RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11784
(284 letters)
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 107 bits (268), Expect = 2e-27
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 10/240 (4%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
+EA L+L RAYTGR I+ + YHG + F++ + +P
Sbjct: 118 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHAD--------MFLVKAGSGVATLGLPSSPG 169
Query: 61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
+ +A+ +A + + + IA +I EP+ G +VP G+L + +
Sbjct: 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 229
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAES 180
E +++ DE+ G ++ + G PD+ T+GK +G G+P+GA R+I +
Sbjct: 230 LEHDALLVFDEVMTGFRI--AYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQL 287
Query: 181 LNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNV 240
+ +G PL + I +L Y Y + + ++A E G+
Sbjct: 288 VAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHA 347
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 99.0 bits (246), Expect = 2e-24
Identities = 66/303 (21%), Positives = 105/303 (34%), Gaps = 62/303 (20%)
Query: 2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPD 59
EAN+ AL+ ARA+TGR+ V + G L ++ V IP+ D
Sbjct: 107 EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYND 166
Query: 60 TYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDY 119
+ A + A +I EPV G P +L +
Sbjct: 167 --------------------VEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREI 206
Query: 120 IHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
E G ++I DEIQ GMGR+G F F+ G VPDI+T+ K +G G+P+G + ++A
Sbjct: 207 TQEKGALLILDEIQTGMGRTGKRFA-FEHFGIVPDILTLAKALGGGVPLGVAVMREEVAR 265
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYR-------------------- 219
S+ G + I +
Sbjct: 266 SMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVR 325
Query: 220 -----------------YTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLN 262
R KE +++ G V+ FLP + + E++ +V +
Sbjct: 326 GMGLMVGLELKEKAAPYIARLEKEHRVLALQAG--PTVIRFLPPLVIEKEDLERVVEAVR 383
Query: 263 RIF 265
+
Sbjct: 384 AVL 386
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 90.2 bits (223), Expect = 3e-21
Identities = 44/264 (16%), Positives = 82/264 (31%), Gaps = 52/264 (19%)
Query: 51 WVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD-NIATLICEPVFVVHGAVVPP 109
F PQ ++ + E +D N+ I EP+ G +VP
Sbjct: 146 GCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPS 205
Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPI 168
+L +YD + + +ADE+Q G+GR+ PD+I +GK + G PI
Sbjct: 206 DNYLQGVYDICKKYNVLFVADEVQTGLGRT-GKLLCVHHYNVKPDVILLGKALSGGHYPI 264
Query: 169 GAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYY------------ 216
AV+ + I + Y PL ++ + +L++
Sbjct: 265 SAVLANDDIM---LVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLE 321
Query: 217 --------------------------------LYRYTRRMKEAKIIVANEGEYGNVLLFL 244
+ ++KE +I + +
Sbjct: 322 NLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITR--DVHDKTIRLT 379
Query: 245 PAMCLTTENVLFIVSTLNRIFTSL 268
P +C+T E + + +
Sbjct: 380 PPLCITKEQLDECTEIIVKTVKFF 403
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 88.4 bits (218), Expect = 2e-20
Identities = 54/306 (17%), Positives = 99/306 (32%), Gaps = 51/306 (16%)
Query: 12 RAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQ 71
RA T R + AYHG + L ++ + S+ + +
Sbjct: 122 RAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDD 181
Query: 72 AAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADE 131
A + +N ++IA ++ EPV G P ++ + E G ++IADE
Sbjct: 182 AIASIHRIFKNDA--APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE 239
Query: 132 IQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAES----------- 180
+Q G GR+ +A + G PD+ T K + G P+ V ++ ++
Sbjct: 240 VQSGAGRT-GTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYA 298
Query: 181 ------------LNCLDDNRPSGKYL----------------------VRPLGINLHIFW 206
L + K VR LG + I
Sbjct: 299 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 358
Query: 207 CLILLSITYYLYRYTRRMKEAK---IIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR 263
+ A+ +I+ + G Y NVL L + + + + +++
Sbjct: 359 FEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQ 418
Query: 264 IFTSLQ 269
F +
Sbjct: 419 CFDEAK 424
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 86.3 bits (213), Expect = 7e-20
Identities = 48/262 (18%), Positives = 85/262 (32%), Gaps = 50/262 (19%)
Query: 50 PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPP 109
+ P +Y G Y N+A + EP+ G VVP
Sbjct: 148 SAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPD 207
Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPI 168
PG+L + + + IADEIQ G+ R+ + A + PDI+ +GK + G P+
Sbjct: 208 PGYLMGVRELCTRHQVLFIADEIQTGLART-GRWLAVDYENVRPDIVLLGKALSGGLYPV 266
Query: 169 GAVITSRKIAESLNCLDDNRPSGKYLVRPLG-----INLHIFWCLILLSITYYLYRYTR- 222
AV+ I + Y PLG L + L L R
Sbjct: 267 SAVLCDDDIML---TIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 323
Query: 223 -------------------------------------RMKEAKIIVANEGEYGNVLLFLP 245
R+++ ++ + +G+++ F P
Sbjct: 324 ELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLA--KPTHGDIIRFAP 381
Query: 246 AMCLTTENVLFIVSTLNRIFTS 267
+ + + + + +N+ S
Sbjct: 382 PLVIKEDELRESIEIINKTILS 403
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 69.7 bits (169), Expect = 4e-14
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 3/193 (1%)
Query: 1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW--VHVIPFP 58
+E+N+ A+++A+ TG+ IV ++HG + A +
Sbjct: 110 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPF 169
Query: 59 DTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYD 118
+ A I N+A I EP+ G + P G+++ +
Sbjct: 170 TYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKR 229
Query: 119 YIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIA 178
G ++I DE Q G+GR+G+ F Q G PDI+T+ K +G G+P+ A++TS I
Sbjct: 230 KCEARGMLLILDEAQTGVGRTGTMFA-CQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIE 288
Query: 179 ESLNCLDDNRPSG 191
E + L +
Sbjct: 289 ERAHELGYLFYTT 301
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 57.7 bits (138), Expect = 4e-10
Identities = 52/292 (17%), Positives = 98/292 (33%), Gaps = 45/292 (15%)
Query: 14 YTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAA 73
RQ + YHG + + + S K ++ F + D +
Sbjct: 131 GEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRM---DGEWD 187
Query: 74 QKYAQAARNIMEAHRDNIATLICEPVFVVHGA-VVPPPGWLSLMYDYIHEIGGVVIADEI 132
++ +M AHR IA +I EP+ G + P WL + G ++IADEI
Sbjct: 188 ERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEI 247
Query: 133 QCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDD------ 186
G GR+G F + A + G M + A +T+R++AE+++ +
Sbjct: 248 ATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHG 307
Query: 187 -----NRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----- 236
N + L I W + I L ++A+++
Sbjct: 308 PTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGV 367
Query: 237 -------------------------YGNVLLFLPAMCLTTENVLFIVSTLNR 263
+G ++ +P + + + + + +NR
Sbjct: 368 VETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNR 419
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 49.9 bits (118), Expect = 1e-07
Identities = 28/217 (12%), Positives = 56/217 (25%), Gaps = 24/217 (11%)
Query: 1 SEANDLALQLARAY---TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPF 57
A ++ + Y G+ V + +H ++
Sbjct: 100 RGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINI-VTEKAFDSET 158
Query: 58 PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
D ++G+F + I + DNI ++ G L +Y
Sbjct: 159 YDDWKGDFDIKKLKEN---------IAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY 209
Query: 118 DYIHEIGGVVIADEIQC------GMGRSGSHFWA-----FQTQGAVPDIITVGKPMGNGM 166
+ + G V+ D + R + A D +T+ +
Sbjct: 210 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL 269
Query: 167 PIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLH 203
IG ++ R E + V G+
Sbjct: 270 NIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGR 306
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 41.9 bits (97), Expect = 5e-05
Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 29/235 (12%)
Query: 3 ANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYR 62
+ L R + ++ + ++ + + + + + D R
Sbjct: 125 SLTLCFLTLRHKRPKAKYIIWPRIDQKSC-------FKSMVTAGFEPVVIENVLEGDELR 177
Query: 63 GEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE 122
D +A + I E ++I L L +
Sbjct: 178 T-----DLKAVEAK------IQELGPEHILCLHSTTACFAPRVPDR----LEELAVICAN 222
Query: 123 IGGVVIADEIQCGMGRSGSHF--WAFQTQGAVPDIITVGKPMGNGMPIGAVITS-----R 175
+ + H + + ++ K + + +
Sbjct: 223 YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQ 282
Query: 176 KIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKII 230
I++ PS L+ L + + L+ ++Y T+ K A+
Sbjct: 283 DISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAH 337
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 41.6 bits (96), Expect = 6e-05
Identities = 38/339 (11%), Positives = 82/339 (24%), Gaps = 81/339 (23%)
Query: 2 EANDLALQLARAY--------------------------TGRQNIVVVDAAYHGTVNLLL 35
+N+ A + + +I+ A+HG L
Sbjct: 128 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCL 187
Query: 36 DISPRAFMLSSEKKPWVHV------IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD 89
+ + + + + +P + + + + + +
Sbjct: 188 ATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKK 247
Query: 90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWAFQT 148
+A +I EP+ G + + D + G + DE+Q G G +G
Sbjct: 248 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWG 307
Query: 149 QGAVPDIITVGKPMGNGMPIG--------------------------------------- 169
D++T K M G
Sbjct: 308 LDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLL 367
Query: 170 --AVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEA 227
A + + L L P VR G +C + +
Sbjct: 368 SNAAHAGKVLLTGLLDLQARYPQFISRVRGRG-----TFCSFDTPDESIRNKLISIARNK 422
Query: 228 KIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT 266
+++ G + F P + + ++ + I
Sbjct: 423 GVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDILA 459
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 253
Score = 31.4 bits (70), Expect = 0.090
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGM 136
Q ++ A R+ + L+ F GA L M + GVV G
Sbjct: 32 QHSQGKQTA-RERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGR 89
>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
synthase (DAHP synthase, AroG) {Escherichia coli,
phenylalanine-regulated isozyme [TaxId: 562]}
Length = 343
Score = 29.8 bits (67), Expect = 0.36
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 66 SADDPQAAQKYAQAARNIMEAHRDNIATLI---CE-PVFVVHGAVVPPPGWLSLMYDY-- 119
S DP AA++YA + E +D + ++ E P V GW L+ D
Sbjct: 55 SIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTV--------GWKGLINDPHM 106
Query: 120 ---IHEIGGVVIADEIQCGMGRSG 140
G+ IA ++ + SG
Sbjct: 107 DNSFQINDGLRIARKLLLDINDSG 130
>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
synthase (DAHP synthase, AroG) {Baker's yeast
(Saccharomyces cerevisiae), tyrosine-regulated isozyme
[TaxId: 4932]}
Length = 346
Score = 27.1 bits (60), Expect = 2.3
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 66 SADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPP---GWLSLMYD 118
S D +AAQ+YA + + + + ++ ++ + P GW L+ D
Sbjct: 55 SIHDLEAAQEYALRLKKLSDELKGDL-------SIIMRAYLEKPRTTVGWKGLIND 103
>d1seja1 c.71.1.1 (A:3-180) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 178
Score = 26.7 bits (58), Expect = 2.5
Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 2/110 (1%)
Query: 126 VVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLD 185
VV A + G+G +G W+ IT K N A+I RK +S+
Sbjct: 7 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKK--NALIMGRKTWDSIGRRP 64
Query: 186 DNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG 235
+ L + ++ ++ + I V
Sbjct: 65 LKNRIIVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGE 114
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.5 bits (55), Expect = 3.7
Identities = 8/62 (12%), Positives = 15/62 (24%)
Query: 27 YHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEA 86
+ L + S + AD P+ + +A + A
Sbjct: 42 PLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVA 101
Query: 87 HR 88
R
Sbjct: 102 QR 103
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 26.6 bits (58), Expect = 3.7
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 55 IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA---VVPP 109
Y G S P A K ++A L +++ G+ V P
Sbjct: 55 YYTSCMYNGYPSITTPTANMKSWSGN------QIASVANLGQRKIYMWTGSSDTTVGP 106
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 26.2 bits (57), Expect = 4.1
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 49 KPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNI 83
P P T RG++S D P A + + N+
Sbjct: 123 GPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNL 157
>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 86
Score = 24.5 bits (53), Expect = 6.8
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 9/64 (14%)
Query: 174 SRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVAN 233
SR A L R G +++R L + + K ++ +
Sbjct: 13 SRVKAAQLVLAGGPRSHGLFVIRQ-SETRPGECVLTF--------NFQGKAKHLRLSLNG 63
Query: 234 EGEY 237
G+
Sbjct: 64 HGQC 67
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
{Bacillus sp. GL1 [TaxId: 84635]}
Length = 377
Score = 25.8 bits (56), Expect = 7.3
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 63 GEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPV--FVVHGAVVPPPGW---LSLMY 117
+ Q++ AA+ + A RD A F+ G+ G ++
Sbjct: 293 ASQLDESDPERQRFIDAAKTTVTALRDGYAERDDGEAEGFIRRGSYHVRGGISPDDYTIW 352
Query: 118 -DY 119
DY
Sbjct: 353 GDY 355
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 25.2 bits (54), Expect = 9.5
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 19 NIVVVDAAYHGTVNLLLDISPR 40
+++ D Y T L +
Sbjct: 39 HLISDDCLYGCTHALFEHQLRK 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.426
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,081,876
Number of extensions: 50874
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 30
Length of query: 284
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,254,276
Effective search space: 250855200
Effective search space used: 250855200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.5 bits)