RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11784
(284 letters)
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 178 bits (454), Expect = 2e-53
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 13/188 (6%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW------VHV 54
+E+N+ A+++A+ TG+ IV ++HG + S+ +K
Sbjct: 112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAA-----SATYSAGRKGVGPAAVGSFA 166
Query: 55 IPFPDTYRGEFSADDPQAAQKYAQAARN-IMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
IP P TYR F + A + I N+A I EP+ G + P G++
Sbjct: 167 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYM 226
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
+ + G ++I DE Q G+GR+G +A Q G PDI+T+ K +G G+P+ A++T
Sbjct: 227 AALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVT 285
Query: 174 SRKIAESL 181
S I E
Sbjct: 286 SAAIEERA 293
Score = 31.0 bits (71), Expect = 0.43
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 229 IIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT 266
+ + G V P + ++ + + +S L +
Sbjct: 393 MNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 175 bits (445), Expect = 5e-52
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK-----PWVHVI 55
S+AN+ A + TGR ++ AYHG + AF S + + ++
Sbjct: 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSM-----AFSGHSVQADAAKADGLILL 168
Query: 56 PFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSL 115
P+PD YR + A + +I EP+ G +VPP G+L
Sbjct: 169 PYPDPYRPYRNDPTGDAILTLLTEK--LAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRK 226
Query: 116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSR 175
D G +V+ DE++ G+ RSG F+ +G VPDI+ +GK +G G+P+ AVI
Sbjct: 227 FADICRAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPA 285
Query: 176 KIAESL 181
+I +
Sbjct: 286 EILDCA 291
Score = 34.1 bits (79), Expect = 0.041
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 222 RRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL 268
R + ++V G GNVL F P + +T ++ + L+R F+ L
Sbjct: 379 YRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 425
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 159 bits (405), Expect = 5e-46
Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 20/191 (10%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW--------- 51
+EA + A+++AR TGR +V D AYHG NL L+++ P+
Sbjct: 135 AEAVENAIKVARLATGRPAVVAFDNAYHGRTNL-------TMALTAKSMPYKSQFGPFAP 187
Query: 52 -VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPP 110
V+ +P R E +AA++ + A ++A +I EP+ G +VP P
Sbjct: 188 EVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA--QSLAAIIIEPIQGEGGFIVPAP 245
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
G+L+ + + E G V IADE+Q G R+G ++A + +G VPDI+T+ K + GMP+ A
Sbjct: 246 GFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGIAGGMPLSA 304
Query: 171 VITSRKIAESL 181
V ++ +++
Sbjct: 305 VTGRAELMDAV 315
Score = 27.2 bits (61), Expect = 6.6
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 222 RRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL 268
+++ G +GNV+ LP + + + + ++ L+ I +
Sbjct: 403 AEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAK 449
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 153 bits (390), Expect = 6e-44
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 21/194 (10%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW--------- 51
SEA + A+++AR++T + +V D AYHG NL L+++ P+
Sbjct: 132 SEAVENAVKIARSHTHKPAVVAFDHAYHGRTNL-------TMALTAKVMPYKDGFGPFAP 184
Query: 52 -VHVIPFPDTYRG-EFSADDPQAAQKYAQAARNIMEAHR--DNIATLICEPVFVVHGAVV 107
++ P +R EF + + A+ A +++ DN+A ++ EP+ G +V
Sbjct: 185 EIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIV 244
Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMP 167
P G+L + D+ + V IADE+Q G R+G +A + +G PD+I K + G+P
Sbjct: 245 PADGFLPTLLDWCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAKGIAGGLP 303
Query: 168 IGAVITSRKIAESL 181
+ AV +I +S
Sbjct: 304 LSAVTGRAEIMDSP 317
Score = 27.2 bits (61), Expect = 6.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 219 RYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF 265
A +IV + G YGNV+ FLP + + + + + L +
Sbjct: 402 ALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 149 bits (379), Expect = 2e-42
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 23/191 (12%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW--------- 51
SEA + A+++ARA T R + AYHG + L+ + P+
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHY-------TLALTGKVNPYSAGMGLMPG 164
Query: 52 -VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPP 110
V+ +P G D + + + +A ++IA ++ EPV G P
Sbjct: 165 HVYRALYPCPLHGISEDDAIASIHRIFKN-----DAAPEDIAAIVIEPVQGEGGFYASSP 219
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
++ + E G ++IADE+Q G GR+G +A + G PD+ T K + G P+
Sbjct: 220 AFMQRLRALCDEHGIMLIADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAG 278
Query: 171 VITSRKIAESL 181
V ++ +++
Sbjct: 279 VTGRAEVMDAV 289
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 135 bits (341), Expect = 4e-37
Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 33/199 (16%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM---LSSEKKPW------ 51
+EA + ++++ + TGR+ I+ +HG R F L++ K
Sbjct: 114 TEAIEASIKVVKN-TGRKYIIAFLGGFHG----------RTFGSISLTASKAVQRSIVGP 162
Query: 52 ----VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR-------DNIATLICEPVF 100
V +P+P+ YR + + + + +E + + +A + EP+
Sbjct: 163 FMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQ 222
Query: 101 VVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGK 160
G V+PP + + + + G +++ DE+Q G+GR+G +A + VPD+IT+ K
Sbjct: 223 GEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAK 281
Query: 161 PMGNG-MPIGAVITSRKIA 178
+G G MPIGA I + +
Sbjct: 282 ALGGGIMPIGATIFRKDLD 300
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 124 bits (314), Expect = 6e-33
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 11/191 (5%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK-PWVH 53
SEAND +++ ++ I+ AYHG + ++ + + P
Sbjct: 132 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFV 191
Query: 54 VIPFPDTYR-GEFSADDPQAAQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPG 111
+ P +R GE + Q + A+ ++ D IA EPV G + P G
Sbjct: 192 HLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKG 251
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGA 170
+ + + + VI+DE+ CG GR+G + W T PD I K + G P+GA
Sbjct: 252 YFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGA 310
Query: 171 VITSRKIAESL 181
VI ++++ L
Sbjct: 311 VILGPELSKRL 321
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 124 bits (313), Expect = 7e-33
Identities = 48/200 (24%), Positives = 80/200 (40%), Gaps = 29/200 (14%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLL----LDISPRAF--MLSSE 47
SEAN+ A ++AR Y R + YHG T+ + +
Sbjct: 117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFA--- 173
Query: 48 KKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAV 106
+ PD YR + + + +M + IA I EP+ G +
Sbjct: 174 --SGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITGGGIL 231
Query: 107 VPPPGWLSLMYDYIHEI----GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM 162
+ P ++ +HE G ++I+DE+ CG GR+G + F PDIIT+ K +
Sbjct: 232 MAPQDYMKA----VHETCQKHGALLISDEVICGFGRTG-KAFGFMNYDVKPDIITMAKGI 286
Query: 163 GNG-MPIGAVITSRKIAESL 181
+ +P+ A R+I E+
Sbjct: 287 TSAYLPLSATAVKREIYEAF 306
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 119 bits (301), Expect = 4e-31
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 19/195 (9%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK----- 49
SE+ D +++ R Y ++ ++ YHG+ + +M +
Sbjct: 121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYM----HEQGDLP 176
Query: 50 -PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVV 107
P + I P Y+ + A+ + D +A + EP+ G +V
Sbjct: 177 IPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIV 236
Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-M 166
PP + + + +++ADE+ CG GR+G ++ Q G PD+ T K + +G +
Sbjct: 237 PPATYWPEIERICRKYDVLLVADEVICGFGRTG-EWFGHQHFGFQPDLFTAAKGLSSGYL 295
Query: 167 PIGAVITSRKIAESL 181
PIGAV +++AE L
Sbjct: 296 PIGAVFVGKRVAEGL 310
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 118 bits (299), Expect = 8e-31
Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 20/196 (10%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK----- 49
S+AN+ ++L Y ++ I+ YHG+ + ++
Sbjct: 122 SDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLF----HNAFDLP 177
Query: 50 -PWVHVIPFPDTYR-GEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAV 106
V P +R + S + Q +Q A ++ A + IA I EP+ G V
Sbjct: 178 RAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIV 237
Query: 107 VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG- 165
PP G+ + + + +++ADE+ G GR G + G PD+IT+ K + +
Sbjct: 238 PPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGIKPDLITIAKGLTSAY 296
Query: 166 MPIGAVITSRKIAESL 181
P+ VI + ++ + L
Sbjct: 297 APLSGVIVADRVWQVL 312
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 116 bits (294), Expect = 4e-30
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 20/195 (10%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLL------LDISPRAFMLSSEK 48
SEAND +++ R Y + I+ AYHG + + L
Sbjct: 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHG-STVASSALGGMAGMHAQSGLI--- 181
Query: 49 KPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVV 107
P VH I P+ + D + A+ + + +A I EPV G +V
Sbjct: 182 -PDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIV 240
Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-M 166
P + + + ++IADE+ CG GR+G +++ QT G P I+T+ K + +G
Sbjct: 241 APDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQTMGIRPHIMTIAKGLSSGYA 299
Query: 167 PIGAVITSRKIAESL 181
PIG I ++A +
Sbjct: 300 PIGGSIVCDEVAHVI 314
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 116 bits (293), Expect = 5e-30
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 20/196 (10%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLL------LDISPRAFMLSSEK 48
SE A+++ RAY + ++ YHG VN+ ++ + + F
Sbjct: 120 SECALTAVKMVRAYWRLKGQATKTKMIGRARGYHG-VNIAGTSLGGVNGNRKLFGQPM-- 176
Query: 49 KPWVHVIPFPDTYRGEFSADDPQA-AQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAV 106
V +P +S P+ A ++E H NIA + EP+ G +
Sbjct: 177 -QDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVL 235
Query: 107 VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG- 165
VPP G+L + ++ +++ DE+ G GR+G + + G PD++ + K + NG
Sbjct: 236 VPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFGVTPDLMCIAKQVTNGA 294
Query: 166 MPIGAVITSRKIAESL 181
+P+GAVI S +I ++
Sbjct: 295 IPMGAVIASTEIYQTF 310
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 114 bits (289), Expect = 7e-30
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 29/186 (15%)
Query: 2 EANDLALQLARAYTGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVHVIPF--- 57
EAN+ AL+ ARA+TGR+ V + G T+ LS +P PF
Sbjct: 115 EANEAALKFARAHTGRKKFVAAMRGFSGRTM----------GSLSVTWEPKYRE-PFLPL 163
Query: 58 -PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLM 116
+ +D +A + A + A +I EPV G P +L
Sbjct: 164 VEPVEFIPY--NDVEALK----------RAVDEETAAVILEPVQGEGGVRPATPEFLRAA 211
Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRK 176
+ E G ++I DEIQ GMGR+G +AF+ G VPDI+T+ K +G G+P+G + +
Sbjct: 212 REITQEKGALLILDEIQTGMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREE 270
Query: 177 IAESLN 182
+A S+
Sbjct: 271 VARSMP 276
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 115 bits (289), Expect = 2e-29
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLL----LDISPRAF--MLSSE 47
+EA ++AL++A Y +Q + + YHG T+ + +++ + ++
Sbjct: 114 AEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLM--- 170
Query: 48 KKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA-- 105
+ P P YR E D + + + ++E H + IA L E +V GA
Sbjct: 171 --FESYKAPIPYVYRSES-GDPDECRDQCLRELAQLLEEHHEEIAALSIES--MVQGASG 225
Query: 106 -VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGN 164
+V P G+L+ + + ++I DE+ G GR+G F A + + PD++ GK +
Sbjct: 226 MIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPDLMAAGKGITG 284
Query: 165 G-MPIGAVITSRKIAE 179
G +PI + I +
Sbjct: 285 GYLPIAVTFATEDIYK 300
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 113 bits (286), Expect = 4e-29
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 22/194 (11%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHV 54
SEA + A++LAR Y GR ++ +YHG L S ++ + +
Sbjct: 99 SEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGAR----RELYTPL 154
Query: 55 IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVF-VVHGAVVPPPGW 112
+ P+ + D + + A+ R ++E + +A + EPV A+ P PG+
Sbjct: 155 MR-PEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGY 213
Query: 113 LSLMYDYIHEI----GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MP 167
+ +I G + IADE+ GMGR GS + G PDI +GK + G P
Sbjct: 214 YER----VRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAP 269
Query: 168 IGAVITSRKIAESL 181
+ ++ + ++ E++
Sbjct: 270 LAGLLAAPQVYETV 283
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 110 bits (278), Expect = 8e-28
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 19/195 (9%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLL------LDISPRAFMLSSEK 48
S A D AL+ + Y ++ I+V YHG L + F ++
Sbjct: 124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHG-STALTAACTGRTGNWPNFDIAQ-- 180
Query: 49 KPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVV 107
+ + P+ + Q + +E+ D IA + EP+ G ++
Sbjct: 181 -DRISFLSSPNPRH-AGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVII 238
Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-M 166
PP G+ + + + I+DE+ G GR G F + + G VPDIIT K + +G +
Sbjct: 239 PPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV 298
Query: 167 PIGAVITSRKIAESL 181
P+G + S + +
Sbjct: 299 PLGGLAISEAVLARI 313
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 104 bits (261), Expect = 6e-26
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 34/190 (17%)
Query: 2 EANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVHVI 55
E+ + A++LAR Y + + + ++HG T LS+ +P H
Sbjct: 97 ESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTY----------GSLSATGQPKFHK- 145
Query: 56 PF----PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
F P + +D + K + A +I E + G
Sbjct: 146 GFEPLVPGFSYAKL--NDIDSVYK----------LLDEETAGIIIEVIQGEGGVNEASED 193
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
+LS + + E ++I DE+Q G+GR+G F+A+Q PD+I + K +G G+PIGA+
Sbjct: 194 FLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFNLKPDVIALAKGLGGGVPIGAI 252
Query: 172 ITSRKIAESL 181
+ ++A+S
Sbjct: 253 LAREEVAQSF 262
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 103 bits (260), Expect = 1e-25
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 49/198 (24%)
Query: 2 EANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLS---SEKK-- 49
EAN+ A +LAR Y + I+ A+HG ++ F +S K
Sbjct: 125 EANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSL----------FTVSVGGQPKYSD 174
Query: 50 ------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVH 103
+ +PF D A + +M+ D+ ++ EP+
Sbjct: 175 GFGPKPADIIHVPFND-----------------LHAVKAVMD---DHTCAVVVEPIQGEG 214
Query: 104 GAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG 163
G P +L + D E +++ DE+QCGMGR+G +A+ G PDI+T K +G
Sbjct: 215 GVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALG 273
Query: 164 NGMPIGAVITSRKIAESL 181
G P+ A++T+++IA +
Sbjct: 274 GGFPVSAMLTTQEIASAF 291
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 102 bits (256), Expect = 3e-25
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 2 EANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVHVI 55
E+ + A++ AR Y + ++HG T+ LS
Sbjct: 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTL----------GALSLTANEKYQK- 152
Query: 56 PF----PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
PF ++ +D + +K + +I E V G
Sbjct: 153 PFKPLISGVKFAKY--NDISSVEK----------LVNEKTCAIILESVQGEGGINPANKD 200
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
+ + E ++IADEIQCGMGRSG F+A++ +PDI+T K +G G+ +GA
Sbjct: 201 FYKALRKLCDEKDILLIADEIQCGMGRSG-KFFAYEHAQILPDIMTSAKALGCGLSVGAF 259
Query: 172 ITSRKIAE 179
+ ++K+A
Sbjct: 260 VINQKVAS 267
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 102 bits (257), Expect = 4e-25
Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 29/196 (14%)
Query: 1 SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPW--- 51
S A ++A+++A Y RQ + YHG T + P M W
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSM----HSLWKGY 168
Query: 52 ---VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA--- 105
P P + D + ++ +M AHR IA +I EP+ V GA
Sbjct: 169 LPENLFAPAPQSRM------DGEWDERDMVGFARLMAAHRHEIAAVIIEPI--VQGAGGM 220
Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
+ P WL + G ++IADEI G GR+G F A + PDI+ +GK + G
Sbjct: 221 RMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGG 279
Query: 166 -MPIGAVITSRKIAES 180
M + A +T+R++AE+
Sbjct: 280 TMTLSATLTTREVAET 295
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 102 bits (256), Expect = 5e-25
Identities = 42/207 (20%), Positives = 70/207 (33%), Gaps = 46/207 (22%)
Query: 1 SEANDLALQLARAYTGRQN------------IVVVDAAYHGTVNLLLDISPRAFM-LS-- 45
+ A + AL+ A + R N ++ + A+HG R+ LS
Sbjct: 129 ALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHG----------RSGYTLSLT 178
Query: 46 -SEKK--------PW-VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLI 95
++ W P+ E + +A + AR E +IA +
Sbjct: 179 NTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAE--ALRQARAAFETRPHDIACFV 236
Query: 96 CEPV----FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA 151
EP+ G P + + M + E ++I DE+Q G G +G WA+Q
Sbjct: 237 AEPIQGEG----GDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDV 291
Query: 152 VPDIITVGKPMGNGMPIGAVITSRKIA 178
PDI+ GK +
Sbjct: 292 APDIVAFGKKTQVCGVMAGRRVDEVAD 318
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 99.1 bits (248), Expect = 4e-24
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 48/199 (24%)
Query: 2 EANDLALQLARAY--------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--- 49
EA + A++ AR + R I+V + +HG T + +S +SS ++
Sbjct: 104 EAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRT---MGAVS-----MSSNEEYKR 155
Query: 50 ------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVH 103
P + VIP+ D +A + A N A I EP+
Sbjct: 156 GFGPMLPGIIVIPY----------GDLEALKA----------AITPNTAAFILEPIQGEA 195
Query: 104 GAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG 163
G +PP G+L + + + +ADEIQ G+GR+G +A PD+ +GK +G
Sbjct: 196 GINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK-VFACDWDNVTPDMYILGKALG 254
Query: 164 NGM-PIGAVITSRKIAESL 181
G+ PI +R I
Sbjct: 255 GGVFPISCAAANRDILGVF 273
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 98.8 bits (247), Expect = 7e-24
Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 35/190 (18%)
Query: 2 EANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVHVI 55
EAN+ A+++AR Y + I+ ++HG T+ L++ +P
Sbjct: 108 EANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTL----------GSLTATGQPKYQK- 156
Query: 56 PF----PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
PF P EF ++ + ++ +++ + EP+ G V
Sbjct: 157 PFEPLVPGFEYFEF--NNVEDLRR----------KMSEDVCAVFLEPIQGESGIVPATKE 204
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
+L E +++ DE+QCGMGR+G +A+Q G VPD++T K +G G+PIGAV
Sbjct: 205 FLEEARKLCDEYDALLVFDEVQCGMGRTG-KLFAYQKYGVVPDVLTTAKGLGGGVPIGAV 263
Query: 172 ITSRKIAESL 181
I + A L
Sbjct: 264 IV-NERANVL 272
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 98.5 bits (246), Expect = 2e-23
Identities = 38/219 (17%), Positives = 69/219 (31%), Gaps = 65/219 (29%)
Query: 1 SEANDLALQLARAYTGRQN--------------------------IVVVDAAYHGTVNLL 34
S +N+ A + + + I+ A+HG
Sbjct: 137 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHG----- 191
Query: 35 LDISPRAFM-LSSEKKPWVH----------VIPFPDTY--RGEFSADDPQAAQKYAQAAR 81
R L++ +H + PFP EF ++ Q + +
Sbjct: 192 -----RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVE 246
Query: 82 NIMEAHR---DNIATLICEPV-----FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQ 133
+++ +R +A +I EP+ + + D + G + DE+Q
Sbjct: 247 DLIVKYRKKKKTVAGIIVEPIQSEGGDNH-----ASDDFFRKLRDISRKHGCAFLVDEVQ 301
Query: 134 CGMGRSGSHFWAFQTQG--AVPDIITVGKPMGNGMPIGA 170
G G +G FWA + G D++T K M G
Sbjct: 302 TGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGFFHK 339
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 95.4 bits (238), Expect = 1e-22
Identities = 52/200 (26%), Positives = 79/200 (39%), Gaps = 47/200 (23%)
Query: 2 EANDLALQLARAY--------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--- 49
EAN+ A +L R + IVV + G T L IS S+ KK
Sbjct: 133 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRT---LGCIS-----ASTTKKCTS 184
Query: 50 ------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVH 103
P +P+ DD +A ++ E N+ I EP+
Sbjct: 185 NFGPFAPQFSKVPY----------DDLEALEE---------ELKDPNVCAFIVEPIQGEA 225
Query: 104 GAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG 163
G +VP +L +YD + + +ADE+Q G+GR+G PD+I +GK +
Sbjct: 226 GVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALS 284
Query: 164 NGM-PIGAVITSRKIAESLN 182
G PI AV+ + I +
Sbjct: 285 GGHYPISAVLANDDIMLVIK 304
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 95.0 bits (237), Expect = 2e-22
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 22/190 (11%)
Query: 1 SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVH 53
S + ++A ++A Y G++ ++ YHG T + P M W
Sbjct: 145 SVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGM----HSLWTD 200
Query: 54 VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA---VVPPP 110
V D Y+ A + H +A ++ EPV V GA P
Sbjct: 201 V--LAAQVFAPQVPRD--YDPAYSAAFEAQLAQHAGELAAVVVEPV--VQGAGGMRFHDP 254
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIG 169
+L + D ++I DEI G GR+G+ F A G PDI+ VGK + G + +
Sbjct: 255 RYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGGYLSLA 313
Query: 170 AVITSRKIAE 179
A + + +A
Sbjct: 314 ATLCTADVAH 323
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 94.2 bits (235), Expect = 3e-22
Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 47/199 (23%)
Query: 2 EANDLALQLARAY--------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--- 49
EA + A +LAR + + IV + G T L IS S++
Sbjct: 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRT---LSAIS-----SSTDPTSYD 195
Query: 50 ------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVH 103
P +IP+ +D A ++ N+A + EP+
Sbjct: 196 GFGPFMPGFDIIPY----------NDLPALER---------ALQDPNVAAFMVEPIQGEA 236
Query: 104 GAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG 163
G VVP PG+L + + + IADEIQ G+ R+G + A + PDI+ +GK +
Sbjct: 237 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALS 295
Query: 164 NGM-PIGAVITSRKIAESL 181
G+ P+ AV+ I ++
Sbjct: 296 GGLYPVSAVLCDDDIMLTI 314
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 82.7 bits (204), Expect = 7e-18
Identities = 38/236 (16%), Positives = 71/236 (30%), Gaps = 60/236 (25%)
Query: 1 SEANDLALQLARAY---------------TGRQNIVVVDAAYHG-TV------------- 31
S A ++AL++A ++ + +YHG T+
Sbjct: 452 STAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTG 511
Query: 32 ---NLLLDISPRAFML-SSEKKPWVHVIPFPDTYRGEF-----------SADDPQAAQKY 76
+ I P+++ D + A
Sbjct: 512 FLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTL 571
Query: 77 AQAARNIMEAH---------RDNIATLICEPVFVVHGA---VVPPPGWLSLMYDYIHEIG 124
A+ + H ++ LI EPV +HGA + P + ++ +
Sbjct: 572 ARIYSAYLSKHLQEHSGVRQSAHVGALIIEPV--IHGAGGMHMVDPLFQRVLVNECRNRK 629
Query: 125 GVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAE 179
VI DE+ G R G + G PDI K + G +P+ + + + +
Sbjct: 630 IPVIFDEVFTGFWRLGVET-TTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFD 684
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 79.6 bits (197), Expect = 5e-17
Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 43/178 (24%)
Query: 2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTY 61
EAN +AL A A TGR+ ++ D YHG ++ F
Sbjct: 167 EANLMALATATAITGRKTVLAFDGGYHG-----------------------GLLNF---- 199
Query: 62 RGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
S P A + + ++++ H + A ++ EP+ G V +L
Sbjct: 200 -A--SGHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFL 256
Query: 114 SLMYDYIHEIGGVVIADEIQCG-MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
L+ G ++I DE+ + G A + G D+ T+GK +G GM GA
Sbjct: 257 DLLRAEASRCGALLIFDEVMTSRLSGGG----AQEMLGISADLTTLGKYIGGGMSFGA 310
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 78.0 bits (193), Expect = 1e-16
Identities = 40/190 (21%), Positives = 63/190 (33%), Gaps = 33/190 (17%)
Query: 2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTY 61
E LAL++ARA+TGR+ I+ + YHG + F
Sbjct: 124 ETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFD------------------ 165
Query: 62 RGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
G+ + + R + H +IA I EPV G +L
Sbjct: 166 -GQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFL 224
Query: 114 SLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
+ + G + I DE+ G +G G PD+ + K G+P G +
Sbjct: 225 REGAELARQYGALFILDEVISGFRVGNHG----MQALLDVQPDLTCLAKASAGGLPGGIL 280
Query: 172 ITSRKIAESL 181
+ L
Sbjct: 281 GGREDVMGVL 290
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 75.2 bits (186), Expect = 1e-15
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 42/180 (23%)
Query: 7 ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
L++ RAYTGR I+ + YHG ++ L V V P
Sbjct: 124 VLRIMRAYTGRDKIIKFEGCYHGHADMFL----------------VKAGSGVATLGLPS- 166
Query: 61 YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
S P+ +A + + + IA +I EP+ G +VP G+
Sbjct: 167 -----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGF 221
Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
L + + E +++ DE+ G + G + G PD+ T+GK +G G+P+GA
Sbjct: 222 LEGLREITLEHDALLVFDEVITGFRIAYGG----VQEKFGVTPDLTTLGKIIGGGLPVGA 277
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 75.2 bits (186), Expect = 1e-15
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 42/180 (23%)
Query: 7 ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
AL+LAR YTGR I+ YHG + LL + V PD
Sbjct: 125 ALRLARGYTGRNKILKFIGCYHGHGDSLL----------------IKAGSGVATLGLPD- 167
Query: 61 YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
S P+ K ++ + E D+IA +I EPV G V P PG+
Sbjct: 168 -----SPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGF 222
Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
L + + + G ++I DE+ G + + G PD+ +GK +G G+P+GA
Sbjct: 223 LEGLREVTEQNGALLIFDEVMTGFRVAYNC----GQGYYGVTPDLTCLGKVIGGGLPVGA 278
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 74.9 bits (185), Expect = 2e-15
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 42/191 (21%)
Query: 7 ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
A++LAR YTGR I+ D YHG+ + +L V + P
Sbjct: 128 AIRLARGYTGRDLILKFDGCYHGSHDAVL----------------VAAGSAAAHYGVPT- 170
Query: 61 YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
SA P+A + +A + + D IA +I EPV G + P +
Sbjct: 171 -----SAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREF 225
Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
L+ + E G ++I DE+ G +G G A DII +GK +G G P+GA
Sbjct: 226 LAALQRLSRESGALLILDEVVTGFRLGLEG----AQGYFNIEGDIIVLGKIIGGGFPVGA 281
Query: 171 VITSRKIAESL 181
V SR++ L
Sbjct: 282 VAGSREVMSLL 292
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 74.8 bits (185), Expect = 2e-15
Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 42/180 (23%)
Query: 7 ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
+++ARAYTGR I+ YHG +L+L V PD
Sbjct: 127 TIRVARAYTGRTKIMKFAGCYHGHSDLVL----------------VAAGSGPSTLGTPD- 169
Query: 61 YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
SA PQ+ + + + ++ +A ++ EP+ G V P PG+
Sbjct: 170 -----SAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGF 224
Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
L + + +HE G +VI DE+ G A G PD+ +GK +G G+PIGA
Sbjct: 225 LEKVNELVHEAGALVIYDEVITAFRFMYGG----AQDLLGVTPDLTALGKVIGGGLPIGA 280
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 74.4 bits (184), Expect = 2e-15
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 42/180 (23%)
Query: 7 ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
A++LAR YTGR I+ + YHG + LL V + P+
Sbjct: 125 AIRLARGYTGRDKIIKFEGCYHGHADCLL----------------VKAGSGALTLGQPN- 167
Query: 61 YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
S P K+ + R E + +A +I EPV + P P +
Sbjct: 168 -----SPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEF 222
Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
L + E G ++I DE+ G + +G A +PD+ +GK +G GMP+GA
Sbjct: 223 LPGLRALCDEFGALLIIDEVMTGFRVALAG----AQDYYHVIPDLTCLGKIIGGGMPVGA 278
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 70.6 bits (174), Expect = 5e-14
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 43/180 (23%)
Query: 7 ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
AL+LAR YTGR IV YHG + LL V + P
Sbjct: 124 ALRLARGYTGRPYIVKFRGNYHGHADGLL----------------VEAGSGALTLGVPS- 166
Query: 61 YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
SA P+ K + R +++ + IA +I EPV G +VP +
Sbjct: 167 -----SAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDF 221
Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
L +++ G ++IADE+ G + G A + G PD++T+GK +G G+P A
Sbjct: 222 LKALHE-AKAYGVLLIADEVMTGFRLAFGG----ATELLGLKPDLVTLGKILGGGLPAAA 276
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.035
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+ QL + Y + I D Y VN +LD F+ E+ + + D
Sbjct: 518 GSILNTLQQL-KFY--KPYICDNDPKYERLVNAILD-----FLPKIEEN--LICSKYTDL 567
Query: 61 YRGEFSAD-DPQAAQKYAQAAR 81
R A+ + + + Q R
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589
Score = 27.1 bits (59), Expect = 9.2
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 26/80 (32%)
Query: 153 PDIITVGKPMGNGMPIGAVI-----------------TSRKIAESLNCLD--DNRPSGKY 193
P + P + I I + I SLN L+ + R
Sbjct: 319 PREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 194 L-VRPLGIN-----LHIFWC 207
L V P + L + W
Sbjct: 378 LSVFPPSAHIPTILLSLIWF 397
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.085
Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 260 TLNRIFTSLQM---DSSPAI 276
L ++ SL++ DS+PA+
Sbjct: 21 ALKKLQASLKLYADDSAPAL 40
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase;
HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Length = 365
Score = 30.3 bits (67), Expect = 0.70
Identities = 13/78 (16%), Positives = 19/78 (24%), Gaps = 3/78 (3%)
Query: 23 VDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA--- 79
VDA Y + A + + T P Q+ A
Sbjct: 219 VDALYSWLPWAGELQATGARPVVDLGLDERNAYASVWTVSSGLVRQRPGLVQRLVDAAVD 278
Query: 80 ARNIMEAHRDNIATLICE 97
A H D + +L
Sbjct: 279 AGLWARDHSDAVTSLHAA 296
>3bp3_A Glucose-specific phosphotransferase enzyme IIB component;
transcription regulation, inner membrane, kinase,
membrane, phosphoprotein; 1.65A {Escherichia coli} PDB:
1o2f_B 3bp8_C
Length = 82
Score = 27.6 bits (62), Expect = 1.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDA 25
+ +++A L A+ G++NI +DA
Sbjct: 1 TGTSEMAPALVAAFGGKENITNLDA 25
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 27.9 bits (63), Expect = 1.4
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 174 SRKIAESLNCLDDNRPSGKYLVRP 197
R AE + L R G +L+R
Sbjct: 11 PRAKAEEM--LSKQRHDGAFLIRE 32
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
genomics, PSI-2, protein structure initiative; 1.35A
{Streptomyces avermitilis}
Length = 284
Score = 29.3 bits (65), Expect = 1.5
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 56 PFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATL-ICEPVFVVHGAVVPPPGWLS 114
P +DD +++++ ++EA +++A F G+ L
Sbjct: 31 PHASLLADWGLSDDVAGLERFSRT---VVEALGEHVAVFKPQSAFFERFGS--RGVAVLE 85
Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP---DIITVGKPMGNGM 166
G +V+ D + +G + + + + P D +TV +G G
Sbjct: 86 KTVAEARAAGALVVMDAKRGDIGSTMAAYAEAFLRKDSPLFSDALTVSPYLGYGS 140
>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural
genomics, structural genomics consortium, SGC, unknown
function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB:
2aqw_A
Length = 352
Score = 29.1 bits (64), Expect = 1.6
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 109 PPGWLSL--MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGM 166
G +L ++DY++ + + D +G + ++ F + D T+ MG M
Sbjct: 134 SVGINALKNVFDYLNSMNIPTMLDMKINDIGNTVKNYRKFIFEYLKSDSCTINVYMGTSM 193
Query: 167 PIGAVITSRK 176
K
Sbjct: 194 LKDICFDYEK 203
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC,
structural genomics, struc genomics consortium, lyase;
HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB:
2guu_A*
Length = 353
Score = 29.0 bits (64), Expect = 1.7
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 64 EFSADDPQAAQKYAQAARNIMEAHRDNIATL-ICEPVFVVHGAVVPPPGWLSL--MYDYI 120
+ + + + + I+ ++ + ++ +G G L ++DY+
Sbjct: 102 KEAQEKDEFFYFFNHFCFYIINETKEYALAYKMNFAFYLPYG----SLGVDVLKNVFDYL 157
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGM 166
H + I D +G + H+ F D T MG M
Sbjct: 158 HHLNVPTILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMGTQM 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 2.4
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 15/52 (28%)
Query: 37 ISPRAFMLSS---EKKPWVHVIPFP-DTY------RGEFSADDPQAAQKYAQ 78
S R LS E HV+ P ++ + +F+ P+ + +A
Sbjct: 4 YSTRPLTLSHGSLE-----HVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Score = 28.1 bits (62), Expect = 4.0
Identities = 27/168 (16%), Positives = 44/168 (26%), Gaps = 50/168 (29%)
Query: 16 GRQNIVVV--DAAYHGTVNLL--------LDISPRAFMLSSEKKPWVHV------IPFPD 59
G +N+VV + +G L LD S F SE+K PF
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF---SERKLKFSNRFLPVASPFHS 429
Query: 60 TY----RGEFSADDPQAAQKYAQAARNI----------MEAHRDNIATLICEPVFV--VH 103
+ D + + I + +I+ I + + V
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 104 --GAVVPP--------PGWLSLMYDYIHEI--G---GVVIADEIQCGM 136
PG S + H G V++A +
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
>1iba_A Glucose permease; phosphotransferase system, sugar transport,
transferase, phosphorylation, transmembrane, inner
membrane, phoshphotransferase; NMR {Escherichia coli}
SCOP: d.95.1.1
Length = 101
Score = 26.2 bits (58), Expect = 5.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDA 25
+ +++A L A+ G++NI +DA
Sbjct: 10 TGTSEMAPALVAAFGGKENITNLDA 34
>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum,
5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE
NUP; 1.47A {Plasmodium falciparum} PDB: 2qaf_A* 3bar_A*
2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A
2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A
Length = 342
Score = 26.8 bits (58), Expect = 8.0
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 5/129 (3%)
Query: 109 PPGWLSL--MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGM 166
G L ++DY++E+ I D +G + ++ F + D TV MG M
Sbjct: 132 SVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNM 191
Query: 167 PIGAVITSRKIAES---LNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRR 223
K + N S + N + + ++ Y +
Sbjct: 192 LKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQ 251
Query: 224 MKEAKIIVA 232
E V
Sbjct: 252 NNEFIGFVV 260
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.426
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,507,325
Number of extensions: 281123
Number of successful extensions: 919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 815
Number of HSP's successfully gapped: 80
Length of query: 284
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 191
Effective length of database: 4,105,140
Effective search space: 784081740
Effective search space used: 784081740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)