RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11785
(308 letters)
>2erw_A Serine protease inhibitor infestin; kazal type domain, blood
clotting, hydrolase inhibitor; 1.40A {Triatoma
infestans} SCOP: g.68.1.1
Length = 56
Score = 45.7 bits (108), Expect = 4e-07
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 260 CECDHSKFNPICGGDGRTYFSACHAGCQNISSIDG 294
C C + + P+CG DG+TY + C C + + G
Sbjct: 6 CACFRN-YVPVCGSDGKTYGNPCMLNCAAQTKVPG 39
>1ldt_L LDTI, tryptase inhibitor; complex (hydrolase/inhibitor), hydrolase,
inflammation; 1.90A {Hirudo medicinalis} SCOP: g.68.1.1
PDB: 1an1_I 2kmo_A 2kmp_A 2kmq_A 2kmr_A
Length = 46
Score = 44.0 bits (104), Expect = 9e-07
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 260 CECDHSKFNPICGGDGRTYFSACHAGCQNISS 291
C C P+CG DGRTY ++C A C +S
Sbjct: 4 CACPK-ILKPVCGSDGRTYANSCIARCNGVSI 34
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 43.7 bits (102), Expect = 1e-05
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 254 CATTHGCECDHSKFNPICGGDGRTYFSACH---AGCQNISSI 292
C S +CG DG TY SACH A C SI
Sbjct: 101 VTCNRICPEPSSSEQSLCGNDGVTYSSACHLRKATCLLGRSI 142
Score = 39.5 bits (91), Expect = 3e-04
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 251 EPMCATTHGCECDHSKFNPICGGDGRTYFSACH---AGCQN 288
+P C C + P+CG DG+TY + C A C+
Sbjct: 24 KPRCVCAPDCSNI-TWKGPVCGLDGKTYRNECALLKARCKE 63
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 44.1 bits (103), Expect = 2e-05
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 250 FEPMCATTHGCECDHSKFNPICGGDGRTYFSACH---AGCQNISSI 292
+ C S +CG + TY S+CH A C SI
Sbjct: 155 AHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSI 200
Score = 41.8 bits (97), Expect = 8e-05
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 251 EPMCATTHGCECDHSKFNPICGGDGRTYFSACH---AGCQN 288
P C C +CG DG TY C A C+
Sbjct: 81 RPRCECAPDCSGL-PARLQVCGSDGATYRDECELRAARCRG 120
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 43.8 bits (102), Expect = 2e-05
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 254 CATTHGCECDHSKFNPICGGDGRTYFSACH---AGCQNISSIDGK 295
C C +F +C D +T+ S+CH C + G
Sbjct: 29 CQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGH 73
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 43.0 bits (100), Expect = 5e-05
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 254 CATTHGCECDHSKFNPICGGDGRTYFSACH---AGCQNISSI 292
C S +CG + TY S+CH A C SI
Sbjct: 168 VCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSI 209
Score = 42.2 bits (98), Expect = 7e-05
Identities = 10/38 (26%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 251 EPMCATTHGCECDHSKFNPICGGDGRTYFSACHAGCQN 288
P C C +CG DG TY C
Sbjct: 90 RPRCECAPDCSGL-PARLQVCGSDGATYRDECELRAAR 126
Score = 35.6 bits (81), Expect = 0.012
Identities = 5/42 (11%), Positives = 8/42 (19%), Gaps = 6/42 (14%)
Query: 253 MCATTHG----CEC--DHSKFNPICGGDGRTYFSACHAGCQN 288
+C G C C G + +
Sbjct: 11 VCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPG 52
>2f3c_I Thrombin inhibitor infestin; serine protease - inhibitor complex,
kazal-type domain, hydrolase/hydrolase inhibitor
complex; 2.50A {Triatoma infestans} SCOP: g.68.1.1 PDB:
1kma_A
Length = 55
Score = 39.1 bits (91), Expect = 6e-05
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 260 CECDHSKFNPICGGDGRTYFSACHAGCQNISS 291
C C + +CG DG TY + C C
Sbjct: 6 CACPRV-LHRVCGSDGNTYSNPCTLDCAKHEG 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 9e-05
Identities = 31/153 (20%), Positives = 47/153 (30%), Gaps = 46/153 (30%)
Query: 126 KDFPKA--VKRLLKN-------DILMYRTASSVLHILPIAGLYTFLPKYFETQFRLPSHT 176
K F + + L+N D L+ S P+ G+ Y T L
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPIS-----CPLIGVIQLA-HYVVTAKLLGFTP 260
Query: 177 ANMVSGVGGILVMGIGIILSGVFILKFKPNARFVAA---WIA-ITAVLYALGMGILTFIG 232
+ S + G G++ A +A W + +V A+ +L FIG
Sbjct: 261 GELRSYLKGATGHSQGLVT-----------AVAIAETDSWESFFVSVRKAI--TVLFFIG 307
Query: 233 C------------PMDEWAGLTNANGISSFEPM 253
P L N G+ S PM
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPS--PM 338
Score = 37.3 bits (86), Expect = 0.007
Identities = 38/237 (16%), Positives = 61/237 (25%), Gaps = 93/237 (39%)
Query: 13 YIDDNVANRESPLYFAITIGVR-------ILGPSLGFILGSFCTRLYVDLSIPSDI---- 61
Y++ N P + I + + GP L L PS +
Sbjct: 352 YVNK--TNSHLPAGKQVEISLVNGAKNLVVSGPPQS--LYGLNLTL-RKAKAPSGLDQSR 406
Query: 62 TPSDPRWIGAWWLGLVLVAVFL----------MLAAVAMF---MFPKTLT-KAS----PV 103
P R L FL ++ A + + ++ A PV
Sbjct: 407 IPFSER-------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 104 NGTTTVATLPTKKESNQKNPSLKD--------FPKAVKRLLKNDILMYRTASSVLHILPI 155
T + L + S + + D + T HIL
Sbjct: 460 YDTFDGSDL--RVLSGSISERIVDCIIRLPVKWETT-------------TQFKATHIL-- 502
Query: 156 AGLYTFLPKYFETQFRLPSHTANMVSGVGGILVM------GIGIILSGVFILKFKPN 206
F P SG+G L G+ +I++G L P+
Sbjct: 503 ----DFGP--------------GGASGLGV-LTHRNKDGTGVRVIVAGT--LDINPD 538
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 42.3 bits (98), Expect = 1e-04
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 251 EPMCATTHGCECDHSKFNPICGGDGRTYFSACHAGCQN 288
+P C C + P+CG DG+TY + C
Sbjct: 84 KPRCVCAPDCSNI-TWKGPVCGLDGKTYRNECALLKAR 120
Score = 42.3 bits (98), Expect = 1e-04
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 248 SSFEPMCATTHG-CECDHSKFNPICGGDGRTYFSACH---AGCQNISSID 293
+ C T + C S +CG DG TY SACH A C SI
Sbjct: 154 QTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIG 203
Score = 39.6 bits (91), Expect = 7e-04
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 252 PMCATTHGCECDHSKFNPICGGDGRTYFSACH---AGCQNISSI 292
C+ D P+C D TY S C A C + +
Sbjct: 236 GRCSLCDELCPDSKSDEPVCASDNATYASECAMKEAACSSGVLL 279
Score = 32.3 bits (72), Expect = 0.15
Identities = 4/29 (13%), Positives = 5/29 (17%)
Query: 260 CECDHSKFNPICGGDGRTYFSACHAGCQN 288
C GR S +
Sbjct: 15 VLYKTELSKEECCSTGRLSTSWTEEDVND 43
>1y1b_A Elastase inhibitor; non-classical, kazal-type, protease inhibitor,
CSH motif, hydrolase inhibitor; NMR {Synthetic} PDB:
1y1c_A
Length = 48
Score = 38.3 bits (89), Expect = 1e-04
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 260 CECDH---SKFNPICGGDGRTYFSACH---AGCQNISSI 292
+C +++P+CG DG TY +AC A C++ + I
Sbjct: 2 PDCPLICTMQYDPVCGSDGITYGNACMLLGASCRSDTPI 40
>1tbr_R RHODNIIN; complex (serine protease-inhibitor), kazal-type
inhibitor, T complex (serine protease-inhibitor)
complex; 2.60A {Rhodnius prolixus} SCOP: g.68.1.1
g.68.1.1 PDB: 1tbq_R
Length = 103
Score = 39.7 bits (92), Expect = 1e-04
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 260 CECDHSKFNPICGGDGRTYFSACHAGCQN 288
C C H+ + +CG DG TY + C C
Sbjct: 6 CACPHA-LHRVCGSDGETYSNPCTLNCAK 33
Score = 35.9 bits (82), Expect = 0.003
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 250 FEPMCATTHGC-ECDHSKFNPICGGDGRTYFSACHAGCQN 288
C ECD ++ P+CG D TY + C C +
Sbjct: 47 PCEPDEDEDVCQECDGDEYKPVCGSDDITYDNNCRLECAS 86
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 38.0 bits (88), Expect = 3e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 251 EPMCATTHGCECDHSKFNPICGGDGRTYFSACH---AGCQNISSI 292
+P C C + P+CG DG+TY + C A C+ +
Sbjct: 22 KPRCVCAPDCSNI-TWKGPVCGLDGKTYRNECALLKARCKEQPEL 65
>3qtl_D Kazal-type serine protease inhibitor SPI-1; serine protease -kazal
type serine protease inhibitor comple hydrolase
inhibitor; 2.60A {Carcinoscorpius rotundicauda}
Length = 75
Score = 37.2 bits (86), Expect = 5e-04
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 267 FNPICGGDGRTYFSACHAGCQNISS 291
+ P+CG +G Y + C I
Sbjct: 7 YKPVCGANGEVYDNECFLNKAGIEP 31
Score = 28.4 bits (63), Expect = 0.63
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 243 NANGISSFEPMCATTHGCECDH---SKFNPICGGDGRTYFSACHAGC 286
N GI E C +++P+C +G+ Y + C
Sbjct: 25 NKAGIEPAESWETCRGHELCPSVCTEEYDPVCV-EGKIYGNRCMQSH 70
>2jxd_A Serine protease inhibitor kazal-type 2; anti-parallel beta sheet,
beta-bulge, disulfide bond, alpha helix, pyrrolidone
carboxylic acid, secreted; NMR {Homo sapiens}
Length = 62
Score = 35.7 bits (82), Expect = 0.001
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 251 EPMCATTHGCECDHSKFNPICGGDGRTYFSACH---AGCQNISSI 292
P C+ C FNP+CG D TY + C + +I
Sbjct: 11 TPNCSQYRLPGC-PRHFNPVCGSDMSTYANECTLCMKIREGGHNI 54
>1uvf_A Serine proteinase inhibitor kazal type 5; trypsin inhibitor,
protease; NMR {Homo sapiens}
Length = 61
Score = 34.8 bits (80), Expect = 0.002
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 248 SSFEPMCATTHGCECDHSKFNPICGGDGRTYFSAC---HAGCQNISSID 293
+ + + C P+CG DG+TY + C H ++
Sbjct: 8 KDYRVLPRIGYLC---PKDLKPVCGDDGQTYNNPCMLCHENLIRQTNTH 53
>1pce_A PEC-60; proteinase inhibitor(kazal type); NMR {Sus scrofa} SCOP:
g.68.1.1
Length = 60
Score = 34.8 bits (80), Expect = 0.003
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 247 ISSFEPMCATTHGCECDH--SKFNPICGGDGRTYFSACH---AGCQNISSID 293
+ S P+C H E ++P+CG DG TY S C A +N I
Sbjct: 4 VFSRMPIC--EHMTESPDCSRIYDPVCGTDGVTYESECKLCLARIENKQDIQ 53
>1cgj_I Pancreatic secretory trypsin inhibitor (kazal type) variant 4;
serine protease/inhibitor complex; 2.30A {Homo sapiens}
SCOP: g.68.1.1
Length = 56
Score = 34.5 bits (79), Expect = 0.003
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 260 CECDHSK------FNPICGGDGRTYFSACH---AGCQNISSID 293
+C + + P+CG DG TY + C + +SI
Sbjct: 7 AKCYNELNGCTLEYRPVCGTDGDTYPNECVLCFENRKRQTSIL 49
>1yu6_C Ovomucoid; protein proteinase inhibitor, protease, hydrolase; 1.55A
{Meleagris gallopavo} SCOP: g.68.1.1 PDB: 1z7k_B*
Length = 185
Score = 36.9 bits (84), Expect = 0.003
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 233 CPMDEWAGLTNANGISSFEPMCATTHGCECDH----------SKFNPICGGDGRTYFSAC 282
C + + + C ++ P+CG D +TY + C
Sbjct: 105 CVLCAHNLEQGTSVGKKHDGECRKELAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNKC 164
Query: 283 H---AGCQNISSI 292
+ A ++ ++
Sbjct: 165 NFCNAVVESNGTL 177
Score = 34.6 bits (78), Expect = 0.018
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 250 FEPMCATTHGCECDHS---KFNPICGGDGRTYFSACHAGCQN 288
T+ + NP+CG DG TY + C N
Sbjct: 70 SRYPNTTSEEGKVMILCNKALNPVCGTDGVTYDNECVLCAHN 111
Score = 33.5 bits (75), Expect = 0.044
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 254 CATTHGCECDH---SKFNPICGGDGRTYFSA--CHAGCQNISSI 292
T + PICG DG T+ C + ++I
Sbjct: 10 NTTNEEGKDVLVCTEDLRPICGTDGVTHSECLLCAYNIEYGTNI 53
>1uvg_A Serine proteinase inhibitor kazal type 5; trypsin inhibitor,
protease; NMR {Homo sapiens}
Length = 78
Score = 34.3 bits (78), Expect = 0.006
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 248 SSFEPMCATTHGCECDHSKFNPICGGDGRTYFSACH---AGCQNISSID 293
+ + + C P+CG DG+TY + C ++
Sbjct: 8 KDYRVLPRIGYLC---PKDLKPVCGDDGQTYNNPCMLCHENLIRQTNTH 53
>2leo_A Serine protease inhibitor kazal-type 7; esophageal cancer-related
gene 2, hydrol inhibitor; NMR {Homo sapiens}
Length = 66
Score = 32.7 bits (74), Expect = 0.017
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 248 SSFEPMCATTHGCECDHSKFNPICGGDGRTYFSACHAGCQNISSIDGKVQ 297
S ++ C + P+CG D TY + CH +++ S +G+VQ
Sbjct: 14 SIYKKYPVVAIPC---PITYLPVCGSDYITYGNECHLCTESLKS-NGRVQ 59
>1tgs_I Pancreatic secretory trypsin inhibitor (kazal type); complex
(proteinase/inhibitor); 1.80A {Sus scrofa} SCOP:
g.68.1.1 PDB: 1cgi_I 1hpt_A
Length = 56
Score = 32.2 bits (73), Expect = 0.020
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 260 CECDHSK----FNPICGGDGRTYFSACH 283
C + S +NP+CG DG TY + C
Sbjct: 9 CTSEVSGCPKIYNPVCGTDGITYSNECV 36
>1r0r_I Ovomucoid, omtky3; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Meleagris gallopavo} SCOP:
g.68.1.1 PDB: 1sgr_I 2gkr_I 1cho_I 1omt_A 1omu_A 1ppf_I*
1tur_A 1tus_A 3sgb_I 2ovo_A 4ovo_A 1iy5_A 1cso_I 1ct4_I
2sgf_I 2gkt_I 2gkv_A 2nu0_I 1m8b_A 1m8c_A ...
Length = 51
Score = 30.6 bits (69), Expect = 0.058
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 267 FNPICGGDGRTYFSACH 283
+ P+CG D +TY + C+
Sbjct: 15 YRPLCGSDNKTYGNKCN 31
>1bus_A Proteinase inhibitor IIA; HET: PCA; NMR {Bos taurus} SCOP: g.68.1.1
PDB: 2bus_A*
Length = 57
Score = 30.6 bits (69), Expect = 0.078
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 267 FNPICGGDGRTYFSAC 282
NP CG +G TY + C
Sbjct: 21 SNPHCGSNGETYGNKC 36
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 32.6 bits (74), Expect = 0.14
Identities = 25/195 (12%), Positives = 62/195 (31%), Gaps = 18/195 (9%)
Query: 30 TIGVRILGPSLGFILGSFCTRLYVDLSIPSDITPSDPRWIGAWWLGLVLVAVFLMLAAVA 89
I + G SL ++ +D P ++ + + +++ ++L A+
Sbjct: 166 AIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL 225
Query: 90 MFMFPKTLTKASPVNGTTTVATLPTKKESNQKNPSLKDFPKAVKRLLKNDILMYRTASSV 149
+ + P + N + F ++ RL + + +
Sbjct: 226 IMLTK-----------------FPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQF 268
Query: 150 LHILPIAGLYTFLPKYFETQFRLPSHTANMVSGVGGILVMGIGIILSGVFILKFKPNARF 209
++ +++L +Y + + G ++ IG I +F P+
Sbjct: 269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL 328
Query: 210 -VAAWIAITAVLYAL 223
A IA+ L +
Sbjct: 329 AAYALIAMALCLISA 343
>1h0z_A Serine protease inhibitor kazal-type 5, contains hemofiltrate
peptide HF6478, hemofiltrate...; serine proteinase
inhibitor; NMR {Homo sapiens} SCOP: g.68.1.2
Length = 68
Score = 29.4 bits (65), Expect = 0.24
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 268 NPICGGDGRTYFSACHAGCQNISSIDGKVQT 298
+PI G DG+ + + C + C+ + + +
Sbjct: 31 DPIQGPDGKVHGNTC-SMCEVFFQAEEEEKK 60
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A
{Pyrococcus furiosus}
Length = 347
Score = 31.0 bits (70), Expect = 0.42
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 273 GDGRTYFSACHAGCQNISSIDGKVQTLL 300
DG+ YF+ G N+ DG+++ +
Sbjct: 271 KDGKVYFTLFEEGSVNLYIWDGEIKPIA 298
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.52
Identities = 21/164 (12%), Positives = 51/164 (31%), Gaps = 41/164 (25%)
Query: 50 RLYVDLSI-PSD--ITPSDPRWIGAWWLGLVLVAVFLMLAAVAMFMFPKTLTKASPVNGT 106
+++ LS+ P I + W ++ V +++ + +L + P T
Sbjct: 373 KMFDRLSVFPPSAHIPTI---LLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKEST 425
Query: 107 TTV-----ATLPTKKESNQKNPSLKDFPKAVKRLLKNDI------------LMYRTASSV 149
++ + + S+ D K +D+ + +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH------ 479
Query: 150 LHILPI--AGLYTFLPK-YFETQF---RLPSHTANMVSGVGGIL 187
H+ I T + + +F ++ H + + G IL
Sbjct: 480 -HLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSIL 521
Score = 28.3 bits (62), Expect = 4.2
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 113 PTKKESNQKNPSLKDFPKAVKRLLKNDILMYRTASSVLHILPIAGLYTFLPKYFETQFRL 172
P K E Q + + + + R L ND ++ +V + P L L L
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDR-LYNDNQVF-AKYNVSRLQPYLKLRQAL-------LEL 147
Query: 173 PSHTANMVSGVGGI--LVMGIGIILSGVFILKFKPNARFVAAWIAI 216
++ GV G + + + LS K F W+ +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-DFKIF---WLNL 189
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 30.4 bits (69), Expect = 0.84
Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 7/177 (3%)
Query: 68 WIGAWWLGLVLVAVFLMLAAVAMFMFPKTLTKASPVNGTTTVATLPTKKESNQKNPSLKD 127
W W L + A +L A+ F + ++ + + + L
Sbjct: 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTA 240
Query: 128 FPKAVKRLLKNDILMYRTASSVLHILPIAGLYTFLPKYFETQFRLPSHTANMVSG---VG 184
++ +L N +L Y ++V L G+ + P Y + ++
Sbjct: 241 KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA 300
Query: 185 GILVMGIGIILSGVFILKFKPNARFVAAWIAITAVLYALGMGILTFIGCPMDEWAGL 241
GI G +L G K R +T V A + + G P + +
Sbjct: 301 GI----PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM 353
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 30.2 bits (67), Expect = 0.93
Identities = 9/50 (18%), Positives = 13/50 (26%)
Query: 238 WAGLTNANGISSFEPMCATTHGCECDHSKFNPICGGDGRTYFSACHAGCQ 287
A N + + A C+C N G C +G
Sbjct: 478 CAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTY 527
>3tjq_A Serine protease HTRA1; hydrolase; 2.00A {Homo sapiens}
Length = 140
Score = 28.8 bits (63), Expect = 1.3
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 260 CECDHSKFNPICGGDGRTYFSACH 283
C C S+ P+CG D TY + C
Sbjct: 92 CVCASSE--PVCGSDANTYANLCQ 113
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding
protein, lyase; HET: KCX ALY; 1.55A {Thermus
thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Length = 301
Score = 27.5 bits (60), Expect = 5.8
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 104 NGTTTVATLPTKKESNQKNPSLKDFPKAVKRLLKNDILMYRTASSVLHILPIAGLYTFLP 163
N T +A L ++ + +L+D + ++ + ++R ++P A F
Sbjct: 39 NRTLRLAHLTEERVREKAAENLRDLERILRFNADHGFALFRIGQH---LIPFASHPLFPY 95
Query: 164 KYFE 167
+
Sbjct: 96 DWEG 99
>2vpz_C Hypothetical membrane spanning protein; oxidoreductase,
molybdopterin guanine dinucleotide, iron-sulfur,
metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus
thermophilus} PDB: 2vpx_C* 2vpw_C* 2vpy_C*
Length = 253
Score = 27.4 bits (60), Expect = 6.5
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 62 TPSDPRWIGAWWLGLVLVAVFLMLAAVAMFMFPKTLTKASPVNGTTTVATLPTKKESNQK 121
P+ P W GAW LGL + L + + + + + + + P +
Sbjct: 84 HPTSPIWWGAWGLGLGFLTGGL----LYLGKGSQRALAWALLVFSLVALSYPGLALAVNL 139
Query: 122 NPSLKD------FPKAVKRLLKNDILMYRTASSVLHILPIAGLYTFLPKYFETQFRLPSH 175
N L + FP L + ++ ++ + +AG L + P
Sbjct: 140 NRPLWNGLMAGLFPLTALVLALGLAALLKSPWALFPLRVLAGASLLLALLYPLTLP-PEA 198
Query: 176 TANMVSGVGGILVMGIGIILSGVFILKFKPNARFVAAWIAITAVLYALG 224
+++ G + + + L + + P A +AA + A+L G
Sbjct: 199 RGHLLEEAGFWYGLFLLLGLGTFWQERLAPWAGLLAA-AGLRALLVLAG 246
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.438
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,730,488
Number of extensions: 282668
Number of successful extensions: 725
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 53
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.1 bits)