RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11783
         (189 letters)



>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
           family.  This family consists of several eukaryotic
           Organic-Anion-Transporting Polypeptides (OATPs). Several
           have been identified mostly in human and rat. Different
           OATPs vary in tissue distribution and substrate
           specificity. Since the numbering of different OATPs in
           particular species was based originally on the order of
           discovery, similarly numbered OATPs in humans and rats
           did not necessarily correspond in function, tissue
           distribution and substrate specificity (in spite of the
           name, some OATPs also transport organic cations and
           neutral molecules). Thus, Tamai et al. initiated the
           current scheme of using digits for rat OATPs and letters
           for human ones. Prostaglandin transporter (PGT) proteins
           are also considered to be OATP family members. In
           addition, the methotrexate transporter OATK is closely
           related to OATPs. This family also includes several
           predicted proteins from Caenorhabditis elegans and
           Drosophila melanogaster. This similarity was not
           previously noted. Note: Members of this family are
           described (in the Swiss-Prot database) as belonging to
           the SLC21 family of transporters.
          Length = 582

 Score =  120 bits (302), Expect = 7e-32
 Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 34  ASLGPCENDCVSVK-WYIILFSFFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIG 92
           AS G C +DC +   +++IL +   FI   S +   +++LRCV P +K++ALG+    I 
Sbjct: 481 ASKGYCPSDCCTQFLYFLILMAILSFIGFLSAIPLYMIVLRCVPPEEKSLALGVQWLLIR 540

Query: 93  LFGNVPCPIVYGAVVDSACLVWESVC-GEKGACNLYDTDVFR 133
           L G +P PI++GA++DS CL W + C G++GAC LYD D  R
Sbjct: 541 LLGFIPAPIIFGALIDSTCLKWGTSCCGKRGACRLYDNDSLR 582


>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter.  The
           Organo Anion Transporter (OAT) Family (TC
           2.A.60)Proteins of the OAT family catalyze the
           Na+-independent facilitated transport of organic anions
           such as bromosulfobromophthalein and prostaglandins as
           well as conjugated and unconjugated bile acids
           (taurocholate and cholate, respectively). These
           transporters have been characterized in mammals, but
           homologues are present in C. elegans and A. thaliana.
           Some of the mammalian proteins exhibit a high degree of
           tissue specificity. For example, the rat OAT is found at
           high levels in liver and kidney and at lower levels in
           other tissues. These proteins possess 10-12 putative
           a-helical transmembrane spanners. They may catalyze
           electrogenic anion uniport or anion exchange.
          Length = 633

 Score =  103 bits (259), Expect = 5e-26
 Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 12/152 (7%)

Query: 10  FSNCTCMSGMWGNGTILPDPLATTASLGPCENDCV-SVKWYIILFSFFVFIHSTSEVGSM 68
           ++NC+C+            P  ++A  G C   C  S+ +++ILF    FI   + V   
Sbjct: 491 YTNCSCV----------QTPGNSSAKKGLCNPSCATSLLYFLILFIPLSFIAFITAVPLY 540

Query: 69  LLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDSACLVWESVC-GEKGACNLY 127
           +++LR V+P ++++A+GL    + +FG +P PI++G ++D +CL W+++C G +GAC +Y
Sbjct: 541 MVLLRVVNPEERSLAIGLQWLCMRVFGTIPAPILFGLLIDVSCLHWQTLCCGARGACRMY 600

Query: 128 DTDVFRVFYHGTTGFILLLAFFVDTIVWYKAG 159
           D D  R  Y G T  +      +   +     
Sbjct: 601 DNDNLRNIYLGLTIALRGSGLLLLFFILILMK 632


>gnl|CDD|235815 PRK06489, PRK06489, hypothetical protein; Provisional.
          Length = 360

 Score = 30.3 bits (69), Expect = 0.48
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 161 INFADEETNTPEDDEMQAMTEKIK 184
           IN AD+E N PE   M+A  +++K
Sbjct: 298 INSADDERNPPETGVMEAALKRVK 321


>gnl|CDD|197224 cd09126, PLDc_C_DEXD_like, C-terminal putative phospholipase D-like
           domain of uncharacterized prokaryotic HKD family
           nucleases fused to DEAD/DEAH box helicases.  C-terminal
           putative phospholipase D (PLD)-like domain of
           uncharacterized prokaryotic HKD family nucleases fused
           to a DEAD/DEAH box helicase domain. All members of this
           subfamily are uncharacterized. In addition to the
           helicase-like region, members of this family also
           contain a PLD-like domain in the C-terminal region,
           which is characterized by a variant HKD (H-x-K-x(4)-D
           motif, where x represents any amino acid residue) motif.
           Due to the lack of key residues related to PLD activity
           in the variant HKD motif, members of this subfamily are
           most unlikely to carry PLD activity.
          Length = 126

 Score = 28.4 bits (64), Expect = 1.2
 Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 7/34 (20%)

Query: 146 LAFFVDTIVWYKAGSINFADEETNTPEDDEMQAM 179
            A     IVWY  GSIN          + E   +
Sbjct: 87  FAIIDKKIVWY--GSINLLGY-----SNAEDSII 113


>gnl|CDD|181618 PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.
          Length = 281

 Score = 27.7 bits (62), Expect = 4.0
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 4/22 (18%)

Query: 142 FI-LLLAFFVDTIVWYKAGSIN 162
           FI LL AFFV   V Y   S+N
Sbjct: 24  FITLLFAFFV---VMYAISSVN 42


>gnl|CDD|182831 PRK10910, PRK10910, hypothetical protein; Provisional.
          Length = 89

 Score = 25.7 bits (57), Expect = 7.0
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 5/41 (12%)

Query: 55 FFVFIHSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFG 95
          F V +H     G  L +L+   P D     GL Q  I LFG
Sbjct: 39 FMVLMH-----GLQLALLKSTQPKDGPQLSGLEQVRIFLFG 74


>gnl|CDD|226650 COG4187, RocB, Arginine degradation protein (predicted deacylase)
           [Amino acid transport and metabolism].
          Length = 553

 Score = 27.1 bits (60), Expect = 7.6
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 124 CNLYDTDVFRVFYHGTTGFILLLAFFV--DTIVWYKAGSIN 162
            +  D D  R  Y GT G +L   F V  +T V Y    +N
Sbjct: 208 SDQGDGDQGRYVYTGTIGKLLPFFFVVGCETHVGYPFEGVN 248


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0795    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,532,580
Number of extensions: 870824
Number of successful extensions: 1015
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1009
Number of HSP's successfully gapped: 32
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.2 bits)