RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11783
         (189 letters)



>4fev_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine,
           PP1, protein kinase inhibitor; HET: KAN PP1; 1.89A
           {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A*
           4ej7_A* 3r78_A*
          Length = 272

 Score = 26.9 bits (59), Expect = 4.5
 Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 60  HSTSEVGSMLLILRCVDPSDKAMALGLIQFAIGLFGNVPCPIVYGAVVDS--ACLVWESV 117
               +  +  L L+    S        +     L   +P P +   +     A L+  ++
Sbjct: 43  RLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAI 102

Query: 118 CGE 120
            G+
Sbjct: 103 PGK 105


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 5.0
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 47/101 (46%)

Query: 77  PSDKAMA--------LGLIQFA--------IGL-FGNVPCPIVYGAVVDSACLV------ 113
           P    +         +G+IQ A        +G   G +    + GA   S  LV      
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL-RSYLKGATGHSQGLVTAVAIA 284

Query: 114 ----WESVCGEKGACNLYDTDVFRVFYHGTTGFILLLAFFV 150
               WES                  F+      I +L FF+
Sbjct: 285 ETDSWES------------------FFVSVRKAITVL-FFI 306


>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
           2.80A {Staphylococcus aureus}
          Length = 514

 Score = 26.3 bits (59), Expect = 6.8
 Identities = 4/21 (19%), Positives = 7/21 (33%)

Query: 165 DEETNTPEDDEMQAMTEKIKP 185
                 P    M  ++E I+ 
Sbjct: 10  HSSGLVPRGSHMLEVSEIIQD 30


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,914,160
Number of extensions: 162825
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 7
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)