHYYVSTTDLRNSSRYVNSSDIDEYFHYLG--SRFRNTQASASAINSNGVMFYNLVTKH 1155
+ Y+ + S +N + + H + ++NG ++ + T
Sbjct: 173 DGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW--IGTSK 230
Query: 1156 SVGCWNTKTKVYLPQTQDIVQTSRDILNFPNDLKIDPNDNIWI 1198
+ +N T+ + + + ++ +K ++ +WI
Sbjct: 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI 273
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 30.1 bits (68), Expect = 4.4
Identities = 2/17 (11%), Positives = 5/17 (29%)
Query: 292 LNFPNDLKIDPNDNIWI 308
+D+ D +
Sbjct: 134 AYCIDDMVFDSKGGFYF 150
Score = 30.1 bits (68), Expect = 4.4
Identities = 2/17 (11%), Positives = 5/17 (29%)
Query: 732 LNFPNDLKIDPNDNIWI 748
+D+ D +
Sbjct: 134 AYCIDDMVFDSKGGFYF 150
Score = 30.1 bits (68), Expect = 4.4
Identities = 2/17 (11%), Positives = 5/17 (29%)
Query: 1182 LNFPNDLKIDPNDNIWI 1198
+D+ D +
Sbjct: 134 AYCIDDMVFDSKGGFYF 150
>3foa_A Tail sheath protein GP18; alpha-beta, viral structural protein,
bacteriophage T4, viral protein; 3.50A {Enterobacteria
phage T4} PDB: 3foh_A 3foi_A
Length = 510
Score = 29.7 bits (64), Expect = 6.8
Identities = 33/413 (7%), Positives = 98/413 (23%), Gaps = 15/413 (3%)
Query: 607 GKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNSSRYVN 666
G+ +Y+ ++ N + +R R +S + + + ++ +
Sbjct: 55 GQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGD 114
Query: 667 SSDIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVTKHSVGC--------WNTKTKVYL 718
+ + + + T+ A + + + T
Sbjct: 115 KITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSS 174
Query: 719 PQTQDIVQTSRDILNFPNDLKIDPNDNIWILSNKLHQYLYGFLDFNVYNYRILVANSNDI 778
V T I+ L + + ++ Q + I
Sbjct: 175 SSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKI 234
Query: 779 KNNNQPPNTKSNAGPARPSTDQTKSFHPSVPSIYPSVPSNAYPSSSHFQVVFRWKIMDFV 838
+ + A S + + V
Sbjct: 235 EIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVV 294
Query: 839 FRDNKQKANLIRSNKFIPENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASFNMNDPSESP 898
+ ++ SN +I + G +T + + + + + +
Sbjct: 295 LSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGD 354
Query: 899 ILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRL---WIMDTGVTNILSSIQQLCPPKIMV 955
++ + ++ + + I+ + + + PP+ V
Sbjct: 355 LMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETV 414
Query: 956 FDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYV----NDVFRY 1004
+ + + + + ++ D + Y NDV R+
Sbjct: 415 VGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRW 467
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.428
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,017,791
Number of extensions: 1138015
Number of successful extensions: 2918
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2802
Number of HSP's successfully gapped: 93
Length of query: 1228
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1123
Effective length of database: 3,770,088
Effective search space: 4233808824
Effective search space used: 4233808824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.0 bits)