Query psy11783
Match_columns 189
No_of_seqs 121 out of 604
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:52:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3626|consensus 100.0 4.5E-43 9.8E-48 333.7 13.2 147 5-159 552-699 (735)
2 TIGR00805 oat sodium-independe 100.0 5.7E-42 1.2E-46 323.7 12.0 143 8-160 489-633 (633)
3 PF03137 OATP: Organic Anion T 100.0 1.3E-33 2.8E-38 263.1 0.0 103 31-133 435-539 (539)
4 KOG1330|consensus 96.9 0.0014 2.9E-08 61.2 5.3 64 46-109 349-412 (493)
5 TIGR00892 2A0113 monocarboxyla 94.4 0.026 5.6E-07 51.2 2.3 40 69-109 356-395 (455)
6 TIGR00788 fbt folate/biopterin 92.0 0.13 2.7E-06 47.3 2.9 54 55-109 360-413 (468)
7 TIGR00889 2A0110 nucleoside tr 91.5 0.084 1.8E-06 47.4 1.2 41 69-109 331-371 (418)
8 PRK09556 uhpT sugar phosphate 90.2 0.33 7.2E-06 43.9 3.8 40 70-109 373-412 (467)
9 PRK10489 enterobactin exporter 88.8 0.32 6.9E-06 42.9 2.5 39 70-109 336-374 (417)
10 TIGR00883 2A0106 metabolite-pr 86.2 0.084 1.8E-06 44.8 -2.6 45 65-109 331-375 (394)
11 TIGR00900 2A0121 H+ Antiporter 83.3 0.15 3.3E-06 42.8 -2.3 46 63-109 318-363 (365)
12 TIGR00893 2A0114 d-galactonate 81.9 1.8 3.8E-05 36.3 3.7 43 66-109 331-373 (399)
13 PRK11273 glpT sn-glycerol-3-ph 81.7 0.59 1.3E-05 42.1 0.8 39 71-109 372-410 (452)
14 TIGR00879 SP MFS transporter, 81.1 0.85 1.8E-05 39.6 1.5 38 71-109 408-445 (481)
15 PF03209 PUCC: PUCC protein; 81.0 1.9 4.1E-05 39.8 3.7 77 60-158 103-179 (403)
16 KOG2504|consensus 80.9 2.6 5.5E-05 39.7 4.7 40 69-109 411-450 (509)
17 TIGR01299 synapt_SV2 synaptic 80.7 0.58 1.3E-05 46.1 0.4 39 70-109 672-710 (742)
18 TIGR00887 2A0109 phosphate:H+ 79.9 1.7 3.8E-05 39.7 3.2 43 71-114 417-459 (502)
19 TIGR00881 2A0104 phosphoglycer 78.4 0.8 1.7E-05 38.5 0.5 39 70-109 334-372 (379)
20 PRK03893 putative sialic acid 77.6 1.2 2.6E-05 40.0 1.4 37 72-109 392-428 (496)
21 PRK11551 putative 3-hydroxyphe 77.4 3.1 6.8E-05 36.2 4.0 39 70-109 332-370 (406)
22 PF07690 MFS_1: Major Facilita 76.1 1.3 2.8E-05 37.1 1.1 61 48-109 87-147 (352)
23 TIGR00805 oat sodium-independe 74.9 6.4 0.00014 37.9 5.6 39 69-108 195-233 (633)
24 TIGR00895 2A0115 benzoate tran 74.6 0.94 2E-05 38.5 -0.1 42 65-107 357-398 (398)
25 TIGR00880 2_A_01_02 Multidrug 74.3 0.81 1.8E-05 32.5 -0.5 41 67-108 72-112 (141)
26 TIGR01272 gluP glucose/galacto 74.2 2 4.4E-05 37.1 1.9 63 46-109 10-72 (310)
27 cd06174 MFS The Major Facilita 73.6 1.7 3.8E-05 35.9 1.3 46 62-108 281-326 (352)
28 TIGR00891 2A0112 putative sial 73.3 0.99 2.1E-05 38.7 -0.3 39 70-109 352-390 (405)
29 TIGR00893 2A0114 d-galactonate 73.1 1 2.2E-05 37.8 -0.2 44 65-109 101-144 (399)
30 PRK11663 regulatory protein Uh 72.5 3.3 7.1E-05 37.1 2.8 37 72-109 363-399 (434)
31 TIGR00900 2A0121 H+ Antiporter 72.5 4.5 9.7E-05 33.9 3.5 46 62-108 108-153 (365)
32 COG2271 UhpC Sugar phosphate p 72.5 7 0.00015 36.6 5.0 79 60-159 357-438 (448)
33 TIGR00901 2A0125 AmpG-related 72.4 2.5 5.4E-05 36.2 2.0 51 58-109 95-145 (356)
34 PF15048 OSTbeta: Organic solu 71.8 8.1 0.00018 30.1 4.5 44 128-171 31-74 (125)
35 PRK05122 major facilitator sup 71.6 2.8 6.1E-05 36.5 2.2 39 70-109 326-364 (399)
36 TIGR02332 HpaX 4-hydroxyphenyl 71.2 3.6 7.9E-05 36.6 2.8 36 73-109 360-395 (412)
37 TIGR00881 2A0104 phosphoglycer 68.8 1 2.2E-05 37.9 -1.2 43 65-108 102-145 (379)
38 PRK11102 bicyclomycin/multidru 68.0 4.4 9.5E-05 34.7 2.6 42 67-109 100-141 (377)
39 TIGR00894 2A0114euk Na(+)-depe 67.6 2.3 5.1E-05 38.1 0.8 39 70-109 155-193 (465)
40 TIGR00710 efflux_Bcr_CflA drug 67.5 3.5 7.6E-05 35.1 1.8 42 67-109 114-155 (385)
41 PRK11646 multidrug resistance 66.8 2.4 5.2E-05 37.6 0.7 41 68-109 319-359 (400)
42 PRK09528 lacY galactoside perm 66.2 1.9 4.1E-05 38.1 -0.1 37 73-109 342-378 (420)
43 TIGR00712 glpT glycerol-3-phos 64.6 8.4 0.00018 34.4 3.8 41 67-108 139-179 (438)
44 PF06637 PV-1: PV-1 protein (P 64.1 7.1 0.00015 36.0 3.2 18 120-141 17-34 (442)
45 PF04277 OAD_gamma: Oxaloaceta 63.6 19 0.00041 24.9 4.7 19 131-149 4-22 (79)
46 TIGR00894 2A0114euk Na(+)-depe 62.7 14 0.00031 33.0 4.9 32 77-109 391-422 (465)
47 PRK11663 regulatory protein Uh 62.6 6.4 0.00014 35.2 2.6 43 65-108 130-172 (434)
48 PF05977 MFS_3: Transmembrane 62.4 4.8 0.0001 38.0 1.9 43 65-109 326-369 (524)
49 PRK09952 shikimate transporter 61.7 1.9 4.2E-05 38.7 -0.9 40 70-109 367-406 (438)
50 PRK10473 multidrug efflux syst 61.5 6 0.00013 34.4 2.2 40 68-108 113-152 (392)
51 TIGR00890 2A0111 Oxalate/Forma 60.2 1.8 3.8E-05 36.4 -1.3 39 70-109 319-357 (377)
52 PRK06814 acylglycerophosphoeth 60.2 9.7 0.00021 38.5 3.7 42 66-108 128-169 (1140)
53 TIGR00898 2A0119 cation transp 60.0 11 0.00024 34.0 3.8 36 68-104 432-467 (505)
54 PRK08633 2-acyl-glycerophospho 60.0 10 0.00022 38.0 3.8 43 66-109 123-165 (1146)
55 PRK03699 putative transporter; 59.9 18 0.0004 31.6 5.0 40 68-108 117-156 (394)
56 PF01102 Glycophorin_A: Glycop 58.8 18 0.0004 28.0 4.2 9 178-186 113-121 (122)
57 PRK10642 proline/glycine betai 58.6 12 0.00026 34.1 3.8 36 73-109 369-404 (490)
58 PRK09874 drug efflux system pr 58.3 6.2 0.00013 34.1 1.7 39 70-109 335-373 (408)
59 PRK15075 citrate-proton sympor 57.6 2.4 5.2E-05 37.8 -1.0 40 70-109 355-394 (434)
60 PRK11902 ampG muropeptide tran 57.5 13 0.00028 32.7 3.6 42 67-109 324-365 (402)
61 PF06679 DUF1180: Protein of u 57.0 20 0.00043 29.2 4.3 54 126-179 88-144 (163)
62 PRK12307 putative sialic acid 56.3 1.9 4.1E-05 37.8 -1.8 38 71-109 346-383 (426)
63 TIGR00898 2A0119 cation transp 55.6 8.6 0.00019 34.7 2.3 39 67-106 201-239 (505)
64 PRK11195 lysophospholipid tran 55.2 6.6 0.00014 34.7 1.4 41 68-109 110-150 (393)
65 PRK11273 glpT sn-glycerol-3-ph 55.1 11 0.00023 34.0 2.7 37 66-102 140-176 (452)
66 TIGR00792 gph sugar (Glycoside 54.6 6.2 0.00013 34.6 1.1 32 77-109 349-380 (437)
67 TIGR00897 2A0118 polyol permea 54.3 11 0.00025 33.1 2.8 36 73-109 341-376 (402)
68 PRK03545 putative arabinose tr 54.3 11 0.00025 32.7 2.7 34 75-109 322-355 (390)
69 PF15330 SIT: SHP2-interacting 53.7 22 0.00047 26.9 3.8 32 136-167 3-34 (107)
70 PRK10213 nepI ribonucleoside t 53.3 11 0.00023 33.4 2.5 39 69-108 131-169 (394)
71 TIGR00711 efflux_EmrB drug res 52.0 2.5 5.5E-05 37.6 -1.8 45 64-109 366-410 (485)
72 PF11700 ATG22: Vacuole efflux 51.9 8.3 0.00018 36.0 1.6 43 67-110 401-443 (477)
73 PTZ00201 amastin surface glyco 50.8 77 0.0017 26.4 7.0 81 42-157 2-94 (192)
74 TIGR00712 glpT glycerol-3-phos 50.3 3.1 6.8E-05 37.1 -1.4 39 71-109 370-408 (438)
75 PRK12382 putative transporter; 48.2 2.9 6.3E-05 36.4 -2.0 39 70-109 326-364 (392)
76 PRK14995 methyl viologen resis 47.8 16 0.00034 33.4 2.7 36 73-109 121-157 (495)
77 TIGR01301 GPH_sucrose GPH fami 47.8 25 0.00053 33.0 4.0 57 48-105 116-174 (477)
78 PRK09874 drug efflux system pr 47.6 16 0.00034 31.6 2.5 39 70-109 130-168 (408)
79 PF09777 OSTMP1: Osteopetrosis 47.3 26 0.00055 30.0 3.7 46 113-162 171-218 (237)
80 PF11669 WBP-1: WW domain-bind 46.5 39 0.00085 25.1 4.2 13 111-124 3-15 (102)
81 PRK09584 tppB putative tripept 46.5 23 0.0005 32.7 3.6 38 70-108 136-175 (500)
82 PRK11043 putative transporter; 45.9 31 0.00066 30.0 4.1 36 71-108 321-356 (401)
83 TIGR00711 efflux_EmrB drug res 45.1 7 0.00015 34.7 -0.0 44 65-109 109-152 (485)
84 TIGR00891 2A0112 putative sial 44.6 10 0.00022 32.4 0.8 41 68-109 122-162 (405)
85 KOG3762|consensus 43.8 68 0.0015 31.3 6.3 36 74-109 487-522 (618)
86 cd06174 MFS The Major Facilita 43.6 15 0.00032 30.3 1.7 44 65-109 106-149 (352)
87 PRK10504 putative transporter; 43.2 15 0.00033 32.7 1.9 43 66-109 373-415 (471)
88 PRK11010 ampG muropeptide tran 42.5 28 0.00061 32.0 3.5 44 65-109 335-378 (491)
89 PF03825 Nuc_H_symport: Nucleo 41.5 23 0.00051 32.1 2.8 44 66-109 321-364 (400)
90 PLN00028 nitrate transmembrane 41.3 31 0.00068 31.4 3.6 29 75-108 376-404 (476)
91 PRK10489 enterobactin exporter 40.9 10 0.00022 33.4 0.3 46 63-109 127-172 (417)
92 PF05977 MFS_3: Transmembrane 40.6 37 0.00081 32.1 4.1 45 63-108 119-164 (524)
93 KOG2615|consensus 38.6 25 0.00053 32.9 2.4 63 54-125 360-422 (451)
94 PRK06814 acylglycerophosphoeth 38.4 20 0.00043 36.2 2.0 51 57-108 345-395 (1140)
95 COG1983 PspC Putative stress-r 38.2 79 0.0017 22.2 4.4 43 118-160 18-62 (70)
96 TIGR01195 oadG_fam sodium pump 38.2 1.2E+02 0.0025 21.7 5.4 21 131-151 7-27 (82)
97 PF13347 MFS_2: MFS/sugar tran 37.8 70 0.0015 28.4 5.2 36 56-91 113-149 (428)
98 PF12606 RELT: Tumour necrosis 36.7 58 0.0013 21.4 3.3 9 151-159 17-25 (50)
99 TIGR02718 sider_RhtX_FptX side 36.7 8.4 0.00018 33.6 -0.9 43 66-109 323-366 (390)
100 PRK13751 putative mercuric tra 36.1 73 0.0016 24.5 4.3 35 116-150 74-108 (116)
101 PRK10207 dipeptide/tripeptide 35.5 34 0.00073 31.7 2.9 37 62-99 395-431 (489)
102 KOG4686|consensus 35.4 71 0.0015 29.3 4.7 36 73-109 379-414 (459)
103 PRK10091 MFS transport protein 35.4 26 0.00057 30.4 2.1 30 79-109 321-350 (382)
104 PRK10054 putative transporter; 34.9 8.5 0.00018 34.0 -1.1 37 71-109 323-359 (395)
105 PF04024 PspC: PspC domain; I 34.8 90 0.0019 21.0 4.2 32 127-159 26-57 (61)
106 PRK03545 putative arabinose tr 34.6 31 0.00067 30.0 2.4 39 69-108 120-158 (390)
107 KOG4193|consensus 34.6 37 0.0008 33.1 3.0 48 120-167 458-506 (610)
108 PF12768 Rax2: Cortical protei 34.3 59 0.0013 28.5 4.0 31 149-179 246-278 (281)
109 COG4736 CcoQ Cbb3-type cytochr 33.7 58 0.0013 22.2 3.1 19 142-160 14-32 (60)
110 PRK10077 xylE D-xylose transpo 33.3 79 0.0017 28.0 4.8 27 69-95 387-413 (479)
111 PRK10406 alpha-ketoglutarate t 33.0 11 0.00025 33.5 -0.7 37 72-109 362-398 (432)
112 TIGR00924 yjdL_sub1_fam amino 32.9 28 0.0006 31.9 1.9 108 46-175 102-212 (475)
113 TIGR00897 2A0118 polyol permea 32.7 8.5 0.00018 33.9 -1.5 40 70-109 129-168 (402)
114 PRK11646 multidrug resistance 32.2 31 0.00068 30.5 2.0 42 66-108 119-160 (400)
115 PF00558 Vpu: Vpu protein; In 32.2 75 0.0016 23.0 3.6 16 144-159 16-31 (81)
116 PRK11551 putative 3-hydroxyphe 32.0 31 0.00067 29.9 1.9 40 67-107 124-163 (406)
117 PF04277 OAD_gamma: Oxaloaceta 31.2 1.1E+02 0.0023 21.0 4.3 15 142-156 18-32 (79)
118 PRK11195 lysophospholipid tran 31.2 49 0.0011 29.2 3.1 44 62-106 309-353 (393)
119 TIGR00806 rfc RFC reduced fola 29.9 25 0.00053 33.6 1.0 39 66-105 134-172 (511)
120 KOG2927|consensus 28.9 61 0.0013 29.7 3.2 19 120-138 176-194 (372)
121 KOG3626|consensus 28.8 1.6E+02 0.0034 29.6 6.3 107 48-161 235-346 (735)
122 TIGR00903 2A0129 major facilit 28.5 7.1 0.00015 34.6 -2.7 37 70-107 304-340 (368)
123 PF15468 DUF4636: Domain of un 28.5 1.7E+02 0.0037 25.1 5.7 41 116-161 27-67 (243)
124 PRK14995 methyl viologen resis 28.5 12 0.00025 34.3 -1.4 49 60-109 365-413 (495)
125 KOG0255|consensus 28.4 60 0.0013 29.7 3.2 61 46-108 171-231 (521)
126 PF02411 MerT: MerT mercuric t 28.3 1.1E+02 0.0025 23.3 4.2 35 116-150 74-108 (116)
127 TIGR00885 fucP L-fucose:H+ sym 27.5 65 0.0014 28.8 3.3 45 62-107 110-154 (410)
128 PRK05122 major facilitator sup 27.5 13 0.00027 32.4 -1.3 39 69-108 135-173 (399)
129 PRK02919 oxaloacetate decarbox 27.4 1.5E+02 0.0032 21.3 4.5 24 132-155 11-34 (82)
130 PRK15462 dipeptide/tripeptide 27.4 52 0.0011 31.0 2.7 35 73-108 127-163 (493)
131 TIGR00792 gph sugar (Glycoside 27.2 1.1E+02 0.0025 26.6 4.7 27 64-90 117-144 (437)
132 TIGR00902 2A0127 phenyl propri 26.9 14 0.00031 32.2 -1.1 37 73-109 319-355 (382)
133 PF15128 T_cell_tran_alt: T-ce 26.9 1.2E+02 0.0026 22.3 3.9 31 129-159 20-50 (92)
134 KOG3498|consensus 26.6 33 0.00071 23.9 0.9 26 71-96 22-52 (67)
135 PRK11128 putative 3-phenylprop 26.6 12 0.00027 32.6 -1.6 45 65-109 311-355 (382)
136 PF01372 Melittin: Melittin; 26.6 65 0.0014 18.2 1.9 24 138-161 1-25 (26)
137 TIGR00847 ccoS cytochrome oxid 26.4 1.7E+02 0.0037 19.2 4.3 18 152-170 20-37 (51)
138 PTZ00207 hypothetical protein; 26.0 53 0.0012 31.7 2.5 37 69-106 143-179 (591)
139 PF12591 DUF3762: Protein of u 25.8 27 0.00059 24.6 0.4 14 96-109 6-19 (80)
140 PF05545 FixQ: Cbb3-type cytoc 24.9 59 0.0013 20.6 1.9 14 147-160 19-32 (49)
141 PF03839 Sec62: Translocation 24.4 1.1E+02 0.0023 26.2 3.8 13 122-134 99-111 (224)
142 PRK09584 tppB putative tripept 24.4 1.2E+02 0.0026 28.0 4.5 19 70-88 406-424 (500)
143 PRK10720 uracil transporter; P 24.4 55 0.0012 30.1 2.2 24 89-112 320-343 (428)
144 PRK10697 DNA-binding transcrip 24.3 2E+02 0.0043 22.1 5.0 32 128-160 32-65 (118)
145 PRK11902 ampG muropeptide tran 24.2 17 0.00037 31.9 -1.1 51 57-108 105-155 (402)
146 PRK09848 glucuronide transport 24.0 46 0.00099 29.7 1.6 40 69-109 342-388 (448)
147 PF03597 CcoS: Cytochrome oxid 23.7 1.9E+02 0.0041 18.4 4.0 15 155-170 22-36 (45)
148 PRK03893 putative sialic acid 23.5 13 0.00027 33.4 -2.1 40 68-108 130-169 (496)
149 TIGR00879 SP MFS transporter, 23.2 69 0.0015 27.6 2.5 34 69-103 150-183 (481)
150 TIGR00890 2A0111 Oxalate/Forma 23.0 82 0.0018 26.2 2.9 31 77-108 121-151 (377)
151 PRK10091 MFS transport protein 22.9 83 0.0018 27.3 3.0 38 70-108 115-152 (382)
152 KOG2678|consensus 22.5 1.3E+02 0.0028 26.0 3.9 38 123-160 205-242 (244)
153 TIGR00885 fucP L-fucose:H+ sym 22.4 23 0.00049 31.8 -0.7 42 65-109 340-381 (410)
154 PF15050 SCIMP: SCIMP protein 22.2 1.4E+02 0.0029 23.4 3.6 14 137-150 10-23 (133)
155 PF15102 TMEM154: TMEM154 prot 22.2 50 0.0011 26.4 1.3 13 154-166 78-90 (146)
156 PF10530 Toxin_35: Toxin with 21.9 67 0.0015 17.8 1.4 18 111-128 1-20 (23)
157 COG2271 UhpC Sugar phosphate p 21.8 36 0.00077 32.0 0.4 64 46-109 117-181 (448)
158 PRK14789 lipoprotein signal pe 21.5 2.9E+02 0.0062 22.9 5.7 37 76-112 86-122 (191)
159 PF01102 Glycophorin_A: Glycop 21.2 1.1E+02 0.0024 23.6 3.0 9 134-142 68-76 (122)
160 PF05568 ASFV_J13L: African sw 20.9 1.5E+02 0.0033 24.0 3.8 29 132-160 27-55 (189)
161 TIGR00886 2A0108 nitrite extru 20.7 51 0.0011 27.8 1.2 43 66-108 110-155 (366)
162 TIGR00895 2A0115 benzoate tran 20.6 10 0.00023 32.0 -3.1 40 69-109 128-167 (398)
163 PRK15403 multidrug efflux syst 20.5 1E+02 0.0022 27.4 3.1 35 73-108 131-165 (413)
164 PF11368 DUF3169: Protein of u 20.4 1.4E+02 0.0029 25.3 3.7 14 47-60 9-22 (248)
165 TIGR00899 2A0120 sugar efflux 20.3 19 0.00042 30.5 -1.5 34 75-109 316-349 (375)
166 PRK10504 putative transporter; 20.3 19 0.00041 32.2 -1.7 39 70-109 122-160 (471)
167 PF03381 CDC50: LEM3 (ligand-e 20.1 1.6E+02 0.0035 25.6 4.2 25 132-156 245-269 (278)
No 1
>KOG3626|consensus
Probab=100.00 E-value=4.5e-43 Score=333.65 Aligned_cols=147 Identities=35% Similarity=0.729 Sum_probs=135.8
Q ss_pred CCceeeeeceeccCCCCCCccCCCCCCceeecCCCCCCCch-hHHHHHHHHHHHHHHhhccccceeeEEeecCCCCchHH
Q psy11783 5 KTVALFSNCTCMSGMWGNGTILPDPLATTASLGPCENDCVS-VKWYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMA 83 (189)
Q Consensus 5 ~~~~~y~~CsCi~~~~~~~~~~~~~~~~~a~~G~C~~~C~~-~~~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~A 83 (189)
+++++|+||+|++ .+ .+.+..|++|.|+++|.+ +++|++++++.+|+++++++|.++++||+|++||||+|
T Consensus 552 ~~~~~ytnCsCv~-~~-------~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~A 623 (735)
T KOG3626|consen 552 DGNTIYTNCSCVP-TN-------KNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFA 623 (735)
T ss_pred CCceeeccccccc-cc-------cCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhh
Confidence 4678999999994 11 124568999999999755 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccceeeeeeeccccccccccCCCccceEEeechhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11783 84 LGLIQFAIGLFGNVPCPIVYGAVVDSACLVWESVCGEKGACNLYDTDVFRVFYHGTTGFILLLAFFVDTIVWYKAG 159 (189)
Q Consensus 84 lG~~~~~~rllg~IPgPi~fG~liD~tCl~W~~~Cg~~g~C~~YD~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k 159 (189)
||+||+++|+||+||+||+||++||++|++|+++|+++|+||+||++.||+.|+++.+++++++++++++.||.+|
T Consensus 624 lG~~~~~irllg~IPsPIifG~~ID~tCl~W~~~C~~~GsC~iYd~~~lr~~y~gl~~~~~~~~~i~~i~~~~v~r 699 (735)
T KOG3626|consen 624 LGFQWMLIRLLGFIPSPIIFGAVIDTTCLLWGKSCGSRGSCLIYDNDSLRYRYLGLHIILKVIALILLIIDLYVWR 699 (735)
T ss_pred hHHHHHHHHHHhcCCchHhhhhhHhhHHHHhhcccCCCCceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888887666
No 2
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=100.00 E-value=5.7e-42 Score=323.68 Aligned_cols=143 Identities=29% Similarity=0.701 Sum_probs=133.5
Q ss_pred eeeeeceeccCCCCCCccCCCCCCceeecCCCCCCCch-hHHHHHHHHHHHHHHhhccccceeeEEeecCCCCchHHHHH
Q psy11783 8 ALFSNCTCMSGMWGNGTILPDPLATTASLGPCENDCVS-VKWYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGL 86 (189)
Q Consensus 8 ~~y~~CsCi~~~~~~~~~~~~~~~~~a~~G~C~~~C~~-~~~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~ 86 (189)
++|+||+|++ +. ....|++|+|+++|++ +++|++++++..|++++..+|.++++||+|+++|||+|||+
T Consensus 489 ~~y~~CsCi~----~~------~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~ 558 (633)
T TIGR00805 489 MVYTNCSCVQ----TP------GNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGL 558 (633)
T ss_pred ceeccccccc----CC------CCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhH
Confidence 4699999993 21 1345889999999988 88899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccceeeeeeecccccccccc-CCCccceEEeechhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy11783 87 IQFAIGLFGNVPCPIVYGAVVDSACLVWESV-CGEKGACNLYDTDVFRVFYHGTTGFILLLAFFVDTIVWYKAGS 160 (189)
Q Consensus 87 ~~~~~rllg~IPgPi~fG~liD~tCl~W~~~-Cg~~g~C~~YD~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k~ 160 (189)
|++++|+||+|||||+||++||++|++|+++ ||+||+||+|||++||+.++++++++|++++++++++|+++|+
T Consensus 559 ~~~~~rllg~iP~pi~fG~~iD~sC~~W~~~~cg~~g~C~~Yd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 633 (633)
T TIGR00805 559 QWLCMRVFATIPAPILFGLLIDVSCLHWQTLCCGARGACRMYDNDNLRNIYLGLTIALRGSGLLLLFFILILMKK 633 (633)
T ss_pred HHHHHHHhcCCChhHHHhhhhhchhheeccccCCCCCceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999999999999999999999999999976 9999999999999999999999999999999999999999874
No 3
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.97 E-value=1.3e-33 Score=263.13 Aligned_cols=103 Identities=41% Similarity=0.877 Sum_probs=0.0
Q ss_pred CceeecCCCCCCC-chhHHHHHHHHHHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 31 ATTASLGPCENDC-VSVKWYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 31 ~~~a~~G~C~~~C-~~~~~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+++|++|.|+++| +++++|++++++..+++++..+|.++++||||+++|||+|+|+|++++|+||+|||||+||++||+
T Consensus 435 ~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 435 NGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 4578899999995 558999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccC-CCccceEEeechhHH
Q psy11783 110 ACLVWESVC-GEKGACNLYDTDVFR 133 (189)
Q Consensus 110 tCl~W~~~C-g~~g~C~~YD~~~l~ 133 (189)
+|++|+++| |+||+||+|||++||
T Consensus 515 tCl~W~~~C~g~~G~C~~YD~~~lR 539 (539)
T PF03137_consen 515 TCLLWQTNCCGSRGSCWLYDNDKLR 539 (539)
T ss_dssp -------------------------
T ss_pred hhhhcCCCCCCCCCeEEEecchhcC
Confidence 999999999 999999999999997
No 4
>KOG1330|consensus
Probab=96.93 E-value=0.0014 Score=61.24 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 46 VKWYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 46 ~~~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
++.+++++++...+......++.-+.+-+|+|+.|+.|..++.++.++||+.++|-+.|.+.|.
T Consensus 349 ~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 349 MIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred HHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 5566677777788888888888889999999999999999999999999999999999999996
No 5
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=94.36 E-value=0.026 Score=51.22 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=33.4
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+..+.+++++++.++|+..... -+|.+=||+++|.++|.
T Consensus 356 ~~~~~~~~~~~~g~~~g~~~~~~-~lg~~igp~i~G~l~~~ 395 (455)
T TIGR00892 356 EVLMDLVGAQRFSSAVGLVTIVE-CCAVLIGPPLAGRLVDA 395 (455)
T ss_pred HHHHHHhhHHHHhhHHhHHHHHH-HHHHHccccceeeeehh
Confidence 34557789999999999987775 55888899999999995
No 6
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=92.01 E-value=0.13 Score=47.32 Aligned_cols=54 Identities=7% Similarity=0.101 Sum_probs=42.2
Q ss_pred HHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 55 FFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 55 ~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+..+...+..+|.+..+.|.+|+++++.+.|+...+. -+|.+-|+++.|.+.+.
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~-~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASIL-HLGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3344455566777777889999999999999999886 67777777888888775
No 7
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=91.49 E-value=0.084 Score=47.43 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=35.7
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..+-+.+|+++|+.+.|+......-+|.+-||++.|++.|.
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34567889999999999998777788889999999999995
No 8
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=90.18 E-value=0.33 Score=43.91 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=36.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.....+|++.++.|.|+...+..+.|.+-+|.++|+++|.
T Consensus 373 ~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~ 412 (467)
T PRK09556 373 AAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADP 412 (467)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcc
Confidence 3448899999999999999999999999999999999995
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=88.76 E-value=0.32 Score=42.94 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=32.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+..+.+|++.|+.+.|+...+ .-+|..-||.++|++.|.
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~-~~~g~~~g~~l~G~l~~~ 374 (417)
T PRK10489 336 LLQTQTPDEMLGRINGLWTAQ-NVTGDAIGAALLGGLGAM 374 (417)
T ss_pred HHHhhCCHHHHHHHHHHHHHH-HhhhHhHHHHHHHHHHHH
Confidence 445777888999999998764 457889999999999995
No 10
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=86.19 E-value=0.084 Score=44.81 Aligned_cols=45 Identities=11% Similarity=-0.060 Sum_probs=37.8
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+....+.+.+|+++|+.+.|+...+...+|..-+|++.|++.|.
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~ 375 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence 444445567889999999999988888899999999999999995
No 11
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=83.28 E-value=0.15 Score=42.83 Aligned_cols=46 Identities=17% Similarity=0.002 Sum_probs=36.9
Q ss_pred ccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 63 SEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 63 ~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..++......+.+|+++|+.+.|+...+..+ |..-||++.|.++|.
T Consensus 318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 318 INVPQGTLLQRRVPAELLGRVFGAQFSLSHA-AWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344445667899999999999999998875 666799999999985
No 12
>TIGR00893 2A0114 d-galactonate transporter.
Probab=81.86 E-value=1.8 Score=36.33 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=35.5
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 66 GSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 66 p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+.....-+.+|+++|+.+.|+...+. -+|.+-+|.+.|++.|.
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~i~g~l~~~ 373 (399)
T TIGR00893 331 IGWALISDNAPGNIAGLTGGLINSLG-NLGGIVGPIVIGAIAAT 373 (399)
T ss_pred HHHHHHHhhcChhHHHHHHHHHHHHH-HHhhhhhhHHhhhhccC
Confidence 33345568889999999999999887 56778899999999985
No 13
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=81.68 E-value=0.59 Score=42.07 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=32.2
Q ss_pred EEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 71 ILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 71 ~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..+.+|+++|+.+.|+...+..+-|.+=||.++|++.|.
T Consensus 372 ~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~ 410 (452)
T PRK11273 372 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 410 (452)
T ss_pred HHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 457889999999999998887665555589999999985
No 14
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=81.06 E-value=0.85 Score=39.56 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=31.9
Q ss_pred EEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 71 ILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 71 ~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.-..+++++|+.+.|+..+..+ +|.+-+|.++|++.|.
T Consensus 408 ~~~~~p~~~~~~~~~~~~~~~~-lg~~i~~~~~~~~~~~ 445 (481)
T TIGR00879 408 VSEIFPLSLRPKGISIAVAANW-LANFIVGFLFPTMLES 445 (481)
T ss_pred hhccCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 3578889999999999887665 6788899999999885
No 15
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=80.96 E-value=1.9 Score=39.83 Aligned_cols=77 Identities=13% Similarity=0.307 Sum_probs=57.9
Q ss_pred HhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeeccccccccccCCCccceEEeechhHHHHHHHH
Q psy11783 60 HSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDSACLVWESVCGEKGACNLYDTDVFRVFYHGT 139 (189)
Q Consensus 60 ~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~tCl~W~~~Cg~~g~C~~YD~~~l~~~~~~l 139 (189)
...+++|...+.--.+++++|+-+.++.|+++ ++|.|=+.+++|.+.|. |+..+|-..+.+.
T Consensus 103 ~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Ml-i~G~iv~ai~~g~lL~~-----------------~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 103 VHASGTSFLALLADLAPEERRPRVVAIVWVML-IVGIIVSAIVFGRLLDP-----------------FSPERLIQVIQGV 164 (403)
T ss_pred HhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHH-HHHHHHHHHHHHHHccc-----------------cCHHHHHHHHHHH
Confidence 34567777777778899999999999999864 58999999999999996 8888887766654
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy11783 140 TGFILLLAFFVDTIVWYKA 158 (189)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~ 158 (189)
.++ .+++.+++.|-.
T Consensus 165 a~i----~~~l~~ia~wg~ 179 (403)
T PF03209_consen 165 ALI----ALLLNLIALWGQ 179 (403)
T ss_pred HHH----HHHHHHHHHHhc
Confidence 443 344554554444
No 16
>KOG2504|consensus
Probab=80.91 E-value=2.6 Score=39.74 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=32.8
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.++.+.|..++=+-|.|+..++..+. .+-||.+.|++.|.
T Consensus 411 ~i~~~~~g~~~l~~a~Gl~l~~~gi~-~l~gpPiag~~~d~ 450 (509)
T KOG2504|consen 411 VILVDLVGLEKLSNAYGLLLLFQGIG-ALVGPPIAGLLYDI 450 (509)
T ss_pred HHHHHHcChhhcchHHHHHHHHhHHH-HHcCcccceeeeec
Confidence 46678899999999999988776654 68888888999885
No 17
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=80.75 E-value=0.58 Score=46.12 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=33.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
++-..+|.+.|+.++|+...+.| +|.+-||++.|.+++.
T Consensus 672 ~~aEl~Pt~~Rgta~Gi~~~~~r-lGaiigp~i~g~L~~~ 710 (742)
T TIGR01299 672 LTVELYPSDKRATAFGFLNALCK-AAAVLGILIFGSFVGI 710 (742)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 34566899999999999999988 6788899999998764
No 18
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=79.91 E-value=1.7 Score=39.67 Aligned_cols=43 Identities=7% Similarity=-0.091 Sum_probs=35.9
Q ss_pred EEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeeccccccc
Q psy11783 71 ILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDSACLVW 114 (189)
Q Consensus 71 ~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~tCl~W 114 (189)
.--..|.+.|+.++|+...+.++ |.+.+|.++|.++|..+-.|
T Consensus 417 ~~E~~p~~~R~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 459 (502)
T TIGR00887 417 PGEVFPTRYRSTAHGISAASGKA-GAIIGQFGFLYLAQHGDPTK 459 (502)
T ss_pred hhccCchhHHHHHHHHHHHHhhh-HHHHHHHHhhhhhccccccc
Confidence 34678899999999999998886 67889999999999755444
No 19
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=78.43 E-value=0.8 Score=38.54 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=32.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...+.+|+++|+.+.|+..++..+ |..=+|++.|.+.|.
T Consensus 334 ~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 334 IASELAPKKAAGTAAGFVGFFAYL-GGILAGLPLGYLADG 372 (379)
T ss_pred HHHHhcCcchhHHHHHHHHHhhhh-hhhhhhhhHHHHHHh
Confidence 456788999999999998877654 555799999999995
No 20
>PRK03893 putative sialic acid transporter; Provisional
Probab=77.63 E-value=1.2 Score=40.05 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=30.4
Q ss_pred EeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 72 LRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 72 LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
-..+++++|+.++|+...+.. +|..=||++.|.+.|+
T Consensus 392 ~~~~~~~~~g~~~~~~~~~~~-~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 392 GGYFDTEQRAAGLGFTYNVGA-LGGALAPILGALIAQR 428 (496)
T ss_pred HhhCCHHHhhcccchhhhhhh-HHHHHHHHHHHHHhcc
Confidence 366788999999999887776 5666699999999884
No 21
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=77.45 E-value=3.1 Score=36.18 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=32.3
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+.-+.+|+++|+.++|+...+.++ |..=||.+.|++.|.
T Consensus 332 ~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~~ 370 (406)
T PRK11551 332 LAPLFYPTQVRGTGVGAAVAVGRL-GSMAGPLLAGQLLAL 370 (406)
T ss_pred HHHHHcchhhhhhhhhHHHHhhhH-HHHHHhhhHhhhhcc
Confidence 445778999999999999988765 556699999999984
No 22
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=76.06 E-value=1.3 Score=37.08 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 48 WYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 48 ~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+++..++..+..+...+....++-+.+++++|+.++|+...... +|.+=||++.|.+.|.
T Consensus 87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~~~l~~~ 147 (352)
T PF07690_consen 87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFS-LGSILGPLLGGFLISY 147 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHH-HHHHHHHHHHHHCCCH
T ss_pred HHhhhccccccccccccccccccccccchhhhhhhccccccchhh-hhhhcccchhhhhhhc
Confidence 334444444444344444455567788999999999999877544 4668889999988864
No 23
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=74.86 E-value=6.4 Score=37.87 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=29.3
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
..+-..+++++|+.++|+... ...+|..=||++.|++.+
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~-~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILES-IAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhhccCCccccHHHHHHHHH-HHHhhhHHHHHHHHHHHh
Confidence 344577899999999998554 466677788888777765
No 24
>TIGR00895 2A0115 benzoate transport.
Probab=74.62 E-value=0.94 Score=38.49 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=33.4
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeee
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVV 107 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~li 107 (189)
........+.+++++|+.++|+...+.+ +|.+=||++.|+++
T Consensus 357 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~g~~~~G~ll 398 (398)
T TIGR00895 357 SGLYALMALFYPTAIRATGVGWAIGIGR-LGAIIGPILAGYLL 398 (398)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHhHHhcC
Confidence 3444567788999999999999888766 66777999998764
No 25
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=74.34 E-value=0.81 Score=32.53 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=32.3
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 67 SMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 67 ~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
......+.+++++|+.+.|+.....+ +|.+-+|.+.|.+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIA-LGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHH-HHHHHhHHhHHHHhc
Confidence 33456688899999999999886655 667888999888876
No 26
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=74.15 E-value=2 Score=37.14 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 46 VKWYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 46 ~~~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+..|++.+++...-.++.++..+-.+-..-++|.++..+++...+ .-+|.+=||++.+.++.+
T Consensus 10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~-~~~G~~~gP~i~~~~i~~ 72 (310)
T TIGR01272 10 YVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAF-NKLGTTVAPLFGGSLILS 72 (310)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHH-hhhHHHHHHHHHHHHHhc
Confidence 667777777665545555555444444455777888999998887 456788999999999964
No 27
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=73.62 E-value=1.7 Score=35.89 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=35.9
Q ss_pred hccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 62 TSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 62 ~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
...+.......+.+|+++|+.+.|+..+..+ +|.+-+|.+.|.+.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~i~g~l~~ 326 (352)
T cd06174 281 FAFPALLTLASELAPPEARGTASGLFNTFGS-LGGALGPLLAGLLLD 326 (352)
T ss_pred ccchhHHHHHHhhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 3344455566788999999999999887654 556779999999998
No 28
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=73.33 E-value=0.99 Score=38.65 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=32.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+-+.+|+++|+.+.|+...+.. +|..-||.++|++.|+
T Consensus 352 ~~~~~~~~~~~~~~~g~~~~~~~-~g~~~g~~~~g~l~~~ 390 (405)
T TIGR00891 352 HLGEYFPTDQRAAGLGFTYQLGN-LGGALAPIIGALLAQR 390 (405)
T ss_pred HHhhhCCcchhHHHhhHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 34467899999999999888775 5667899999999996
No 29
>TIGR00893 2A0114 d-galactonate transporter.
Probab=73.10 E-value=1 Score=37.80 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=31.6
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
++....+.+.+++++|+.++|+...... +|.+=||.+.|.+.+.
T Consensus 101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~ 144 (399)
T TIGR00893 101 PGIILIVASWFPASERATAVSIFNSAQG-LGGIIGGPLVGWILIH 144 (399)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHh
Confidence 3344456677889999999998776544 4666778888877763
No 30
>PRK11663 regulatory protein UhpC; Provisional
Probab=72.51 E-value=3.3 Score=37.07 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=31.4
Q ss_pred EeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 72 LRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 72 LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
-+..++++|+.+.|+...+.. +|.+=+|.++|+++|.
T Consensus 363 ~~~~~~~~~g~~~g~~~~~~~-~g~~~~p~~~g~l~~~ 399 (434)
T PRK11663 363 AECSHKEAAGAATGFVGLFAY-LGAALSGYPLAKVLEI 399 (434)
T ss_pred HhcccHhhHHhHHHHHHHHHH-HHHHHhcccHHHHHHh
Confidence 466778899999999988766 5778899999999995
No 31
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=72.51 E-value=4.5 Score=33.85 Aligned_cols=46 Identities=13% Similarity=-0.053 Sum_probs=33.3
Q ss_pred hccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 62 TSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 62 ~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
...++....+-+.+++++|+.+.|+..... -+|.+-||++.|.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 108 FFTPAYQAMLPDLVPEEQLTQANSLSQAVR-SLFYIVGPGIGGLMYA 153 (365)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333344455668889999999999987755 4456778888888876
No 32
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=72.51 E-value=7 Score=36.59 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=55.1
Q ss_pred Hhhcccccee---eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeeccccccccccCCCccceEEeechhHHHHH
Q psy11783 60 HSTSEVGSML---LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDSACLVWESVCGEKGACNLYDTDVFRVFY 136 (189)
Q Consensus 60 ~~~~~~p~~~---i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~tCl~W~~~Cg~~g~C~~YD~~~l~~~~ 136 (189)
+++..-|.++ ..+-+||.+--+.|.|+..++.-+.|..-+-...|++.|. .-|.. .
T Consensus 357 Gf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~--~gW~g-------------------~ 415 (448)
T COG2271 357 GFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT--WGWDG-------------------G 415 (448)
T ss_pred HHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec--CCCcc-------------------h
Confidence 3344455544 5667888888899999999999999999999999999998 44432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy11783 137 HGTTGFILLLAFFVDTIVWYKAG 159 (189)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~k 159 (189)
+.+..+..+++.++.+.+|...+
T Consensus 416 Fi~~~~~a~l~~lll~~~~~~~~ 438 (448)
T COG2271 416 FIVLSIAALLAILLLLPVWNAEE 438 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 22233444556666666665444
No 33
>TIGR00901 2A0125 AmpG-related permease.
Probab=72.41 E-value=2.5 Score=36.19 Aligned_cols=51 Identities=8% Similarity=0.050 Sum_probs=36.6
Q ss_pred HHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 58 FIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 58 f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+......++....+-+.+++++|+.+.|+...... +|.+=+|.+.|.++..
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~l~~~l~~~ 145 (356)
T TIGR00901 95 FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYR-AGMLLSGSLALVLASP 145 (356)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHH-HHHHHHHHHHHHHhhh
Confidence 33333334444556788899999999999887665 4788888888887764
No 34
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=71.83 E-value=8.1 Score=30.12 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=30.6
Q ss_pred echhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCC
Q psy11783 128 DTDVFRVFYHGTTGFILLLAFFVDTIVWYKAGSINFADEETNTP 171 (189)
Q Consensus 128 D~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 171 (189)
|...-.|.+++|+++..++++++.......-|++|....+++.+
T Consensus 31 D~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~~~~k~~p 74 (125)
T PF15048_consen 31 DATPWNYSILALSFVVLVISFFLLGRSIQANRNRKMQPQEKQTP 74 (125)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhHhccccccccccccCH
Confidence 55566678899999998899888877776666555543333333
No 35
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=71.57 E-value=2.8 Score=36.47 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=29.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...+.+++++|+.+.|+......+ |..-+|.+.|++.|.
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~ 364 (399)
T PRK05122 326 EAVKRVPPQNRGAALGAYSVFLDL-SLGITGPLAGLVASW 364 (399)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 455788999999999998776655 444567788999884
No 36
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=71.24 E-value=3.6 Score=36.62 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=32.0
Q ss_pred eecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 73 RCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 73 R~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..+++++|+.+.|+...+.++ |.+-+|.++|.+.|.
T Consensus 360 ~~~~~~~~~~a~g~~~~~~~~-g~~~~p~~~g~i~~~ 395 (412)
T TIGR02332 360 QSISLQARAIAIAVINATGNI-GSALSPFLIGILKDA 395 (412)
T ss_pred cccchHHHHHHHHHHHHhhhh-hhhhhhhhccccccc
Confidence 357889999999999999885 889999999999996
No 37
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=68.77 E-value=1 Score=37.87 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=26.2
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccc-eeeeeeec
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCP-IVYGAVVD 108 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgP-i~fG~liD 108 (189)
++....+-+.+++++|+.++|+..... .+|.+=+| ++.+.+.+
T Consensus 102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 145 (379)
T TIGR00881 102 PPCGRTVTKWFSRSERGTWVSFWNCSH-NVGGGLLPPLVLFGIAE 145 (379)
T ss_pred CchHHHHHHhcCHhhheeeEeehhccc-hhHHHHHHHHHHHHHHh
Confidence 334445567788889999988766544 34455556 44444433
No 38
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=68.01 E-value=4.4 Score=34.74 Aligned_cols=42 Identities=10% Similarity=0.149 Sum_probs=31.5
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 67 SMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 67 ~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...++-+..++++|+.+.|+...... +|.+=+|++.|.+.|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~l~~~ 141 (377)
T PRK11102 100 INALMRDMFPKEEFSRMMSFVTLVMT-IAPLLAPIIGGWLLVW 141 (377)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33445566788999999999887665 5677788888888763
No 39
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=67.59 E-value=2.3 Score=38.10 Aligned_cols=39 Identities=18% Similarity=0.361 Sum_probs=29.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+-+-.++++|+.+.|+...... +|.+-+|++.|.++|.
T Consensus 155 ~~~~~~~~~~r~~~~~~~~~~~~-~g~~i~~~l~~~l~~~ 193 (465)
T TIGR00894 155 IIVKWAPPKERSRLLGMSTSGFQ-LGTFIFLPISGWLCES 193 (465)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 44567788999999999876554 4667788888887764
No 40
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=67.49 E-value=3.5 Score=35.13 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=30.8
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 67 SMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 67 ~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...++-+..++++|+.+.|+...... +|.+-||.+.|.+.|.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~l~~~ 155 (385)
T TIGR00710 114 SQALVRDIYPGEELSRIYSILMPVLA-LAPAVAPLLGGYILVW 155 (385)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33445567788999999999887665 4556788888887763
No 41
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=66.76 E-value=2.4 Score=37.65 Aligned_cols=41 Identities=17% Similarity=0.074 Sum_probs=34.2
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 68 MLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 68 ~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..+..+.+|+++|+.++|+..+ ..-+|..=||.+.|.+.|.
T Consensus 319 ~~~~~~~~p~~~~g~~~g~~~~-~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 319 ETLSASLADARARGSYMGFSRL-GLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHHhcCCcccchhhhhHHHH-HHHHHHHhcccchHHHHHH
Confidence 3455688999999999998755 5567888899999999996
No 42
>PRK09528 lacY galactoside permease; Reviewed
Probab=66.24 E-value=1.9 Score=38.14 Aligned_cols=37 Identities=19% Similarity=-0.020 Sum_probs=29.1
Q ss_pred eecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 73 RCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 73 R~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+.++++.++.+.++.+.+.+-+|.+-||++.|++.|.
T Consensus 342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~ 378 (420)
T PRK09528 342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS 378 (420)
T ss_pred HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888887765544456778999999999999995
No 43
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=64.58 E-value=8.4 Score=34.41 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=26.8
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 67 SMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 67 ~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
....+.+..++++|+.+.|+......+-+.+ +|.+.+.+++
T Consensus 139 ~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~l~~~~~~ 179 (438)
T TIGR00712 139 CGRTMVHWWSQSERGTIVSIWNCAHNIGGGI-PPLLVLLGMA 179 (438)
T ss_pred HHHHHHHhcCcccchhHHHHHHHHHHhHhHH-HHHHHHHHHH
Confidence 3344557789999999999977776654444 4444444444
No 44
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.12 E-value=7.1 Score=35.95 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=12.6
Q ss_pred CccceEEeechhHHHHHHHHHH
Q psy11783 120 EKGACNLYDTDVFRVFYHGTTG 141 (189)
Q Consensus 120 ~~g~C~~YD~~~l~~~~~~l~~ 141 (189)
....||.| |||+|+..+.
T Consensus 17 ~~kgC~YY----lryfFlF~SL 34 (442)
T PF06637_consen 17 KGKGCWYY----LRYFFLFVSL 34 (442)
T ss_pred CCCChhHH----HHHHHHHHHH
Confidence 44589998 7777766544
No 45
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=63.58 E-value=19 Score=24.89 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy11783 131 VFRVFYHGTTGFILLLAFF 149 (189)
Q Consensus 131 ~l~~~~~~l~~~~~~~~~~ 149 (189)
.+...++|+++++.++.++
T Consensus 4 gl~i~i~Gm~iVF~~L~lL 22 (79)
T PF04277_consen 4 GLQIMIIGMGIVFLVLILL 22 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555667776666555543
No 46
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=62.70 E-value=14 Score=33.01 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=24.7
Q ss_pred CCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 77 PSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 77 ~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
++.++.+.|+..+..- +|.+=+|.+.|+++|.
T Consensus 391 ~~~~g~~~g~~~~~~~-l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 391 PRFLGFIKGITGLPGF-IGGLIASTLAGNILSQ 422 (465)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHhhheeeCC
Confidence 4577888888877765 4777788999999985
No 47
>PRK11663 regulatory protein UhpC; Provisional
Probab=62.59 E-value=6.4 Score=35.19 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=32.0
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
.+...++-+.+++++|+.++|+..... -+|.+=+|++.|+++|
T Consensus 130 ~~~~~~~~~~~~~~~rg~~~~~~~~~~-~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 130 PVCAKLLTAWYSRTERGGWWAIWNTAH-NVGGALIPLVVGAIAL 172 (434)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333445557778899999999988765 4677778888888875
No 48
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=62.42 E-value=4.8 Score=38.03 Aligned_cols=43 Identities=19% Similarity=0.354 Sum_probs=32.1
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcc-cceeeeeeecc
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVP-CPIVYGAVVDS 109 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IP-gPi~fG~liD~ 109 (189)
++...+.-+.+|++.|+-.+++..++. .|.+| |.+++|.+.|.
T Consensus 326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~--~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 326 SSLNTLVQLSVPDWVRGRVFSIYQMVF--FGGMPLGSLLWGFLADH 369 (524)
T ss_pred HHHHHHHHHhCCHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 444556679999999999999987655 34444 67888888884
No 49
>PRK09952 shikimate transporter; Provisional
Probab=61.72 E-value=1.9 Score=38.72 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=34.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..-+.+|.+.|+.+.|+.+.+.+.+|..-+|.+.|+++|.
T Consensus 367 ~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~ 406 (438)
T PRK09952 367 MFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTY 406 (438)
T ss_pred HHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3447789999999999998888888888899999999985
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=61.51 E-value=6 Score=34.36 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=29.1
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 68 MLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 68 ~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
...+-+..++++|+.++|+......+ |.+-+|++.|.+.|
T Consensus 113 ~~~i~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~i~~~l~~ 152 (392)
T PRK10473 113 FAILRDTLDDRRRAKVLSLLNGITCI-IPVLAPVLGHLIML 152 (392)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 33445678899999999998876654 45567888777665
No 51
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=60.23 E-value=1.8 Score=36.42 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=32.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+-+.+++++|+.+.|+...... +|..-+|++.|.+.|.
T Consensus 319 ~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~ 357 (377)
T TIGR00890 319 LVSDIFGPANSAANYGFLYTAKA-VAGIFGGLIASHALTE 357 (377)
T ss_pred HHHHHhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 34477899999999999987765 6788999999999873
No 52
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=60.21 E-value=9.7 Score=38.45 Aligned_cols=42 Identities=10% Similarity=-0.007 Sum_probs=33.2
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 66 GSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 66 p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
....++-+.+++++|+.|+|+..+...+ |.+=||++.|++++
T Consensus 128 ~~~a~l~~~~~~~~~~~a~~~~~~~~~i-g~~igp~l~g~l~~ 169 (1140)
T PRK06814 128 IKYSILPDHLNKDELLGANALVEAGTFI-AILLGTIIGGLATI 169 (1140)
T ss_pred HHHHhhHhhcCccccchhhHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 3444556888999999999998776655 77888999999876
No 53
>TIGR00898 2A0119 cation transport protein.
Probab=60.04 E-value=11 Score=33.96 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=29.8
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeee
Q psy11783 68 MLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYG 104 (189)
Q Consensus 68 ~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG 104 (189)
....-+..|++.|+.++|+..++.| +|.+-+|.+.|
T Consensus 432 ~~~~~e~~p~~~r~~~~g~~~~~~~-ig~~i~p~i~~ 467 (505)
T TIGR00898 432 YLYTAELYPTVVRNLGVGVCSTMAR-VGSIISPFLVY 467 (505)
T ss_pred HHHhcccccHHHHhhhHhHHHHHHH-HHHHHHhHHHH
Confidence 3455688899999999999998877 57788999888
No 54
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=59.98 E-value=10 Score=37.96 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=33.6
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 66 GSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 66 p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+...++-+.+++++|+.++|+..+... +|.+=||++.|++++.
T Consensus 123 ~~~~~i~~~~~~~~r~~~~~~~~~~~~-ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 123 AKYGIIPELVGKENLSRANGLLEAFTI-VAILAGTALFSFLFES 165 (1146)
T ss_pred HHHhhhHHhcCcccchhhhhHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 334456688899999999999877664 5778889998888873
No 55
>PRK03699 putative transporter; Provisional
Probab=59.94 E-value=18 Score=31.60 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=27.7
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 68 MLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 68 ~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
...+.+..++++|+.++++......+ |.+=+|.+.|++++
T Consensus 117 ~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~ 156 (394)
T PRK03699 117 TFLITHVYEGKQRGSRLLFTDSFFSM-AGMIFPIIAAYLLA 156 (394)
T ss_pred hHHhhhhcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 34556778888999999887665543 44456777777765
No 56
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=58.81 E-value=18 Score=27.98 Aligned_cols=9 Identities=33% Similarity=0.390 Sum_probs=0.0
Q ss_pred hhhccCCCC
Q psy11783 178 AMTEKIKPE 186 (189)
Q Consensus 178 ~~~~~~~~~ 186 (189)
..+|..++|
T Consensus 113 ~~~~~~~~~ 121 (122)
T PF01102_consen 113 SSVEIENPE 121 (122)
T ss_dssp ---------
T ss_pred ceeeecCCC
Confidence 334444444
No 57
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=58.63 E-value=12 Score=34.08 Aligned_cols=36 Identities=17% Similarity=-0.011 Sum_probs=30.1
Q ss_pred eecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 73 RCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 73 R~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...|++.|+.++|+..-+.++.| +-+|.+.|++.|.
T Consensus 369 ~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~ 404 (490)
T PRK10642 369 AMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVES 404 (490)
T ss_pred HHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 35799999999999777788775 6799999999875
No 58
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=58.34 E-value=6.2 Score=34.12 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=30.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...+.+++++|+.+.|+...+ +-+|.+=||++.|.+.|.
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~-~~~g~~~gp~~~G~l~~~ 373 (408)
T PRK09874 335 LLVYNSSNQIAGRIFSYNQSF-RDIGNVTGPLMGAAISAN 373 (408)
T ss_pred HHHHhCCcccceeeehHHHHH-HHHHHHhhHHHHHHHHhh
Confidence 344677888889999987766 456777799999998874
No 59
>PRK15075 citrate-proton symporter; Provisional
Probab=57.63 E-value=2.4 Score=37.83 Aligned_cols=40 Identities=5% Similarity=-0.037 Sum_probs=33.3
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.....+|+++|+.++|+...+.+.++..-+|.+.|+++|.
T Consensus 355 ~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 355 ALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred HHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3457789999999999988888887455599999999996
No 60
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=57.52 E-value=13 Score=32.68 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=22.3
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 67 SMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 67 ~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
......+.+..+.++...|++..+. -+|.+-++.+.|.+.|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~G~l~~~ 365 (402)
T PRK11902 324 FVALLMALCNRSFSATQYALLSALA-SVGRVYVGPTSGYLVEA 365 (402)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3344445555555555556544443 33443334468888875
No 61
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=57.04 E-value=20 Score=29.17 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=22.8
Q ss_pred EeechhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccCCCCCCCCchhhhhhh
Q psy11783 126 LYDTDVFRVFYHGTTGFILLLAFFVDTIVWYKAGSI---NFADEETNTPEDDEMQAM 179 (189)
Q Consensus 126 ~YD~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k~~---~~~~~~~~~~~~~~~~~~ 179 (189)
..|...+.+.+..+..+..++.+.|.+=++...|+. +.|+--....+..|...+
T Consensus 88 ~~d~~~l~R~~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~~~Em~pL 144 (163)
T PF06679_consen 88 SPDSPMLKRALYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTRAENVEMAPL 144 (163)
T ss_pred cCCccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccceeecccCCCcccceeccc
Confidence 556665665554433322222222223333333322 345544444444555544
No 62
>PRK12307 putative sialic acid transporter; Provisional
Probab=56.33 E-value=1.9 Score=37.82 Aligned_cols=38 Identities=8% Similarity=-0.032 Sum_probs=32.9
Q ss_pred EEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 71 ILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 71 ~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+-+.+|++.|+.++|+...+.++ |.+.||++.|++.|.
T Consensus 346 ~~~~~p~~~~g~~~g~~~~~~~~-~~~~gp~~~g~l~~~ 383 (426)
T PRK12307 346 LYDYFPLEVRGLGTGLIYNLAAT-SGTFNSMAATWLGIT 383 (426)
T ss_pred HHHhCcHHHHhhhhhHHHHHHhH-HHHHHHHHHHHHHHc
Confidence 35778899999999999888877 778899999999985
No 63
>TIGR00898 2A0119 cation transport protein.
Probab=55.59 E-value=8.6 Score=34.70 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=27.3
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeee
Q psy11783 67 SMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAV 106 (189)
Q Consensus 67 ~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~l 106 (189)
...++.+.+++++|+.+.++..+ .-.+|.+=+|++.+.+
T Consensus 201 ~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 201 AVVLNTEFLPKKQRAIVGTLIQV-FFSLGLVLLPLVAYFI 239 (505)
T ss_pred HHHHhheecChhhhHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 44466789999999999888744 4456666677665443
No 64
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=55.20 E-value=6.6 Score=34.71 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=33.6
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 68 MLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 68 ~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..++-+.+++++|+.|.|+.... ..+|.+=||++.|.++|.
T Consensus 110 ~a~i~~~~~~~~~~~a~~~~~~~-~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 110 YGILTELLPGEKLVKANGWMEGS-TIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33556889999999999997744 678888999999999883
No 65
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=55.06 E-value=11 Score=33.98 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=25.7
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHhhcCccccee
Q psy11783 66 GSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIV 102 (189)
Q Consensus 66 p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~ 102 (189)
+......+..++++|+.++|+......+-+.+-+|++
T Consensus 140 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 176 (452)
T PRK11273 140 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF 176 (452)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3344555778899999999997666666555656654
No 66
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=54.57 E-value=6.2 Score=34.61 Aligned_cols=32 Identities=9% Similarity=0.221 Sum_probs=24.9
Q ss_pred CCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 77 PSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 77 ~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
++.++.+.|+..++. -+|..=||.+.|.++|.
T Consensus 349 ~~~~G~~~~~~~~~~-~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 349 VRAEGLVYSVRTFVR-KLGQALAGFLVGLILGI 380 (437)
T ss_pred ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 455678888888764 55777799999999986
No 67
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=54.31 E-value=11 Score=33.07 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=29.0
Q ss_pred eecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 73 RCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 73 R~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..+++++|+.+.|+..+...+- .+-||.+.|.++|.
T Consensus 341 ~~~~~~~~g~~~g~~~~~~~lg-~~~gp~i~g~l~~~ 376 (402)
T TIGR00897 341 PTLAPKHKGAAMSVLNLSAGLS-AFLAPAIAVLFIGF 376 (402)
T ss_pred HhhCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 4467889999999987777554 56699999999984
No 68
>PRK03545 putative arabinose transporter; Provisional
Probab=54.27 E-value=11 Score=32.75 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=26.2
Q ss_pred cCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 75 VDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 75 V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..++.|+.+.|+...+.+ +|..-||++.|++.|.
T Consensus 322 ~~~~~~~~~~g~~~~~~~-~g~~~G~~~~G~~~~~ 355 (390)
T PRK03545 322 LAPDATDVAMALFSGIFN-IGIGAGALLGNQVSLH 355 (390)
T ss_pred hCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 456789999998877754 4666699999998874
No 69
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=53.65 E-value=22 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q psy11783 136 YHGTTGFILLLAFFVDTIVWYKAGSINFADEE 167 (189)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 167 (189)
+.++..++.++++++.+++|...|+.++....
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 44555666678888999999877765554444
No 70
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=53.31 E-value=11 Score=33.36 Aligned_cols=39 Identities=23% Similarity=0.172 Sum_probs=30.9
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
.++-+.+++++|+.++|+.+.... +|.+=||++.|.+.+
T Consensus 131 ~~i~~~~~~~~~~~a~~~~~~~~~-~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 131 SLTMRLVPPRTVPKALSVIFGAVS-IALVIAAPLGSFLGE 169 (394)
T ss_pred HHHHHHcCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 345688999999999999887654 577778888888766
No 71
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=51.95 E-value=2.5 Score=37.55 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=36.7
Q ss_pred cccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 64 EVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 64 ~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..|........+++++|+.+.|+..++ |.+|..=||.++|.+.|+
T Consensus 366 ~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 366 FMPLTTIALSGLPPHKIARGSSLSNFT-RQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHhcCCHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345555667888999999999998776 678888899999999985
No 72
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=51.91 E-value=8.3 Score=35.96 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=35.4
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeeccc
Q psy11783 67 SMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDSA 110 (189)
Q Consensus 67 ~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~t 110 (189)
+-...-|.+|+++.+--.|+..+.-|.. .+=||+++|.+.|.+
T Consensus 401 sRs~~~~LiP~g~e~efFgly~i~gk~s-s~lGPll~g~i~~~t 443 (477)
T PF11700_consen 401 SRSLFSRLIPPGREAEFFGLYAITGKAS-SWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 3446678999999999999988777776 466899999999974
No 73
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=50.80 E-value=77 Score=26.40 Aligned_cols=81 Identities=12% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCch-hHHHHHHHHHHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeeccccc-ccc--cc
Q psy11783 42 DCVS-VKWYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDSACL-VWE--SV 117 (189)
Q Consensus 42 ~C~~-~~~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~tCl-~W~--~~ 117 (189)
.|+- .++|.+++++..++. +..+|.=+.-.|..... +.|+ +|+ ++
T Consensus 2 ~~~ig~i~y~vlqfiAflfv-lvgTPidmfr~~~~~~~------------------------------~~C~TlWG~K~~ 50 (192)
T PTZ00201 2 ACSIPLVVYVVVQFVAFLLV-LVGTPIDMFRAHNRPGV------------------------------TPCLTLWGFKLE 50 (192)
T ss_pred CCchhhHHHHHHHHHHHHHH-HHcCCHHHhCcCCCCCC------------------------------CeEEEeeeccCC
Q ss_pred CCCccceEEeech--hH------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11783 118 CGEKGACNLYDTD--VF------RVFYHGTTGFILLLAFFVDTIVWYK 157 (189)
Q Consensus 118 Cg~~g~C~~YD~~--~l------~~~~~~l~~~~~~~~~~~~~~~~~~ 157 (189)
|... -||.+ .+ |+..+-.+..+.+++++.+.++..+
T Consensus 51 C~~~----~y~~~~~~~w~~C~~rr~~Fr~aqAfaIISI~v~~aA~vl 94 (192)
T PTZ00201 51 CKST----EYDVTVDMLWANCPARILQFRVAQALAVISILVYGAAFVL 94 (192)
T ss_pred CCCC----CcCCchHhHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 74
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=50.33 E-value=3.1 Score=37.15 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=33.4
Q ss_pred EEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 71 ILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 71 ~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..+..++++|+.+.|+...+..+.|.+-||+++|.+.|.
T Consensus 370 ~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~ 408 (438)
T TIGR00712 370 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 408 (438)
T ss_pred HHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence 346678899999999998887777778999999999994
No 75
>PRK12382 putative transporter; Provisional
Probab=48.21 E-value=2.9 Score=36.36 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=32.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...+..++++|+.+.|+...... +|..=||++.|++.|.
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~-~g~~ig~~~~g~l~~~ 364 (392)
T PRK12382 326 EVVKRVPSQVRGTALGGYAAFQD-IAYGVSGPLAGMLATS 364 (392)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44577889999999999887755 4777799999999984
No 76
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=47.78 E-value=16 Score=33.43 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=28.7
Q ss_pred eec-CCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 73 RCV-DPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 73 R~V-~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+.. ++++|+.++|+...... +|.+=||++.|+++|.
T Consensus 121 ~~~~~~~~r~~~~g~~~~~~~-~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 121 ATFTEEKQRNMALGVWAAVGS-GGAAFGPLVGGILLEH 157 (495)
T ss_pred HHcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Confidence 544 67899999999877554 4788899999999874
No 77
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=47.75 E-value=25 Score=32.99 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhhccccceeeEEeecCCCCch--HHHHHHHHHHHhhcCcccceeeee
Q psy11783 48 WYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKA--MALGLIQFAIGLFGNVPCPIVYGA 105 (189)
Q Consensus 48 ~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks--~AlG~~~~~~rllg~IPgPi~fG~ 105 (189)
.+++.+.+.-+...+.+.|...++-..++++||. .|.+++..+. -+|.+=|+.+.|.
T Consensus 116 ~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~-~lG~ilg~~~g~~ 174 (477)
T TIGR01301 116 VFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM-AIGNVLGYAAGAY 174 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4444454555566677788888888999998764 6777666555 3466666665553
No 78
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=47.63 E-value=16 Score=31.59 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=30.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+.+.+++++|+.++|+.... ..+|.+=||++.|.++|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~l~~~ 168 (408)
T PRK09874 130 LIATQVPRNKSGWALGTLSTG-GVSGALLGPLAGGLLADS 168 (408)
T ss_pred HHHHhcCHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 445778899999999988665 456778889999988773
No 79
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=47.31 E-value=26 Score=29.98 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=32.4
Q ss_pred cccc--cCCCccceEEeechhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy11783 113 VWES--VCGEKGACNLYDTDVFRVFYHGTTGFILLLAFFVDTIVWYKAGSIN 162 (189)
Q Consensus 113 ~W~~--~Cg~~g~C~~YD~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ 162 (189)
+|+. +|... -.|+..+...++++++++.++-++||+.++...++++
T Consensus 171 lWs~~~~C~~~----~~~~~~~~~~~i~v~~~vl~lpv~FY~~s~~~~~~~~ 218 (237)
T PF09777_consen 171 LWSKTFNCSVP----CKDEVPSETAVIAVSVFVLFLPVLFYLSSYLHSERKK 218 (237)
T ss_pred HhcccccCCCc----ccccccchhHHHHHHHHHHHHHHHHHHhheeeecccc
Confidence 7986 57432 2345556666777777777888899999998887655
No 80
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=46.53 E-value=39 Score=25.12 Aligned_cols=13 Identities=46% Similarity=1.316 Sum_probs=9.5
Q ss_pred cccccccCCCccce
Q psy11783 111 CLVWESVCGEKGAC 124 (189)
Q Consensus 111 Cl~W~~~Cg~~g~C 124 (189)
| -++.-||+.|=|
T Consensus 3 C-~~~~CC~~~~CC 15 (102)
T PF11669_consen 3 C-EYGYCCGESGCC 15 (102)
T ss_pred C-CCCceeCCCCcc
Confidence 5 455668988888
No 81
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=46.49 E-value=23 Score=32.72 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=24.5
Q ss_pred eEEeecCCCC--chHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 70 LILRCVDPSD--KAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 70 i~LR~V~~~~--ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
+.-+..++++ |.-+.++..+. .-+|.+-||++.|++.|
T Consensus 136 l~~~~f~~~~~~~~~~~~~~~~~-~~iG~~~gp~i~g~l~~ 175 (500)
T PRK09584 136 LLSTCYEKDDPRLDGAFTMYYMS-INIGSFFSMLATPWLAA 175 (500)
T ss_pred HHHHhcCCCchhhhhcchHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3445555444 33456655544 45588889999999987
No 82
>PRK11043 putative transporter; Provisional
Probab=45.90 E-value=31 Score=30.02 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=26.1
Q ss_pred EEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 71 ILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 71 ~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
.++.+ +++|+.+.|+...+. ..+..-+|.+.|.++|
T Consensus 321 ~~~~~-~~~~g~~~g~~~~~~-~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 321 ALRPF-PQATGKAAALQNTLQ-LGLCFLASLLVSALIS 356 (401)
T ss_pred HhhhC-cccChHHHHHHHHHH-HHHHHHHHHHHHHccC
Confidence 34555 468999999998864 5555566777788877
No 83
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=45.09 E-value=7 Score=34.72 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=33.7
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+.....+.+.+++++|+.++|+.... ..+|.+=||++.|++.|.
T Consensus 109 ~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~~~ 152 (485)
T TIGR00711 109 PLSFSTLLNIYPPEKRGRAMAIWGLT-VLVAPALGPTLGGWIIEN 152 (485)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHhhhhhccHhHhccC
Confidence 33445667888999999999986655 455677889999999885
No 84
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=44.62 E-value=10 Score=32.40 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=31.5
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 68 MLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 68 ~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...+.+.+++++|+.+.|+..... .+|.+-+|.+.+.+++.
T Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 122 AAYVIESWPKHLRNKASGLLISGY-AVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 344567889999999999876654 45778888888888764
No 85
>KOG3762|consensus
Probab=43.81 E-value=68 Score=31.32 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=32.3
Q ss_pred ecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 74 CVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 74 ~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..||+.|+.|.|+...+-.=+|-=-|.+|.|.++.+
T Consensus 487 vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 487 VAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER 522 (618)
T ss_pred hCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence 468999999999999999999999999999998876
No 86
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=43.61 E-value=15 Score=30.30 Aligned_cols=44 Identities=25% Similarity=0.415 Sum_probs=33.1
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+.....-+.+++++|+.+.|+..... -+|.+-||++.|.+.|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 149 (352)
T cd06174 106 PAAAALIAEWFPPKERGRALGLFSAGF-GLGALLGPLLGGLLAES 149 (352)
T ss_pred HhHHHHHHHhCCccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333345557778889999999977555 55778899999998874
No 87
>PRK10504 putative transporter; Provisional
Probab=43.23 E-value=15 Score=32.73 Aligned_cols=43 Identities=12% Similarity=-0.004 Sum_probs=33.4
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 66 GSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 66 p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+......+.+++++++.+.|+. .+.+-+|..=||.+.|.+.|.
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~-~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLL-SMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455788999999999987 555566888899999999885
No 88
>PRK11010 ampG muropeptide transporter; Validated
Probab=42.48 E-value=28 Score=31.99 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=31.4
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+........++++.++.+.|+...+. -+|.+-+|.+.|++.|.
T Consensus 335 ~~~~a~~~~l~~~~~~~t~~gl~~s~~-~lg~~~~~~~~G~l~~~ 378 (491)
T PRK11010 335 AAFVALLMTLCNKSFSATQFALLSALS-AVGRVYVGPVAGWFVEA 378 (491)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 334445567788888888888887776 44555555679999994
No 89
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=41.54 E-value=23 Score=32.06 Aligned_cols=44 Identities=25% Similarity=0.197 Sum_probs=37.1
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 66 GSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 66 p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.....+=|.+|++.|+.+.|+-..+.-=+|.+=|.++.|++.|+
T Consensus 321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344557789999999999999988889999999999999995
No 90
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=41.35 E-value=31 Score=31.40 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=16.5
Q ss_pred cCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 75 VDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 75 V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
+.+++++.+.|+..... .+ ||++.|.+.|
T Consensus 376 ~~~~~~g~~~g~~~~~g-~l----g~~i~~~l~~ 404 (476)
T PLN00028 376 VSRRSLGVISGLTGAGG-NV----GAVLTQLLFF 404 (476)
T ss_pred cChhhchhhhhhhhccc-cH----HHHHHHHHHH
Confidence 45678888888864422 23 4444444444
No 91
>PRK10489 enterobactin exporter EntS; Provisional
Probab=40.94 E-value=10 Score=33.41 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=34.5
Q ss_pred ccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 63 SEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 63 ~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...+....+-+.+++++|..+.|+..+ ..-+|.+=||.+.|.++|.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~l~g~l~~~ 172 (417)
T PRK10489 127 GVTALLAATPALVGRENLMQAGAITML-TVRLGSVISPALGGLLIAA 172 (417)
T ss_pred HHHHHhhhhhhccCHHHHHHHHHHHHH-HHhHHHHhHHHHHHHHHHH
Confidence 334445566788999999999998765 4556777899999998874
No 92
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=40.62 E-value=37 Score=32.08 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=34.1
Q ss_pred ccccceeeEE-eecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 63 SEVGSMLLIL-RCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 63 ~~~p~~~i~L-R~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
...|....++ +.|++++-.-|.++..+...+- .+=||.+.|.++.
T Consensus 119 ~~~PA~~A~ip~lV~~~~L~~A~al~s~~~nia-r~iGPalgG~Lva 164 (524)
T PF05977_consen 119 FFNPAWQAIIPELVPKEDLPAANALNSISFNIA-RIIGPALGGILVA 164 (524)
T ss_pred HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH-HhccchHHHHHHH
Confidence 3355555555 7899999999999988877654 4448999999886
No 93
>KOG2615|consensus
Probab=38.57 E-value=25 Score=32.94 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=43.7
Q ss_pred HHHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeeccccccccccCCCccceE
Q psy11783 54 SFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDSACLVWESVCGEKGACN 125 (189)
Q Consensus 54 ~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~tCl~W~~~Cg~~g~C~ 125 (189)
.+.+|.++...+-.+.+....++++||+.+.|+...+.-+ +-.=||++.|.+.- |.. ++..|+
T Consensus 360 ~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~al-aRaiGPlv~g~i~~-----Ws~---~~~~a~ 422 (451)
T KOG2615|consen 360 TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGAL-ARAIGPLVSGVIFS-----WSQ---GAQPAY 422 (451)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHH-HHHhhhhhhheeEE-----Eec---CCCcee
Confidence 3445555555555666778999999999999998766543 34457998888875 764 244554
No 94
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=38.36 E-value=20 Score=36.24 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=36.9
Q ss_pred HHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 57 VFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 57 ~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
.+..++..+|...++-+.+++++|+.++|+..++.. +|..=||++.|.+.|
T Consensus 345 g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~-~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 345 AAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA-AFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344445556666778899999999999999987754 444455666788765
No 95
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=38.17 E-value=79 Score=22.21 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=24.6
Q ss_pred CCCccceEEeechhHHHHHHHHHHH--HHHHHHHHHHHHHhhhcc
Q psy11783 118 CGEKGACNLYDTDVFRVFYHGTTGF--ILLLAFFVDTIVWYKAGS 160 (189)
Q Consensus 118 Cg~~g~C~~YD~~~l~~~~~~l~~~--~~~~~~~~~~~~~~~~k~ 160 (189)
||.-+.=+=-|.+..|..+..+.+. .-..+++.|+++|+.+.+
T Consensus 18 cgGla~yf~id~tlVRll~vl~~~~~~~~~~~ii~Yiia~~imP~ 62 (70)
T COG1983 18 CGGLAEYFGIDPTLVRLLFVLLTLFGGLTGFGIIAYIIAALIMPS 62 (70)
T ss_pred ehhHHHHhCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHCCC
Confidence 4433333334556667655554443 234567889999988754
No 96
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=38.16 E-value=1.2e+02 Score=21.66 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy11783 131 VFRVFYHGTTGFILLLAFFVD 151 (189)
Q Consensus 131 ~l~~~~~~l~~~~~~~~~~~~ 151 (189)
.+....+|.++++.++.++.+
T Consensus 7 ~~~l~v~GM~~VF~fL~lLi~ 27 (82)
T TIGR01195 7 GATLTVLGMGIVFLFLSLLIY 27 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556676666666655433
No 97
>PF13347 MFS_2: MFS/sugar transport protein
Probab=37.84 E-value=70 Score=28.36 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=22.5
Q ss_pred HHHHHhhccccceeeEEeecC-CCCchHHHHHHHHHH
Q psy11783 56 FVFIHSTSEVGSMLLILRCVD-PSDKAMALGLIQFAI 91 (189)
Q Consensus 56 ~~f~~~~~~~p~~~i~LR~V~-~~~ks~AlG~~~~~~ 91 (189)
..+......+|.....-+..+ ++||....+...++.
T Consensus 113 ~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~ 149 (428)
T PF13347_consen 113 FDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFS 149 (428)
T ss_pred HHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHH
Confidence 344445566776555555554 678988777776643
No 98
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=36.70 E-value=58 Score=21.38 Aligned_cols=9 Identities=0% Similarity=-0.182 Sum_probs=3.6
Q ss_pred HHHHHhhhc
Q psy11783 151 DTIVWYKAG 159 (189)
Q Consensus 151 ~~~~~~~~k 159 (189)
.+.++-..|
T Consensus 17 g~~I~~~~K 25 (50)
T PF12606_consen 17 GLSICTTLK 25 (50)
T ss_pred HHHHHHHhh
Confidence 333443444
No 99
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=36.67 E-value=8.4 Score=33.56 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=33.1
Q ss_pred cceeeEEeecCC-CCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 66 GSMLLILRCVDP-SDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 66 p~~~i~LR~V~~-~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+.....+|..++ ++++.+.|+...+. -+|.+-||++.|++.|.
T Consensus 323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~lg~~~g~~~~G~l~~~ 366 (390)
T TIGR02718 323 AIYTAFMRFAGDGDQAGTDVTAVQSTR-DLGELIASSIAGYLTDR 366 (390)
T ss_pred HHHHHHHHHhCcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333344566665 88899999988877 66888899999999985
No 100
>PRK13751 putative mercuric transport protein; Provisional
Probab=36.09 E-value=73 Score=24.51 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=25.1
Q ss_pred ccCCCccceEEeechhHHHHHHHHHHHHHHHHHHH
Q psy11783 116 SVCGEKGACNLYDTDVFRVFYHGTTGFILLLAFFV 150 (189)
Q Consensus 116 ~~Cg~~g~C~~YD~~~l~~~~~~l~~~~~~~~~~~ 150 (189)
+.|.....|-.+..++..+.++-++.++.++.+.+
T Consensus 74 ~~C~~g~~Ca~p~~rk~~k~~~Wi~~vlvl~~L~f 108 (116)
T PRK13751 74 AACKPGEVCAIPQVRATYKLIFWIVAALVLVALGF 108 (116)
T ss_pred cccCCCCccCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 56888889999998888777766665555444443
No 101
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=35.46 E-value=34 Score=31.71 Aligned_cols=37 Identities=11% Similarity=-0.012 Sum_probs=26.1
Q ss_pred hccccceeeEEeecCCCCchHHHHHHHHHHHhhcCccc
Q psy11783 62 TSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPC 99 (189)
Q Consensus 62 ~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPg 99 (189)
+..++.+..+.+.+|+++++.+.|+..+... +|..-|
T Consensus 395 ~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~-ig~~lg 431 (489)
T PRK10207 395 FISALGLAMIAALVPQHLMGFILGMWFLTQA-AAFLLG 431 (489)
T ss_pred HHhHHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3445556788899999999999999665443 444433
No 102
>KOG4686|consensus
Probab=35.41 E-value=71 Score=29.30 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=27.3
Q ss_pred eecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 73 RCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 73 R~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
-.||++|-..|-|+..-+..+ |.---||+.|.+.|+
T Consensus 379 ~~vpE~qLGTaygf~qsIqNL-gla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 379 SLVPEEQLGTAYGFIQSIQNL-GLAFIPIIAGFIADG 414 (459)
T ss_pred hhCCHHHhcchHHHHHHHHhh-hhhHHhhhhheeecC
Confidence 358899988888887766553 444557999999995
No 103
>PRK10091 MFS transport protein AraJ; Provisional
Probab=35.38 E-value=26 Score=30.44 Aligned_cols=30 Identities=7% Similarity=-0.117 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 79 DKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 79 ~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.|..+.++. ....-+|..-||.+.|.++|.
T Consensus 321 ~~~~~~~~~-~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 321 GELLGAAGG-QIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred chHHHHHHH-HHHHHHHHHHHHHHhHHHHHc
Confidence 344554443 345678999999999999995
No 104
>PRK10054 putative transporter; Provisional
Probab=34.93 E-value=8.5 Score=34.05 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.5
Q ss_pred EEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 71 ILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 71 ~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+-+.+|++.|+.+.|.+. ...+|..-||++.|++.|+
T Consensus 323 ~~~~~p~~~~~~~~~~~~--~~~~G~~~Gp~~~G~l~~~ 359 (395)
T PRK10054 323 IDHIAPPGMKASYFSAQS--LGWLGAAINPLVSGVILTT 359 (395)
T ss_pred HHHhCCcccceehHhHHH--HHHHHHHHHHHHHHHHHHH
Confidence 336778899998888665 4447999999999999994
No 105
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=34.77 E-value=90 Score=21.00 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=21.1
Q ss_pred eechhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11783 127 YDTDVFRVFYHGTTGFILLLAFFVDTIVWYKAG 159 (189)
Q Consensus 127 YD~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k 159 (189)
-|....|..+..+.++.-. ++++|+++|....
T Consensus 26 id~~~vRl~~v~l~~~~~~-~~l~Y~~~w~~lP 57 (61)
T PF04024_consen 26 IDPTLVRLIFVVLTFFTGG-GILLYLILWLLLP 57 (61)
T ss_pred cCHHHHHHHHHHHHHHHhH-HHHHHHHHHHHcC
Confidence 3555667666665543333 7888999998775
No 106
>PRK03545 putative arabinose transporter; Provisional
Probab=34.59 E-value=31 Score=29.99 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=28.5
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
..+.|..++++|+.++|+..... .+|.+-||.+.|.+.+
T Consensus 120 ~~i~~~~~~~~r~~~~g~~~~~~-~~g~~ig~~l~~~l~~ 158 (390)
T PRK03545 120 SLAIRVAPAGKKAQALSLLATGT-ALAMVLGLPLGRVIGQ 158 (390)
T ss_pred HHHHHhCChhhhhhHHHHHHHHH-HHHHHHHhhHHHHHHH
Confidence 34567889999999999876544 3466677777777664
No 107
>KOG4193|consensus
Probab=34.56 E-value=37 Score=33.09 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=31.1
Q ss_pred CccceEEeechhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccCCCC
Q psy11783 120 EKGACNLYDTDVFRVFYHGTTGFILLLAFFVDTIVW-YKAGSINFADEE 167 (189)
Q Consensus 120 ~~g~C~~YD~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~k~~~~~~~~ 167 (189)
..+.||+++...+-+.|.|-...+.++-+++++++. ...+++....++
T Consensus 458 ~~~~CWl~~~~~~~~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~ 506 (610)
T KOG4193|consen 458 TPRVCWLDTQNGFIWSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPI 506 (610)
T ss_pred cCCceEEecCCceEEEEehHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence 345699999999888878876666667666554444 444444444333
No 108
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.28 E-value=59 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=14.2
Q ss_pred HHHHHHHhhhcccccCCCCCCC--Cchhhhhhh
Q psy11783 149 FVDTIVWYKAGSINFADEETNT--PEDDEMQAM 179 (189)
Q Consensus 149 ~~~~~~~~~~k~~~~~~~~~~~--~~~~~~~~~ 179 (189)
++.++..++.||.+.+.+.+.+ -++.|+++.
T Consensus 246 l~Gii~~~~~r~~~~~~~~p~~~~~d~~~~~~~ 278 (281)
T PF12768_consen 246 LIGIILAYIRRRRQGYVPAPTSPRIDEDEMMQR 278 (281)
T ss_pred HHHHHHHHHHhhhccCcCCCcccccCccccccc
Confidence 3444444555554555544443 223444443
No 109
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=58 Score=22.19 Aligned_cols=19 Identities=5% Similarity=0.291 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q psy11783 142 FILLLAFFVDTIVWYKAGS 160 (189)
Q Consensus 142 ~~~~~~~~~~~~~~~~~k~ 160 (189)
.+..++++|..++|+.+++
T Consensus 14 ~t~~~~l~fiavi~~ayr~ 32 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYRP 32 (60)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4445666777777777664
No 110
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=33.28 E-value=79 Score=28.04 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=19.8
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhc
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFG 95 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg 95 (189)
..+-+..|+++|+.+.|+...+.++-+
T Consensus 387 ~~~~e~~p~~~r~~~~g~~~~~~~~g~ 413 (479)
T PRK10077 387 VLLSEIFPNAIRGKALAIAVAAQWIAN 413 (479)
T ss_pred HHhHhhCChhHHHHHHHHHHHHHHHHH
Confidence 344566788999999999887665443
No 111
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=33.02 E-value=11 Score=33.48 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=28.8
Q ss_pred EeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 72 LRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 72 LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
-...|++.|+.+.|+...+.++++..-+|.+.| ++|+
T Consensus 362 ~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~ 398 (432)
T PRK10406 362 AEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKS 398 (432)
T ss_pred HHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHH
Confidence 367889999999999999988763334888778 5564
No 112
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=32.87 E-value=28 Score=31.95 Aligned_cols=108 Identities=7% Similarity=0.073 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhccccceeeEEeecCCCC---chHHHHHHHHHHHhhcCcccceeeeeeeccccccccccCCCcc
Q psy11783 46 VKWYIILFSFFVFIHSTSEVGSMLLILRCVDPSD---KAMALGLIQFAIGLFGNVPCPIVYGAVVDSACLVWESVCGEKG 122 (189)
Q Consensus 46 ~~~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~---ks~AlG~~~~~~rllg~IPgPi~fG~liD~tCl~W~~~Cg~~g 122 (189)
...+.+..++..+..+..........-+..++++ |+.+.++...... +|.+-||++.|++.|.
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~n-iG~~ig~~l~g~l~~~------------- 167 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSIN-IGSFISPLLAGVIAEN------------- 167 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHH-HHHHHHHHHHHHHHHh-------------
Q ss_pred ceEEeechhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCchhh
Q psy11783 123 ACNLYDTDVFRVFYHGTTGFILLLAFFVDTIVWYKAGSINFADEETNTPEDDE 175 (189)
Q Consensus 123 ~C~~YD~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 175 (189)
...+..|.... ...+++++.++.....+++....++...+.+++.
T Consensus 168 -------~g~~~~f~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (475)
T TIGR00924 168 -------YGYHVGFNLAA-VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTY 212 (475)
T ss_pred -------cChHHHHHHHH-HHHHHHHHHHHHcccccccCCCCCCCcchhhhhh
No 113
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=32.72 E-value=8.5 Score=33.89 Aligned_cols=40 Identities=8% Similarity=-0.025 Sum_probs=28.9
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+.+.+++++|+.+.|+......+=..+=||++.|.++|.
T Consensus 129 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~ 168 (402)
T TIGR00897 129 WVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA 168 (402)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4557789999999999988765442224467777877763
No 114
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=32.24 E-value=31 Score=30.49 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=31.4
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 66 GSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 66 p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
+....+.+.+++++|+.++|+.... .-+|.+-||.+.|.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~-~~~g~~ig~~l~g~l~~ 160 (400)
T PRK11646 119 PRTALVIKLIRPHQRGRFFSLLMMQ-DSAGAVIGALLGSWLLQ 160 (400)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3344556788999999999988774 44566778999998873
No 115
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=32.20 E-value=75 Score=22.97 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhhhc
Q psy11783 144 LLLAFFVDTIVWYKAG 159 (189)
Q Consensus 144 ~~~~~~~~~~~~~~~k 159 (189)
.+++++.+.++|..||
T Consensus 16 ~iiaIvvW~iv~ieYr 31 (81)
T PF00558_consen 16 LIIAIVVWTIVYIEYR 31 (81)
T ss_dssp HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345666666666665
No 116
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=31.97 E-value=31 Score=29.91 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=27.1
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeee
Q psy11783 67 SMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVV 107 (189)
Q Consensus 67 ~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~li 107 (189)
...++.+.+++++|+.++|+...... +|.+=+|++.+.+.
T Consensus 124 ~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~~ 163 (406)
T PRK11551 124 LIALTSEAVGPRLRGTAVSLMYCGVP-FGGALASVIGVLAA 163 (406)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 33455677889999999999887654 34455666655443
No 117
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=31.24 E-value=1.1e+02 Score=20.98 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q psy11783 142 FILLLAFFVDTIVWY 156 (189)
Q Consensus 142 ~~~~~~~~~~~~~~~ 156 (189)
+|.++.+++.++.++
T Consensus 18 ~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 18 VLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 118
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=31.20 E-value=49 Score=29.15 Aligned_cols=44 Identities=7% Similarity=-0.136 Sum_probs=25.8
Q ss_pred hccccceeeEEeecCCCC-chHHHHHHHHHHHhhcCcccceeeeee
Q psy11783 62 TSEVGSMLLILRCVDPSD-KAMALGLIQFAIGLFGNVPCPIVYGAV 106 (189)
Q Consensus 62 ~~~~p~~~i~LR~V~~~~-ks~AlG~~~~~~rllg~IPgPi~fG~l 106 (189)
+..+|......+..+++. ++.+.|+.. +.+.+|..=+..++|.+
T Consensus 309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~-~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 309 FFVVPMNALLQHRGHVLVGAGHSIAVQN-FNENLAMLLMLGLYSLL 353 (393)
T ss_pred hhhhhHHHHHHhhCcccccchhHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 334555555445444433 578888877 55666666666777643
No 119
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=29.94 E-value=25 Score=33.61 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=28.5
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeee
Q psy11783 66 GSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGA 105 (189)
Q Consensus 66 p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~ 105 (189)
.....+-+-||+++|+.|.|+.. ....+|.+=||++.+.
T Consensus 134 A~~syI~~WfP~kER~ratsi~~-sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSR-AAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44445668899999999999874 4455666667777776
No 120
>KOG2927|consensus
Probab=28.90 E-value=61 Score=29.68 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=13.2
Q ss_pred CccceEEeechhHHHHHHH
Q psy11783 120 EKGACNLYDTDVFRVFYHG 138 (189)
Q Consensus 120 ~~g~C~~YD~~~l~~~~~~ 138 (189)
..-.=|+||...+.+..++
T Consensus 176 de~YVW~yep~~~~~~vl~ 194 (372)
T KOG2927|consen 176 DEHYVWIYEPRPLMWQVLG 194 (372)
T ss_pred CceEEEeccCCchhHHHHH
Confidence 4457899998887664443
No 121
>KOG3626|consensus
Probab=28.76 E-value=1.6e+02 Score=29.59 Aligned_cols=107 Identities=16% Similarity=0.259 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhhccccceeeEEeecCCCC----chHHHHHHHHHHHhhcCcccceeeeeeeccccccccccCC-Ccc
Q psy11783 48 WYIILFSFFVFIHSTSEVGSMLLILRCVDPSD----KAMALGLIQFAIGLFGNVPCPIVYGAVVDSACLVWESVCG-EKG 122 (189)
Q Consensus 48 ~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~----ks~AlG~~~~~~rllg~IPgPi~fG~liD~tCl~W~~~Cg-~~g 122 (189)
.+.+++++..++.+.+.+|...+=+-.+++.- -++=+|+.+ .+|+|| |+ .|+++-+-|+.+=.+=| ...
T Consensus 235 ~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~-~~~~lG----Pa-iGfllgS~~l~lYvD~~~~~~ 308 (735)
T KOG3626|consen 235 YPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY-SMAILG----PA-IGFLLGSFCLKLYVDFGLSPI 308 (735)
T ss_pred hhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH-HHHHhh----hH-HHHHHHHHHHHeeeccccCCC
Confidence 34556667777788999998877776666544 456677766 456665 33 46666676764421110 111
Q ss_pred ceEEeechhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy11783 123 ACNLYDTDVFRVFYHGTTGFILLLAFFVDTIVWYKAGSI 161 (189)
Q Consensus 123 ~C~~YD~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k~~ 161 (189)
.=---|.+..+-.++|. ++.-++.++..+..+++.|.+
T Consensus 309 ~it~~DPrWIGAWWlGF-Li~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 309 GITPTDPRWIGAWWLGF-LICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCCCCCcchhhHHHHHH-HHHHHHHHHHHHHHHhCcccC
Confidence 11124666666666663 222223333334445555543
No 122
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=28.54 E-value=7.1 Score=34.59 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=29.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeee
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVV 107 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~li 107 (189)
..-...|++.|+.+.|+...+.|+.| +=+|++.|.++
T Consensus 304 ~~~~~~p~~~rgt~~G~~~~~g~~~~-~~~~~~~~~~~ 340 (368)
T TIGR00903 304 WIGKFCDKELHGKAAGAIGFTSRAIS-VALALAAMLFI 340 (368)
T ss_pred HHHHhcchhhcCcccchhhHHHHHHH-HHHHHHHHHHh
Confidence 44588999999999999999999975 44566666666
No 123
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=28.51 E-value=1.7e+02 Score=25.10 Aligned_cols=41 Identities=24% Similarity=0.519 Sum_probs=23.4
Q ss_pred ccCCCccceEEeechhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy11783 116 SVCGEKGACNLYDTDVFRVFYHGTTGFILLLAFFVDTIVWYKAGSI 161 (189)
Q Consensus 116 ~~Cg~~g~C~~YD~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k~~ 161 (189)
..|.+.++|+.--+-.|.|.. ++.++-++.-+.+|+..++.
T Consensus 27 yEc~KDdsc~~iG~fLlWyfv-----iilvLm~~~ras~Wmse~K~ 67 (243)
T PF15468_consen 27 YECRKDDSCGAIGSFLLWYFV-----IILVLMFFSRASVWMSEKKK 67 (243)
T ss_pred hhhccCCccchhhhHHHHHHH-----HHHHHHHHHHHHHHHhhhhh
Confidence 458888899877665554422 22233445556677665543
No 124
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=28.51 E-value=12 Score=34.31 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=36.9
Q ss_pred HhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 60 HSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 60 ~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+....|.....+..+|+++++.+.|+..+ .|-+|..-|+.+.|.+.+.
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 365 AASALLASTSAIMAAAPPEKAAAAGAIETM-AYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHhcCCHHhcchHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 334445666677889999999998876554 5667777799999998875
No 125
>KOG0255|consensus
Probab=28.35 E-value=60 Score=29.66 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 46 VKWYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 46 ~~~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
+..|+++-++..+......+-...+..=.+.+++|..++.+ ...-..+.+-+|++.++++.
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~--~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL--GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 44455555555554444444455667789999999999988 33333344556666677666
No 126
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=28.32 E-value=1.1e+02 Score=23.29 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=22.5
Q ss_pred ccCCCccceEEeechhHHHHHHHHHHHHHHHHHHH
Q psy11783 116 SVCGEKGACNLYDTDVFRVFYHGTTGFILLLAFFV 150 (189)
Q Consensus 116 ~~Cg~~g~C~~YD~~~l~~~~~~l~~~~~~~~~~~ 150 (189)
+.|.....|-....++.++.++.+..++.++.+.+
T Consensus 74 ~~c~~g~~C~~~~~~~~~~~~lwi~t~~vl~~l~~ 108 (116)
T PF02411_consen 74 KACEPGSACARPQSRRQTKILLWIVTVLVLLLLAF 108 (116)
T ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778988777776666666655554444443
No 127
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=27.48 E-value=65 Score=28.78 Aligned_cols=45 Identities=22% Similarity=0.124 Sum_probs=30.5
Q ss_pred hccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeee
Q psy11783 62 TSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVV 107 (189)
Q Consensus 62 ~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~li 107 (189)
...++......+..++++|+.++++...+.. +|..=||.+.+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 110 FLETAANPYILVMGPESTATRRLNLAQSFNP-FGSIIGMVVAQQLI 154 (410)
T ss_pred HHHhhhhHHHHHHCCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3334434444567788889999888776654 47777888777765
No 128
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=27.47 E-value=13 Score=32.38 Aligned_cols=39 Identities=8% Similarity=-0.160 Sum_probs=28.8
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
..+.+.+++++|+.+.|+..... .+|.+=||.+.|.+++
T Consensus 135 ~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 135 LWGIGRVGALHTGRVISWNGIAT-YGALAIGAPLGVLLYH 173 (399)
T ss_pred HHHHhhcChhhhccchhhhhhhh-hHHHHHHHHHHHHHHH
Confidence 34568899999999999866544 3466777777777765
No 129
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=27.44 E-value=1.5e+02 Score=21.30 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11783 132 FRVFYHGTTGFILLLAFFVDTIVW 155 (189)
Q Consensus 132 l~~~~~~l~~~~~~~~~~~~~~~~ 155 (189)
+...++|...++.+++++.+.+-+
T Consensus 11 l~lMvlGMg~VfvFL~lLI~~i~~ 34 (82)
T PRK02919 11 FTLMFLGMGFVLAFLFLLIFAIRG 34 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777777766554443
No 130
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=27.40 E-value=52 Score=30.99 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=29.2
Q ss_pred eecCCC--CchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 73 RCVDPS--DKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 73 R~V~~~--~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
+..|++ .|..+.|+.....+ +|..=+|++.|++.+
T Consensus 127 elfp~~~~~R~sgf~i~Y~~~n-lG~~iap~l~g~L~~ 163 (493)
T PRK15462 127 ELYEPTDPRRDGGFSLMYAAGN-VGSIIAPIACGYAQE 163 (493)
T ss_pred HHCCCCCccccceehHHHHHHH-HHHHHHHHHHHHHHh
Confidence 555655 58889999999999 588999999999977
No 131
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=27.22 E-value=1.1e+02 Score=26.58 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=16.4
Q ss_pred cccceeeEE-eecCCCCchHHHHHHHHH
Q psy11783 64 EVGSMLLIL-RCVDPSDKAMALGLIQFA 90 (189)
Q Consensus 64 ~~p~~~i~L-R~V~~~~ks~AlG~~~~~ 90 (189)
.+|.....- ...++++|+.+.++....
T Consensus 117 ~~~~~al~~~~~~~~~~R~~~~~~~~~~ 144 (437)
T TIGR00792 117 NIPYWSLVPAITLDPRERESLSTFRRFG 144 (437)
T ss_pred cccHhhCcccccCCHHHHHHHHHHHHHH
Confidence 445433333 344678999888876654
No 132
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=26.93 E-value=14 Score=32.23 Aligned_cols=37 Identities=11% Similarity=-0.195 Sum_probs=30.8
Q ss_pred eecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 73 RCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 73 R~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+..|+++|+.+.|+...+..-+|.+=||++.|++.|.
T Consensus 319 ~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~ 355 (382)
T TIGR00902 319 AAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT 355 (382)
T ss_pred HhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3448889999999987777778888899999999885
No 133
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=26.93 E-value=1.2e+02 Score=22.28 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11783 129 TDVFRVFYHGTTGFILLLAFFVDTIVWYKAG 159 (189)
Q Consensus 129 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k 159 (189)
.+.+|..++-+.+.+.+++++..-++|.+|.
T Consensus 20 a~Dmrv~ifkllL~WlvlsLl~I~lAWk~yG 50 (92)
T PF15128_consen 20 ANDMRVQIFKLLLGWLVLSLLAIHLAWKVYG 50 (92)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568888888888999999999999998875
No 134
>KOG3498|consensus
Probab=26.62 E-value=33 Score=23.88 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=17.9
Q ss_pred EEeecCCCCch-----HHHHHHHHHHHhhcC
Q psy11783 71 ILRCVDPSDKA-----MALGLIQFAIGLFGN 96 (189)
Q Consensus 71 ~LR~V~~~~ks-----~AlG~~~~~~rllg~ 96 (189)
.=||+.|+.|- .|.|+.+.++.++|+
T Consensus 22 ~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf 52 (67)
T KOG3498|consen 22 VKRCTKPDRKEFTKIAKATAIGFVIMGFIGF 52 (67)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999885 355666666666664
No 135
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=26.59 E-value=12 Score=32.55 Aligned_cols=45 Identities=7% Similarity=-0.147 Sum_probs=34.1
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.|..+..++..++++++.+.|+...+...+|..=||++.|.+.|.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~ 355 (382)
T PRK11128 311 HLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH 355 (382)
T ss_pred HHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566667777787888877677777878899999999996
No 136
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=26.56 E-value=65 Score=18.24 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=15.9
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhccc
Q psy11783 138 GTTGFILLLAF-FVDTIVWYKAGSI 161 (189)
Q Consensus 138 ~l~~~~~~~~~-~~~~~~~~~~k~~ 161 (189)
|+..++++++- +-.++.|...||+
T Consensus 1 gIGa~Lkvla~~LP~lISWIK~kr~ 25 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLISWIKNKRQ 25 (26)
T ss_dssp -HHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHhcChHHHHHHHHHhc
Confidence 35567888765 4568888877654
No 137
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=26.43 E-value=1.7e+02 Score=19.19 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=7.8
Q ss_pred HHHHhhhcccccCCCCCCC
Q psy11783 152 TIVWYKAGSINFADEETNT 170 (189)
Q Consensus 152 ~~~~~~~k~~~~~~~~~~~ 170 (189)
++.+|..|+.+ ++|.|.+
T Consensus 20 ~~f~Wavk~GQ-fDDle~~ 37 (51)
T TIGR00847 20 VAFLWSLKSGQ-YDDLKGA 37 (51)
T ss_pred HHHHHHHccCC-CCCCccH
Confidence 33344555444 4444433
No 138
>PTZ00207 hypothetical protein; Provisional
Probab=26.02 E-value=53 Score=31.75 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=26.1
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeee
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAV 106 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~l 106 (189)
....+- .|++|+.++|+......+=+.|=+|++.+.+
T Consensus 143 ~~i~~~-Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 143 VTVLSV-FPSNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHh-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554 4689999999999888766666666655554
No 139
>PF12591 DUF3762: Protein of unknown function (DUF3762); InterPro: IPR022239 This domain family is found in viruses, and is approximately 80 amino acids in length. The family is found in association with PF05533 from PFAM.
Probab=25.83 E-value=27 Score=24.64 Aligned_cols=14 Identities=36% Similarity=0.866 Sum_probs=11.9
Q ss_pred Ccccceeeeeeecc
Q psy11783 96 NVPCPIVYGAVVDS 109 (189)
Q Consensus 96 ~IPgPi~fG~liD~ 109 (189)
.||-||.||++--.
T Consensus 6 AiPVPi~FG~~p~T 19 (80)
T PF12591_consen 6 AIPVPISFGAMPTT 19 (80)
T ss_pred Eeecceeecccccc
Confidence 58999999998664
No 140
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.92 E-value=59 Score=20.59 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhcc
Q psy11783 147 AFFVDTIVWYKAGS 160 (189)
Q Consensus 147 ~~~~~~~~~~~~k~ 160 (189)
.++|..+++|.+++
T Consensus 19 ~~~F~gi~~w~~~~ 32 (49)
T PF05545_consen 19 FVFFIGIVIWAYRP 32 (49)
T ss_pred HHHHHHHHHHHHcc
Confidence 34455555555543
No 141
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=24.43 E-value=1.1e+02 Score=26.16 Aligned_cols=13 Identities=8% Similarity=0.031 Sum_probs=8.8
Q ss_pred cceEEeechhHHH
Q psy11783 122 GACNLYDTDVFRV 134 (189)
Q Consensus 122 g~C~~YD~~~l~~ 134 (189)
-.=|+||...+-+
T Consensus 99 ~YvW~ye~~~~~~ 111 (224)
T PF03839_consen 99 YYVWIYEPSPLMQ 111 (224)
T ss_pred EEEEEecCCcHHH
Confidence 4678898776543
No 142
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=24.37 E-value=1.2e+02 Score=27.96 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=16.0
Q ss_pred eEEeecCCCCchHHHHHHH
Q psy11783 70 LILRCVDPSDKAMALGLIQ 88 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~ 88 (189)
.+.+..|++.|+.++|+..
T Consensus 406 ~~~~~aP~~~rg~~~g~~~ 424 (500)
T PRK09584 406 MVAQLVPQRLMGFIMGSWF 424 (500)
T ss_pred HHHHhCcHHHHHHHHHHHH
Confidence 4568899999999999765
No 143
>PRK10720 uracil transporter; Provisional
Probab=24.36 E-value=55 Score=30.14 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=19.0
Q ss_pred HHHHhhcCcccceeeeeeeccccc
Q psy11783 89 FAIGLFGNVPCPIVYGAVVDSACL 112 (189)
Q Consensus 89 ~~~rllg~IPgPi~fG~liD~tCl 112 (189)
-+..+++.||.|++.|..+=-.++
T Consensus 320 k~~a~ia~iP~pVlgg~~i~~fg~ 343 (428)
T PRK10720 320 KLAAAIQAIPLPVMGGVSLLLYGV 343 (428)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 366788999999999998855443
No 144
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=24.25 E-value=2e+02 Score=22.10 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=18.0
Q ss_pred echhHHHHHHHHHHHH--HHHHHHHHHHHHhhhcc
Q psy11783 128 DTDVFRVFYHGTTGFI--LLLAFFVDTIVWYKAGS 160 (189)
Q Consensus 128 D~~~l~~~~~~l~~~~--~~~~~~~~~~~~~~~k~ 160 (189)
|....|..++. .+++ -.++++.|++.|+...+
T Consensus 32 ~~~~VRl~~vl-~~~~~~~~~~~~~Yi~l~~~lp~ 65 (118)
T PRK10697 32 PVKLVRIIVVL-SIFFGLFVFTLVAYIILSFALDP 65 (118)
T ss_pred CHHHHHHHHHH-HHHHhhchHHHHHHHHHHHhccC
Confidence 34445554333 2222 23567788999988753
No 145
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=24.24 E-value=17 Score=31.92 Aligned_cols=51 Identities=6% Similarity=0.045 Sum_probs=34.2
Q ss_pred HHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 57 VFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 57 ~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
.++.....++......+.+++++|+.+.|+...- --+|.+=|+.+.+.+++
T Consensus 105 ~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g-~~~g~i~g~~l~~~l~~ 155 (402)
T PRK11902 105 AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLG-YRLAMLVSGGLALWLAD 155 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHH-HHHHHHHHhHHHHHHHh
Confidence 3444444444445667889999999999998854 33466666777777765
No 146
>PRK09848 glucuronide transporter; Provisional
Probab=24.04 E-value=46 Score=29.71 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=25.9
Q ss_pred eeEEeecCCCC-------chHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 69 LLILRCVDPSD-------KAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 69 ~i~LR~V~~~~-------ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
......+++++ ++.+.|++.+.. .+|.-=|+.+.|.+++.
T Consensus 342 al~~~~~~~~~~~~g~r~~G~~~~~~~~~~-klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 342 ALEADTVEYGEYLTGVRIEGLTYSLFSFTR-KCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHhhhhhHHhhCccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34456666543 467777755544 46666688888888874
No 147
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=23.71 E-value=1.9e+02 Score=18.41 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=6.5
Q ss_pred HhhhcccccCCCCCCC
Q psy11783 155 WYKAGSINFADEETNT 170 (189)
Q Consensus 155 ~~~~k~~~~~~~~~~~ 170 (189)
+|..|+.+ ++|.|.+
T Consensus 22 ~Wavk~GQ-fdD~e~~ 36 (45)
T PF03597_consen 22 LWAVKSGQ-FDDLEGP 36 (45)
T ss_pred HHHHccCC-CCCCcch
Confidence 34444444 4444433
No 148
>PRK03893 putative sialic acid transporter; Provisional
Probab=23.52 E-value=13 Score=33.41 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=31.9
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 68 MLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 68 ~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
..++.+.+++++|+.++|+..... -+|.+-+|++.|.+++
T Consensus 130 ~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~ 169 (496)
T PRK03893 130 ATYVIESWPKHLRNKASGFLISGF-SIGAVVAAQVYSLVVP 169 (496)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 345668889999999999887654 4678889999988876
No 149
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=23.17 E-value=69 Score=27.56 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=22.7
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhcCcccceee
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVY 103 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~f 103 (189)
..+-+..++++|+.++|+..... .+|.+=+|++.
T Consensus 150 ~~i~~~~~~~~r~~~~~~~~~~~-~~G~~~~~~~~ 183 (481)
T TIGR00879 150 MYLSEIAPKALRGALTSLYQLAI-TFGILVAYGFG 183 (481)
T ss_pred HHHHccCChhhhhhhhhHHHHHH-HHHHHHHHHHH
Confidence 34557788999999999876554 34555555544
No 150
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=22.97 E-value=82 Score=26.19 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=17.7
Q ss_pred CCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 77 PSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 77 ~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
+++|+.+.|+...... +|.+-++.+.+.++|
T Consensus 121 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 151 (377)
T TIGR00890 121 PDKRGLASGIIIGGYG-LGSFILSPLITSVIN 151 (377)
T ss_pred CcccHHHHHHHHHhcc-hhHhHHHHHHHHHHh
Confidence 5789999888766544 333333334444443
No 151
>PRK10091 MFS transport protein AraJ; Provisional
Probab=22.94 E-value=83 Score=27.29 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=25.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
++-|..++++|..++|+..... .+|..=||.+.|++.|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 115 VLSKIIKPGKVTAAVAGMVSGM-TVANLLGIPLGTYLSQ 152 (382)
T ss_pred HHHHhCChHHhhHHHHHHHHHH-HHHHHHhccHHHHHhh
Confidence 3457778888999988876544 3444456777776665
No 152
>KOG2678|consensus
Probab=22.45 E-value=1.3e+02 Score=25.97 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=23.7
Q ss_pred ceEEeechhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy11783 123 ACNLYDTDVFRVFYHGTTGFILLLAFFVDTIVWYKAGS 160 (189)
Q Consensus 123 ~C~~YD~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~k~ 160 (189)
.=.-||..++++.|....+++.++++++.++...+.|+
T Consensus 205 rve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqifkk 242 (244)
T KOG2678|consen 205 RVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIFKK 242 (244)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33458877776655554556666777776666655544
No 153
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=22.44 E-value=23 Score=31.77 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=33.6
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...+...+|.++++.++-+.++...+ .|..=.|.+.|++.|.
T Consensus 340 p~i~sl~~~~~g~~~~~~s~~l~~~~---~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 340 PTIYGIALKGLGQDTKYGAAGLVMAI---IGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHH---hccchHHHHHHHHHHH
Confidence 33445788999988887777776654 9999999999999994
No 154
>PF15050 SCIMP: SCIMP protein
Probab=22.19 E-value=1.4e+02 Score=23.42 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy11783 137 HGTTGFILLLAFFV 150 (189)
Q Consensus 137 ~~l~~~~~~~~~~~ 150 (189)
+.|++.+.++++.+
T Consensus 10 iiLAVaII~vS~~l 23 (133)
T PF15050_consen 10 IILAVAIILVSVVL 23 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 155
>PF15102 TMEM154: TMEM154 protein family
Probab=22.19 E-value=50 Score=26.45 Aligned_cols=13 Identities=8% Similarity=-0.176 Sum_probs=5.8
Q ss_pred HHhhhcccccCCC
Q psy11783 154 VWYKAGSINFADE 166 (189)
Q Consensus 154 ~~~~~k~~~~~~~ 166 (189)
..+++||++..++
T Consensus 78 lv~~~kRkr~K~~ 90 (146)
T PF15102_consen 78 LVIYYKRKRTKQE 90 (146)
T ss_pred heeEEeecccCCC
Confidence 3344455554443
No 156
>PF10530 Toxin_35: Toxin with inhibitor cystine knot ICK or Knottin scaffold; InterPro: IPR019553 Spider toxins of the CSTX family are ion channel toxins containing an inhibitor cystine knot (ICK) structural motif or Knottin scaffold. The four disulphide bonds present in the CSTX spider toxin family are arranged in the following pattern: 1-4, 2-5, 3-8 and 6-7. CSTX-1 is the most important component of Cupiennius salei (Wandering spider) venom in terms of relative abundance and toxicity and therefore is likely to contribute significantly to the overall toxicity of the whole venom. CSTX-1 blocked rat neuronal L-type, but no other types of HVA Cav channels []. Interestingly, the omega-toxins from Phoneutria nigriventer (Brazilian armed spider) venom (another South American species also belonging to the Ctenidae family) are included as they carry the same disulphide bond arrangement. suggested that CSTX-1 may interact with Cav channels. Calcium ion voltage channel heteromultimer containing an L-type pore-forming alpha1-subunit is the most probable candidate for the molecular target of CSTX-1 these toxins [].
Probab=21.91 E-value=67 Score=17.81 Aligned_cols=18 Identities=22% Similarity=0.706 Sum_probs=12.9
Q ss_pred cccccccC--CCccceEEee
Q psy11783 111 CLVWESVC--GEKGACNLYD 128 (189)
Q Consensus 111 Cl~W~~~C--g~~g~C~~YD 128 (189)
|+-|.++| ++.|-|+.|-
T Consensus 1 CI~~~~sC~~dk~gCC~~~~ 20 (23)
T PF10530_consen 1 CIGKRHSCTHDKHGCCFKWK 20 (23)
T ss_pred CCccccccccCCCCceeeeE
Confidence 66787888 5678887663
No 157
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=21.77 E-value=36 Score=32.01 Aligned_cols=64 Identities=5% Similarity=0.010 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceee-eeeecc
Q psy11783 46 VKWYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVY-GAVVDS 109 (189)
Q Consensus 46 ~~~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~f-G~liD~ 109 (189)
+.+|.++.++..++.+++..|..-.+-+=-+.++|....++....-.+=|.+++|+.- |++.++
T Consensus 117 ~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 117 LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 4566677777777888888887766667778889999998888777777777777653 666554
No 158
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=21.55 E-value=2.9e+02 Score=22.94 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=28.1
Q ss_pred CCCCchHHHHHHHHHHHhhcCcccceeeeeeeccccc
Q psy11783 76 DPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDSACL 112 (189)
Q Consensus 76 ~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~tCl 112 (189)
+...|...+|+..++...+|.+===+.+|+++|--..
T Consensus 86 ~~~~~~~~~al~LIlgGAlGNliDRl~~G~VvDFi~~ 122 (191)
T PRK14789 86 PADSRWITVAVGMIFGGGLSNLVDRIRQGYVVDFIQF 122 (191)
T ss_pred cccchHHHHHHHHHHHHHHhhHHHHHhcCceEEeEec
Confidence 3455666778888888888887777889999997554
No 159
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.25 E-value=1.1e+02 Score=23.62 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy11783 134 VFYHGTTGF 142 (189)
Q Consensus 134 ~~~~~l~~~ 142 (189)
.+.+|..++
T Consensus 68 ~Ii~gv~aG 76 (122)
T PF01102_consen 68 GIIFGVMAG 76 (122)
T ss_dssp HHHHHHHHH
T ss_pred ehhHHHHHH
Confidence 334443333
No 160
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.86 E-value=1.5e+02 Score=23.98 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy11783 132 FRVFYHGTTGFILLLAFFVDTIVWYKAGS 160 (189)
Q Consensus 132 l~~~~~~l~~~~~~~~~~~~~~~~~~~k~ 160 (189)
++..+..+.+.+.++.++++++.+|+.+|
T Consensus 27 fsthm~tILiaIvVliiiiivli~lcssR 55 (189)
T PF05568_consen 27 FSTHMYTILIAIVVLIIIIIVLIYLCSSR 55 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333444444555555555443
No 161
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=20.71 E-value=51 Score=27.82 Aligned_cols=43 Identities=21% Similarity=0.121 Sum_probs=26.6
Q ss_pred cceeeEEeecCCCCchHHHHHHHHH---HHhhcCcccceeeeeeec
Q psy11783 66 GSMLLILRCVDPSDKAMALGLIQFA---IGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 66 p~~~i~LR~V~~~~ks~AlG~~~~~---~rllg~IPgPi~fG~liD 108 (189)
+....+-+..++++|+.++|+.... ...+|.+-+|.+.+.+++
T Consensus 110 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 155 (366)
T TIGR00886 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIF 155 (366)
T ss_pred hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3344555778899999999987643 344444445555544443
No 162
>TIGR00895 2A0115 benzoate transport.
Probab=20.65 E-value=10 Score=32.04 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=29.5
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 69 LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 69 ~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..+.+.+++++|+.+.|+..... .+|.+=||++.|.+.+.
T Consensus 128 ~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~ 167 (398)
T TIGR00895 128 ALVSEYAPKRFRGTAVGLMFCGY-PIGAAVGGFLAGWLIPV 167 (398)
T ss_pred HHHHHHcCHHhhchhHhhHhhHH-HHHHHHHHHHHHHHhhc
Confidence 34456678889999999876544 45677788888888774
No 163
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=20.50 E-value=1e+02 Score=27.38 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=24.2
Q ss_pred eecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 73 RCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 73 R~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
+..++++++.++|+...... +|.+=||++.|.+.|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 131 EAFGQTKGIKLMAIITSIVL-VAPIIGPLSGAALMH 165 (413)
T ss_pred HhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45567778888888777654 344557887777765
No 164
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.39 E-value=1.4e+02 Score=25.26 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy11783 47 KWYIILFSFFVFIH 60 (189)
Q Consensus 47 ~~F~~~~~~~~f~~ 60 (189)
+.|+..+.++.+++
T Consensus 9 ~~~~~~illg~~iG 22 (248)
T PF11368_consen 9 LRFLLLILLGGLIG 22 (248)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 165
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=20.30 E-value=19 Score=30.48 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=27.6
Q ss_pred cCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 75 VDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 75 V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..++++..+.|+...+.+ +|.+=||.+.|.++|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~-~g~~~g~~~~g~~~~~ 349 (375)
T TIGR00899 316 LMPGRAGAATTLYTNTGR-VGWIIAGSVGGILAER 349 (375)
T ss_pred hCcchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 445677788999887777 7888899999999884
No 166
>PRK10504 putative transporter; Provisional
Probab=20.26 E-value=19 Score=32.18 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=30.3
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+.+.+++++|+.+.|+...... +|.+=||.+.|.+.|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~g~l~~~ 160 (471)
T PRK10504 122 TVMKIVPREQYMAAMTFVTLPGQ-VGPLLGPALGGLLVEY 160 (471)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhh
Confidence 44577888999999998876554 4667799999999874
No 167
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=20.12 E-value=1.6e+02 Score=25.55 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11783 132 FRVFYHGTTGFILLLAFFVDTIVWY 156 (189)
Q Consensus 132 l~~~~~~l~~~~~~~~~~~~~~~~~ 156 (189)
|+..|+.++.++.+++++|.+..+.
T Consensus 245 Lgi~ylvvg~i~~v~~i~~~~~~~~ 269 (278)
T PF03381_consen 245 LGIAYLVVGGICLVLAIIFLIIHYF 269 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666555544443
Done!