Query psy11783
Match_columns 189
No_of_seqs 121 out of 604
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 18:52:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 93.0 0.028 9.5E-07 47.5 1.3 43 67-109 367-409 (451)
2 2xut_A Proton/peptide symporte 85.4 0.11 3.7E-06 45.3 -1.2 45 65-110 424-468 (524)
3 4aps_A DI-OR tripeptide H+ sym 83.8 0.28 9.6E-06 42.2 0.8 44 64-108 404-447 (491)
4 1pw4_A Glycerol-3-phosphate tr 78.1 0.39 1.3E-05 40.4 -0.3 56 53-109 126-181 (451)
5 3o7q_A L-fucose-proton symport 76.6 2.6 8.9E-05 35.1 4.4 59 48-107 119-177 (438)
6 4aps_A DI-OR tripeptide H+ sym 73.5 2.1 7.2E-05 36.6 3.1 46 63-109 125-172 (491)
7 2gfp_A EMRD, multidrug resista 69.9 1.4 4.7E-05 36.2 1.1 41 67-108 109-149 (375)
8 4gc0_A D-xylose-proton symport 59.1 2.9 9.9E-05 35.6 1.1 36 73-109 397-432 (491)
9 2jo1_A Phospholemman; FXYD1, N 50.7 42 0.0014 22.7 5.5 25 126-150 10-34 (72)
10 2gfp_A EMRD, multidrug resista 49.8 1.8 6.3E-05 35.5 -1.7 48 60-109 305-352 (375)
11 2xut_A Proton/peptide symporte 46.2 14 0.00048 31.7 3.3 46 63-109 126-174 (524)
12 2cfq_A Lactose permease; trans 38.1 4.2 0.00014 34.4 -1.3 39 71-109 337-375 (417)
13 3o7q_A L-fucose-proton symport 36.8 2.7 9.2E-05 35.0 -2.7 37 70-109 371-407 (438)
14 3qrx_B Melittin; calcium-bindi 35.3 17 0.00057 19.7 1.3 23 139-161 2-25 (26)
15 2zxe_G FXYD10, phospholemman-l 27.2 49 0.0017 22.5 2.9 15 125-139 12-26 (74)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=93.03 E-value=0.028 Score=47.54 Aligned_cols=43 Identities=23% Similarity=0.143 Sum_probs=38.0
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 67 SMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 67 ~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
......+.+|+++|+.+.|+..++..++|.+-+|.+.|++.|.
T Consensus 367 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 367 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456678899999999999999999998999999999999995
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=85.36 E-value=0.11 Score=45.28 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=35.9
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeeccc
Q psy11783 65 VGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDSA 110 (189)
Q Consensus 65 ~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~t 110 (189)
++......+.+|+++|+.+.|+..++. -+|.+=||.+.|.+.|.+
T Consensus 424 ~~~~~~~~~~~p~~~~g~~~g~~~~~~-~~g~~~g~~~~g~~~~~~ 468 (524)
T 2xut_A 424 ATGLEFAYSQAPKAMKGTIMSFWTLSV-TVGNLWVLLANVSVKSPT 468 (524)
T ss_dssp HHHTTTHHHHCCTTCCTTTHHHHGGGH-HHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHH-HHHHHHHHHHHHHhcccc
Confidence 444456678899999999999987765 567788899999998863
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=83.83 E-value=0.28 Score=42.15 Aligned_cols=44 Identities=2% Similarity=-0.053 Sum_probs=34.2
Q ss_pred cccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 64 EVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 64 ~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
.++......+.+|++.|+.+.|+..+. +-+|.+-+|.+.|.+.|
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~-~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLS-SSVGSALNAQLVTLYNA 447 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHH-HHHHHHHHHHHGGGGGG
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 444555777899999999999997665 45677778988888766
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=78.11 E-value=0.39 Score=40.37 Aligned_cols=56 Identities=5% Similarity=-0.024 Sum_probs=38.0
Q ss_pred HHHHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 53 FSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 53 ~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.++..+..+...++....+-+.+++++|+.++|+..... -+|.+=||++.|++++.
T Consensus 126 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 126 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH-NVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH-HHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333333333343444455668888999999999976554 55788899999988763
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=76.59 E-value=2.6 Score=35.13 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeee
Q psy11783 48 WYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVV 107 (189)
Q Consensus 48 ~F~~~~~~~~f~~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~li 107 (189)
.+++..++..+..+...++....+-+.+++++|+.++|+..... -+|.+-||++.|.++
T Consensus 119 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN-SFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH-HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 33343444333333444444456668889999999999876654 567888899988888
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=73.48 E-value=2.1 Score=36.57 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=31.3
Q ss_pred ccccceeeEEeecCCCC--chHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 63 SEVGSMLLILRCVDPSD--KAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 63 ~~~p~~~i~LR~V~~~~--ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...+....+-+.+++++ |+.++|+.... .-+|.+-||++.|.+.|.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFG-INLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHHHHSSSCTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHcCcccccceeeehHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 33334445557888888 55666655444 556888899999998874
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=69.87 E-value=1.4 Score=36.25 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=31.9
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeec
Q psy11783 67 SMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVD 108 (189)
Q Consensus 67 ~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD 108 (189)
....+-+.+++++|+.+.|+..... -+|.+-||++.|.+.|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 109 ARTLPRDLYERTQLRHANSLLNMGI-LVSPLLAPLIGGLLDT 149 (375)
T ss_dssp HHHHHHHHHHTSSCCSHHHHHHHHH-HHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHH
Confidence 3445567788999999999977655 4578889999998886
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=59.11 E-value=2.9 Score=35.58 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=26.6
Q ss_pred eecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 73 RCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 73 R~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
-..|.+.|+.+.|+...+.|+.+.+ +|.++..+.+.
T Consensus 397 E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~ 432 (491)
T 4gc0_A 397 EIFPNAIRGKALAIAVAAQWLANYF-VSWTFPMMDKN 432 (491)
T ss_dssp HSSCTTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHH
T ss_pred HhCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5678999999999998888776544 55666666553
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=50.65 E-value=42 Score=22.73 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=15.7
Q ss_pred EeechhHHHHHHHHHHHHHHHHHHH
Q psy11783 126 LYDTDVFRVFYHGTTGFILLLAFFV 150 (189)
Q Consensus 126 ~YD~~~l~~~~~~l~~~~~~~~~~~ 150 (189)
.||...||..=+.+++++-++++++
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~i 34 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILI 34 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHH
Confidence 6999999976555545444444443
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=49.85 E-value=1.8 Score=35.51 Aligned_cols=48 Identities=6% Similarity=-0.219 Sum_probs=34.3
Q ss_pred HhhccccceeeEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 60 HSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 60 ~~~~~~p~~~i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
.+....+......+.+| ++|+.+.|+..... -+|.+-+|.+.|.+.|.
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQ-NIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHH-HHHHHCCSTTCTHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-cccchHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 33344444455567777 89999999988654 57788899999988663
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=46.19 E-value=14 Score=31.69 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=31.9
Q ss_pred ccccceeeEEeecCCCCchHHHHH---HHHHHHhhcCcccceeeeeeecc
Q psy11783 63 SEVGSMLLILRCVDPSDKAMALGL---IQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 63 ~~~p~~~i~LR~V~~~~ks~AlG~---~~~~~rllg~IPgPi~fG~liD~ 109 (189)
..++....+-+.+++++|+.+.++ ... ..-+|.+=||++.|++.|.
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYF-TINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHH-HHHHHHHHHHHTSTHHHHT
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 334444566688899999877666 333 4556778899999988873
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=38.15 E-value=4.2 Score=34.43 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=29.8
Q ss_pred EEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 71 ILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 71 ~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
+-+..|++.|+.+.|+..-..+-+|.+-||++.|++.|.
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~ 375 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence 335567888888888864455667888899999999884
No 13
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=36.81 E-value=2.7 Score=35.05 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=29.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHHhhcCcccceeeeeeecc
Q psy11783 70 LILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS 109 (189)
Q Consensus 70 i~LR~V~~~~ks~AlG~~~~~~rllg~IPgPi~fG~liD~ 109 (189)
...+.++++ ++.+.++.. +..+|.+-+|.++|++.|.
T Consensus 371 ~~~~~~~~~-~~~~~~~~~--~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 371 LGIKNLGQD-TKYGSSFIV--MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHSSCGGG-HHHHHHHHH--HTTHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccc-ccchhhHHH--HHHHHHHHHHHHHHHHHHH
Confidence 446777755 888888765 5568999999999999996
No 14
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=35.25 E-value=17 Score=19.75 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHH-HHHHHhhhccc
Q psy11783 139 TTGFILLLAFFV-DTIVWYKAGSI 161 (189)
Q Consensus 139 l~~~~~~~~~~~-~~~~~~~~k~~ 161 (189)
+..++|+++..+ .++.|...||+
T Consensus 2 iGa~LKVLa~~LP~liSWiK~kr~ 25 (26)
T 3qrx_B 2 IGAVLKVLTTGLPALISWIKRKRQ 25 (26)
T ss_pred chHHHHHHHccchHHHHHHHHHhc
Confidence 456788887654 67888777664
No 15
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=27.19 E-value=49 Score=22.53 Aligned_cols=15 Identities=27% Similarity=0.029 Sum_probs=10.3
Q ss_pred EEeechhHHHHHHHH
Q psy11783 125 NLYDTDVFRVFYHGT 139 (189)
Q Consensus 125 ~~YD~~~l~~~~~~l 139 (189)
..||...||..=+.+
T Consensus 12 F~YDY~tLRigGLif 26 (74)
T 2zxe_G 12 FTYDYYRLRVVGLIV 26 (74)
T ss_dssp GCCCHHHHHHHHHHH
T ss_pred cccchHHheeccchh
Confidence 479999998753333
Done!