BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11784
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 8/179 (4%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWV-HVIPFPD 59
+EA + A+++AR TGR +V D AYHG NL + ++ +A + P+ V P
Sbjct: 135 AEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPM 194
Query: 60 TYRGEFSADDPQ-AAQKYAQAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLSLM 116
+Y F ++P+ + A+ A ++E D +A +I EP+ G +VP G+L +
Sbjct: 195 SY--PFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPAL 252
Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSR 175
++ E G V IADE+Q G R+G F A +G VPDIIT+ K + G+P+ A IT R
Sbjct: 253 SEWAKEKGIVFIADEVQSGFCRTGEWF-AVDHEGVVPDIITMAKGIAGGLPLSA-ITGR 309
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 12/187 (6%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA + A+++AR TGR +V D AYHG NL + ++ ++ S+ P+ P+
Sbjct: 135 AEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFA-----PEV 189
Query: 61 YRGEFS---ADDPQ-AAQKYAQAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLS 114
YR S D+P ++ A+ A + +E ++A +I EP+ G +VP PG+L+
Sbjct: 190 YRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLA 249
Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITS 174
+ + E G V IADE+Q G R+G+ F A + +G VPDI+T+ + GMP+ AV
Sbjct: 250 TLTAWASENGVVFIADEVQTGFARTGAWF-ASEHEGIVPDIVTMAXGIAGGMPLSAVTGR 308
Query: 175 RKIAESL 181
++ +++
Sbjct: 309 AELMDAV 315
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 15/184 (8%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVI-PFP- 58
+EA + A+++ARAYT RQ +VV D AYHG NL + ++++ +P+ H PF
Sbjct: 139 AEAVENAVKIARAYTRRQAVVVFDHAYHGRTNLTM-------AMTAKNQPYKHGFGPFAN 191
Query: 59 DTYRGEFS---ADDPQAAQKYAQAARNIM--EAHRDNIATLICEPVFVVHGAVVPPPGWL 113
+ YR S D A A +++ + DN+A ++ EPV G VVP PG+L
Sbjct: 192 EVYRVPTSYPFRDGETDGAAAAAHALDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFL 251
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
+ + + G V +ADE+Q G R+G+ F A + + VPD+I K + G+P+ AV
Sbjct: 252 GALQKWCTDNGAVFVADEVQTGFARTGALF-ACEHENVVPDLIVTAKGIAGGLPLSAVTG 310
Query: 174 SRKI 177
+I
Sbjct: 311 RAEI 314
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVI----- 55
SEA + A+++AR++T + +V D AYHG NL + ++ + P+ I
Sbjct: 132 SEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPL 191
Query: 56 --PFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
PF D G+ A D + A K A + + DN+A ++ EP+ G +VP G+L
Sbjct: 192 SYPFRDAEFGKELATDGELAAKRAITVID-KQIGADNLAAVVIEPIQGEGGFIVPADGFL 250
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
+ D+ + V IADE+Q G R+G+ F A + +G PD+I + G+P+ AV
Sbjct: 251 PTLLDWCRKNDVVFIADEVQTGFARTGAMF-ACEHEGIDPDLIVTAXGIAGGLPLSAVTG 309
Query: 174 SRKIAES 180
+I +S
Sbjct: 310 RAEIMDS 316
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 31/187 (16%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW------VHV 54
+EAN+ AL+ ARA+TGR+ V + G L ++ ++P+ V
Sbjct: 114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVT----WEPKYREPFLPLVEPVEF 169
Query: 55 IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLS 114
IP+ D + + D+ AA +I EPV G P +L
Sbjct: 170 IPYNDVEALKRAVDEETAA--------------------VILEPVQGEGGVRPATPEFLR 209
Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITS 174
+ E G ++I DEIQ GMGR+G F AF+ G VPDI+T+ K +G G+P+G +
Sbjct: 210 AAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDILTLAKALGGGVPLGVAVMR 268
Query: 175 RKIAESL 181
++A S+
Sbjct: 269 EEVARSM 275
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKP------WVHV 54
+E+N+ A+++A+ TG+ IV ++HG + + S+ +K
Sbjct: 110 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTG-----AAASATYSAGRKGVGPAAVGSFA 164
Query: 55 IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWL 113
IP P TYR F + A ++++ N+A I EP+ G + P G++
Sbjct: 165 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYM 224
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
+ + G ++I DE Q G+GR+G+ F A Q G PDI+T+ K +G G+P+ A++T
Sbjct: 225 AALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPDILTLSKTLGAGLPLAAIVT 283
Query: 174 SRKIAE 179
S I E
Sbjct: 284 SAAIEE 289
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKP------WVHV 54
+E+N+ A+++A+ TG+ IV ++HG + + S+ +K
Sbjct: 112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTG-----AAASATYSAGRKGVGPAAVGSFA 166
Query: 55 IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWL 113
IP P TYR F + A ++++ N+A I EP+ G + P G++
Sbjct: 167 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYM 226
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
+ + G ++I DE Q G+GR+G+ F A Q G PDI+T+ K +G G+P+ A++T
Sbjct: 227 AALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPDILTLSKTLGAGLPLAAIVT 285
Query: 174 SRKIAE 179
S I E
Sbjct: 286 SAAIEE 291
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKP------WVHV 54
+E+N+ A+++A+ TG+ IV ++HG + + S+ +K
Sbjct: 112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTG-----AAASATYSAGRKGVGPAAVGSFA 166
Query: 55 IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWL 113
IP P TYR F + A ++++ N+A I EP+ G + P G++
Sbjct: 167 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYM 226
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
+ + G ++I DE Q G+GR+G+ F A Q G PDI+T+ K +G G+P+ A++T
Sbjct: 227 AALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPDILTLSKTLGAGLPLAAIVT 285
Query: 174 SRKIAE 179
S I E
Sbjct: 286 SAAIEE 291
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKP------WVHV 54
+E+N+ A+++A+ TG+ IV ++HG + + S+ +K
Sbjct: 111 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTG-----AAASATYSAGRKGVGPAAVGSFA 165
Query: 55 IPFPDTYRGEF---SADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
IP P TYR F A D A YA I N+A I EP+ G + P G
Sbjct: 166 IPAPFTYRPRFERNGAYDYLAELDYAFDL--IDRQSSGNLAAFIAEPILSSGGIIELPDG 223
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
+++ + G ++I DE Q G+GR+G+ F A Q G PDI+T+ K +G G+P+ A+
Sbjct: 224 YMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPDILTLSKTLGAGLPLAAI 282
Query: 172 ITSRKIAE 179
+TS I E
Sbjct: 283 VTSAAIEE 290
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 7/186 (3%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW---VHVIPF 57
+EA + ++++ARA+T +Q +V D AYHG NL + ++ ++ S P+ ++ P
Sbjct: 149 AEAVENSIKVARAHTRKQAVVAFDYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPV 208
Query: 58 PDTYRGEF-SADDPQAAQKYAQAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLS 114
YR D + A+ A N+++ N+A +I EP+ G +VP G+L
Sbjct: 209 SYPYRDNLLDKDIATDGELAAERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLP 268
Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITS 174
+ + + V IADE+Q G R+G+ F A + PD+I + +G P+ AV
Sbjct: 269 ALQRWCRDNDVVFIADEVQTGFARTGAMF-ACDHENVEPDLIVTAXGIADGFPLSAVTGR 327
Query: 175 RKIAES 180
+I ++
Sbjct: 328 AEIMDA 333
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 31/191 (16%)
Query: 1 SEANDLALQLARAYTG------RQNIVVVDAAYHGTVNLLLDISPR-AFMLSSEKKPW-- 51
+EAN+ A +LAR Y + I+ A+HG + + + + KP
Sbjct: 124 TEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADI 183
Query: 52 VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
+HV PF D + A + +M+ D+ ++ EP+ G P
Sbjct: 184 IHV-PFNDLH-----------------AVKAVMD---DHTCAVVVEPIQGEGGVQAATPE 222
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
+L + D E +++ DE+QCGMGR+G F A+ G PDI+T K +G G P+ A+
Sbjct: 223 FLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDILTSAKALGGGFPVSAM 281
Query: 172 ITSRKIAESLN 182
+T+++IA + +
Sbjct: 282 LTTQEIASAFH 292
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA A++LAR YTGR I+ D YHG+ + A ++++ + +P
Sbjct: 122 TEATMTAIRLARGYTGRDLILKFDGCYHGSHD--------AVLVAAGSAAAHYGVP---- 169
Query: 61 YRGEFSADDPQAAQKYA--------QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
SA P+A + +A + + D IA +I EPV G + P +
Sbjct: 170 ----TSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREF 225
Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
L+ + E G ++I DE+ G +G G+ + F +G DII +GK +G G P+GA
Sbjct: 226 LAALQRLSRESGALLILDEVVTGFRLGLEGAQGY-FNIEG---DIIVLGKIIGGGFPVGA 281
Query: 171 VITSRKIAESLNCLDDNRPSGK 192
V SR++ L P GK
Sbjct: 282 VAGSREVMSLLT------PQGK 297
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 6/183 (3%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
S+AN+ A + TGR ++ AYHG + S + + K + ++P+PD
Sbjct: 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDP 173
Query: 61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
YR +DP + +I EP+ G +VPP G+L D
Sbjct: 174 YRP--YRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC 231
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAES 180
G +V+ DE++ G+ RSG F+ +G VPDI+ +GK +G G+P+ AVI AE
Sbjct: 232 RAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAP---AEI 287
Query: 181 LNC 183
L+C
Sbjct: 288 LDC 290
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 223 RMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMDSSPAI 276
R + ++V G GNVL F P + +T ++ + L+R F+ L S+ I
Sbjct: 380 RAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAVSNEEI 433
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 6/183 (3%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
S+AN+ A + TGR ++ AYHG + S + + K + ++P+PD
Sbjct: 127 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDP 186
Query: 61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
YR +DP + +I EP+ G +VPP G+L D
Sbjct: 187 YRP--YRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC 244
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAES 180
G +V+ DE++ G+ RSG F+ +G VPDI+ +GK +G G+P+ AVI AE
Sbjct: 245 RAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAP---AEI 300
Query: 181 LNC 183
L+C
Sbjct: 301 LDC 303
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 223 RMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMDSSPAI 276
R + ++V G GNVL F P + +T ++ + L+R F+ L S+ I
Sbjct: 393 RAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAVSNEEI 446
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVN-LLLDISPRAFMLSSEKKPWVHVIPFPD 59
+EA AL+LAR YTGR IV YHG + LL++ A L V P+
Sbjct: 118 TEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGV-----PE 172
Query: 60 TYRG---EFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLM 116
Y +DP+ R +++ + IA +I EPV G +VP +L +
Sbjct: 173 EYAKLTLVLEYNDPEGL-------REVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKAL 225
Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRK 176
++ G ++IADE+ G + A + G PD++T+GK +G G+P A R+
Sbjct: 226 HE-AKAYGVLLIADEVMTGF--RLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRRE 282
Query: 177 IAESLNCLDDNRPSGKYLVRPLGI 200
I E + L +G PL +
Sbjct: 283 IMEKVAPLGPVYQAGTLSGNPLAM 306
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA L+L RAYTGR I+ + YHG ++ F++ + +P
Sbjct: 123 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHADM--------FLVKAGSGVATLGLPSSPG 174
Query: 61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
+ +A+ +A + + + IA +I EP+ G +VP G+L + +
Sbjct: 175 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 234
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
E +++ DE+ G + + Q + G PD+ T+GK +G G+P+GA R+I +
Sbjct: 235 LEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQ 291
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLS-ITY-YLYRYTRRMKEAKIIVANE 234
+ +G PL + I +L TY YL + T+R+ + + +A E
Sbjct: 292 LVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 348
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW----VHVIP 56
+EA + ++++ + TGR+ I+ +HG + ++ + S P+ +HV P
Sbjct: 114 TEAIEASIKVVKN-TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHV-P 171
Query: 57 FPDTYRGEFSADDPQAAQKYAQAARNIMEAH-------RDNIATLICEPVFVVHGAVVPP 109
+P+ YR + + + + +E + + +A + EP+ G V+PP
Sbjct: 172 YPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPP 231
Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPI 168
+ + + + G +++ DE+Q G+GR+G F A + VPD+IT+ K +G G MPI
Sbjct: 232 KNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLF-AIENFNTVPDVITLAKALGGGIMPI 290
Query: 169 GAVITSRKI 177
GA I + +
Sbjct: 291 GATIFRKDL 299
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK---PWVHVIPF 57
SEA + A+++ARA T R + AYHG + L ++ + S+ V+ +
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY 171
Query: 58 PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
P G S DD A + +N +A ++IA ++ EPV G P ++ +
Sbjct: 172 PCPLHG-ISEDD--AIASIHRIFKN--DAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLR 226
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
E G ++IADE+Q G GR+G+ F A + G PD+ T K + G P+ A +T R
Sbjct: 227 ALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIAGGFPL-AGVTGR-- 282
Query: 178 AESLNCLDDNRPSGKYLVRPL 198
AE ++ + G Y P+
Sbjct: 283 AEVMDAVAPGGLGGTYAGNPI 303
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA +++ARAYTGR I YHG +L+L V P T
Sbjct: 121 TEAVXTTIRVARAYTGRTKIXKFAGCYHGHSDLVL----------------VAAGSGPST 164
Query: 61 YRGEFSADDPQA-AQKYAQAARNIMEAHRD-------NIATLICEPVFVVHGAVVPPPGW 112
SA PQ+ AQ+ N +E ++ +A ++ EP+ G V P PG+
Sbjct: 165 LGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGF 224
Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVI 172
L + + +HE G +VI DE+ + A G PD+ +G +G G+PIGA
Sbjct: 225 LEKVNELVHEAGALVIYDEVITAF--RFXYGGAQDLLGVTPDLTALGXVIGGGLPIGAYG 282
Query: 173 TSRKIAESLNCLDDNRPSGKYLVRP 197
++I E + L +G P
Sbjct: 283 GKKEIXEQVAPLGPAYQAGTXAGNP 307
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA L+L RAYTGR I+ + YHG ++ F++ + +P
Sbjct: 118 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHADM--------FLVKAGSGVATLGLPSSPG 169
Query: 61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
+ +A+ +A + + + IA +I EP+ G +VP G+L + +
Sbjct: 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 229
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
E +++ DE+ G + + Q + G PD+ T+GK +G G+P+GA R+I +
Sbjct: 230 LEHDALLVFDEVITGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQ 286
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLS-ITY-YLYRYTRRMKEAKIIVANE 234
+ +G PL + I +L TY YL + T+R+ + + +A E
Sbjct: 287 LVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 343
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA L++ RAYTGR I+ + YHG ++ F++ + +P
Sbjct: 118 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADM--------FLVKAGSGVATLGLPSSPG 169
Query: 61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
+ +A+ +A + + + IA +I EP+ G +VP G+L + +
Sbjct: 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 229
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
E +++ DE+ G + + Q + G PD+ T+GK +G G+P+GA R+I +
Sbjct: 230 LEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQ 286
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLS-ITY-YLYRYTRRMKEAKIIVANE 234
+ +G PL + I +L TY YL + T+R+ + + +A E
Sbjct: 287 LVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 343
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA L++ RAYTGR I+ + YHG ++ F++ + +P
Sbjct: 123 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADM--------FLVKAGSGVATLGLPSSPG 174
Query: 61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
+ +A+ +A + + + IA +I EP+ G +VP G+L + +
Sbjct: 175 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 234
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
E +++ DE+ G + + Q + G PD+ T+GK +G G+P+GA R+I +
Sbjct: 235 LEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQ 291
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLS-ITY-YLYRYTRRMKEAKIIVANE 234
+ +G PL + I +L TY YL + T+R+ + + +A E
Sbjct: 292 LVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 348
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK---PWVHVIPF 57
SEA + A+++ARA T R + AYHG + L ++ + S+ V+ +
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY 171
Query: 58 PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
P G S DD A + +N +A ++IA ++ EPV G P ++ +
Sbjct: 172 PCPLHG-ISEDD--AIASIHRIFKN--DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLR 226
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
E G ++IADE+Q G GR+G+ F A + G PD+ T K + G P+ A +T R
Sbjct: 227 ALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIAGGFPL-AGVTGR-- 282
Query: 178 AESLNCLDDNRPSGKYLVRPL 198
AE ++ + G Y P+
Sbjct: 283 AEVMDAVAPGGLGGTYAGNPI 303
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK---PWVHVIPF 57
SEA + A+++ARA T R + AYHG + L ++ + S+ V+ +
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY 171
Query: 58 PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
P G S DD A + +N +A ++IA ++ EPV G P ++ +
Sbjct: 172 PCPLHG-ISEDD--AIASIHRIFKN--DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLR 226
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
E G ++IADE+Q G GR+G+ F A + G PD+ T K + G P+ A +T R
Sbjct: 227 ALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIAGGFPL-AGVTGR-- 282
Query: 178 AESLNCLDDNRPSGKYLVRPL 198
AE ++ + G Y P+
Sbjct: 283 AEVMDAVAPGGLGGTYAGNPI 303
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVN-LLLDISPRAFMLSSEKKPWVHVIPFPD 59
+EA A++LAR YTGR I+ + YHG + LL+ A L P V
Sbjct: 119 TEATXSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPT----- 173
Query: 60 TYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDY 119
+F+ + R E + +A +I EPV + P P +L +
Sbjct: 174 ----DFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNXNCIPPLPEFLPGLRAL 229
Query: 120 IHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
E G ++I DE+ G + +G+ + +PD+ +GK +G G P+GA R++
Sbjct: 230 CDEFGALLIIDEVXTGFRVALAGAQDYYH----VIPDLTCLGKIIGGGXPVGAFGGRREV 285
Query: 178 AESL 181
+L
Sbjct: 286 XNAL 289
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 32/181 (17%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA AL+LAR YTGR I+ YHG + LL + V + PD
Sbjct: 119 TEATXSALRLARGYTGRNKILKFIGCYHGHGDSLL----------IKAGSGVATLGLPD- 167
Query: 61 YRGEFSADDPQAAQKYA--------QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
S P+ K ++ + E D+IA +I EPV G V P PG+
Sbjct: 168 -----SPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNXGVVPPQPGF 222
Query: 113 LSLMYDYIHEIGGVVIADEIQCGMG---RSGSHFWAFQTQGAVPDIITVGKPMGNGMPIG 169
L + + + G ++I DE+ G G ++ G PD+ +GK +G G+P+G
Sbjct: 223 LEGLREVTEQNGALLIFDEVXTGFRVAYNCGQGYY-----GVTPDLTCLGKVIGGGLPVG 277
Query: 170 A 170
A
Sbjct: 278 A 278
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA L++ RAYTGR I+ + YHG ++ F++ + +P
Sbjct: 118 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADM--------FLVKAGSGVATLGLPSSPG 169
Query: 61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
+ +A+ +A + + + IA +I EP+ G +VP G+L + +
Sbjct: 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 229
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
E +++ DE+ G + + Q + G PD+ T+GK +G G+P+GA R+I +
Sbjct: 230 LEHDALLVFDEVITGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQ 286
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLS-ITY-YLYRYTRRMKEAKIIVANE 234
+ +G PL + I +L TY YL + T+R+ + + +A E
Sbjct: 287 LVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 343
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 41/249 (16%)
Query: 1 SEANDLALQLARAYTGRQ-----NIVVVDAAYHGTV--NLLLDISPRAFMLSSEKKPWVH 53
+EAN+ A+++AR Y ++ I+ ++HG +L P+ +KP+
Sbjct: 95 TEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKY------QKPFEP 148
Query: 54 VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
++P + + EF+ ++ +++ + EP+ G V +L
Sbjct: 149 LVPGFEYF--EFNN------------VEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFL 194
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
E +++ DE+QCGMGR+G F A+Q G VPD++T K +G G+PIGAVI
Sbjct: 195 EEARKLCDEYDALLVFDEVQCGMGRTGKLF-AYQKYGVVPDVLTTAKGLGGGVPIGAVI- 252
Query: 174 SRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITY---------YLYRYTRRM 224
+ E N L+ + PL + L + YL + + M
Sbjct: 253 ---VNERANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEM 309
Query: 225 KEAKIIVAN 233
KE +VA+
Sbjct: 310 KEEYDVVAD 318
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 12/201 (5%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK---PWVHVIPF 57
SEA + A+++ARA T R + AYHG + L ++ + S+ V+ +
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY 171
Query: 58 PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
P G S DD A + +N +A ++IA ++ EPV G P ++ +
Sbjct: 172 PCPLHG-ISEDD--AIASIHRIFKN--DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLR 226
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
E G ++IADE Q G GR+G+ F A + G PD+ T K + G P+ A +T R
Sbjct: 227 ALCDEHGIMLIADEAQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIAGGFPL-AGVTGR-- 282
Query: 178 AESLNCLDDNRPSGKYLVRPL 198
AE ++ + G Y P+
Sbjct: 283 AEVMDAVAPGGLGGTYAGNPI 303
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 31/187 (16%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHV 54
+EAN+ AL+LAR + + + IV A+HG F +S+ +P
Sbjct: 106 AEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRT---------LFTVSAGGQP---- 152
Query: 55 IPFPDTYRGEFS---ADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
Y +F+ AD AA +A +++ D+ +I EP+ G V
Sbjct: 153 -----AYSQDFAPLPADIRHAAYNDINSASALID---DSTCAVIVEPIQGEGGVVPASNA 204
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
+L + + + ++I DE+Q G+GR+G +A+ G PD++T K +G G P+GA+
Sbjct: 205 FLQGLRELCNRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPDLLTTAKALGGGFPVGAL 263
Query: 172 ITSRKIA 178
+ + + A
Sbjct: 264 LATEECA 270
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 26/189 (13%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA AL+LAR YTGR I+ + YHG + LL + V + PD
Sbjct: 127 TEATMSALRLARGYTGRNKILKFEGCYHGHGDSLL----------IKAGSGVATLGLPD- 175
Query: 61 YRGEFSADDPQAAQKYA--------QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
S P+ K ++ + + ++IA +I EPV G V P G+
Sbjct: 176 -----SPGVPEGIAKNTITVPYNDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQEGF 230
Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVI 172
L + D + G ++I DE+ G + A G PD+ +GK +G G+P+GA
Sbjct: 231 LQGLRDITEQYGSLLIFDEVMTGF--RVDYNCAQGYFGVTPDLTCLGKVIGGGLPVGAYG 288
Query: 173 TSRKIAESL 181
+I E +
Sbjct: 289 GKAEIMEQI 297
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 12/188 (6%)
Query: 1 SEANDLALQLARAYTGRQN------IVVVDAAYHGTVNLLLDISPRAFM-LSSEKKPWVH 53
SEAND +++ R Y + I+ AYHG+ + A M S P VH
Sbjct: 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVH 185
Query: 54 VIPFPDTYRGEFSADDPQ--AAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
I P+ + E DP+ + + I+E + +A I EPV G +V P
Sbjct: 186 HINQPNWW-AEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDS 244
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGA 170
+ + + ++IADE+ CG GR+G+ F QT G P I+T+ K + +G PIG
Sbjct: 245 YWPEIQRICDKYDILLIADEVICGFGRTGNWF-GTQTMGIRPHIMTIAKGLSSGYAPIGG 303
Query: 171 VITSRKIA 178
I ++A
Sbjct: 304 SIVCDEVA 311
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 25/199 (12%)
Query: 1 SEANDLALQLARAYTG------RQNIVVVDAAYHGTVNLLLDI---SPRAFMLSSEKKPW 51
SEAN+ A ++AR Y R YHG + R + +
Sbjct: 117 SEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGNTXATXAATGQAQRRYQYEPFASGF 176
Query: 52 VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR-------DNIATLICEPVFVVHG 104
+HV P PD YR P ++ + E R + IA I EP+ G
Sbjct: 177 LHVTP-PDCYR------XPGIERENIYDVECVKEVDRVXTWELSETIAAFIXEPIITGGG 229
Query: 105 AVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGN 164
+ P + +++ + G ++I+DE+ CG GR+G F F PDIIT K + +
Sbjct: 230 ILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAF-GFXNYDVKPDIITXAKGITS 288
Query: 165 G-MPIGAVITSRKIAESLN 182
+P+ A R+I E+
Sbjct: 289 AYLPLSATAVKREIYEAFK 307
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 28/183 (15%)
Query: 1 SEANDLALQLARAYTGRQ-----NIVVVDAAYHGTV--NLLLDISPRAFMLSSEKKPWVH 53
+EAN+ A+++AR Y ++ I+ ++HG +L P+ +KP+
Sbjct: 107 TEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKY------QKPFEP 160
Query: 54 VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
++P + + EF+ ++ +++ + EP+ G V +L
Sbjct: 161 LVPGFEYF--EFNN------------VEDLRRKXSEDVCAVFLEPIQGESGIVPATKEFL 206
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
E +++ DE+QCG GR+G F A+Q G VPD++T K +G G+PIGAVI
Sbjct: 207 EEARKLCDEYDALLVFDEVQCGXGRTGKLF-AYQKYGVVPDVLTTAKGLGGGVPIGAVIV 265
Query: 174 SRK 176
+ +
Sbjct: 266 NER 268
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 82 NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS 141
I+E D +A + EP+ G +VPP + + + +++ADE+ CG GR+G
Sbjct: 211 KILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE 270
Query: 142 HFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAESL 181
F Q G PD+ T K + +G +PIGAV +++AE L
Sbjct: 271 WF-GHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGL 310
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 24/195 (12%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDIS---PRAFMLSSEKKP- 50
SEA + A++LAR Y GR ++ +YHG L S R + + +P
Sbjct: 99 SEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPE 158
Query: 51 -WVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR-DNIATLICEPVF-VVHGAVV 107
W +P PD R A+D A+ R ++E + +A + EPV A+
Sbjct: 159 AWPK-LPKPDPARN--GAED-------AEGLRALLEREGPETVAAFMAEPVVGASDAALA 208
Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-M 166
P PG+ + D E G + IADE+ GMGR GS + G PDI +GK + G
Sbjct: 209 PAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYA 268
Query: 167 PIGAVITSRKIAESL 181
P+ ++ + ++ E++
Sbjct: 269 PLAGLLAAPQVYETV 283
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 16/238 (6%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA L+L RAYT R+ ++ + YHG ++ L + V + PD+
Sbjct: 102 TEACMAVLRLMRAYTQREKVIKFEGCYHGHADMFL----------VKAGSGVATLGLPDS 151
Query: 61 YRGEFSADDPQAAQKYA--QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYD 118
+ Y +A + E + ++IA +I EPV G + P G+L + +
Sbjct: 152 PGVPKATTAATLTAPYNDLEAVSRLFEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRE 211
Query: 119 YIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIA 178
+ G +++ DE+ G ++ A + G PD+ T+GK +G G+P+GA +I
Sbjct: 212 LTKQYGALLVFDEVMTGF--RIAYGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRAEIM 269
Query: 179 ESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYY--LYRYTRRMKEAKIIVANE 234
+ + +G PL + I IL Y L R T ++ + + A E
Sbjct: 270 KMVAPAGPVYQAGTLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLVQGLLDAARE 327
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 23/208 (11%)
Query: 1 SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
S A ++A+++A Y RQ + YHG T + P M S K P
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53 HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
P P + GE+ D + +M AHR IA +I EP+ G + + P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
WL + G ++IADEI G GR+G F A + PDI+ +GK + G M +
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
A +T+R++AE+++ N +G ++ P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 23/208 (11%)
Query: 1 SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
S A ++A+++A Y RQ + YHG T + P M S K P
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53 HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
P P + GE+ D + +M AHR IA +I EP+ G + + P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
WL + G ++IADEI G GR+G F A + PDI+ +GK + G M +
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
A +T+R++AE+++ N +G ++ P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 82 NIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG 140
++E H NIA + EP+ G +VPP G+L + ++ +++ DE+ G GR+G
Sbjct: 210 KLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG 269
Query: 141 SHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAESLNCLDDNRPSGKYLVR 196
S F A + G PD++ + K + NG +P+GAVI S +I ++ N+P+ +Y V
Sbjct: 270 SMFGA-DSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFM----NQPTPEYAVE 321
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 82 NIMEAHRDNIATLICEPVFVVHGAV-VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG 140
+M AHR IA +I EP+ G + + P WL + G ++IADEI G GR+G
Sbjct: 196 RLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 141 SHFWAFQTQGAVPDIITVGKPM-GNGMPIGAVITSRKIAESLN 182
F A + PDI+ +GK + G M + A +T+R++AE+++
Sbjct: 256 KLF-ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETIS 297
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EAN +AL A +TGR+ IVV YHG V L +P +PF
Sbjct: 153 TEANLMALTAALHFTGRRKIVVFSGGYHGGV------------LGFGARPSPTTVPF--- 197
Query: 61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
D AQ AR +E H IA ++ EP+ G + P +L + +
Sbjct: 198 -------DFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESA 250
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
++G +++ DE+ R H A G D+ T+GK +G GM GA
Sbjct: 251 TQVGALLVFDEVMT--SRLAPHGLA-NKLGIRSDLTTLGKYIGGGMSFGA 297
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 1 SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
S A ++A+++A Y RQ + YHG T + P M S K P
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGNTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53 HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
P P + GE+ D + +M AHR IA +I EP+ G + + P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
WL + G ++IADEI G GR+G F A + PDI+ +G + G M +
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
A +T+R++AE+++ N +G ++ P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 1 SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
S A ++A+++A Y RQ + YHG T + P M S K P
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53 HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
P P + GE+ D + +M AHR IA +I EP+ G + + P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
WL + G ++IADEI G GR+G F A + PDI+ +G + G M +
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
A +T+R++AE+++ N +G ++ P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 1 SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
S A ++A+++A Y RQ + YHG T + P M S K P
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53 HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
P P + GE+ D + +M AHR IA +I EP+ G + + P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
WL + G ++IADEI G G +G F A + PDI+ +GK + G M +
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGATGKLF-ACEHAEIAPDILCLGKALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
A +T+R++AE+++ N +G ++ P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 82 NIMEAHRDNIATLICEPVFVVHGAV-VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG 140
+M AHR IA +I EP+ G + + P WL + G ++IADEI G GR+G
Sbjct: 196 RLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 141 SHFWAFQTQGAVPDIITVGKPM-GNGMPIGAVITSRKIAESLNCLDDNRPSGKYLVRP 197
F A + PDI+ +G + G M + A +T+R++AE+++ N +G ++ P
Sbjct: 256 KLF-ACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETIS----NGEAGCFMHGP 308
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 1 SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
S A ++A+++A Y RQ + YHG T + P M S K P
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53 HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
P P + GE+ D + +M AHR IA +I EP+ G + + P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
WL + G ++IADEI G G++G F A + PDI+ +G + G M +
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGKTGKLF-ACEHAEIAPDILCLGXALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
A +T+R++AE+++ N +G ++ P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 126 VVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLD 185
++IADEIQCG GRSG F+A++ +PDI T K +G G+ +GA + ++K+A N L+
Sbjct: 215 LLIADEIQCGXGRSGK-FFAYEHAQILPDIXTSAKALGCGLSVGAFVINQKVAS--NSLE 271
Query: 186 DNRPSGKYLVRPL---GIN 201
Y PL G+N
Sbjct: 272 AGDHGSTYGGNPLVCAGVN 290
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT 148
+ A +I E + G +LS + + E ++I DE+Q G+GR+G F+A+Q
Sbjct: 171 EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQH 229
Query: 149 QGAVPDIITVGKPMGNGMPIGAVITSRKIAESL 181
PD+I + K +G G+PIGA++ ++A+S
Sbjct: 230 FNLKPDVIALAKGLGGGVPIGAILAREEVAQSF 262
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 13/193 (6%)
Query: 1 SEANDLALQL------ARAYTGRQNIVVVDAAYHG--TVNLLLDISPRAFMLSSEKKPWV 52
SEAND +++ A ++ I+ AYHG V+ + P + +V
Sbjct: 132 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFV 191
Query: 53 HVIPFPDTYR-GEFSADDPQAAQKYAQA-ARNIMEAHRDNIATLICEPVFVVHGAVVPPP 110
H+ P +R GE + Q + A+ I D IA EPV G + P
Sbjct: 192 HLT-CPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAK 250
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIG 169
G+ + + + VI+DE+ CG GR+G+ W T PD I K + G P+G
Sbjct: 251 GYFQAILPILRKYDIPVISDEVICGFGRTGNT-WGCVTYDFTPDAIISSKNLTAGFFPMG 309
Query: 170 AVITSRKIAESLN 182
AVI ++++ L
Sbjct: 310 AVILGPELSKRLE 322
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 35/199 (17%)
Query: 1 SEANDLALQLARAYTG------RQNIVVVDAAYHGTVNLLLDISPRA-----FMLSSEKK 49
S A D AL+ + Y ++ I+V YHG+ L + R F ++ ++
Sbjct: 124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDR- 182
Query: 50 PWVHVIPFPDTYRGEFSADDPQAAQKYAQAA----------RNIMEAHRDNIATLICEPV 99
I F S+ +P+ A +Q A I D IA + EP+
Sbjct: 183 -----ISF-------LSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPI 230
Query: 100 FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG 159
G ++PP G+ + + + I+DE+ G GR G F + + G VPDIIT
Sbjct: 231 LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA 290
Query: 160 KPMGNG-MPIGAVITSRKI 177
K + +G +P+G + S +
Sbjct: 291 KGVTSGYVPLGGLAISEAV 309
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLLLDISPRAF-------MLSS 46
+EA ++AL++A Y +Q + + YHG T+ + S F M S
Sbjct: 114 AEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFES 173
Query: 47 EKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEP-VFVVHGA 105
K P IP+ YR E S D + + + ++E H + IA L E V G
Sbjct: 174 YKAP----IPY--VYRSE-SGDPDECRDQXLRELAQLLEEHHEEIAALSIESMVQGASGM 226
Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
+V P G+L+ + + ++I DE+ G GR+G F A + + PD++ GK + G
Sbjct: 227 IVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPDLMAAGKGITGG 285
Query: 166 -MPIGAVITSRKIAESL 181
+PI + I ++
Sbjct: 286 YLPIAVTFATEDIYKAF 302
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 1 SEANDLALQLARAY--------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWV 52
+EAN+ A +L R + IVV + G + S+ KK
Sbjct: 132 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGR-------TLGCISASTTKKCTS 184
Query: 53 HVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
+ PF + + DD +A ++ E N+ I EP+ G +VP +
Sbjct: 185 NFGPFAPQF-SKVPYDDLEALEE---------ELKDPNVCAFIVEPIQGEAGVIVPSDNY 234
Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAV 171
L +YD + + +ADE+Q G+GR+G PD+I +GK + G PI AV
Sbjct: 235 LQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYNVKPDVILLGKALSGGHYPISAV 293
Query: 172 ITSRKI 177
+ + I
Sbjct: 294 LANDDI 299
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLLLDISPRAF-------MLSS 46
+EA ++AL++A Y +Q + + YHG T+ + S F M S
Sbjct: 114 AEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFES 173
Query: 47 EKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEP-VFVVHGA 105
K P IP+ YR E S D + + + ++E H + IA L E V G
Sbjct: 174 YKAP----IPY--VYRSE-SGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGM 226
Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
+V P G+L+ + + ++I DE+ G GR+G F A + + PD++ GK + G
Sbjct: 227 IVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPDLMAAGKGITGG 285
Query: 166 -MPIGAVITSRKIAESL 181
+PI + I ++
Sbjct: 286 YLPIAVTFATEDIYKAF 302
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 13/193 (6%)
Query: 1 SEANDLALQL------ARAYTGRQNIVVVDAAYHGTVNLLLDIS--PRAFMLSSEKKPWV 52
SEAND +++ A ++ I+ AYHG + ++ P + +V
Sbjct: 138 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGATAVSASMTGFPYNSVFGLPLPGFV 197
Query: 53 HVIPFPDTYR-GEFSADDPQAAQKYAQA-ARNIMEAHRDNIATLICEPVFVVHGAVVPPP 110
H+ P +R GE + Q + A+ I D IA EPV G + P
Sbjct: 198 HLT-CPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAK 256
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIG 169
G+ + + + VI+DE+ CG GR+G+ W T PD I + G P+G
Sbjct: 257 GYFQAILPILRKYDIPVISDEVVCGFGRTGNT-WGCVTYDFTPDAIISSXNLTAGFFPMG 315
Query: 170 AVITSRKIAESLN 182
AVI ++++ L
Sbjct: 316 AVILGPELSKRLE 328
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 80/201 (39%), Gaps = 29/201 (14%)
Query: 1 SEANDLA------LQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHV 54
SEAND L A ++ I+ AYHG A S KP+ V
Sbjct: 138 SEANDTXVKXLWFLHAAEGKPQKRKILTRWNAYHGVT---------AVSASXTGKPYNSV 188
Query: 55 --IPFPD------TYRGEFSADDPQAAQKYAQAARNIMEAHR----DNIATLICEPVFVV 102
+P P + + + Q A+ AR + E + D IA EPV
Sbjct: 189 FGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVXGA 248
Query: 103 HGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM 162
G + P G+ + + + VI+DE+ CG GR+G+ W T PD I K +
Sbjct: 249 GGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT-WGCVTYDFTPDAIISSKNL 307
Query: 163 GNG-MPIGAVITSRKIAESLN 182
G P GAVI ++++ L
Sbjct: 308 TAGFFPXGAVILGPELSKRLE 328
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 27/188 (14%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTV-NLLLDISPRAFMLSSEKKPWVHVIPFPD 59
+EAN +AL A A TGR+ ++ D YHG + N +P P+ V+ +
Sbjct: 166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAP-------TNAPYHVVLGVYN 218
Query: 60 TYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDY 119
G +AD +++ H + A ++ EP+ G V +L L+
Sbjct: 219 DVEG--TAD--------------LLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAE 262
Query: 120 IHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
G ++I DE+ G A + G D+ T+GK +G GM GA R + E
Sbjct: 263 ASRCGALLIFDEVMTSRLSGGG---AQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLME 319
Query: 180 SLNCLDDN 187
+ D
Sbjct: 320 RFDPARDG 327
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ 149
N+A + EP+ G VVP PG+L + + + IADEIQ G+ R+G + A +
Sbjct: 223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE 281
Query: 150 GAVPDIITVGKPMGNGM-PIGAVITSRKI 177
PDI+ +GK + G+ P+ AV+ I
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDI 310
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ 149
N+A + EP+ G VVP PG+L + + + IADEIQ G+ R+G + A +
Sbjct: 223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE 281
Query: 150 GAVPDIITVGKPMGNGM-PIGAVITSRKI 177
PDI+ +GK + G+ P+ AV+ I
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDI 310
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ 149
N+A + EP+ G VVP PG+L + + + IADEIQ G+ R+G + A +
Sbjct: 223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE 281
Query: 150 GAVPDIITVGKPMGNGM-PIGAVITSRKI 177
PDI+ +GK + G+ P+ AV+ I
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDI 310
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ 149
N+A + EP+ G VVP PG+L + + + IADEIQ G+ R+G + A +
Sbjct: 186 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE 244
Query: 150 GAVPDIITVGKPMGNGM-PIGAVITSRKI 177
PDI+ +GK + G+ P+ AV+ I
Sbjct: 245 NVRPDIVLLGKALSGGLYPVSAVLCDDDI 273
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 1 SEANDLALQL------ARAYTGRQNIVVVDAAYHG--TVNLLLDISPRAFMLSSEKKPWV 52
SEAND +++ A ++ I+ AYHG V+ + P + ++
Sbjct: 130 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFI 189
Query: 53 HVIPFPDTYRGEFSADDPQAAQKYAQAARN----IMEAHRDNIATLICEPVFVVHGAVVP 108
H+ P +R + + AQ A+ AR I D IA EPV G + P
Sbjct: 190 HLT-CPHYWR--YGEEGETEAQFVARLARELEDTITREGADTIAGFFAEPVMGAGGVIPP 246
Query: 109 PPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MP 167
G+ + + + +I+DE+ CG GR+G+ W T +PD I + G P
Sbjct: 247 AKGYFQAILPILRKYDIPMISDEVICGFGRTGNT-WGCLTYDFMPDAIISSXNLTAGFFP 305
Query: 168 IGAVITSRKIAESLNC 183
+GAVI +A+ +
Sbjct: 306 MGAVILGPDLAKRVEA 321
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 78/193 (40%), Gaps = 42/193 (21%)
Query: 1 SEANDLALQLARAYT--------GRQNIVVVDAAYHGTVNLLLDIS-----PRAF--MLS 45
+EA + A++ AR + R I+V + +HG + +S R F ML
Sbjct: 103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPML- 161
Query: 46 SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA 105
P + VIP+ D + A N A I EP+ G
Sbjct: 162 ----PGIIVIPYGDL--------------------EALKAAITPNTAAFILEPIQGEAGI 197
Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
+PP G+L + + + +ADEIQ G+GR+G F A PD+ +G +G G
Sbjct: 198 NIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-ACDWDNVTPDMYILGXALGGG 256
Query: 166 M-PIGAVITSRKI 177
+ PI +R I
Sbjct: 257 VFPISCAAANRDI 269
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT 148
D IA I EP+ G V PP G+ + +++ +++ADE+ G GR G+ F +
Sbjct: 219 DTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTXFGS-DH 277
Query: 149 QGAVPDIITVG-KPMGNG-MPIGAVITSRKIAESL-NCLDDNRPSGK---YLVRPLG 199
G PDIIT+ K + + P+ I S K+ + L D+N P G Y P+G
Sbjct: 278 YGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHPIG 334
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 45 SSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHG 104
S++KK + PF + + DD +A +K E N+ I EPV G
Sbjct: 158 STDKKCKNNFGPFVPNFL-KVPYDDLEALEK---------ELQDPNVCAFIVEPVQGEAG 207
Query: 105 AVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGN 164
+VP + + + + +ADE+Q G+GR+G G PD+I +GK +
Sbjct: 208 VIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGK-LLCTHHYGVKPDVILLGKALSG 266
Query: 165 G-MPIGAVITSRKI 177
G PI A++ + +
Sbjct: 267 GHYPISAILANDDV 280
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG 137
+ AR E +IA + EP+ G P + + M + E ++I DE+Q G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 138 RSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
+G+ WA+Q PDI+ GK + V+ R++ E
Sbjct: 279 LTGTA-WAYQQLDVAPDIVAFGKK----TQVCGVMAGRRVDE 315
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 16/186 (8%)
Query: 3 ANDLALQL--ARAYTGRQNIVVVDAAYHGTVNLLLDI-SPRAFMLSSEKKPWVHVIPFPD 59
A +ALQ R G++ ++ YHG L + I P M S W V+
Sbjct: 156 AAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL----WTDVLA-AQ 210
Query: 60 TYRGEFSAD-DPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPPGWLSLMY 117
+ + D DP Y+ A + H +A ++ EPV G + P +L +
Sbjct: 211 VFAPQVPRDYDP----AYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLR 266
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRK 176
D ++I DEI G GR+G+ F A G PDI+ VGK + G + + A + +
Sbjct: 267 DICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGGYLSLAATLCTAD 325
Query: 177 IAESLN 182
+A +++
Sbjct: 326 VAHTIS 331
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 16/186 (8%)
Query: 3 ANDLALQL--ARAYTGRQNIVVVDAAYHGTVNLLLDI-SPRAFMLSSEKKPWVHVIPFPD 59
A +ALQ R G++ ++ YHG L + I P M S W V+
Sbjct: 131 AAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL----WTDVLA-AQ 185
Query: 60 TYRGEFSAD-DPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPPGWLSLMY 117
+ + D DP Y+ A + H +A ++ EPV G + P +L +
Sbjct: 186 VFAPQVPRDYDP----AYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLR 241
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRK 176
D ++I DEI G GR+G+ F A G PDI+ VGK + G + + A + +
Sbjct: 242 DICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGGYLSLAATLCTAD 300
Query: 177 IAESLN 182
+A +++
Sbjct: 301 VAHTIS 306
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 3 ANDLALQL--ARAYTGRQNIVVVDAAYHGTVNLLLDI-SPRAFMLSSEKKPWVHVIPFPD 59
A +ALQ R G++ ++ YHG L + I P M S + D
Sbjct: 151 AAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL----------WTD 200
Query: 60 TYRGEFSADDPQAAQKYAQAARNIMEA----HRDNIATLICEPVFVVHGAV-VPPPGWLS 114
+ A PQ + Y A EA H +A ++ EPV G + P +L
Sbjct: 201 VLAAQVFA--PQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLH 258
Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVIT 173
+ D ++I DEI G GR+G+ F A G PDI+ VGK + G + + A +
Sbjct: 259 DLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGGYLSLAATLC 317
Query: 174 SRKIAESLN 182
+ +A +++
Sbjct: 318 TADVAHTIS 326
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG 137
+ AR E +IA + EP+ G P + + M + E ++I DE+Q G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 138 RSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
+G+ WA+Q PDI+ GK + V+ R++ E
Sbjct: 279 LTGTA-WAYQQLDVAPDIVAFGKK----TQVCGVMAGRRVDE 315
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG 137
+ AR E +IA + EP+ G P + + M + E ++I DE+Q G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 138 RSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
+G+ WA+Q PDI+ GK + V+ R++ E
Sbjct: 279 LTGTA-WAYQQLDVAPDIVAFGKK----TQVCGVMAGRRVDE 315
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG 137
+ AR E +IA + EP+ G P + + M + E ++I DE+Q G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 138 RSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
+G+ WA+Q PDI+ GK + V+ R++ E
Sbjct: 279 LTGTA-WAYQQLDVAPDIVAFGKK----TQVCGVMAGRRVDE 315
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+E LAL++ARA+TGR+ I+ + YHG D S + + +P V+P
Sbjct: 123 TETTLLALRVARAFTGRRMILRFEGHYHG----WHDFSASGYNSHFDGQPAPGVLP---- 174
Query: 61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
E +A+ + R + H +IA I EPV G +L +
Sbjct: 175 ---ETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELA 231
Query: 121 HEIGGVVIADEIQCGMGRSGSH 142
+ G + I DE+ G R G+H
Sbjct: 232 RQYGALFILDEVISGF-RVGNH 252
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 15/170 (8%)
Query: 1 SEANDLALQLARAYTG------RQNIVVVDAAYHG----TVNLL-LDISPRAFMLSSEKK 49
S+AN+ ++L Y ++ I+ YHG T +L LD+ AF L +
Sbjct: 122 SDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVXTGSLTGLDLFHNAFDLP--RA 179
Query: 50 PWVHVIPFPDTYRGEFSADDPQAAQKYA-QAARNIMEAHRDNIATLICEPVFVVHGAVVP 108
P +H R + S + Q +Q A + I+ + IA I EP+ G V P
Sbjct: 180 PVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEEXILAEGPETIAAFIGEPILGTGGIVPP 239
Query: 109 PPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV 158
P G+ + + + +++ADE+ G GR G+ F + G PD+IT+
Sbjct: 240 PAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFGS-DHYGIKPDLITI 288
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 91 IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFW 144
IA +C PV++VH V G ++ + E G V + I G+G GSH W
Sbjct: 235 IADSVCTPVYIVH---VQSIGAADVICKHRKE-GVRVYGEPIAAGLGVDGSHMW 284
>pdb|1HI9|A Chain A, Zn-Dependent D-Aminopeptidase Dppa From Bacillus
Subtilis, A Self-Compartmentalizing Protease.
pdb|1HI9|B Chain B, Zn-Dependent D-Aminopeptidase Dppa From Bacillus
Subtilis, A Self-Compartmentalizing Protease.
pdb|1HI9|C Chain C, Zn-Dependent D-Aminopeptidase Dppa From Bacillus
Subtilis, A Self-Compartmentalizing Protease.
pdb|1HI9|D Chain D, Zn-Dependent D-Aminopeptidase Dppa From Bacillus
Subtilis, A Self-Compartmentalizing Protease.
pdb|1HI9|E Chain E, Zn-Dependent D-Aminopeptidase Dppa From Bacillus
Subtilis, A Self-Compartmentalizing Protease
Length = 274
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 10 LARAYTGRQNIVVVDAAYHGTVNLLLD-ISPRAFMLSSEKKPWVHVIPFPDTYRG 63
+A A+ V+V+ ++ NL+++ + P A ++S + KP+ V DT+RG
Sbjct: 43 IAEAFNSGCTEVLVNDSHSKMNNLMVEKLHPEADLISGDVKPFSMVEGLDDTFRG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,241,285
Number of Sequences: 62578
Number of extensions: 349227
Number of successful extensions: 899
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 93
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)