RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11781
         (1228 letters)



>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 260

 Score = 32.5 bits (72), Expect = 0.27
 Identities = 11/140 (7%), Positives = 31/140 (22%)

Query: 169 YKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNSSRYVNSS 228
            +    +          G N    +    +       +          D   +    ++ 
Sbjct: 100 PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD 159

Query: 229 DIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTS 288
           +         S  +            G+      T +       +    L  +       
Sbjct: 160 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP 219

Query: 289 RDILNFPNDLKIDPNDNIWI 308
              LN P  + +D +  +++
Sbjct: 220 FTGLNTPLAVAVDSDRTVYV 239



 Score = 32.5 bits (72), Expect = 0.27
 Identities = 11/140 (7%), Positives = 31/140 (22%)

Query: 609 YKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNSSRYVNSS 668
            +    +          G N    +    +       +          D   +    ++ 
Sbjct: 100 PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD 159

Query: 669 DIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTS 728
           +         S  +            G+      T +       +    L  +       
Sbjct: 160 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP 219

Query: 729 RDILNFPNDLKIDPNDNIWI 748
              LN P  + +D +  +++
Sbjct: 220 FTGLNTPLAVAVDSDRTVYV 239



 Score = 32.5 bits (72), Expect = 0.27
 Identities = 11/140 (7%), Positives = 31/140 (22%)

Query: 1059 YKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSLSSNRHYYVSTTDLRNSSRYVNSS 1118
             +    +          G N    +    +       +          D   +    ++ 
Sbjct: 100  PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD 159

Query: 1119 DIDEYFHYLGSRFRNTQASASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTS 1178
            +         S  +            G+      T +       +    L  +       
Sbjct: 160  NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP 219

Query: 1179 RDILNFPNDLKIDPNDNIWI 1198
               LN P  + +D +  +++
Sbjct: 220  FTGLNTPLAVAVDSDRTVYV 239


>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 105

 Score = 27.3 bits (60), Expect = 3.7
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 148 LKFRWVDGIFGMAISPELSGKY---KRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHS 204
           L      G F +  S   +G +    R   +     V HY   N+D         + F  
Sbjct: 21  LAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPG 80

Query: 205 LSSNRHYYVSTTD 217
           L     +Y + +D
Sbjct: 81  LHELVRHYTNASD 93



 Score = 27.3 bits (60), Expect = 3.7
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 588 LKFRWVDGIFGMAISPELSGKY---KRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHS 644
           L      G F +  S   +G +    R   +     V HY   N+D         + F  
Sbjct: 21  LAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPG 80

Query: 645 LSSNRHYYVSTTD 657
           L     +Y + +D
Sbjct: 81  LHELVRHYTNASD 93



 Score = 27.3 bits (60), Expect = 3.7
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 1038 LKFRWVDGIFGMAISPELSGKY---KRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHS 1094
            L      G F +  S   +G +    R   +     V HY   N+D         + F  
Sbjct: 21   LAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPG 80

Query: 1095 LSSNRHYYVSTTD 1107
            L     +Y + +D
Sbjct: 81   LHELVRHYTNASD 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,834,083
Number of extensions: 235677
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 35
Length of query: 1228
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1132
Effective length of database: 1,089,516
Effective search space: 1233332112
Effective search space used: 1233332112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)